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At least 1,711 records · Page 95Linked to original sources
USGS2011

A novel member of the family Hepeviridae from cutthroat trout ( Oncorhynchus clarkii )

Beginning in 1988, the Chinook salmon embryo (CHSE-214) cell line was used to isolate a novel virus from spawning adult trout in the state of California, USA. Termed the cutthroat trout ( Oncorhynchus clarkii ) virus (CTV), the small, round virus was not associated with disease, but was subsequently found to be present in an increasing number of trout populations in the western USA, likely by a combination of improved surveillance activities and the shipment of infected eggs to new locations. Here, we report that the full length genome of the 1988 Heenan Lake isolate of CTV consisted of 7269 nucleotides of positive-sense, single-stranded RNA beginning with a 5' untranslated region (UTR), followed by three open reading frames (ORFs), a 3' UTR and ending in a polyA tail. The genome of CTV was similar in size and organization to that of Hepatitis E virus (HEV) with which it shared the highest nucleotide and amino acid sequence identities. Similar to the genomes of human, rodent or avian hepeviruses, ORF 1 encoded a large, non-structural polyprotein that included conserved methyltransferase, protease, helicase and polymerase domains, while ORF 2 encoded the structural capsid protein and ORF 3 the phosphoprotein. Together, our data indicated that CTV was clearly a member of the family Hepeviridae , although the level of amino acid sequence identity with the ORFs of mammalian or avian hepeviruses (13-27%) may be sufficiently low to warrant the creation of a novel genus. We also performed a phylogenetic analysis using a 262. nt region within ORF 1 for 63 isolates of CTV obtained from seven species of trout reared in various geographic locations in the western USA. While the sequences fell into two genetic clades, the overall nucleotide diversity was low (less than 8.4%) and many isolates differed by only 1-2 nucleotides, suggesting an epidemiological link. Finally, we showed that CTV was able to form persistently infected cultures of the CHSE-214 cell line that may have use in research on the biology or treatment of hepevirus infections of humans or other animals.

Virus Research↗
USGS2016

The conservation genetics juggling act: Integrating genetics and ecology, science and policy

The field of conservation genetics, when properly implemented, is a constant juggling act integrating molecular genetics, ecology, and demography with applied aspects concerning managing declining species or implementing conservation laws and policies. This young field has grown substantially since the 1980’s following development of the polymerase chain reaction and now into the genomics era. Our lab has “grown up” with the field, having worked on these issues for over three decades. Our multi-disciplinary approach entails understanding the behavior and ecology of species as well as the underlying processes that contribute to genetic viability. Taking this holistic approach provides a comprehensive understanding of factors that influence species persistence and evolutionary potential while considering annual challenges that occur throughout their life cycle. As a federal lab, we are often addressing the needs of the U.S. Fish and Wildlife Service in their efforts to list, de-list or recover species. Nevertheless, there remains an overall communication gap between research geneticists and biologists who are charged with implementing their results. Therefore, we outline the need for a National Center for Small Population Biology to ameliorate this problem and provide organizations charged with making status decisions firmer ground from which to make their critical decisions.

Evolutionary Applications↗
USGS2013

The predicted influence of climate change on lesser prairie-chicken reproductive parameters

The Southern High Plains is anticipated to experience significant changes in temperature and precipitation due to climate change. These changes may influence the lesser prairie-chicken (Tympanuchus pallidicinctus) in positive or negative ways. We assessed the potential changes in clutch size, incubation start date, and nest survival for lesser prairie-chickens for the years 2050 and 2080 based on modeled predictions of climate change and reproductive data for lesser prairie-chickens from 2001-2011 on the Southern High Plains of Texas and New Mexico. We developed 9 a priori models to assess the relationship between reproductive parameters and biologically relevant weather conditions. We selected weather variable(s) with the most model support and then obtained future predicted values from climatewizard.org. We conducted 1,000 simulations using each reproductive parameter's linear equation obtained from regression calculations, and the future predicted value for each weather variable to predict future reproductive parameter values for lesser prairie-chickens. There was a high degree of model uncertainty for each reproductive value. Winter temperature had the greatest effect size for all three parameters, suggesting a negative relationship between above-average winter temperature and reproductive output. The above-average winter temperatures are correlated to La Nina events, which negatively affect lesser prairie-chickens through resulting drought conditions. By 2050 and 2080, nest survival was predicted to be below levels considered viable for population persistence; however, our assessment did not consider annual survival of adults, chick survival, or the positive benefit of habitat management and conservation, which may ultimately offset the potentially negative effect of drought on nest survival.

