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At least 1,657 records · Page 92Linked to original sources
USGS2011

Characterization of culturable bacteria isolated from the cold-water coral Lophelia pertusa

Microorganisms associated with corals are hypothesized to contribute to the function of the host animal by cycling nutrients, breaking down carbon sources, fixing nitrogen, and producing antibiotics. This is the first study to culture and characterize bacteria from Lophelia pertusa, a cold-water coral found in the deep sea, in an effort to understand the roles that the microorganisms play in the coral microbial community. Two sites in the northern Gulf of Mexico were sampled over 2 years. Bacteria were cultured from coral tissue, skeleton, and mucus, identified by 16S rRNA genes, and subjected to biochemical testing. Most isolates were members of the Gammaproteobacteria, although there was one isolate each from the Betaproteobacteria and Actinobacteria. Phylogenetic results showed that both sampling sites shared closely related isolates (e.g. Pseudoalteromonas spp.), indicating possible temporally and geographically stable bacterial-coral associations. The Kirby-Bauer antibiotic susceptibility test was used to separate bacteria to the strain level, with the results showing that isolates that were phylogenetically tightly grouped had varying responses to antibiotics. These results support the conclusion that phylogenetic placement cannot predict strain-level differences and further highlight the need for culture-based experiments to supplement culture-independent studies.

FEMS Microbiology Ecology↗
USGS2007

Optimal control of Atlantic population Canada geese

Management of Canada geese ( Branta canadensis ) can be a balance between providing sustained harvest opportunity while not allowing populations to become overabundant and cause damage. In this paper, we focus on the Atlantic population of Canada geese and use stochastic dynamic programming to determine the optimal harvest strategy over a range of plausible models for population dynamics. There is evidence to suggest that the population exhibits significant age structure, and it is possible to reconstruct age structure from surveys. Consequently the harvest strategy is a function of the age composition, as well as the abundance, of the population. The objective is to maximize harvest while maintaining the number of breeding adults in the population between specified upper and lower limits. In addition, the total harvest capacity is limited and there is uncertainty about the strength of density-dependence. We find that under a density-independent model, harvest is maximized by maintaining the breeding population at the highest acceptable abundance. However if harvest capacity is limited, then the optimal long-term breeding population size is lower than the highest acceptable level, to reduce the risk of the population growing to an unacceptably large size. Under the proposed density-dependent model, harvest is maximized by maintaining the breeding population at an intermediate level between the bounds on acceptable population size; limits to harvest capacity have little effect on the optimal long-term population size. It is clear that the strength of density-dependence and constraints on harvest significantly affect the optimal harvest strategy for this population. Model discrimination might be achieved in the long term, while continuing to meet management goals, by adopting an adaptive management strategy.

Ecological Modelling↗
USGS2023

Effects of population density and environmental conditions on life-history prevalence in a migratory fish

Individual variation in life-history traits can have important implications for the ability of populations to respond to environmental variability and change. In migratory animals, flexibility in the timing of life-history events, such as juvenile emigration from natal areas, can influence the effects of population density and environmental conditions on habitat use and population dynamics. We evaluated the functional relationships between population density and environmental covariates and the abundance of juveniles expressing different life-history pathways in a migratory fish, Chinook salmon ( Oncorhynchus tshawytscha ), in the Wenatchee River basin in Washington State, USA. We found that the abundance of younger emigrants from natal streams was best described by an accelerating or near-linear function of spawners, whereas the abundance of older emigrants was best described by a decelerating function of spawners. This supports the hypothesis that emigration timing varies in response to density in natal areas, with younger-emigrating life-history pathways comprising a larger proportion of emigrants when densities of conspecifics are high. We also observed positive relationships between winter stream discharge and abundance of younger emigrants, supporting the hypothesis that habitat conditions can also influence the prevalence of different life-history pathways. Our results suggest that early emigration, and a resultant increase in the use of downstream rearing habitats, may increase at higher population densities and with greater winter precipitation. Winter precipitation is projected to increase in this system due to climate warming. Characterizing relationships between life-history prevalence and environmental conditions may improve our understanding of species habitat requirements and is a first step in understanding the dynamics of species with diverse life-history strategies. As environmental conditions change—due to climate change, management, or other factors—resultant life-history changes are likely to have important demographic implications that will be challenging to predict when life-history diversity is not accounted for in population models.

