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Carbon release through abrupt permafrost thaw

The permafrost zone is expected to be a substantial carbon source to the atmosphere, yet large-scale models currently only simulate gradual changes in seasonally thawed soil. Abrupt thaw will probably occur in <20% of the permafrost zone but could affect half of permafrost carbon through collapsing ground, rapid erosion and landslides. Here, we synthesize the best available information and develop inventory models to simulate abrupt thaw impacts on permafrost carbon balance. Emissions across 2.5 million km2 of abrupt thaw could provide a similar climate feedback as gradual thaw emissions from the entire 18 million km2 permafrost region under the warming projection of Representative Concentration Pathway 8.5. While models forecast that gradual thaw may lead to net ecosystem carbon uptake under projections of Representative Concentration Pathway 4.5, abrupt thaw emissions are likely to offset this potential carbon sink. Active hillslope erosional features will occupy 3% of abrupt thaw terrain by 2300 but emit one-third of abrupt thaw carbon losses. Thaw lakes and wetlands are methane hot spots but their carbon release is partially offset by slowly regrowing vegetation. After considering abrupt thaw stabilization, lake drainage and soil carbon uptake by vegetation regrowth, we conclude that models considering only gradual permafrost thaw are substantially underestimating carbon emissions from thawing permafrost.

Nature Geoscience↗

Holocene vegetation and fire regimes in subalpine and mixed conifer forests, southern Rocky Mountains, USA

Our understanding of the present forest structure of western North America hinges on our ability to determine antecedent forest conditions. Sedimentary records from lakes and bogs in the southern Rocky Mountains of Colorado and New Mexico provide information on the relationships between climate and vegetation change, and fire history since deglaciation. We present a new pollen record from Hunters Lake (Colorado) as an example of a high-elevation vegetation history from the southern Rockies. We then present a series of six sedimentary records from ???2600 to 3500-m elevation, including sites presently at the alpine?subalpine boundary, within the Picea engelmannii?Abies lasiocarpa forest and within the mixed conifer forest, to determine the history of fire in high-elevation forests there. High Artemisia and low but increasing percentages of Picea and Pinus suggest vegetation prior to 13 500 calendar years before present (cal yr BP) was tundra or steppe, with open spruce woodland to ???11 900 cal yr BP. Subalpine forest (Picea engelmannii, Abies lasiocarpa) existed around the lake for the remainder of the Holocene. At lower elevations, Pinus ponderosa and/or contorta expanded 11 900 to 10 200 cal yr BP; mixed conifer forest expanded ???8600 to 4700 cal yr BP; and Pinus edulis expanded after ???4700 cal yr BP. Sediments from lake sites near the alpine?subalpine transition contained five times less charcoal than those entirely within subalpine forests, and 40 times less than bog sites within mixed conifer forest. Higher fire episode frequencies occurred between ???12 000 and 9000 cal yr BP (associated with the initiation or expansion of south-west monsoon and abundant lightning, and significant biomass during vegetation turnover) and at ???2000?1000 cal yr BP (related to periodic droughts during the long-term trend towards wetter conditions and greater biomass). Fire episode frequencies for subalpine?alpine transition and subalpine sites were on average 5 to 10 fire events/1000 years over the Holocene, corresponding to one fire event every ???100 to 200 years. (5) Our Holocene-length sedimentary charcoal records provide additional evidence for the anomalous nature of the 20th-century fire regime, where fires were largely suppressed as a national policy. ?? IAWF 2008.

International Journal of Wildland Fire↗

Estimating Water Storage Capacity of Existing and Potentially Restorable Wetland Depressions in a Subbasin of the Red River of the North

Executive Summary Concern over flooding along rivers in the Prairie Pothole Region has stimulated interest in developing spatially distributed hydrologic models to simulate the effects of wetland water storage on peak river flows. Such models require spatial data on the storage volume and interception area of existing and restorable wetlands in the watershed of interest. In most cases, information on these model inputs is lacking because resolution of existing topographic maps is inadequate to estimate volume and areas of existing and restorable wetlands. Consequently, most studies have relied on wetland area to volume or interception area relationships to estimate wetland basin storage characteristics by using available surface area data obtained as a product from remotely sensed data (e.g., National Wetlands Inventory). Though application of areal input data to estimate volume and interception areas is widely used, a drawback is that there is little information available to provide guidance regarding the application, limitations, and biases associated with such approaches. Another limitation of previous modeling efforts is that water stored by wetlands within a watershed is treated as a simple lump storage component that is filled prior to routing overflow to a pour point or gaging station. This approach does not account for dynamic wetland processes that influence water stored in prairie wetlands. Further, most models have not considered the influence of human-induced hydrologic changes, such as land use, that greatly influence quantity of surface water inputs and, ultimately, the rate that a wetland basin fills and spills. The goals of this study were to (1) develop and improve methodologies for estimating and spatially depicting wetland storage volumes and interceptions areas and (2) develop models and approaches for estimating/simulating the water storage capacity of potentially restorable and existing wetlands under various restoration, land use, and climatic scenarios. To address these goals, we developed models and approaches to spatially represent storage volumes and interception areas of existing and potentially restorable wetlands in the upper Mustinka subbasin within Grant County, Minn. We then developed and applied a model to simulate wetland water storage increases that would result from restoring 25 and 50 percent of the farmed and drained wetlands in the upper Mustinka subbasin. The model simulations were performed during the growing season (May-October) for relatively wet (1993; 0.79 m of precipitation) and dry (1987; 0.40 m of precipitation) years. Results from the simulations indicated that the 25 percent restoration scenario would increase water storage by 21-24 percent and that a 50 percent scenario would increase storage by 34-38 percent. Additionally, we estimated that wetlands in the subbasin have potential to store 11.57-20.98 percent of the total precipitation that fell over the entire subbasin area (52,758 ha). Our simulation results indicated that there is considerable potential to enhance water storage in the subbasin; however, evaluation and calibration of the model is necessary before simulation results can be applied to management and planning decisions. In this report we present guidance for the development and application of models (e.g., surface area-volume predictive models, hydrology simulation model) to simulate wetland water storage to provide a basis from which to understand and predict the effects of natural or human-induced hydrologic alterations. In developing these approaches, we tried to use simple and widely available input data to simulate wetland hydrology and predict wetland water storage for a specific precipitation event or a series of events. Further, the hydrology simulation model accounted for land use and soil type, which influence surface water inputs to wetlands. Although information presented in this report is specific to the Mustinka subbasin, the approaches