PLoS ONE↗
USGS2025

Module 4: Basic biology of wetland animals

An assortment of animals inhabit wetlands, with many invertebrates, amphibians and reptiles, fishes, birds, and some mammals being wetland specialists. Wetlands provide ample water, food, and cover that benefits resident animals, but periodic high floods, frequent drying, and harsh water qualities (low-oxygen, acidic, saline) can stress wetland animals. Animals that rely on wetlands have developed numerous adaptations to cope with these stresses. The animal biodiversity in wetlands is particularly valued by people, from deep historical and cultural connections, to modern ecotourists and bird watchers who observe it and hunters and anglers who appreciate the consumptive resources they provide. Animals such as alligators and beavers create or physically-modify wetland environments; this activity is called ecosystem engineering and makes these animals among the most important organisms to wetland ecology. Wetlands are high in biodiversity and support rich communities of wetland invertebrates, are primary breeding habitats for most amphibians, and nearly all migratory birds rely on wetlands during some part of their annual cycle. The interactions of animals with plants (herbivory, cutting) and each other (predation) strongly shape wetland environments and affect nutrient cycling. Human impacts on wetlands can negatively affect many animals through habitat loss and degradation, resulting in many wetland amphibians, reptiles, and birds being listed as threatened and endangered species. Thus, wetland conservation is vital to conserve many animal species.

Wetland Science & Practice↗
USGS2009

Prevention, early detection and containment of invasive, nonnative plants in the Hawaiian Islands: current efforts and needs

Introduction: Invasive, non-native plants (or environmental weeds) have long been recognized as a major threat to the native biodiversity of oceanic islands (Cronk & Fuller, 1995; Denslow, 2003). Globally, several hundred non-native plant species have been reported to have major impacts on natural areas on oceanic islands (Kueffer et al ., 2009). In Hawaii, at least some 50 non-native plant species reach dominance in natural areas (Kueffer et al ., 2009) and many of them are known to impact ecosystem processes or biodiversity. One example is the invasive Australian tree fern ( Cyathea cooperi ), which has been shown to be very efficient at utilizing soil nitrogen and can grow six times as rapidly in height, maintain four times more fronds, and produce significantly more fertile fronds per month than the native Hawaiian endemic tree ferns, Cibotium spp. (Durand & Goldstein, 2001a, b). Additionally, while native tree ferns provide an ideal substrate for epiphytic growth of many understory ferns and flowering plants, the Australian tree fern has the effect of impoverishing the understory and failing to support an abundance of native epiphytes (Medeiros & Loope, 1993). Other notorious examples of invasive plant species problematic for biodiversity and ecosystem processes in Hawaii include miconia ( Miconia calvescens ), strawberry guava ( Psidium cattleianum ), albizia ( Falcataria moluccana ), firetree ( Morella faya ), clidemia ( Clidemia hirta ), kahili ginger ( Hedychium gardnerianum ), and fountain grass ( Pennisetum setaceum ), to name just a few. Fireweed ( Senecio madagascariensis ) is a recent example of a seriously problematic invasive species for Hawaii’s agriculture and is damaging certain high-elevations native ecosystems as well. The threat of invasive plants has long been recognized in Hawaii and is well documented (e.g. Cox, 1999; Loope & Kraus, 2009 in press; Loope et al ., 2004; Mooney & Drake, 1986; Stone & Scott, 1985; Stone et al. , 1992). In many respects, Hawaii may be near the forefront among national and international efforts to address the burgeoning threat of invasive plants, perhaps especially in the field of outreach and education (Holt, 1996; Van Driesche & Van Driesche, 2000). However, given the scale of the problem many challenges still need to be addressed and gaps in the existing management system need to be identified. In particular, it appears that new non-native plant species are still introduced to the Hawaiian Islands at a high rate with little or no regard for their potential invasiveness. In fact, a Pacific-wide and a global survey of non-native plants on oceanic islands have both shown that on Hawaii among all archipelagos by far the highest number of problematic invasive species known from other areas in the world is already present (Denslow et al . 