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At least 1,711 records · Page 95Linked to original sources
USGS2002

Residency and movement patterns of wintering dunlin in the Willamette Valley of Oregon

In the winters of 1998–1999 and 1999–2000, we tracked 67 radio-marked Dunlin ( Calidris alpina ) throughout the complex agricultural landscape of the Willamette Valley of Oregon. Individual birds were tracked across 8-week sampling periods and indicated a high degree of regional fidelity throughout the three winter sampling periods. Birds exhibited varied degrees of fidelity to specific wetland sites and were detected at an average of nine different sites. Distances traveled within the region were extensive and greatest during late winter. Females ranged farther from capture sites than males, and movement from capture sites for all birds was greatest during late winter. Mean home-range size (95% minimum convex polygons) of birds was 258.2 ± 44.8 km 2 (SE) and was greatest during late winter. Diurnal roosts were identified as centers of activities and daily movements were most pronounced during crepuscular periods. These data represent the most extensive documentation of winter movements for a shorebird at an inland site. Findings indicate Dunlin were winter residents, and extensive local movements suggest a high degree of functional connectivity of habitats.

Oregon↗
USGS2002

Space use, migratory connectivity, and population segregation among Willets breeding in the western Great Basin

Western Willets ( Catoptrophorus semipalmatus inornatus ) were banded (n = 146 breeding adults and chicks) and radio-marked (n = 68 adults) at three western Great Basin wetland complexes to determine inter- and intraseasonal space use and movement patterns (primarily in 1998 and 1999). Birds were then tracked to overwintering sites where migratory connectivity and local movements were documented. Willets arrived synchronously at breeding sites during mid-April and spent less than 12 weeks in the Great Basin. There were no movements to other sites in the Great Basin during the breeding or postbreeding season. However, most breeding birds moved locally on a daily basis from upland nest sites to wetland foraging sites. The mean distance breeding birds were detected from nests did not differ between sexes or between members of a pair, although these distances were greater among postbreeding than breeding birds. Home-range estimates did not differ significantly between paired males and females during breeding or postbreeding. However, female home ranges were larger following breeding than during breeding. Shortly after chicks fledged, adult Willets left the Great Basin for locations primarily at coastal and estuarine sites in the San Francisco Bay area. Limited data revealed little among-site movements once Willets arrived at the coast, and birds appeared to be site faithful in subsequent winters. Winter sites of western Great Basin Willets differed from those used by birds from other areas in the subspecies' range, suggesting another subspecies or distinct population segment may exist. This study illustrates the importance of understanding movements and space use throughout the annual cycle in conservation planning.

California, Oregon↗
USGS2002

Nestling sex ratios in the southwestern willow flycatcher

Using molecular-genetic techniques, we determined the gender of 202 Southwestern Willow Flycatcher ( Empidonax traillii extimus ) nestlings from 95 nests sampled over a five-year period. Overall nestling sex ratio did not vary significantly from 50:50 among years, by clutch order, or by mating strategy (monogamous vs. polygamous pairings). However, we did observe significant differences among the four sites sampled, with sex ratios biased either toward males or females at the different sites. Given the small population sizes and geographic isolation of many of the endangered subspecies' breeding populations, sex-ratio differences may have localized negative impacts.

Condor↗
USGS2020

Liquid chromatographic determination of chloramine-T and its primary degradation product, p-toluenesulfonamide, in water

N -sodium- N -chloro-ρ-toiuenesulfonamide (chloramine-T) effectively controls bacterial gill disease (BGD) in cultured fishes. BGD, a common disease of hatchery-reared salmonids, causes more fish losses than any other disease among these species. This study describes a liquid chromatographic (LC) method that is capable of direct, simultaneous analysis of chloramine-T and its primary degradation product, ρ-toluenesulfonamide (ρ-TSA), in water. The procedure involves reversed-phase (C 18 ) LC analysis with ion suppression, using 0.01 M phosphate buffer at pH 3. The mobile phase is phosphate buffer-acetonitrile (60 + 40) at 1 mL/min. Both chemicals can be detected with a UV spectrophotometer at 229 nm; the method is linear up to 40 mg chloramine-T or ρ-TSA/L. Mean recoveries were 96.4 ± 6.1% for water samples fortified with 0.03 mg chloramine-T/L and 95.3 ± 4.6% for water samples fortified with 0.005 mg ρ-TSA/L. Limits of detection without sample enrichment for chloramine-T and ρ-TSA are 0.01 mg/L and 0.001 mg/L, respectively.