Open-File Report↗

Permafrost collapse is accelerating carbon release

This much is clear: the Arctic is warming fast, and frozen soils are starting to thaw, often for the first time in thousands of years. But how this happens is as murky as the mud that oozes from permafrost when ice melts. As the temperature of the ground rises above freezing, microorganisms break down organic matter in the soil. Greenhouse gases — including carbon dioxide, methane and nitrous oxide — are released into the atmosphere, accelerating global warming. Soils in the permafrost region hold twice as much carbon as the atmosphere does — almost 1,600 billion tonnes 1 . What fraction of that will decompose? Will it be released suddenly, or seep out slowly? We need to find out. Current models of greenhouse-gas release and climate assume that permafrost thaws gradually from the surface downwards. Deeper layers of organic matter are exposed over decades or even centuries, and some models are beginning to track these slow changes. But models are ignoring an even more troubling problem. Frozen soil doesn’t just lock up carbon — it physically holds the landscape together. Across the Arctic and Boreal regions, permafrost is collapsing suddenly as pockets of ice within it melt. Instead of a few centimetres of soil thawing each year, several metres of soil can become destabilized within days or weeks. The land can sink and be inundated by swelling lakes and wetlands. Abrupt thawing of permafrost is dramatic to watch. Returning to field sites in Alaska, for example, we often find that lands that were forested a year ago are now covered with lakes 2 . Rivers that once ran clear are thick with sediment. Hillsides can liquefy, sometimes taking sensitive scientific equipment with them. This type of thawing is a serious problem for communities living around the Arctic (see ‘Arctic permafrost’). Roads buckle, houses become unstable. Access to traditional foods is changing, because it is becoming dangerous to travel across the land to hunt. Families cannot reach lines of game traps that have supported them for generations.

Nature↗

Strength in Numbers: Describing the Flooded Area of Isolated Wetlands

Thousands of isolated, freshwater wetlands are scattered across the karst1 landscape of central Florida. Most are small (less than 15 acres), shallow, marsh and cypress wetlands that flood and dry seasonally. Wetland health is threatened when wetland flooding patterns are altered either by human activities, such as land-use change and ground-water pumping, or by changes in climate. Yet the small sizes and vast numbers of isolated wetlands in Florida challenge our efforts to characterize them collectively as a statewide water resource. In the northern Tampa Bay area of west-central Florida alone, water levels are measured monthly in more than 400 wetlands by the Southwest Florida Water Management Distirct (SWFWMD). Many wetlands have over a decade of measurements. The usefulness of long-term monitoring of wetland water levels would greatly increase if it described not just the depth of water at a point in the wetland, but also the amount of the total wetland area that was flooded. Water levels can be used to estimate the flooded area of a wetland if the elevation contours of the wetland bottom are determined by bathymetric mapping. Despite the recognized importance of the flooded area to wetland vegetation, bathymetric maps are not available to describe the flooded areas of even a representative number of Florida's isolated wetlands. Information on the bathymetry of isolated wetlands is rare because it is labor intensive to collect the land-surface elevation data needed to create the maps. Five marshes and five cypress wetlands were studied by the U.S. Geological Survey (USGS) during 2000 to 2004 as part of a large interdisciplinary study of isolated wetlands in central Florida. The wetlands are located either in municipal well fields or on publicly owned lands (fig. 1). The 10 wetlands share similar geology and climate, but differ in their ground-water settings. All have historical water-level data and multiple vegetation surveys. A comprehensive report by Haag and others (2005) documents bathymetric mapping approaches, the frequency of flooding in different areas of the wetlands, and the relation between flooding and vegetation in these wetlands. This fact sheet describes bathymetric mapping approaches and partial results from two natural marshes (Hillsborough River State Park Marsh, and Green Swamp Marsh) and one impaired marsh (W-29 Marsh) that is located on a municipal well field and is affected by ground-water withdrawals. (fig. 1).

Fact Sheet↗

Summary of preliminary step-trend analysis from the Interagency Whitebark Pine Long-termMonitoring Program—2004-2013

In mixed and dominant stands, whitebark pine ( Pinus albicaulis ) occurs in over two million acres within the six national forests and two national parks that comprise the Greater Yellowstone Ecosystem (GYE). Currently, whitebark pine, an ecologically important species, is impacted by multiple ecological disturbances; white pine blister rust ( Cronartium ribicola ), mountain pine beetle ( Dendroctonus ponderosae ), wildfire, and climate change all pose significant threats to the persistence of whitebark pine populations. Substantial declines in whitebark pine populations have been documented throughout its range. Under the auspices of the Greater Yellowstone Coordinating Committee (GYCC), several agencies began a collaborative, long-term monitoring program to track and document the status of whitebark pine across the GYE. This alliance resulted in the formation of the Greater Yellowstone Whitebark Pine Monitoring Working Group (GYWPMWG), which consists of representatives from the U.S. Forest Service (USFS), National Park Service (NPS), U.S. Geological Survey (USGS), and Montana State University (MSU). This groundbased monitoring program was initiated in 2004 and follows a peer-reviewed protocol (GYWPMWG 2011). The program is led by the Greater Yellowstone Inventory and Monitoring Network (GRYN) of the National Park Service in coordination with multiple agencies. More information about this monitoring effort is available at: http://science. nature.nps.gov/im/units/gryn/monitor/whitebark_pine.cfm. The purpose of this report is to provide a draft summary of the first step-trend analysis for the interagency, long-term monitoring of whitebark pine health to the Interagency Grizzly Bear Study Team (IGBST) as part of a synthesis of the state of whitebark pine in the GYE. Due to the various stages of the analyses and reporting, this is the most efficient way to provide these results to the IGBST.