Washington↗
USGS2021

Upwelling and the persistence of coral-reef frameworks in the eastern tropical Pacific

In an era of global change, the fate and form of reef habitats will depend on shifting assemblages of organisms and their responses to multiple stressors. Multiphyletic assemblages of calcifying and bioeroding species contribute to a dynamic balance between constructive and erosive processes, and reef-framework growth occurs only when calcium-carbonate deposition exceeds erosion. Each contributing species exhibits a unique combination of environmental sensitivities, trophic needs, and competitive abilities, making the net outcome of their habitat-altering behavior difficult to predict. In this study, standardized blocks of clean, massive Porites were placed at six reef sites in the eastern tropical Pacific, in the strongly and more-weakly upwelling Gulfs of Panamá (GoP) and Chiriquí (GoC), respectively. Sites were chosen to characterize the unique thermal and carbonate-chemistry conditions of each gulf. Satellite products were used to examine differences in sea-surface productivity, and surveys were conducted to quantify the abundance of important grazing taxa. After two years in situ, the Porites blocks were collected and scanned using high-resolution computed tomography to volumetrically quantify both endolithic and epilithic habitat alteration. Scan-volumes were further classified into functional groups according to morphology to quantify external bioerosion by fish and sea urchins, as well as the calcifying and bioeroding activity of crustose coralline algae, scleractinian corals, mollusks, annelids, and barnacles. The GoP, which has higher productivity, cooler temperatures, and periodically lower pH conditions, had higher rates of macroboring, but also higher rates of calcification. These unexpectedly higher rates of calcification in the GoP were a result of high recruitment of suspension-feeding taxa, particularly barnacles and vermiform fauna that have poor reef-forming potential. External bioerosion by grazers was the dominant process influencing these dead coral substrates across both gulfs, contributing to higher rates of net erosion in the GoC and underscoring the important roles that urchins and fish play in not just removing algae on reefs, but also eroding reef habitat. Ultimately these findings reveal that the trophic requirements of habitat-altering taxa are closely tied to reef-framework stability, and that environmental conditions conducive to carbonate precipitation are not necessarily those that will lead to habitat persistence.

Ecological Monographs↗
USGS2011

Monitoring habitat restoration projects: U.S. Fish and Wildlife Service Pacific Region Partners for Fish and Wildlife Program and Coastal Program Protocol