2009, Kueffer et al . 2009). Hawaii lacks an effective mechanism for tracking what species are present or incoming. For instance, early detection nursery surveys conducted on Maui in 2008 found over 300 species of cultivated vascular plants that have not previously been recorded in Hawaii (Starr et al. , in prep.). In spite of an innovative Hawaii Biological Survey (e.g. Eldredge & Evenhuis, 2003), there is no mechanism for recording presence of a species until it becomes naturalized. Some of these new introductions may quickly become serious pests. Fireweed, first recorded in Hawaii on the Big Island in the early 1980s, is now considered one of the Kueffer & Loope 2009 5/48 worst weeds of pastures and is also invading natural areas from near sea level to above 10,000 feet. Although the cultivated and as yet non-invasive Cortaderia selloana has been present in Hawaii for 50 years or more, the morphologically similar Cortaderia jubata was simultaneously found to be present on Maui and invading on a large scale in 1989. It played an important role in inspiring the establishment of the Maui Invasive Species Committee (MISC) in 1997, and MISC now spends roughly $200,000 per year removing and containing C. jubata to keep it from becoming widespread in high elevation conservation lands of East and West Maui. The existence of many similar examples shows that to date regulatory action to prevent new invasive plant species from establishing and spreading in Hawaii has not yet been as successful as it needs to be. In particular, because some problematic invasive species known from other areas in the world (Kueffer et al ., 2009; Weber, 2003) have not yet been recorded from Hawaii, preventive measures against the introduction and spread of such likely invasive species is therefore an urgent need for Hawaii. Indeed, regulation of importation and early detection and eradication of introduced species before they become abundant and widespread are widely considered the most cost-efficient and often only effective measures against the threat of new invasive species (Kueffer & Hirsch Hadorn, 2008; Wittenberg & Cock, 2001). Timing seems favorable for Hawaii to achieve effective protection against the threat of new invasive species through prevention, early detection, and eradication/containment. Through the establishment and evolution of Invasive Species Committees (ISCs) on each major Hawaiian island, the institutional capacity has been built up for prevention, early detection, containment, and outreach at an island scale. Weed risk assessment (Daehler et al ., 2004) and early detection methodologies (Starr et al. , in review-a, b) have been developed and tested specifically for Hawaii. Containment strategies have been successful (e.g., Special Ecological Areas in Hawaii Volcanoes National Park), and so have eradications of particular species on an island scale (e.g. mullein ( Verbascum thapsus ) and other species on Maui, fireweed ( Senecio madagascariensis ) on Kauai). These successful management strategies may be further strengthened through recently developed novel approaches in research (e.g. remote sensing, species distribution modelling, and molecular genetics tools). Another major recent achievement is the gained support of the plant industry for preventive measures against invasive species (see p. 13ff). Last but not least, regulatory action is also moving forward. Passage of House Bill 2517 by the 2008 Hawaii House and Senate and prompt signing of the bill into law by the Governor provides hope that action to ban the sale of a meaningful suite of restricted weeds can quickly proceed through the rulemaking phase into the implementation phase. This report documents these achievements and experiences and provides a range of perspectives on how to further develop prevention, early detection and containment of invasive species in Hawaii. The report is based on a symposium and workshop held at the 2008 Hawaii Conservation Conference in Honolulu on 31 July 2008.