Natural Resource Data Series↗

Montana Valley and Foothill Prairies Ecoregion: Chapter 6 in Status and trends of land change in the Western United States--1973 to 2000

The Montana Valley and Foothill Prairies Ecoregion comprises numerous intermountain valleys and low-elevation foothill prairies spread across the western half of Montana, on both sides of the Continental Divide (Omernik, 1987; U.S. Environmental Protection Agency, 1997). The ecoregion, which covers approximately 64,658 km 2 (24,965 mi 2 ), includes the Flathead Valley and the valleys surrounding Helena, Missoula, Bozeman, Billings, Anaconda, Dillon, and Lewistown (fig. 1). These valleys are generally characterized by shortgrass prairie vegetation and are flanked by forested mountains (Woods and others, 1999); thus, the valleys’ biotas with regards to fish and insects are comparable. In many cases, the valleys are conduits for some of the largest rivers in the state, including Clark Fork and the Missouri, Jefferson, Madison, Flathead, Yellowstone, Gallatin, Smith, Big Hole, Bitterroot, and Blackfoot Rivers (fig. 2). The Montana Valley and Foothill Prairies Ecoregion also includes the “Rocky Mountain front,” an area of prairies along the eastern slope of the northern Rocky Mountains. Principal land uses within the ecoregion include farming, grazing, and mining. The valleys serve as major transportation and utility corridors and also contain the majority of Montana’s human population. The Montana Valley and Foothill Prairies Ecoregion extends into 17 mostly rural counties throughout western Montana. Only three of the counties—Carbon, Yellowstone, and Missoula—are part of a metropolitan statistical area with contiguous built-up areas tied to an employment center. Nearly two-thirds of Montana residents live in nonmetropolitan counties (Albrecht, 2008). Ten of the counties within the ecoregion had population growth rates greater than national averages (9–13 percent) between 1970 and 2000 (table 1). Ravalli and Gallatin Counties had the highest growth rates. Population growth was largely due to amenity-related inmigration and an economy dependent on tourism, health care, and services. Counties that had population declines, such as Deer Lodge, Silver Bow, and Meagher Counties, also had declines in agriculture and mining activity, and they had railroad closures as well. Climate varies from north to south and from the east side of the Continental Divide to the west side. However, all areas are semiarid with long cold winters and short growing seasons. In the western part of the ecoregion, Beaverhead, Bitterroot, Flathead, and Lolo National Forests provide the natural resources, particularly timber, that form the economic base for towns within nearby valleys. Mineral resources from mines in and around Anaconda, Deer Lodge, and Butte have long provided an economic base for these towns (fig. 3).

Idaho;Montana;Wyoming↗

Effects of Changes in Irrigation Practices and Aquifer Development on Groundwater Discharge to the Jobos Bay National Estuarine Research Reserve near Salinas, Puerto Rico

Since 1990, about 75 acres of black mangroves have died in the Jobos Bay National Estuarine Research Reserve near Salinas, Puerto Rico. Although many factors can contribute to the mortality of mangroves, changes in irrigation practices, rainfall, and water use resulted in as much as 25 feet of drawdown in the potentiometric surface of the aquifer in the vicinity of the reserve between 1986 and 2002. To clarify the issue, the U.S. Geological Survey, in cooperation with the Puerto Rico Department of Natural and Environmental Resources, conducted a study to ascertain how aquifer development and changes in irrigation practices have affected groundwater levels and groundwater flow to the Mar Negro area of the reserve. Changes in groundwater flow to the mangrove swamp and bay from 1986 to 2004 were estimated in this study by developing and calibrating a numerical groundwater flow model. The transient simulations indicate that prior to 1994, high irrigation return flows more than offset the effect of reduced groundwater withdrawals. In this case, the simulated discharge to the coast in the modeled area was 19 million gallons per day. From 1994 through 2004, furrow irrigation was completely replaced by micro-drip irrigation, thus eliminating return flows and the simulated average coastal discharge was 7 million gallons per day, a reduction of 63 percent. The simulated average groundwater discharge to the coastal mangrove swamps in the reserve from 1986 to 1993 was 2 million gallons per day, compared to an average simulated discharge of 0.2 million gallons per day from 1994 to 2004. The average annual rainfall for each of these periods was 38 inches. The groundwater discharge to the coastal mangrove swamps in the Jobos Bay National Estuarine Research Reserve was estimated at about 0.5 million gallons per day for 2003-2004 because of higher than average annual rainfall during these 2 years. The groundwater flow model was used to test five alternatives for increasing groundwater discharge to the coastal mangrove swamps to approximately 1.4 million gallons per day: (1) artificially recharging the aquifer with injection wells or (2) by increasing irrigation return flow by going back to furrow irrigation; (3) termination of groundwater withdrawals near the mangroves; (4) reduction of groundwater withdrawals at irrigation wells by 50 percent; and (5) a combination of alternatives 2 and 4 increasing irrigation return flows and decreasing irrigation withdrawals. Each alternative assumed average climatic conditions and groundwater withdrawals at 2004 rates. Alternative 1 required 1.5 million gallons per day of injected water. Alternative 2 required flooding 958 acres with a rate of 1.84 million gallons per day if no crops are grown. Alternative 3 required the termination of 2.44 million gallons per day of withdrawals to achieve 1.34 million gallons per day of discharge to the mangroves. Alternative 4 did not achieve the objective with only 0.80 million gallons per day simulated discharge to the mangroves, while requiring a 1.26 million gallon per day reduction in groundwater withdrawals. Alternative 5 required flooding fields with additional 1.13 million gallons of day and the same reduction in groundwater withdrawals, but did achieve the objective of about 1.4 million gallons per day discharge to the mangroves. Alternative 1, incorporating injection wells near the reserve required the least amount of water to raise groundwater levels and maintain discharge of 1.4 million gallons per day through the mangroves.

Scientific Investigations Report↗

Searching for the Achilles heel(s) for maintaining invertebrate biodiversity across complexes of depressional wetlands

Wetlands are among the most threatened ecosystems worldwide due to climate change and land-use conversion. Regional biodiversity of temporary wetlands is dependent on the existence of habitat complexes with variable hydroperiods. Because temperature and rainfall regimes are predicted to shift globally, together with land-use patterns, different scenarios of wetland loss are expected in the future. To understand how wetland biodiversity might change in the future, it is important to evaluate how the loss of particular hydroperiods will affect overall diversity in a region. Using invertebrate datasets from five wetland complexes distributed across South and North America, we calculated beta diversity metrics for each region. Then we contrasted those metrics to simulations of sequential deletions of subsets (30%) of the long-, moderate- and short-hydroperiod wetlands to assess which wetland class would most affect invertebrate beta diversity in each region. Deletions of the short-hydroperiod wetlands led to the most significant decline in beta diversity. However, deletion effects of different wetland classes varied across study regions, with a negative correlation existing between deletions of the long- and short-hydroperiod wetlands on invertebrate beta diversity. Our simulations indicate that loss of short-hydroperiod wetlands will have the most significant effects on invertebrate beta diversity, but loss of long-hydroperiod wetlands will also be important. Thus, wetlands from both hydroperiod extremes should be considered when assessing potential biodiversity declines associated with habitat loss.