Journal of AOAC International↗
USGS2006

Phylogeography and spatial genetic structure of the southern torrent salamander: Implications for conservation and management

The Southern torrent salamander ( Rhyacotriton variegatus ) was recently found not warranted for listing under the US Endangered Species Act due to lack of information regarding population fragmentation and gene flow. Found in small-order streams associated with late-successional coniferous forests of the US Pacific Northwest, threats to their persistence include disturbance related to timber harvest activities. We conducted a study of genetic diversity throughout this species' range to 1) identify major phylogenetic lineages and phylogeographic barriers and 2) elucidate regional patterns of population genetic and spatial phylogeographic structure. Cytochrome b sequence variation was examined for 189 individuals from 72 localities. We identified 3 major lineages corresponding to nonoverlapping geographic regions: a northern California clade, a central Oregon clade, and a northern Oregon clade. The Yaquina River may be a phylogeographic barrier between the northern Oregon and central Oregon clades, whereas the Smith River in northern California appears to correspond to the discontinuity between the central Oregon and northern California clades. Spatial analyses of genetic variation within regions encompassing major clades indicated that the extent of genetic structure is comparable among regions. We discuss our results in the context of conservation efforts for Southern torrent salamanders.

Oregon, Washington↗
USGS1993

Pressure increases, the formation of chromite seams, and the development of the ultramafic series in the Stillwater Complex, Montana

This paper explores the hypothesis that chromite seams in the Stillwater Complex formed in response to periodic increases in total pressure in the chamber. Total pressure increased because of the positive δ V of nucleation of CO 2 bubbles in the melt and their subsequent rise through the magma chamber, during which the bubbles increased in volume by a factor of 4–6. By analogy with the pressure changes in the summit chambers of Kilauea and Krafla volcanoes, the maximum variation was 0⋅2–0⋅25 kbar, or 5–10% of the total pressure in the Stillwater chamber. An evaluation of the likelihood of fountaining and mixing of a new, primitive liquid that entered the chamber with the somewhat more evolved liquid already in the chamber is based upon calculations using observed and inferred velocities and flow rates of basaltic magmas moving through volcanic fissures. The calculations indicate that hot, dense magma would have oozed, rather than fountained into the chamber, and early mixing of the new and residual magmas that could have resulted in chromite crystallizing alone did not take place.

Journal of Petrology↗
USGS2000

Rhyolite themobarometry and the shallowing of the magma reservoir, Coso volcanic field, California

The compositionally bimodal Pleistocene Coso volcanic field is located at the western margin of the Basin and Range province ∼60 km north of the Garlock fault. Thirty-nine nearly aphyric high-silica rhyolite domes were emplaced in the past million years: one at 1 Ma from a transient magma reservoir, one at ∼0·6 Ma, and the rest since ∼0·3 Ma. Over the past 0·6 My, the depth from which the rhyolites erupted has decreased and their temperatures have become slightly higher. Pre-eruptive conditions of the rhyolite magmas, calculated from phenocryst compositions using the two-oxide thermometer and the Al-in-hornblende barometer, ranged from 740°C and 270 MPa (2·7 kbar; ∼10 km depth) for the ∼0·6 Ma magma, to 770°C and 140 MPa (1·4 kbar; ∼5·5 km) for the youngest (∼0·04 Ma) magma. Results are consistent with either a single rhyolitic reservoir moving upward through the crust, or a series of successively shallower reservoirs. As the reservoir has become closer to the surface, eruptions have become both more frequent and more voluminous.