The U.S. Fish and Wildlife Service's (FWS) Pacific Region (Region 1) includes more than 158 million acres (almost 247,000 square miles) of land base in Idaho, Oregon, Washington, Hawai`i, the Commonwealth of the Northern Mariana Islands, American Samoa, Guam, the Republic of Palau, the Federated States of Micronesia, and the Republic of the Marshall Islands. Region 1 is ecologically diverse with landscapes that range from coral reefs, broadleaf tropical forests, and tropical savannahs in the Pacific Islands, to glacial streams and lakes, lush old-growth rainforests, inland fjords, and coastal shoreline in the Pacific Northwest, to the forested mountains, shrub-steppe desert, and native grasslands in the Inland Northwest. Similarly, the people of the different landscapes perceive, value, and manage their natural resources in ways unique to their respective regions and cultures. The Partners for Fish and Wildlife Program (Partners Program) and Coastal Program work with a variety of partners in Region 1 including individual landowners, watershed councils, land trusts, Soil and Water Conservation Districts, non-governmental organizations, Tribal governments, Native Hawaiian organizations, and local, State, and Federal agencies. The Partners Program is the FWS's vanguard for working with private landowners to voluntarily restore and conserve fish and wildlife habitat. Using non-regulatory incentives, the Partners Program engages willing partners to conserve and protect valuable fish and wildlife habitat on their property and in their communities. This is accomplished by providing the funding support and technical and planning tools needed to make on-the-ground conservation affordable, feasible, and effective. The primary goals of the Pacific Region Partners Program are to: Promote citizen and community-based stewardship efforts for fish and wildlife conservation Contribute to the recovery of at-risk species, Protect the environmental integrity of the National Wildlife Refuges, Contribute to the implementation of the State Comprehensive Wildlife Conservation Strategies, and Help achieve the objectives of the National Fish Habitat Partnerships and regionally based bird conservation plans (for example, North American Waterfowl Management Plan, U.S. Pacific Island Shorebird Conservation Plans, Intermountain West Regional Shorebird Plan, etc.). The Partners Program accomplishes these priorities by: Developing and maintaining strong partnerships, and delivering on-the-ground habitat restoration projects designed to reestablish habitat function and restore natural processes; Addressing key habitat limiting factors for declining species; Providing corridors for wildlife and decrease impediments to native fish and wildlife migration; and Enhancing native plant communities by reducing invasive species and improving native species composition. The Coastal Program is a voluntary fish and wildlife conservation program that focuses on watershed-scale, long-term collaborative resource planning and on-the-ground restoration projects in high-priority coastal areas. The Coastal Program conducts planning and restoration work on private, State, and Federal lands, and partnerships with other agencies-Native American Tribes, citizens, and organizations are emphasized. Coastal Program goals include restoring and protecting coastal habitat, providing technical and cost-sharing assistance where appropriate, supporting community-based restoration, collecting and developing information on the status of and threats to fish and wildlife, and using outreach to promote stewardship of coastal resources. The diversity of habitats and partners in Region 1 present many opportunities for conducting restoration projects. Faced with this abundance of opportunity, the Partners Program and Coastal Program must ensure that limited staffing and project dollars are allocated to benefit the highest priority resources and achieve the highest quality results for Federal trust species. In 2007, the Partners Program and Coastal Program developed a Strategic Plan to guide program operations and more efficiently conserve habitat by focusing partnership building and habitat improvement actions within 35 Partners Program Focus Areas and 9 Coastal Program Focus Areas (U.S. Fish and Wildlife Service, 2010). The Strategic Plan also contains four other goals: broaden and strengthen partnerships; improve information sharing and communications; enhance workforce; and increase accountability to ensure that program resources are used efficiently and effectively. This protocol will help achieve all goals of the Strategic Plan.

Techniques and Methods↗
USGS2018

Dynamic occupancy modeling of temperate marine fish in area-based closures

Species distribution models (SDMs) are commonly used to model the spatial structure of species in the marine environment, however, most fail to account for detectability of the target species. This can result in underestimates of occupancy, where nondetection is conflated with absence. The site occupancy model (SOM) overcomes this failure by treating occupancy as a latent variable of the model and incorporates a detection submodel to account for variability in detection rates. These have rarely been applied in the context of marine fish and never for the multiseason dynamic occupancy model (DOM). In this study, a DOM is developed for a designated species of concern, cusk ( Brosme brosme ), over a four-season period. Making novel use of a high-resolution 3-dimensional hydrodynamic model, detectability of cusk is considered as a function of current speed and algae cover. Algal cover on the seabed is measured from video surveys to divide the study area into two distinct regions: those with canopy forming species of algae and those without (henceforth bottom types). Modeled estimates of the proportion of sites occupied in each season are 0.88, 0.45, 0.74, and 0.83. These are significantly greater than the proportion of occupied sites measured from underwater video observations which are 0.57, 0.28, 0.43, and 0.57. Individual fish are detected more frequently with increasing current speed in areas lacking canopy and less frequently with increasing current speed in areas with canopy. The results indicate that, where possible, SDM studies for all marine species should take account of detectability to avoid underestimating the proportion of sites occupied at a given study area. Sampling closed areas or areas of conservation often requires the use of nonphysical, low impact sampling methods like camera surveys. These methods inherently result in detection probabilities less than one, an issue compounded by time-varying features of the environment that are rarely accounted for marine studies. This work highlights the use of modeled hydrodynamics as a tool to correct some of this imbalance.