Hawaii↗
USGS2013

Amphibians and reptiles of Guyana, South America: illustrated keys, annotated species accounts, and a biogeographic synopsis

Guyana has a very distinctive herpetofauna. In this first ever detailed modern accounting, based on voucher specimens, we document the presence of 324 species of amphibians and reptiles in the country; 148 amphibians, 176 reptiles. Of these, we present species accounts for 317 species and color photographs of about 62% (Plates 1–40). At the rate that new species are being described and distributional records are being found for the first time, we suspect that at least 350 species will be documented in a few decades. The diverse herpetofauna includes 137 species of frogs and toads, 11 caecilians, 4 crocodylians, 4 amphisbaenians, 56 lizards, 97 snakes, and 15 turtles. Endemic species, which occur nowhere else in the world, comprise 15% of the herpetofauna. Most of the endemics are amphibians, comprising 27% of the amphibian fauna. Type localities (where the type specimens or scientific name-bearers of species were found) are located within Guyana for 24% of the herpetofauna, or 36% of the amphibians. This diverse fauna results from the geographic position of Guyana on the Guiana Shield and the isolated highlands or tepuis of the eastern part of the Pantepui Region, which are surrounded by lowland rainforest and savannas. Consequently, there is a mixture of local endemic species and widespread species characteristic of Amazonia and the Guianan Region. Although the size of this volume may mislead some people into thinking that a lot is known about the fauna of Guyana, the work has just begun. Many of the species are known from fewer than five individuals in scientific collections; for many the life history, distribution, ecology, and behavior remain poorly known; few resources in the country are devoted to developing such knowledge; and as far as we are aware, no other group of animals in the fauna of Guyana has been summarized in a volume such as this to document the biological resources. We briefly discuss aspects of biogeography, as reflected in samples collected at seven lowland sites (in rainforest, savanna, and mixed habitats below 500 m elevation) and three isolated highland sites (in montane forest and evergreen high-tepui forest above 1400 m elevation). Comparisons of these sites are preliminary because sampling of the local faunas remains incomplete. Nevertheless, it is certain that areas of about 2.5 km2 of lowland rainforest can support more than 130 species of amphibians and reptiles (perhaps actually more than 150), while many fewer species (fewer than 30 documented so far) occur in a comparable area of isolated highlands, where low temperatures, frequent cloudiness, and poor soils are relatively unfavorable for amphibians and reptiles. Furthermore, insufficient study has been done in upland sites of intermediate elevations, where lowland and highland faunas overlap significantly, although considerable work is being accomplished in Kaieteur National Park by other investigators. Comparisons of the faunas of the lowland and isolated highland sites showed that very few species occur in common in both the lowlands and isolated highlands; that those few are widespread lowland species that tolerate highland environments; that many endemic species (mostly amphibians) occur in the isolated highlands of the Pakaraima Mountains; and that each of the isolated highlands, lowland savannas, and lowland rainforests at these 10 sites have distinctive faunal elements. No two sites were identical in species composition. Much more work is needed to compare a variety of sites, and especially to incorporate upland sites of intermediate elevations in such comparisons. Five species of sea turtles utilize the limited areas of Atlantic coastal beaches to the northwest of Georgetown. All of these are listed by the International Union for the Conservation of Nature as being of global concern for long-term survival, mostly owing to human predation. The categories of Critically Endangered or Endangered are applied to four of the local sea turtles (80%). It is important to protect the few good nesting beaches for the sea turtles of Guyana. We have documented each of the species now known to comprise the herpetofauna of Guyana by citing specimens that exist in scientific collections, many of which were collected and identified by us and colleagues, including students of the University of Guyana (UG). We also re-identified many old museum specimens collected by others in the past (e.g., collections of William Beebe) and we used documented publications and collection records of colleagues, most of whom have been working more recently. We present dichotomous keys for identifying representatives of the species known to occur in Guyana, and we present brief annotated species accounts. The accounts provide the current scientific name, original name (with citation of the original description, which we personally examined in the literature), some outdated names used in the recent past, type specimens, type localities, general geographic distribution, examples of voucher specimens from Guyana, coloration in life (and often a color photograph), and comments pointing out interesting subjects for future research.

Proceedings of the Biological Society of Washingto↗
USGS2019

Conducting and interpreting fish telemetry studies: Considerations for researchers and resource managers

Telemetry is an increasingly common tool for studying the ecology of wild fish, with great potential to provide valuable information for management and conservation. For researchers to conduct a robust telemetry study, many essential considerations exist related to selecting the appropriate tag type, fish capture and tagging methods, tracking protocol, data processing and analyses, and interpretation of findings. For telemetry-derived knowledge to be relevant to managers and policy makers, the research approach must consider management information needs for decision-making, while end users require an understanding of telemetry technology (capabilities and limitations), its application to fisheries research and monitoring (study design), and proper interpretation of results and conclusions (considering the potential for biases and proper recognition of associated uncertainties). To help bridge this gap, we provide a set of considerations and a checklist for researchers to guide them in conducting reliable and management-relevant telemetry studies, and for managers to evaluate the reliability and relevance of telemetry studies so as to better integrate findings into management plans. These considerations include implicit assumptions, technical limitations, ethical and biological realities, analytical merits, and the relevance of study findings to decision-making processes.

Reviews in Fish Biology and Fisheries↗
USGS2013

U.S. Department of the Interior South Central Climate Science Center strategic science plan, 2013--18