Journal for Nature Conservation↗

Ecological effects of pinyon-juniper removal in the Western United States—A synthesis of scientific research, January 2014–March 2021

Executive Summary Increasing density of pinyon ( Pinus spp. ) and juniper ( Juniperus spp. ) woodlands (hereinafter “pinyon-juniper”), as well as expansion of these woodlands into adjacent shrublands and grasslands, has altered ecosystem function and wildlife habitat across large areas of the interior western United States. Although there are many natural and human-caused drivers of woodland infilling and expansion, restoration of sagebrush ( Artemisia spp. ) habitat through removal of pinyon-juniper is considered an urgent management objective in many locations, particularly in support of sagebrush-dependent wildlife species of conservation concern. In December 2020, the Bureau of Land Management (BLM) established the Pinyon-Juniper Management Categorical Exclusion (PJCX) to expedite the regulatory process for pinyon-juniper removal projects on public lands, largely intended to benefit mule deer ( Odocoileus hemionus ) and greater sage-grouse ( Centrocercus urophasianus ) habitats. During final preparation of this report, the BLM discontinued use of the PJCX (as of November, 2022), but the pinyon-juniper tree removal techniques assessed in this report are commonly used and understanding their effects remains relevant to land use planning. To address areas of uncertainty relative to potential ecological effects of the PJCX, we conducted a review of the peer-reviewed science literature to better understand the likely responses of vegetation, environmental (for example, soils), and wildlife variables to specific tree removal techniques permitted by the PJCX. In brief, the PJCX permitted removal of trees by either manual cutting, mechanical cutting, or mastication; allowed certain methods to redistribute or remove resulting tree biomass after treatment; and prohibited broadcast burning, roadbuilding, removal of old-growth, and seeding of non-native species. Specifically, we conducted our review to address the following questions: How will PJCX removal techniques affect plant communities, soils, and abiotic resources? How do these pinyon-juniper removal techniques affect wildlife communities, including both woodland- and sagebrush-dependent species? What are the potential ecological implications of different pinyon-juniper removal treatment types and implementation strategies (for example, treatment sizes) over time? What are the most important gaps in our scientific understanding of how treatments might affect targeted ecosystems over space and time (for example, potential effects of climate change)? To answer these questions, we considered studies related to pinyon-juniper ecosystems, focusing on research that occurred over a large portion of the interior western United States that is the primary focus of the PJCX. We also focused on papers published from 2014 onward, to avoid excessive overlap with other recent reviews on pinyon-juniper management effects. Using strict criteria, including only considering research that tested responses for statistical significance, we identified 48 papers that primarily examined treatment effects on vegetation and other environmental variables (1,709 responses), and 11 papers that addressed effects on wildlife (132 responses). Responses to the PJCX-permitted treatments were summarized as either positive (that is, a significant increase), negative (that is, a significant decrease), or non-significant (that is, no significant difference). Responses were assigned to categories (for example, Native Annual Grass/Forb Abundance) and hierarchical treatment levels. We found that there were large proportions of non-significant responses among all categories combined, with roughly half or more of all responses non-significant (48 percent for wildlife, 60 percent for vegetation-environmental), comparable to other recent systematic reviews of pinyon-juniper treatment effects. However, we also found that when there were significant responses, some important trends potentially emerged. Important undesirable outcomes included far more positive than negative responses of exotic grass and forb abundance among nearly all treatment types. Cutting treatments were also more likely to decrease biocrust cover and microbial activity. Potentially beneficial outcomes included mostly positive responses among sagebrush obligate species, including more positive than negative responses for mule deer and sage-grouse. Some treatment types (for example, mastication) also resulted in more positive than negative responses for native grasses and forbs (although, non-significant responses were the majority). We also highlighted many limitations of this review, including how responses often come from few studies, and how some response-treatment category combinations lack adequate response data. Moreover, the existing research is often insufficient to address many key questions about treatment effects, largely owing to short time-scales and limited spatial extents of observations, which do not match the size of treatments being implemented by land managers, nor capture long-term, post-treatment ecological dynamics. We also identify a lack of research that addresses key interactions that could undermine restoration objectives, including potential effects of climate change and grazing on post-treatment environments. Thus, we emphasize the importance of integrating these factors into future pinyon-juniper treatment research, and we stress the need for use of monitoring programs and research studies that partake in data collection and analysis over long durations and broad spatial scales.

Open-File Report↗

Connecting flood-related fluvial erosion and deposition with vulnerable downstream road-stream crossings

Fluvial erosion is increasingly responsible for infrastructure and building damages associated with floods as the intensity of extreme rainfalls hit rural and urban rivers in a variety of climate settings across the United States. Extreme floods in 2016 and 2018 caused widespread culvert blockages and road failures, including extensive damage along steep tributaries and ravines in the Marengo River, Wisconsin, watershed during 2016 and 2018. A study conducted by the U.S. Geological Survey (USGS), Wisconsin Wetlands Association (WWA), Ashland County, and the Northwest Wisconsin Regional Planning Commission (NWRPC) investigated the special concern of fluvial erosion hazards (FEHs) associated with gullying, streamside landslides, and the loss of wetland storage in headwaters. In 2019, a pilot study was begun to map and classify ephemeral and perennial streams and wetlands in terms of their sensitivity to FEHs. This study combined data from field-based rapid geomorphic assessments (RGAs) coupled with a stream network-wide geographic information system (GIS) approach for mapping stream segments, referred to as fluvial process zones (FPZ), sensitive to erosion, deposition, and channel change. The GIS approach used nationally available 10-meter (m) resolution topology and an extended stream network to map FPZs based on Strahler stream order, stream power, channel slope, presence of adjacent steep valley sides and headwater flats, and adjacent landform setting. Bankfull channel widths derived from RGA-based hydraulic geometry curves combined with drainage areas, an estimate of bankfull flow, and channel slope were used to calculate specific stream power for the FPZs. Lastly, the FPZs were characterized by their location within three major landform settings that affect erosion potential. The resulting vulnerability maps provided a screening framework to identify FPZs that are sensitive to incision, gullying and mass wasting along steep headwater ephemeral channels, as well as downstream perennial channels that have the potential for valley-side landslides, coarse sediment deposition, and channel change. Lastly, each FPZ was characterized in terms of hydrologic alteration associated with ditching. The vulnerability mapping products and rankings of sensitivity of FPZs will ultimately be used by Ashland County and their collaborators to prioritize natural flood management projects that mitigate FEHs, restore hydrology, and reconnect channels with adjacent wetlands and floodplains.