Gulf of Maine↗
USGS2024

Population and spatial dynamics of desert bighorn sheep in Grand Canyon during an outbreak of respiratory pneumonia

Introduction: Terrestrial species in riverine ecosystems face unique constraints leading to diverging patterns of population structure, connectivity, and disease dynamics. Desert bighorn sheep ( Ovis canadensis nelsoni ) in Grand Canyon National Park, a large native population in the southwestern USA, offer a unique opportunity to evaluate population patterns and processes in a remote riverine system with ongoing anthropogenic impacts. We integrated non-invasive, invasive, and citizen-science methods to address questions on abundance, distribution, disease status, genetic structure, and habitat fragmentation. Methods: We compiled bighorn sightings collected during river trips by park staff, commercial guides, and private citizens from 2000–2018 and captured bighorn in 2010–2016 to deploy GPS collars and test for disease. From 2011–2015, we non-invasively collected fecal samples and genotyped them at 9–16 microsatellite loci for individual identification and genetic structure. We used assignment tests to evaluate genetic structure and identify subpopulations, then estimated gene flow and recent migration to evaluate fragmentation. We used spatial capture-recapture to estimate annual population size, distribution, and trends after accounting for spatial variation in detection with a resource selection function model. Results and discussion: From 2010–2018, 3,176 sightings of bighorn were reported, with sightings of 56–145 bighorn annually on formal surveys. From 2012–2016, bighorn exhibiting signs of respiratory disease were observed along the river throughout the park. Of 25 captured individuals, 56% were infected by Mycoplasma ovipneumoniae , a key respiratory pathogen, and 81% were recently exposed. Pellet sampling for population estimation from 2011–2015 yielded 1,250 genotypes and 453 individuals. We detected 6 genetic clusters that exhibited mild to moderate genetic structure ( F ST 0.022–0.126). The river, distance, and likely topography restricted recent gene flow, but we detected cross-river movements in one section via genetic recaptures, no subpopulation appeared completely isolated, and genetic diversity was among the highest reported. Recolonization of one large stretch of currently empty habitat appears limited by the constrained topology of this system. Annual population estimates ranged 536–552 (95% CrI range 451–647), lamb:ewe ratios varied, and no significant population decline was detected. We provide a multi-method sampling framework useful for sampling other wildlife in remote riverine systems.

Arizona↗
USGS2000

Primary food resources in the Sacramento-San Joaquin Delta

The Sacramento-San Joaquin River Delta, a complex mosaic of tidal freshwater habitats, is now a focus of ecosystem rehabilitation because of changes in critical functions associated with its geographic location at the landestuary interface. One of these functions is the production, transport, and transformation of organic matter that constitutes the “primary food supply,” that is, the food supply to the base of the food web. Interest in the primary food supply is motivated by evidence for sub-optimal food quantity or quality at trophic levels that support fish recruitment, including primary consumers such as clams, mysids, cladocerans, rotifers, and native copepods. We used the historical data set to examine the magnitudes of the most important organic matter sources for the Delta, the factors underlying their interannual and longer-term variability, and the implications of ecosystem rehabilitation actions for these sources. Here, we present a summary of the first phase of the analysis, including the quantitative importance of different organic matter sources and some of the hydrological controls on their year-to-year variability. The full report of this first phaseincluding data sources, the methods of calculation, and references, is in press elsewhere (Jassby and Cloern forthcoming). The historical data analysis is part of a larger project in which measurements of stable isotopes and biogeochemical markers, and experiments on organic matter biodegradation and zooplankton growth rates, are being used collectively to define the primary food resources and their quality.

California↗
USGS2015

U.S. Geological Survey Chesapeake science strategy, 2015-2025—Informing ecosystem management of America’s largest estuary