The Department of the Interior (DOI) recognizes and embraces the unprecedented challenges of maintaining our Nation’s rich natural and cultural resources in the 21st century. The magnitude of these challenges demands that the conservation community work together to develop integrated adaptation and mitigation strategies that collectively address the impacts of climate change and other landscape-scale stressors. On September 14, 2009, DOI Secretary Ken Salazar signed Secretarial Order 3289 (amended February 22, 2010) entitled, “Addressing the Impacts of Climate Change on America’s Water, Land, and Other Natural and Cultural Resources.” The Order establishes the foundation for two partner-based conservation science entities to address these unprecedented challenges: Climate Science Centers (CSCs and Landscape Conservation Cooperatives (LCCs). CSCs and LCCs are the Department-wide approach for applying scientific tools to increase understanding of climate change and to coordinate an effective response to its impacts on tribes and the land, water, ocean, fish and wildlife, and cultural-heritage resources that DOI manages. Eight CSCs have been established and are managed through the U.S. Geological Survey (USGS) National Climate Change and Wildlife Science Center (NCCWSC); each CSC works in close collaboration with their neighboring CSCs, as well as those across the Nation, to ensure the best and most efficient science is produced. The South Central CSC was established in 2012 through a cooperative agreement with the University of Oklahoma, Texas Tech University, Louisiana State University, the Chickasaw Nation, the Choctaw Nation of Oklahoma, Oklahoma State University, and NOAA’s Geophysical Fluid Dynamics Lab; hereafter termed the ”Consortium” of the South Central CSC. The Consortium has a broad expertise in the physical, biological, natural, and social sciences to address impacts of climate change on land, water, fish and wildlife, ocean, coastal, and cultural resources. The South Central CSC will provide scientific information, tools, and techniques that managers and other parties interested in land, water, wildlife, and cultural resources can use to anticipate, monitor, and adapt to climate change, actively engaging LCCs and other partners in translating science into management decisions. This document is the first Strategic Science Plan for the South Central CSC (2013-18). Using the January 2011 DOI guidance as a model, this document (1) describes the role and interactions of the South Central CSC among partners and stakeholders including Federal, State, and non-governmental organizations throughout the region; (2) describes a concept of what the center will provide to its partners; (3) defines a context for climate impacts in the south central United States; and (4) establishes the science priorities the center will address through research. Science priorities are currently organized as immediate or future research needs; however, this document is intended to be reevaluated and modified as partner needs change and as scientific work progresses.

Open-File Report↗
USGS2013

Landscape-level estimation of nitrogen removal in coastal Louisiana wetlands: potential sinks under different restoration scenarios

Coastal eutrophication in the northern Gulf of Mexico (GOM) is the primary anthropogenic contributor to the largest zone of hypoxic bottom waters in North America. Although biologically mediated processes such as denitrification (Dn) are known to act as sinks for inorganic nitrogen, it is unknown what contribution denitrification makes to landscape-scale nitrogen budgets along the coast. As the State of Louisiana plans the implementation of a 2012 Coastal Master Plan (MP) to help restore its wetlands and protect its coast, it is critical to understand what effect potential restoration projects may have in altering nutrient budgets. As part of the MP, a spatial statistical approach was developed to estimate nitrogen removal under varying scenarios of future conditions and coastal restoration project implementation. In every scenario of future conditions under which MP implementation was modeled, more nitrogen ( ) was removed from coastal waters when compared with conditions under which no action is taken. Overall, the MP increased coast-wide average nitrogen removal capacity (NRC) rates by up to 0.55 g N m −2 y −1 compared with the “future without action” (FWOA) scenario, resulting in a conservative estimate of up to 25% removal of the annual + load of the Mississippi-Atchafalaya rivers (956,480 t y −1 ). These results are spatially correlated, with the lower Mississippi River and Chenier Plain exhibiting the greatest change in NRC. Since the implementation of the MP can maintain, and in some regions increase the NRC, our results show the need to preserve the functionality of wetland habitats and use this ecosystem service ( i.e . Dn) to decrease eutrophication of the GOM.

Louisiana↗
USGS2013

Fort Collins Science Center Ecosystem Dynamics branch--interdisciplinary research for addressing complex natural resource issues across landscapes and time

The Ecosystem Dynamics Branch of the Fort Collins Science Center offers an interdisciplinary team of talented and creative scientists with expertise in biology, botany, ecology, geology, biogeochemistry, physical sciences, geographic information systems, and remote-sensing, for tackling complex questions about natural resources. As demand for natural resources increases, the issues facing natural resource managers, planners, policy makers, industry, and private landowners are increasing in spatial and temporal scope, often involving entire regions, multiple jurisdictions, and long timeframes. Needs for addressing these issues include (1) a better understanding of biotic and abiotic ecosystem components and their complex interactions; (2) the ability to easily monitor, assess, and visualize the spatially complex movements of animals, plants, water, and elements across highly variable landscapes; and (3) the techniques for accurately predicting both immediate and long-term responses of system components to natural and human-caused change. The overall objectives of our research are to provide the knowledge, tools, and techniques needed by the U.S. Department of the Interior, state agencies, and other stakeholders in their endeavors to meet the demand for natural resources while conserving biodiversity and ecosystem services. Ecosystem Dynamics scientists use field and laboratory research, data assimilation, and ecological modeling to understand ecosystem patterns, trends, and mechanistic processes. This information is used to predict the outcomes of changes imposed on species, habitats, landscapes, and climate across spatiotemporal scales. The products we develop include conceptual models to illustrate system structure and processes; regional baseline and integrated assessments; predictive spatial and mathematical models; literature syntheses; and frameworks or protocols for improved ecosystem monitoring, adaptive management, and program evaluation. The descriptions in this fact sheet provide snapshots of our three research emphases, followed by descriptions of select current projects.