Wisconsin↗

Climate teleconnections synchronize Picea glauca masting and fire disturbance: Evidence for a fire‐related form of environmental prediction

Synchronous pulses of seed masting and natural disturbance have positive feedbacks on the reproduction of masting species in disturbance‐prone ecosystems. We test the hypotheses that disturbances and proximate causes of masting are correlated, and that their large‐scale synchrony is driven by similar climate teleconnection patterns at both inter‐annual and decadal time scales. Hypotheses were tested on white spruce ( Picea glauca ), a masting species which surprisingly persists in fire‐prone boreal forests while lacking clear fire adaptations. We built masting, drought and fire indices at regional (Alaska, Yukon, Alberta, Quebec) and sub‐continental scales (western North America) spanning the second half of the 20th century. Superposed Epoch Analysis tested the temporal associations between masting events, drought and burnt area at the regional scale. At the sub‐continental scale, Superposed Epoch Analysis tested whether El Niño‐Southern Oscillation (ENSO) and its coupled effects with the Atlantic Multidecadal Oscillation (AMO) in the positive phase (AMO+/ENSO+) synchronize drought, burnt area and masting. We additionally tested the consistency of our synchronization hypotheses on a decadal temporal scale to verify whether long‐term oscillations in AMO+/ENSO+ are coherent to decadal variation in drought, burnt area and masting. Analyses demonstrated synchronicity between drought, fire and masting. In all regions the year before a mast event was drier and more fire‐prone than usual. During AMO+/ENSO+ events sub‐continental indices of drought and burnt area experienced significant departures from mean values. The same was observed for large‐scale masting in the subsequent year, confirming 1‐year lag between fire and masting. Sub‐continental indices of burnt area and masting showed in‐phase decadal fluctuations led by the AMO+/ENSO+. Results support the ‘Environmental prediction hypothesis’ for mast seeding. Synthesis . We provide evidence of large‐scale synchronicity between seed masting in Picea glauca and fire regimes in boreal forests of western North America at both inter‐annual and decadal time scales. We conclude that seed production in white spruce predicts changes in disturbance regimes by sharing the same large‐scale climate drivers with drought and fire. This gives new insides in a mechanism providing a fire‐sensitive species with higher than expected adaptability to changes in climate.

Alaska, Alberta, Quebec, Yukon↗

Development of a pan-Arctic monitoring plan for polar bears: Background paper

Polar bears (Ursus maritimus), by their very nature, and the extreme, remote environment in which they live, are inherently difficult to study and monitor. Monitoring polar bear populations is both arduous and costly and, to be effective, must be a long-term commitment. There are few jurisdictional governments and management boards with a mandate for polar bear research and management, and many have limited resources. Although population monitoring of polar bears has been a focus to some degree within most jurisdictions around the Arctic, of the 19 subpopulations recognised by the IUCN/Species Survival Commission Polar Bear Specialist Group (PBSG), adequate scientific trend data exist for only three of the subpopulations, fair trend data for five and poor or no trend data for the remaining 11 subpopulations (PBSG 2010a). There are especially critical knowledge gaps for the subpopulations in East Greenland, in the Russian Kara and Laptev seas, and in the Chukchi Sea, which is shared between Russia and the United States. The range covered by these subpopulations represents a third of the total area (approx. 23 million km2) of polar bears’ current range, and more than half if the Arctic Basin is included. If we use popular terms, we know close to nothing about polar bears in this portion of their range. As summer sea-ice extent, and to a lesser degree, spring-time extent, continues to retreat, outpacing model forecasts (Stroeve et al. 2007, Pedersen et al. 2009), polar bears face the challenge of adapting to rapidly changing habitats. There is a need to use current and synthesised information across the Arctic, and to develop new methods that will facilitate monitoring to generate new knowledge at a pan-Arctic scale. The circumpolar dimension can be lost when efforts are channelled into regional monitoring. Developing and implementing a plan that harmonises local, regional and global efforts will increase our power to detect and understand important trends for polar bears, with particular emphasis on how climate warming may differentially affect populations and habitats. Current knowledge is inadequate for a comprehensive understanding of the present and future impact of climate warming and its interaction with other stressors. The cumulative effects are unknown (Laidre et al. 2008). An integrated pan-Arctic research and monitoring plan will improve the ability to detect future trends, identify the most vulnerable subpopulations and guide effective conservation. There is a need to direct attention and resources where data are deficient to understand the mechanisms that drive trends, and to facilitate more effective and timely conservation response.

Report↗

Research, monitoring, and evaluation of emerging issues and measures to recover the Snake River Fall Chinook Salmon ESU: January 2019 - December 2019