Executive Summary The U.S. Geological Survey (USGS) has the critical role of providing scientific information to improve the understanding and management of the Chesapeake Bay ecosystem. The USGS works with Federal, State, and academic science partners to provide research and monitoring, and communicate results of these activities to enhance ecosystem management for both the Chesapeake and other National ecosystems. The USGS Chesapeake Science Strategy was prepared to guide science activities to address the Chesapeake Bay Watershed Agreement (2014–2025), to support the Department of the Interior (DOI) involvement in the Bay restoration efforts, and align with the USGS Mission Area (MA) Science strategies. The Chesapeake Bay is our Nation’s largest estuary, and provides critical goods and services to the people, fish, and wildlife that use the 64,000-square-mile watershed. The Chesapeake Bay watershed contains over 3,600 species of fish, wildlife, and plants and provides spawning grounds for many ecologically and economically important species including striped bass and blue crabs. The Bay watershed lies in the heart of the Atlantic Flyway and has 29 species of waterfowl, about 1 million of which winter in the region. The size of the Chesapeake seafood harvest is third in the Nation, only behind the Atlantic and Pacific Oceans. Along with agricultural production, tourism, and recreation, the estimated economic value of the services from the Chesapeake Bay watershed is about $100 billion annually. However, the health of the Bay ecosystem began to decline at the beginning of the 20th century due to overfishing and increasing human population and associated land change. The Chesapeake Bay Program (CBP) is the Federal-State cooperative effort that started in 1983 to restore the Bay and watershed. Given the ecological and economic importance of the Chesapeake ecosystem, President Obama issued an Executive Order (EO) in 2009 for increased Federal leadership in the CBP to enhance the pace of restoration, and the supporting strategy was released in 2010. The EO directed the Federal Government, including the U.S. Department of the Interior (DOI), represented by the National Park Service (NPS), the U.S. Fish & Wildlife Service (FWS), and the USGS, to expand its efforts and increase leadership to restore the Bay and its watershed. The USGS and other Federal agencies expanded their activities in 2011 to meet the President’s Chesapeake EO. Since the EO was released, there have been several important changes in the USGS, DOI, and the CBP including: (1) the Chesapeake Bay Watershed Agreement, (2) increased DOI leadership in the CBP, and (3) the release of the USGS MA science strategies. The EO strategy served as a foundation for the Chesapeake Bay Watershed Agreement that was signed in 2014 by the CBP Partners, and has goals and outcomes to be met by 2025. The USGS developed the Chesapeake Science Strategy to guide our activities to address the Chesapeake Bay Watershed Agreement, DOI leadership in the CBP, and USGS MA strategies. Improving the understanding of fish and wildlife population and health, and the factors affecting their condition is the emphasis of the Strategy. The science focuses on documenting the critical ecosystem connections in the Chesapeake, and providing implications to enhance decision making for restoration and conservation activities. The revised Strategy has four themes that address 7 of the 10 goals in the Chesapeake Bay Watershed Agreement: Enhance science to support restoration, and conservation of fish, wildlife, and critical habitats. Characterize and explain changes in water quality, and its effect on freshwater and estuarine ecosystems. Assess and forecast effects of climate and land change on ecosystem conditions. Synthesize and provide information to support ecosystem management. The structure and function of biological communities of the Bay and its watershed are extremely complex and are affected by a variety of stressors and conditions. To better define the issues being addressed, the USGS has developed cross-cutting questions that define some of the most important scientific challenges where multiple disciplines and collaborators are needed to address an issue. The initial questions include: How do land and climate changes affect freshwater fish communities, health, and habitats? What are the relations among land use, water quality, contaminants, and the health of fish and wildlife? How are coastal wetlands and their carrying capacity for waterbirds affected by changing climate and land use? How is the water quality of rivers and estuaries responding to restoration actions, and changing land use? What are some of the best opportunities for management actions to benefit multiple restoration outcomes?

Delaware, Maryland, New York, Pennsylvania, Virgin↗
USGS1997

Review of selected features of the natural system model, and suggestions for applications in south Florida