California↗
USGS1994

Prospects for increasing the salt tolerance of forest trees: A review

Three major themes related to the improvement of salt tolerance in forest tree species are examined. First, evidence demonstrating that substantial intraspecific variation in salt tolerance exists in many species is presented. This evidence is important because it suggests that efforts to improve salt tolerance through conventional plant breeding techniques are justified. Second, the physiological and genetic mechanisms controlling salt tolerance are discussed briefly. Although salt tolerance involves the integration of numerous physiological processes, there is considerable evidence that differences in the ability to exclude Na + and Cl - from leaves are the most important factors underlying intraspecific differences in tolerance . It is also becoming apparent that, although salt tolerance is a multigenic trait, major genes play an important role. Third, progress to date in improving salt tolerance of forest tree species is assessed. Compared with agricultural crops, relatively little progress has been made with either conventional or biotechnological methods, but field trials designed to test clones identified as salt tolerant in screening trials are underway now in several countries. We conclude that there is justification for cautious optimism about the prospects for improving salt tolerance in forest tree species. © 1994 Heron Publishing.

Tree Physiology↗
USGS1998

Fuel bed characteristics of Sierra Nevada conifers

A study of fuels in Sierra Nevada conifer forests showed that fuel bed depth and fuel bed weight significantly varied by tree species and developmental stage of the overstory. Specific values for depth and weight of woody, litter, and duff fuels are reported. There was a significant positive relationship between fuel bed depth and weight. Estimates of woody fuel weight using the planar intercept method were significantly related to sampled values. These relationships can be used to estimate fuel weights in the field.

California↗
USGS2010

Estimating aboveground biomass for broadleaf woody plants and young conifers in Sierra Nevada, California forests

Quantification of biomass is fundamental to a wide range of research and natural resource management goals. An accurate estimation of plant biomass is essential to predict potential fire behavior, calculate carbon sequestration for global climate change research, assess critical wildlife habitat, and so forth. Reliable allometric equations from simple field measurements are necessary for efficient evaluation of plant biomass. However, allometric equations are not available for many common woody plant taxa in the Sierra Nevada. In this report, we present more than 200 regression equations for the Sierra Nevada western slope that relate crown diameter, plant height, crown volume, stem diameter, and both crown diameter and height to the dry weight of foliage, branches, and entire aboveground biomass. Destructive sampling methods resulted in regression equations that accurately predict biomass from one or two simple, nondestructive field measurements. The tables presented here will allow researchers and natural resource managers to easily choose the best equations to fit their biomass assessment needs.

California↗
USGS2005

Host diversity begets parasite diversity: Bird final hosts and trematodes in snail intermediate hosts

An unappreciated facet of biodiversity is that rich communities and high abundance may foster parasitism. For parasites that sequentially use different host species throughout complex life cycles, parasite diversity and abundance in ‘downstream’ hosts should logically increase with the diversity and abundance of ‘upstream’ hosts (which carry the preceding stages of parasites). Surprisingly, this logical assumption has little empirical support, especially regarding metazoan parasites. Few studies have attempted direct tests of this idea and most have lacked the appropriate scale of investigation. In two different studies, we used time-lapse videography to quantify birds at fine spatial scales, and then related bird communities to larval trematode communities in snail populations sampled at the same small spatial scales. Species richness, species heterogeneity and abundance of final host birds were positively correlated with species richness, species heterogeneity and abundance of trematodes in host snails. Such community-level interactions have rarely been demonstrated and have implications for community theory, epidemiological theory and ecosystem management.

Proceedings of the Royal Society B: Biological Sci↗
USGS2008

Mid-Pliocene equatorial Pacific sea surface temperature reconstruction: a multi-proxy perspective