The portion of the Snake River fall Chinook salmon Oncorhynchus tshawytscha evolutionary significant unit (ESU) that spawns upstream of Lower Granite Dam transitioned from low to high abundance during 19922019 in association with U.S. Endangered Species Act recovery efforts and other federally mandated actions. This annual report focuses on (1) numeric and habitat use responses by natural- and hatchery-origin spawners, (2) phenotypic and numeric responses by natural-origin juveniles, and (3) use of a small unmanned aerial system (sUAS) to search for fall Chinook salmon redds and carcasses. Spawners have located and used most of the available spawning habitat and that habitat is gradually approaching redd capacity. Timing of spawning and fry emergence have been relatively stable, but effects of density dependence are evident in juvenile life stages. Apparent abundance of juvenile fall Chinook salmon has increased and we noted the following responses: parr dispersal from riverine rearing habitat into Lower Granite Reservoir has become earlier; growth rate (g/d) and dispersal size of parr declined; and passage timing of smolts from the two Snake River reaches has become earlier and downstream movement rate faster. These findings coupled with stock-recruitment analyses presented in this report provide evidence for density-dependence in the Snake River reaches and in Lower Granite Reservoir that was influenced by the expansion of the recovery program. The long-term goal is to use this information in a comprehensive modeling effort to conduct action-effectiveness and uncertainty research and to inform Fish Population, Hydrosystem, Harvest, Hatchery, and Predation and Invasive Species Management Research, Monitoring, and Evaluation (RM&E) progams. In 2019, the U.S. Geological Survey (USGS) shifted survey efforts in the Snake River toward deepwater redd searches and fish collection for parentage-based tagging (PBT) analyses because all unmanned aerial system (UAS) activities were suspended by the Department of the Interior two weeks into the spawning season. We counted 81 deepwater redds at 17 of the 29 sites surveyed. Redd depths averaged 3.6 m. We collected a total of 123 live fall Chinook salmon from 16 unique geographic locations that spanned 55 river kilometers. Forty-six fish were recovered at Eureka Bar (rkm 307.1) and Kirby Creek (rkm 352.0), which accounted for 37% of all collected fish in 2019. Most (73 fish) post-spawned salmon were collected from early to mid-November just after peak spawning. A summary of 2019 PBT results can be found in Appendix A.1. In 2019, we PIT tagged subyearling fall Chinook salmon in both the Snake and Clearwater rivers. In the Snake River, we tagged 410 fish with 8-mm tags, 666 fish with 9-mm tags, and 1,082 fish 12-mm tags. During seining, our recapture rate of previously tagged fish was slightly higher in the lower reach at 11.4% than in the upper reach at 10.6%. In an effort to represent more of the population through tagging, we tagged fish as small as 45 mm with 8-mm tags at one site in the upper reach. This allowed us to increase the number of fish tagged in that reach by 17.7%. An additional 10.6% of collected fish could have been tagged in the lower reach had we used 8-mm tags in that reach. In the Clearwater River, we tagged 2,451 subyearlings and recaptured 260 (10.6%) fish in the river and 66 fish (48 tagged by USGS, 18 tagged by the Nez Perce Tribe) at Lower Granite Dam during October to provide information for growth estimation. Within riverine habitats, growth in both length and mass were higher for fish tagged with 8-mm tags than with 9- and 12-mm tags. Estimated growth in length and mass of subyearlings was higher in Lower Granite Reservoir than in riverine habitats. We adapted existing statistical models used to estimate abundance of steelhead and spring/summer Chinook salmon for fall Chinook salmon passing Lower Granite Dam. Run reconstruction efforts to date at Lower Granite Dam for Snake River fall Chinook salmon have provided estimates of the number of returning adults but with no measure of uncertainty about the estimates. The objective of this study was to estimate the abundance, with uncertainty, of marked (coded-wire tagged CWT or adipose clipped) and unmarked fall Chinook salmon past Lower Granite Dam for return years 20032018. Estimating uncertainty is important for informing the state-space life cycle model (Chapter 5), which incorporates both observation and process uncertainty into parameter estimates. The coefficient of variation (CV) for log- abundance was 1.0% or less in all years, whereas the CV for abundance averaged 4.2% and ranged from 1.4% to 10.4% among years. Over the past five years, we have been developing a two-stage state-space life-cycle model for naturally produced fall Chinook salmon in the Snake River basin. Initial efforts focused on generating juvenile and adult abundance estimates, with estimates of uncertainty, for informing the life-cycle model. In this report we 1) describe the statistical life-cycle model and improvements made since our last report to the Independent Scientific Advisory Board (ISAB), 2) estimate the effects of covariates on key demographic parameters, and 3) use the fitted life- cycle model to simulate population trajectories under hydrosystem actions proposed for the NOAA 2020 Biological Opinion (hereafter, the Proposed Action). Major recent advancements to the model include revised juvenile abundance estimates, the ability to estimate smolt-to-adult return rates (SAR) separately for subyearling and yearling juvenile fall Chinook salmon, and improvements in the observation model for estimating age, sex, and outmigration structure in adult returns. We examined the effect of numerous environmental, hydrosystem, and ocean covariates on key demographic parameters but only a few covariates were significant. For the adult-to-juvenile transition, we found the maximum weekly river flows during the winter egg- incubation period had a significant negative effect on the juvenile outmigrant abundance from that brood year. For subyearling outmigrants, percent spill during the summer had a significant positive effect on SAR and the mean winter PDO (Pacific Decadal Oscillation) had a significant negative effect on SAR. For yearling outmigrants, NPGO (North Pacific Gyre Oscillation) had a significant positive effect on SAR. We used the fitted model to simulate population trajectories under the Proposed Action, and the median 10-year geometric mean abundance was 8,222 female spawners (interquartile range: 2,592 26,714). Overall, the probability of quasi- extinction (probability of falling below 50 female spawners for 4 consecutive years) was low, with only 1.6% of all simulations having a quasi-extinction probability >0.95. Although quasi-extinction probability was low, we did not assess the additional effect of climate change, which would be expected to increase quasi-extinction probability.

Idaho, Oregon, Washington↗

A 26 million year gap in the central Arctic record at the greenhouse-icehouse transition: Looking for clues