A study was conducted to review selected features of the Natural System Model, version 4.3. The Natural System Model is a regional-scale model that uses recent climatic data and estimates of historic vegetation and topography to simulate pre-canal-drainage hydrologic response in south Florida. Equations used to represent the hydrologic system and the numerical solution of these equations in the model were documented and reviewed. Convergence testing was performed using 1965 input data, and selected other aspects of the model were evaluated. Some conclusions from the evaluation of the Natural System Model include the following observations. Simulations were generally insensitive to the temporal resolution used in the model. However, reduction of the computational cell size from 2-mile by 2-mile to 2/3-mile by 2/3-mile resulted in a decrease in spatial mean ponding depths for October of 0.35 foot for a 3-hour time step. Review of the computer code indicated that there is no limit on the amount of water that can be transferred from the river system to the overland flow system, on the amount of seepage from the river to the ground-water system, on evaporation from the river system, or on evapotranspiration from the overland-flow system. Oscillations of 0.2 foot or less in simulated river stage were identified and attributed to a volume limiting function which is applied in solution of the overland-flow equations. The computation of the resistance coefficient is not consistent with the computation of overland-flow velocity. Ground-water boundary conditions do not always ensure a no-flow condition at the boundary. These inconsistencies had varying degrees of effects on model simulations, and it is likely that simulations longer than 1 year are needed to fully identify effects. However, inconsistencies in model formulations should not be ignored, even if the effects of such errors on model results appear to be small or have not been clearly defined. The Natural System Model can be a very useful tool for estimating pre-drainage hydrologic response in south Florida. The model includes all of the important physical processes needed to simulate a water balance. With a few exceptions, these hydrologic processes are represented in a reasonable manner using empirical, semiempirical, and mechanistic relations. The data sets that have been assembled to represent physical features, and hydrologic and meteorological conditions are quite extensive in their scope. Some suggestions for model application were made. Simulation results from the Natural System Model need to be interpreted on a regional basis, rather than cell by cell. The available evidence suggests that simulated water levels should be interpreted with about a plus or minus 1 foot uncertainty. It is probably not appropriate to use the Natural System Model to estimate pre-drainage discharges (as opposed to hydroperiods and water levels) at a particular location or across a set of adjacent computational cells. All simulated results for computational cells within about 10 miles of the model boundaries have a higher degree of uncertainty than results for the interior of the model domain. It is most appropriate to interpret the Natural System Model simulation results in connection with other available information. Stronger linkages between hydrologic inputs to the Everglades and the ecological response of the system would enhance restoration efforts.

Florida↗
USGS2022

Interpreting long-distance movements of non-migratory golden eagles: Prospecting and nomadism?

Movements by animals can serve different functions and occur over a variety of spatial and temporal scales. Routine movement types, such as residency (localized movements) and migration, have been well studied. However, nonroutine movement types, such as dispersal, prospecting, and nomadism, are less well understood. Documenting these rarely detected events requires tracking large numbers of individuals across all age classes. We studied >500 golden eagles ( Aquila chrysaetos ) tracked by telemetry over a 10-year period in western North America, of which 160 engaged in nonroutine, long-distance (>300 km) movements. We identified spatial and temporal correlates of those movements at both small and large scales, and we quantified movement timing and direction. We further tested which age and sex classes of eagles were more likely to engage in these movements. Our analysis of 88,093 daily tracks suggested that distances traveled by eagles were responsive to the updraft potential of the spatial and temporal landscape they encountered. Tracks covered longer distances at locations and times of higher updraft potential, and older birds traveled farther than younger birds. By contrast, after decomposing daily tracks into 563 nonroutine, long-distance movements measured at a multiday scale, only the duration of travel was responsive to environmental conditions encountered by eagles. Multiday trips that were longer were those initiated in open and warm landscapes and those that ended in mountainous regions. Finally, long-distance movements were more frequently made in seasons other than winter, in north–south directions, and by young birds. We documented clear correlates of nonroutine, long-distance movements by golden eagles at small, local scales but found little evidence of such correlates at larger, regional scales. Most long-distance movements we documented fit patterns associated with traditional definitions of prospecting and nomadism but not migration. Our study is the first to describe these movement types by golden eagles, and as such provides a foundation for subsequent study into the movement ecology of other species.