The Mid-Pliocene is the most recent interval of sustained global warmth, which can be used to examine conditions predicted for the near future. An accurate spatial representation of the low-latitude Mid-Pliocene Pacific surface ocean is necessary to understand past climate change in the light of forecasts of future change. Mid-Pliocene sea surface temperature (SST) anomalies show a strong contrast between the western equatorial Pacific (WEP) and eastern equatorial Pacific (EEP) regardless of proxy (faunal, alkenone and Mg/Ca). All WEP sites show small differences from modern mean annual temperature, but all EEP sites show significant positive deviation from present-day temperatures by as much as 4.4°C. Our reconstruction reflects SSTs similar to modern in the WEP, warmer than modern in the EEP and eastward extension of the WEP warm pool. The east-west equatorial Pacific SST gradient is decreased, but the pole to equator gradient does not change appreciably. We find it improbable that increased greenhouse gases (GHG) alone would cause such a heterogeneous warming and more likely that the cause of Mid-Pliocene warmth is a combination of several forcings including both increased meridional heat transport and increased GHG.

Philosophical Transactions of the Royal Society A:↗
USGS2022

Vote-processing rules for combining control recommendations from multiple models

Mathematical modelling is used during disease outbreaks to compare control interventions. Using multiple models, the best method to combine model recommendations is unclear. Existing methods weight model projections, then rank control interventions using the combined projections, presuming model outputs are directly comparable. However, the way each model represents the epidemiological system will vary. We apply electoral vote-processing rules to combine model-generated rankings of interventions. Combining rankings of interventions, instead of combining model projections, avoids assuming that projections are comparable as all comparisons of projections are made within each model. We investigate four rules: First-past-the-post, Alternative Vote (AV), Coombs Method and Borda Count. We investigate rule sensitivity by including models that favour only one action or including those that rank interventions randomly. We investigate two case studies: the 2014 Ebola outbreak in West Africa (37 compartmental models) and a hypothetical foot-and-mouth disease outbreak in UK (four individual-based models). The Coombs Method was least susceptible to adding models that favoured a single action, Borda Count and AV were most susceptible to adding models that ranked interventions randomly. Each rule chose the same intervention as when ranking interventions by mean projections, suggesting that combining rankings provides similar recommendations with fewer assumptions about model comparability.

Philosophical Transactions of the Royal Society A:↗
USGS2021

Feather corticosterone reveals developmental challenges in a long-term study of juvenile northern spotted owls

Corticosterone is a steroid hormone integral to a variety of physiological pathways and is strongly associated with the vertebrate stress response. In avian species, circulating corticosterone is sequestered into developing feathers and is used as an indicator of energy allocation during feather growth and widely applied in conservation physiology. The northern spotted owl Strix occidentalis caurina is a federally threatened old-growth forest obligate of conservation concern endemic to the Pacific Northwest of the United States and Canada. The effects of landscape characteristics and individual variation on early development in spotted owls remain unstudied despite long recognition of this knowledge gap and its potential importance to species conservation. We quantified corticosterone concentrations in 4,720 feathers from 1,056 juvenile spotted owls across seven study areas between 2001 and 2017. We used an information-theoretic approach to examine the environmental and individual factors related to feather corticosterone in juvenile spotted owls as an indicator of challenges during early development. Feather corticosterone was positively related to temperature and precipitation, and negatively related to juvenile mass at banding. We found strong support for an interaction between mass and precipitation, with greater amounts of precipitation being associated with higher levels of feather corticosterone in lighter juveniles. The temperature and precipitation metric with the strongest relationship with feather corticosterone occurred during the fledging period, suggesting that this period presents an energetic challenge for juvenile spotted owls. Greater juvenile mass decreased the effect of precipitation, suggesting that greater mass was important for juveniles to maintain homeostasis during fledgling. Feather corticosterone in juvenile spotted owls provided insights to the challenges faced during early development, adding to our understanding of spotted owl life history and potential for population recovery.