The Cenozoic record of the Lomonosov Ridge (central Arctic Ocean) recovered during Integrated Ocean Drilling Program (IODP) Expedition 302 revealed an unexpected 26 Ma hiatus, separating middle Eocene (∼44.4 Ma) from lower Miocene sediments (∼18.2 Ma). To elucidate the nature of this unconformity, we performed a multiproxy palynological (dinoflagellate cysts, pollen, and spores), micropaleontological (siliceous microfossils), inorganic, and organic (Tetra Ether Index of lipids with 86 carbon atoms (TEX 86 ) and Branched and Isoprenoid Tetraether (BIT)) geochemical analysis of the sediments from ∼5 m below to ∼7 m above the hiatus. Four main paleoenvironmental phases (A–D) are recognized in the sediments encompassing the unconformity, two below (A–B) and two above (C–D): (A) Below the hiatus, proxies show relatively warm temperatures, with Sea Surface Temperatures (TEX 86 ‐derived SSTs) of about 8°C and high fresh to brackish water influence. (B) Approaching the hiatus, proxies indicate a cooling trend (TEX 86 ‐derived SSTs of ∼5°C), increased freshwater influence, and progressive shoaling of the Lomonosov Ridge drilling site, located close to or at sea level. (C) The interval directly above the unconformity contains sparse reworked Cretaceous to Oligocene dinoflagellate cysts. Sediments were deposited in a relatively shallow, restricted marine environment. Proxies show the simultaneous influence of both fresh and marine waters, with alternating oxic and anoxic conditions. Pollen indicates a relatively cold climate. Intriguingly, TEX 86 ‐derived SSTs are unexpectedly high, ∼15–19°C. Such warm surface waters may be partially explained by the ingression of warmer North Atlantic waters after the opening of the Fram Strait during the early Miocene. (D) Sediments of the uppermost interval indicate a phase of extreme oxic conditions, and a well‐ventilated environment, which occurred after the complete opening of the Fram Strait. Importantly, and in contrast with classical postrifting thermal subsidence models for passive margins, our data suggest that sediment erosion and/or nondeposition that generated the hiatus was likely due to a progressive shoaling of the Lomonosov Ridge. A shallow water setting both before and after the hiatus suggests that the Lomonosov Ridge remained at or near sea level for the duration of the gap in the sedimentary record. Interacting sea level changes and/or tectonic activity (possibly uplift) must be invoked as possible causes for such a long hiatus.

Paleoceanography↗

National assessment of shoreline change: historical shoreline change along the Pacific Northwest coast

Beach erosion is a chronic problem along most open ocean shores of the United States. As coastal populations continue to increase and infrastructure is threatened by erosion, there is increased demand for accurate information regarding past and present trends and rates of shoreline movement. There is also a need for a comprehensive analysis of shoreline movement that is consistent from one coastal region to another. To meet these national needs, the U.S. Geological Survey (USGS) is conducting an analysis of historical shoreline changes along the open-ocean sandy shores of the conterminous United States and parts of Hawaii, Alaska, and the Great Lakes. One purpose of this work is to develop standard, repeatable methods for mapping and analyzing shoreline movement so that periodic, systematic, and internally consistent updates regarding coastal erosion and land loss can be made nationally. In the case of the analysis of shoreline change in the Pacific Northwest (PNW), the shoreline is the interpreted boundary between the ocean water surface and the sandy beach. This report on the PNW coasts of Oregon and Washington is the seventh in a series of regionally focused reports on historical shoreline change. Previous investigations include analyses and descriptive reports of the U.S. Gulf of Mexico (Morton and others, 2004), the southeastern Atlantic (Morton and Miller, 2005), the sandy shorelines (Hapke and others, 2006) and coastal cliffs (Hapke and Reid, 2007) of California, the New England and mid-Atlantic coasts (Hapke and others, 2011), and parts of the Hawaii coast (Fletcher and others, 2012). Like the earlier reports in this series, this report summarizes the methods of analysis, interprets the results of the analysis, provides explanations regarding long- and short-term trends and rates of shoreline change, and describes how different coastal communities are responding to coastal erosion. This report differs from the early USGS reports in the series in that those shoreline change analyses incorporated only four total shorelines to represent specific time periods. This assessment of the PNW incorporates all available shorelines that meet minimum quality standards for resolution and positional accuracy. Shoreline change evaluations are based on a comparison of historical shoreline positions digitized from maps or aerial photographic data sources with recent shorelines, at least one of which is derived from lidar surveys. The historical shorelines cover a variety of time periods ranging from the 1800s through the 1980s, whereas the lidar shoreline is from 2002. Long-term rates of change are calculated using all available shoreline data and short-term rates of change are calculated using the lidar shoreline and the historical shoreline that will produce an assessment for a 15- to 35-year period. The rates of change presented in this report represent conditions up to the date of only the most recent shoreline data and therefore are not intended for predicting future shoreline positions or rates of change. The PNW coast was subdivided into eight analysis regions for the purpose of graphically reporting regional trends in shoreline change rates. The average rate of long-term shoreline change for the entire PNW coast was 0.9 meter per year (m/yr) of progradation with an uncertainty of 0.07 m/yr. This rate is based on 8,823 individual transects, of which 36 percent was determined to be eroding. Long-term shoreline change was generally more progradational in Washington than in Oregon. This is primarily due to the influence of the Columbia River and human perturbations to the natural system, particularly the construction of jetties at both the mouth of the Columbia River and at Grays Harbor, Washington. The majority of the beaches in southwestern Washington have responded to these large-scale engineered structures by experiencing dramatic beach progradation during the past century. Although these beaches are still responding to the human effects, in several locations beaches that had been rapidly prograding are now either prograding at a slower rate or eroding. The average rate of short-term shoreline change in the PNW was also progradational at a rate of 0.9 m/yr with an uncertainty of 0.03 m/yr. This rate is based on 9,087 individual transects, of which 44 percent was determined to be eroding. Similar to the results of the long-term shoreline change analysis, the shorelines in Washington were typically more progradational than those in Oregon in the short term. However, many stretches of coast in Oregon are either less accretional, changed from accretional to erosional, or more erosional when comparing the long- and short-term rate calculations. In the long and short term, there are significantly different historical shoreline change trends for beaches deriving their modern sediments from the Columbia River in southwestern Washington and northwestern Oregon, and beaches elsewhere in the PNW. The majority of shorelines in Oregon and in Washington’s Olympic Peninsula are not influenced by the human effects to the Columbia River littoral cell and typically have not experienced the human-induced century-scale trends apparent in southwestern Washington and northwestern Oregon. An increase in erosion hazards in much of Oregon may be related to the effects of sea-level rise and increasing storm wave heights. Of importance, particularly in the short term, is the alongshore variability in land uplift rates due to tectonics, which results in an alongshore varying rate of relative sea level rise that appears to at least partially control the regional variability in short-term shoreline change rates. Other climate related processes, such as the occurrence of major El Niño events, also significantly affect the shoreline changes in the region. Major El Niño events elevate monthly mean sea levels by tens of centimeters throughout the winter and produce a shift in the storm tracks, resulting in alongshore redistributions in sand volumes on the beaches, leading to hotspot beach erosion and property losses north of headlands and tidal inlets to bays and estuaries. There are limited modern-day sources of sand to Oregon’s beaches, with much of the sand being relict in having arrived thousands of years ago at a time of lowered sea levels when headlands did not prevent the alongshore movement of the beach sediments, the result being that many beaches today are deficient in sand volumes and therefore do not provide sufficient buffer protection to backshore properties during winter storms.