Ecosphere↗
USGS2014

Investigations of novel unsaturated bile salts of male sea lamprey as potential chemical cues

Sulfated bile salts function as chemical cues that coordinate reproduction in sea lamprey, Petromyzon marinus . 7α, 12α, 24-trihydroxy-5α-cholan-3-one 24-sulfate (3kPZS) is the most abundant known bile salt released by sexually mature male sea lampreys and attracts ovulated females. However, previous studies showed that the male-produced pheromone consists of unidentified components in addition to 3kPZS. Here, analysis of water conditioned with mature male sea lampreys indicated the presence of 4 oxidized, unsaturated compounds with molecular weights of 466 Da, 468 Da, and 2 of 470 Da. These compounds were not detectable in water conditioned with immature male sea lampreys. By using mass spectrometry, 4 A-ring unsaturated sulfated bile salts were tentatively identified from male washings as 2 4-ene, a 1-ene, and a 1,4-diene analogs. These were synthesized to determine if they attracted ovulated female sea lampreys to spawning nests in natural streams. One of the novel synthetic bile salts, 3 keto-1-ene PZS, attracted ovulated females to the point of application at a concentration of 10 -12 M. This study reveals the structural diversity of bile salts in sea lamprey, some of which have been demonstrated to be pheromonal cues.

Journal of Chemical Ecology↗
USGS2012

A quantitative assessment of the conservation benefits of the Wetlands Reserve Program to amphibians

The Mississippi Alluvial Valley (MAV) originally consisted of nearly contiguous bottomland hardwood (BLH) forest encompassing approximately 10 million hectares. Currently, only 20–25% of the historical BLH forests remain in small patches fragmented by agricultural lands. The Wetlands Reserve Program (WRP) was established to restore and protect the functions and values of wetlands in agricultural landscapes. To assess the potential benefit of WRP restoration to amphibians, we surveyed 30 randomly selected WRP sites and 20 nearby agricultural sites in the Mississippi Delta. We made repeat visits to each site from May to August 2008 and performed both visual encounter and vocalization surveys. We analyzed the encounter history data for 11 anuran species using a Bayesian hierarchical occupancy model that estimated detection probability and probability of occurrence simultaneously for each species. Nine of the 11 species had higher probabilities of occurrence at WRP sites compared to agriculture. Derived estimates of species richness were also higher for WRP sites. Five anuran species were significantly more likely to occur in WRP than in agriculture, four of which were among the most aquatic species. It appears that the restoration of a more permanent hydrology at the WRP sites may be the primary reason for this result. Although amphibians represent only one group of wildlife species, they are useful for evaluating restoration benefits for wildlife because of their intermediate trophic position. The methods used in this study to evaluate the benefit of restoration could be used in other locations and with other groups of indicator species.

Mississippi↗
USGS2013

Limitation and facilitation of one of the world's most invasive fish: an intercontinental comparison

Purposeful species introductions offer opportunities to inform our understanding of both invasion success and conservation hurdles. We evaluated factors determining the energetic limitations of brown trout (Salmo trutta) in both their native and introduced ranges. Our focus was on brown trout because they are nearly globally distributed, considered one of the world's worst invaders, yet imperiled in much of their native habitat. We synthesized and compared data describing temperature regime, diet, growth, and maximum body size across multiple spatial and temporal scales, from country (both exotic and native habitats) and major geographic area (MGA) to rivers and years within MGA. Using these data as inputs, we next used bioenergetic efficiency (BioEff), a relative scalar representing a realized percentage of maximum possible consumption (0–100%) as our primary response variable and a multi-scale, nested, mixed statistical model (GLIMMIX) to evaluate variation among and within spatial scales and as a function of density and elevation. MGA and year (the residual) explained the greatest proportion of variance in BioEff. Temperature varied widely among MGA and was a strong driver of variation in BioEff. We observed surprisingly little variation in the diet of brown trout, except the overwhelming influence of the switch to piscivory observed only in exotic MGA. We observed only a weak signal of density-dependent effects on BioEff; however, BioEff remained <50% at densities >2.5 fish/m2. The trajectory of BioEff across the life span of the fish elucidated the substantial variation in performance among MGAs; the maximum body size attained by brown trout was consistently below 400 mm in native habitat but reached 600 mm outside their native range, where brown trout grew rapidly, feeding in part on naive prey fishes. The integrative, physiological approach, in combination with the intercontinental and comparative nature of our study, allowed us to overcome challenges associated with context-dependent variation in determining invasion success. Overall our results indicate “growth plasticity across the life span” was important for facilitating invasion, and should be added to lists of factors characterizing successful invaders.