Oregon, Washington↗
USGS2024

Quantifying intraspecific variation in host resistance ad tolerance to a lethal pathogen

Testing for intraspecific variation for host tolerance or resistance in wild populations is important for informing conservation decisions about captive breeding, translocation, and disease treatment. Here, we test the importance of tolerance and resistance in multiple populations of boreal toads ( Anaxyrus boreas boreas ) against Batrachochytrium dendrobatidis (Bd), the amphibian fungal pathogen responsible for the greatest host biodiversity loss due to disease. Boreal toads have severely declined in Colorado (CO) due to Bd, but toad populations challenged with Bd in western Wyoming (WY) appear to be less affected. We used a common garden infection experiment to expose post-metamorphic toads sourced from four populations (2 in CO and 2 in WY) to Bd and monitored changes in mass, pathogen burden and survival for 8 weeks. We used a multi-state modelling approach to estimate weekly survival and transition probabilities between infected and cleared states, reflecting a dynamic infection process that traditional approaches fail to capture. We found that WY boreal toads are more tolerant to Bd infection with higher survival probabilities than those in CO when infected with identical pathogen burdens. WY toads also appeared more resistant to Bd with a higher probability of infection clearance and an average of 5 days longer to reach peak infection burdens. Our results demonstrate strong intraspecific differences in tolerance and resistance that likely contribute to why population declines vary regionally across this species. Our multi-state framework allowed us to gain inference on typically hidden disease processes when testing for host tolerance or resistance. Our findings demonstrate that describing an entire host species as ‘tolerant’ or ‘resistant’ (or lack thereof) is unwise without testing for intraspecific variation.

Colorado, Wyoming↗
USGS2020

AMMonitor: Remote monitoring of biodiversity in an adaptive framework with R

Ecological research and management programs are increasingly using autonomous monitoring units (AMUs) to collect large volumes of acoustic and/or photo data to address pressing management objectives or research goals. The data management requirements of an AMU-based monitoring effort are often overwhelming, with a considerable amount of processing to translate raw data into models and analyses that have research and management utility. We created the r package AMMonitor to simplify the process of moving from remotely collected data to analysis and results, using a comprehensive SQLite database for data management that tracks all components of a remote monitoring program. This framework enables the tracking of analyses and research/management objectives through time. We illustrate the AMMonitor approach with the example of evaluating an occurrence-based management objective for a target species. First, we provide an overview of the database and data management approach. Next, we illustrate a few available workflows: temporally adaptive sampling, automated detection of species sounds from acoustic recordings and aggregation of automated detections into an encounter history for use in an occupancy analysis, the outcome of which can be analysed with respect to the motivating management objective. Without a comprehensive framework for efficiently moving from raw remote monitoring data collection to results and analysis, monitoring programs are limited in their capacity to systematically characterize ecological processes and inform management decisions through time. AMMonitor provides an option for such a framework. Code, comprehensive documentation, and step-by-step examples are available online at https://code.usgs.gov/vtcfwru/AMMonitor

Methods in Ecology and Evolution↗
USGS2014

Effectiveness of eugenol sedation to reduce the metabolic rates of cool and warm water fish at high loading densities

Effects of eugenol (AQUI-S ® 20E, 10% active eugenol) sedation on cool water, yellow perch Perca flavescens (Mitchill), and warm water, Nile tilapia Oreochromis niloticus L. fish metabolic rates were assessed. Both species were exposed to 0, 10, 20 and 30 mg L −1 eugenol using static respirometry. In 17°C water and loading densities of 60, 120 and 240 g L −1 , yellow perch controls (0 mg L −1 eugenol) had metabolic rates of 329.6–400.0 mg O 2 kg −1 h −1 , while yellow perch exposed to 20 and 30 mg L −1 eugenol had significantly reduced metabolic rates of 258.4–325.6 and 189.1–271.0 mg O 2 kg −1 h −1 respectively. Nile tilapia exposed to 30 mg L −1 eugenol had a significantly reduced metabolic rate (424.5 ± 42.3 mg O 2 kg −1 h −1 ) relative to the 0 mg L −1 eugenol control (546.6 ± 53.5 mg O 2 kg −1 h −1 ) at a loading density of 120 g L −1 in 22°C water. No significant differences in metabolic rates for Nile tilapia were found at 240 or 360 g L −1 loading densities when exposed to eugenol. Results suggest that eugenol sedation may benefit yellow perch welfare at high densities (e.g. live transport) due to a reduction in metabolic rates, while further research is needed to assess the benefits of eugenol sedation on Nile tilapia at high loading densities.

Aquaculture Research↗