Fact Sheet↗
USGS2016

A dynamic leaf gas-exchange strategy is conserved in woody plants under changing ambient CO 2 : evidence from carbon isotope discrimination in paleo and CO 2 enrichment studies

Rising atmospheric [CO 2 ], c a , is expected to affect stomatal regulation of leaf gas-exchange of woody plants, thus influencing energy fluxes as well as carbon (C), water, and nutrient cycling of forests. Researchers have proposed various strategies for stomatal regulation of leaf gas-exchange that include maintaining a constant leaf internal [CO 2 ], c i , a constant drawdown in CO 2 ( c a − c i ), and a constant c i / c a . These strategies can result in drastically different consequences for leaf gas-exchange. The accuracy of Earth systems models depends in part on assumptions about generalizable patterns in leaf gas-exchange responses to varying c a . The concept of optimal stomatal behavior, exemplified by woody plants shifting along a continuum of these strategies, provides a unifying framework for understanding leaf gas-exchange responses to c a . To assess leaf gas-exchange regulation strategies, we analyzed patterns in c i inferred from studies reporting C stable isotope ratios (δ 13 C) or photosynthetic discrimination (∆) in woody angiosperms and gymnosperms that grew across a range of c a spanning at least 100 ppm. Our results suggest that much of the c a -induced changes in c i / c a occurred across c a spanning 200 to 400 ppm. These patterns imply that c a − c i will eventually approach a constant level at high c a because assimilation rates will reach a maximum and stomatal conductance of each species should be constrained to some minimum level. These analyses are not consistent with canalization toward any single strategy, particularly maintaining a constant c i . Rather, the results are consistent with the existence of a broadly conserved pattern of stomatal optimization in woody angiosperms and gymnosperms. This results in trees being profligate water users at low c a , when additional water loss is small for each unit of C gain, and increasingly water-conservative at high c a , when photosystems are saturated and water loss is large for each unit C gain.

Global Change Biology↗
USGS2004

Seafloor habitat mapping and classification in Glacier Bay, Alaska: Phase 1 & 2 1996-2004

Glacier Bay is a diverse fjord ecosystem with multiple sills, numerous tidewater glaciers and a highly complex oceanographic system. The Bay was completely glaciated prior to the 1700’s and subsequently experienced the fastest glacial retreat recorded in historical times. Currently, some of the highest sedimentation rates ever observed occur in the Bay, along with rapid uplift (up to 2.5 cm/year) due to a combination of plate tectonics and isostatic rebound. Glacier Bay is the second deepest fjord in Alaska, with depths over 500 meters. This variety of physical processes and bathymetry creates many diverse habitats within a relatively small area (1,255 km 2 ). Habitat can be defined as the locality, including resources and environmental conditions, occupied by a species or population of organisms (Morrison et al 1992). Mapping and characterization of benthic habitat is crucial to an understanding of marine species and can serve a variety of purposes including: understanding species distributions and improving stock assessments, designing special management areas and marine protected areas, monitoring and protecting important habitats, and assessing habitat change due to natural or human impacts. In 1996, Congress recognized the importance of understanding benthic habitat for fisheries management by reauthorizing the Magnuson-Stevens Fishery Conservation and Management Act and amending it with the Sustainable Fisheries Act (SFA). This amendment emphasizes the importance of habitat protection to healthy fisheries and requires identification of essential fish habitat in management decisions. Recently, the National Park Service’s Ocean Stewardship Strategy identified the creation of benthic habitat maps and sediment maps as crucial components to complete basic ocean park resource inventories (Davis 2003). Glacier Bay National Park managers currently have very limited knowledge about the bathymetry, sediment types, and various marine habitats of ecological importance in the Park. Ocean floor bathymetry and sediment type are the building blocks of marine communities. Bottom type and shape affects the kinds of benthic communities that develop in a particular environment as well as the oceanographic conditions that communities are subject to. Accurate mapping of the ocean floor is essential for park manager’s understanding of existing marine communities and will be important in assessing human induced changes (e.g., vessel traffic and commercial fishing), biological change (e.g., rapid sea otter recolonization), and geological processes of change (e.g., deglaciation). Information on animal-habitat relationships, particularly within a marine reserve framework, will be valuable to agencies making decisions about critical habitats, marine reserve design, as well as fishery management. Identification and mapping of benthic habitat provides National Park Service mangers with tools to increase the effectiveness of resource management. The primary objective of this project is to investigate the geological characteristics of the biological habitats of halibut, Dungeness crab, king crab, and Tanner crab within Glacier Bay National Park. Additionally, habitat classification of shallow water regions of Glacier Bay will provide crucial information on the relationship between benthic habitat features and the abundance of benthic prey items for a variety of marine predators, including sea ducks, the rapidly increasing population of sea otters, and other marine mammals.