Oregon;Washington↗

Impoundment increases methane emissions in Phragmites-invaded coastal wetlands

Saline tidal wetlands are important sites of carbon sequestration and produce negligible methane (CH 4 ) emissions due to regular inundation with sulfate-rich seawater. Yet, widespread management of coastal hydrology has restricted tidal exchange in vast areas of coastal wetlands. These ecosystems often undergo impoundment and freshening, which in turn cause vegetation shifts like invasion by Phragmites , that affect ecosystem carbon balance. Understanding controls and scaling of carbon exchange in these understudied ecosystems is critical for informing climate consequences of blue carbon restoration and/or management interventions. Here, we (1) examine how carbon fluxes vary across a salinity gradient (4–25 psu) in impounded and natural, tidally unrestricted Phragmites wetlands using static chambers and (2) probe drivers of carbon fluxes within an impounded coastal wetland using eddy covariance at the Herring River in Wellfleet, MA, United States. Freshening across the salinity gradient led to a 50-fold increase in CH 4 emissions, but effects on carbon dioxide (CO 2 ) were less pronounced with uptake generally enhanced in the fresher, impounded sites. The impounded wetland experienced little variation in water-table depth or salinity during the growing season and was a strong CO 2 sink of −352 g CO 2 -C m −2 year −1 offset by CH 4 emission of 11.4 g CH 4 -C m −2 year −1 . Growing season CH 4 flux was driven primarily by temperature. Methane flux exhibited a diurnal cycle with a night-time minimum that was not reflected in opaque chamber measurements. Therefore, we suggest accounting for the diurnal cycle of CH 4 in Phragmites , for example by applying a scaling factor developed here of ~0.6 to mid-day chamber measurements. Taken together, these results suggest that although freshened, impounded wetlands can be strong carbon sinks, enhanced CH 4 emission with freshening reduces net radiative balance. Restoration of tidal flow to impounded ecosystems could limit CH 4 production and enhance their climate regulating benefits.

Massachusetts↗

Nutrient budgets, marsh inundation under sea-level rise scenarios, and sediment chronologies for the Bass Harbor Marsh estuary at Acadia National Park

Eutrophication in the Bass Harbor Marsh estuary on Mount Desert Island, Maine, is an ongoing problem manifested by recurring annual blooms of green macroalgae species, principally Enteromorpha prolifera and Enteromorpha flexuosa, blooms that appear in the spring and summer. These blooms are unsightly and impair the otherwise natural beauty of this estuarine ecosystem. The macroalgae also threaten the integrity of the estuary and its inherent functions. The U.S. Geological Survey and Acadia National Park have collaborated for several years to better understand the factors related to this eutrophication problem with support from the U.S. Geological Survey and National Park Service Water Quality Assessment and Monitoring Program. The current study involved the collection of hydrologic and water-quality data necessary to investigate the relative contribution of nutrients from oceanic and terrestrial sources during summer 2011 and summer 2012. This report provides data on nutrient budgets for this estuary, sedimentation chronologies for the estuary and fringing marsh, and estuary bathymetry. The report also includes data, based on aerial photographs, on historical changes from 1944 to 2010 in estuary surface area and data, based on surface-elevation details, on changes in marsh area that may accompany sea-level rise. The LOADEST regression model was used to calculate nutrient loads into and out of the estuary during summer 2011 and summer 2012. During these summers, tidal inputs of ammonium to the estuary were more than seven times greater than the combined inputs in watershed runoff and precipitation. In 2011 tidal inputs of nitrate were about four times greater than watershed plus precipitation inputs, and in 2012 tidal inputs were only slightly larger than watershed plus precipitation inputs. In 2011, tidal inputs of total organic nitrogen were larger than watershed input by a factor of 1.6. By contrast, in 2012 inputs of total organic nitrogen in watershed runoff were much larger than tidal inputs, by a factor of 3.6. During the 2011 and 2012 summers, tidal inputs of total dissolved phosphorus to the estuary were more than seven times greater than inputs in watershed runoff. It is evident that during the summer tidal inputs of inorganic nitrogen and total dissolved phosphorus to the estuary exceed inputs from watershed runoff and precipitation. Projected sea-level rise associated with ongoing climate warming will affect the area of land within the Bass Harbor Marsh estuary watershed that is inundated during conditions of mean higher high water and during mean lower low water and hence will affect the vegetation and marsh area. Given 100-centimeter sea-level rise, the inundated area would increase from 25.7 hectares at the current condition to 77.5 hectares at mean higher high water and from 21.6 hectares to 26.7 hectares at mean lower low water. Given 50-centimeter sea-level rise, flooding of the entire marsh surface, which currently occurs only under the highest spring tides, would occur on average every other day. Radioisotope analysis of sediment cores from the estuary indicates that the sediment accumulation rate increased markedly from 1930 to 1980 and was relatively constant (0.4 to 0.5 centimeter per year) from 1980 to 2009. Similarly, from 1980 to 2009 there was a consistently high mass accumulation rate of 0.09 to 0.11 grams per square centimeter per year. The sediment accretion rates determined for the five cores collected from the marsh surface (east and west sides of the estuary) in 2011 show generally higher rates of 0.20 to 0.29 centimeter per year for the period between 1980 to 2011 than for the period before 1980, when sediment accretion rates were 0.06 to 0.25 centimeter per year. The data in this report provide resource managers at Acadia National Park with a baseline that can be used to evaluate future conditions within the estuary. Climate change, sea-level rise, and land-use change within the estuary’s watershed may influence nutrient dynamics, sedimentation, and eutrophication, and these potential effects can be studied in relation to the baseline data provided in this report. The Route 102 Bridge in Tremont, Maine is constructed over a sill that controls the amount of tidal flushing by restricting the duration of the flood tide, and structural changes to the bridge could alter tidal nutrient inputs and residence times for watershed and ocean-derived nutrients in the estuary. Ongoing sea-level rise is likely increasing ocean-derived nutrients and their residence time in the estuary on the one hand and decreasing the residence time of watershed-derived nutrients on the other.

Maine↗