Alaska↗
USGS2008

Conservation genetics of Lake Superior brook trout: Issues, questions, and directions

Parallel efforts by several genetic research groups have tackled common themes relating to management concerns about and recent rehabilitation opportunities for coaster brook trout Salvelinus fontinalis in Lake Superior. The questions that have been addressed include the evolutionary and genetic status of coaster brook trout, the degree of relatedness among coaster populations and their relationship to riverine tributary brook trout populations, and the role and effectiveness of stocking in maintaining and restoring coasters to Lake Superior. Congruent genetic results indicate that coasters are an ecotype (life history variant) rather than an evolutionarily significant unit or genetically distinct strain. Regional structure exists among brook trout stocks, coasters being produced from local populations. Introgression of hatchery genes into wild populations appears to vary regionally and may relate to local population size, habitat integrity, and anthropogenic pressures. Tracking the genetic diversity and integrity associated with captive breeding programs is helping to ensure that the fish used for stocking are representative of their source populations and appropriate for rehabilitation efforts. Comparative analysis of shared samples among collaborating laboratories is enabling standardization of genotype scoring and interpretation as well as the development of a common toolkit for assessing genetic structure and diversity. Incorporation of genetic data into rehabilitation projects will facilitate monitoring efforts and subsequent adaptive management. Together, these multifaceted efforts provide comprehensive insights into the biology of coaster brook trout and enhance restoration options. ?? Copyright by the American Fisheries Society 2008.

Conference Paper↗
USGS2018

Insights from long-term ungrazed and grazed watersheds in a salt desert Colorado Plateau ecosystem

Dryland ecosystems cover over 41% of the earth’s land surface, and living within these important ecosystems are approximately 2 billion people, a large proportion of whom are subsistence agropastoralists. Improper grazing in drylands can negatively impact ecosystem productivity, soil conservation, hydrologic processes, downstream water quantity and quality, and ultimately human health and economic well-being. Concerns regarding the degraded state of western US rangelands in the 1950s resulted in an interagency committee to study the effects of land use on runoff and erosion processes. In 1953, a federal research group established four paired watersheds in western Colorado to study the interaction of grazing by domestic livestock, runoff, and sediment yield. Exclusion of livestock from half of the watersheds dramatically reduced runoff and sediment yield after the first 10 yr—primarily due to changes in ground cover but not vegetation. Here, we report results of repeated soils and vegetation assessments of the experimental watersheds after more than 50 yr of grazing exclusion. Results show that many of the differences in soil conditions between grazed and ungrazed watersheds observed in the 1950s and 1960s were still present in 2004, despite reduced numbers of livestock: few differences in vegetation cover but large differences in biological soil crusts, soil stability, soil compaction, and soil biogeochemistry. There were differences among soil types in response to grazing history, especially soil lichen cover and soil organic matter, nitrogen, and sodium. Comparisons of ground cover measured in 2004 with those measured in 1953, 1966, and 1972 suggest much of the differences between grazed and ungrazed watersheds likely were driven by high sheep numbers during droughts in the 1950s. Persistence of these differences, despite large reductions in stocking rates , suggest the combination of overgrazing and drought may have pushed these salt desert ecosystems into a persistent, degraded ecological state.

Salt Desert Colorado Plateau Ecosystem↗
USGS2011

Fate of 4-nonylphenol and 17β-estradiol in the Redwood River of Minnesota

The majority of previous research investigating the fate of endocrine-disrupting compounds has focused on single processes generally in controlled laboratory experiments, and limited studies have directly evaluated their fate and transport in rivers. This study evaluated the fate and transport of 4-nonylphenol, 17β-estradiol, and estrone in a 10-km reach of the Redwood River in southwestern Minnesota. The same parcel of water was sampled as it moved downstream, integrating chemical transformation and hydrologic processes. The conservative tracer bromide was used to track the parcel of water being sampled, and the change in mass of the target compounds relative to bromide was determined at two locations downstream from a wastewater treatment plant effluent outfall. In-stream attenuation coefficients ( k stream ) were calculated by assuming first-order kinetics (negative values correspond to attenuation, whereas positive values indicate production). Attenuation of 17β-estradiol ( k stream = −3.2 ± 1.0 day –1 ) was attributed primarily due to sorption and biodegradation by the stream biofilm and bed sediments. Estrone ( k stream = 0.6 ± 0.8 day –1 ) and 4-nonylphenol ( k stream = 1.4 ± 1.9 day –1 ) were produced in the evaluated 10-km reach, likely due to biochemical transformation from parent compounds (17β-estradiol, 4-nonylphenolpolyethoxylates, and 4-nonyphenolpolyethoxycarboxylates). Despite attenuation, these compounds were transported kilometers downstream, and thus additive concentrations from multiple sources and transformation of parent compounds into degradates having estrogenic activity can explain their environmental persistence and widespread observations of biological disruption in surface waters.

Minnesota↗
USGS2020

Resilience management for conservation of inland recreational fisheries

Resilience thinking has generated much interest among scientific communities, yet most resilience concepts have not materialized into management applications. We believe that using resilience concepts to characterize systems and the social and ecological processes affecting them is a way to integrate resilience into better management decisions. This situation is exemplified by inland recreational fisheries, which represent complex socioecological systems that face unpredictable and unavoidable change. Making management decisions in the context of resilience is increasingly important given mounting environmental and anthropogenic perturbations to inland systems. Herein, we propose a framework that allows resilience concepts to be better incorporated into management by (i) recognizing how current constraints and management objectives focus on desired or undesired systems (specific fish and anglers), (ii) evaluating the state of a system in terms of how both social and ecological forces enforce or erode the desired or undesired system, (iii) identifying the resilience-stage cycles a system state may undergo, and (iv) determining the broad management strategies that may be viable given the system state and resilience stage. We use examples from inland recreational fisheries to illustrate different system state and resilience stages and synthesize several key results. Across all combinations of socioecological forces, five common types of viable management strategies emerge: (i) adopt a different management preference or focus, (ii) change stakeholder attitudes or behaviors via stakeholder outreach, (iii) engage in (sometimes extreme) biological intervention, (iv) engage in fishery intervention, and (v) adopt landscape-level management approaches focusing on achieving different systems in different waters. We then discuss the challenges and weaknesses of our approach, including specifically the cases in which there are multiple strong social forces (i.e., stakeholders holding competing objectives or values) and situations where waters are not readily divisible, such as rivers or great lakes, and in which spatial separation of competing objectives will be difficult. We end with our vision of how we believe these types of operationalized resilience approaches could improve or transform inland recreational fisheries management.

Frontiers in Ecology and Evolution↗
USGS2018

Quantification of the indirect use value of functional group diversity based on the ecological role of species in the ecosystem

An important issue in biodiversity valuation is gaining a better understanding of how biodiversity conservation affects economic activities and human welfare. Quantifying the economic benefits of biodiversity for human well-being is not straightforward. Here, we expand the ecosystem service cascade by (i) attributing a methodology to the different steps of the cascade to assess the effects of changes in functional group diversity on economic activities; (ii) including multiple attributes for defining functional diversity and (iii) integrating a dynamic ecological model simulating complex interactions and feedbacks between species with an economic model assessing the effects of changes in functional group diversity for gross revenues. The stepwise methodological framework integrates a production function approach with a market price-based approach in order to investigate the indirect use value of functional group diversity based on the ecological role of species in the ecosystem. The methodology is applied to estimate the relationship between the gross economic value of Chinook salmon (Pacific Northwest, United States) and the diversity of freshwater macroinvertebrates. The results of our analysis emphasize the importance of biological diversity for sustaining ecosystem goods and services. The analysis provides a tractable framework for quantitatively exploring the economic consequences of changes in functional group diversity.

Ecological Economics↗
USGS2021

Mixed evidence for biotic homogenization of southern Appalachian fish communities

Anthropogenic impacts on the landscape can drive biotic homogenization, whereby distinct biological communities become more similar to one another over time. Land-use change in the Southern Appalachian region is expected to result in homogenization of the highly diverse freshwater fish communities as in-stream habitat alterations favor widespread cosmopolitan species at the expense of more narrowly distributed highland endemic species. We compiled four datasets spanning 25 years to (1) evaluate the effects of environmental factors on relative abundance and richness of highland endemic vs. cosmopolitan species in this region and (2) test for taxonomic homogenization, measured as a change in beta diversity over time. We found that several environmental factors differentially affected highland endemic and cosmopolitan species, with the proportion of forested land cover in a watershed most strongly predicting higher relative abundance and richness of highland endemic species. Our analysis of beta diversity change, however, shows mixed evidence of taxonomic homogenization, depending on how common species are weighted. Shifts in community composition, with or without homogenization, may warrant attention in biodiversity conservation planning.

Georgia, North Carolina↗