Ecology↗
USGS2002

Advanced techniques for modeling avian nest survival

Estimation of avian nest survival has traditionally involved simple measures of apparent nest survival or Mayfield constant-nest-survival models. However, these methods do not allow researchers to build models that rigorously assess the importance of a wide range of biological factors that affect nest survival. Models that incorporate greater detail, such as temporal variation in nest survival and covariates representative of individual nests represent a substantial improvement over traditional estimation methods. In an attempt to improve nest survival estimation procedures, we introduce the nest survival model now available in the program MARK and demonstrate its use on a nesting study of Mountain Plovers ( Charadrius montanus Townsend) in Montana, USA. We modeled the daily survival of Mountain Plover nests as a function of the sex of the incubating adult, nest age, year, linear and quadratic time trends, and two weather covariates (maximum daily temperature and daily precipitation) during a six-year study (1995–2000). We found no evidence for yearly differences or an effect of maximum daily temperature on the daily nest survival of Mountain Plovers. Survival rates of nests tended by female and male plovers differed (female rate = 0.33; male rate = 0.49). The estimate of the additive effect for males on nest survival rate was 0.37 (95% confidence limits were 0.03, 0.71) on a logit scale. Daily survival rates of nests increased with nest age; the estimate of daily nest-age change in survival in the best model was 0.06 (95% confidence limits were 0.04, 0.09) on a logit scale. Daily precipitation decreased the probability that the nest would survive to the next day; the estimate of the additive effect of daily precipitation on the nest survival rate was −1.08 (95% confidence limits were −2.12, −0.13) on a logit scale. Our approach to modeling daily nest-survival rates allowed several biological factors of interest to be easily included in nest survival models and allowed us to generate more biologically meaningful estimates of nest survival.

Ecology↗
USGS2008

Physical and chemical changes in the foreshore of an estuarine beach: Implications for viability and development of horseshoe crab Limulus polyphemus eggs

Knowledge of conditions that favor development of eggs is important for management of species whose population growth is sensitive to early life history survival. Viability and development of the eggs of horseshoe crabs Limulus polyphemus on a sand and gravel beach were evaluated using data gathered on Delaware Bay, USA, from 18 May to 19 June 2004. Eggs were transplanted to pouches and buried in the foreshore for up to 6 wk. Viability and developmental stage were estimated as a function of oxygen and temperature gradients across the foreshore. These gradients were related to the characteristics of the intertidal foreshore sediments, beach water table changes, and frequency of inundation due to tide and swash/backwash processes. Results demonstrate the importance of interstitial temperature for development to larvae and the passive role of sediment characteristics on moisture retention and temperature. Percentage of eggs remaining in egg stage was similar across the foreshore, but more eggs developed to embryos at 0.45 of foreshore width, where moisture and gravel content were greater and interstitial temperature was lower. More eggs developed to larvae at 0.60 and 0.75 of foreshore width, where moisture and gravel content were less but interstitial temperature was higher. The beach above 0.75 of foreshore width came under the influence of wave action or full tidal inundation only during high wave heights or spring tides, and pouches at 0.75 of foreshore width were inundated only 19% of the time. Periodic wetting at this elevation did not reduce overall viability of the eggs. High wave energy events resulted in sediment activation depths to pouches at 0.30 of foreshore width, where loss of eggs due to wave activation was the most important control on the development of eggs. ?? Inter-Research 2008.

Marine Ecology Progress Series↗
USGS2017

Younger-Dryas cooling and sea-ice feedbacks were prominent features of the Pleistocene-Holocene transition in Arctic Alaska

Declining sea-ice extent is currently amplifying climate warming in the Arctic. Instrumental records at high latitudes are too short-term to provide sufficient historical context for these trends, so paleoclimate archives are needed to better understand the functioning of the sea ice-albedo feedback. Here we use the oxygen isotope values of wood cellulose in living and sub-fossil willow shrubs (δ 18 O wc ) ( Salix spp.) that have been radiocarbon-dated ( 14 C) to produce a multi-millennial record of climatic change on Alaska's North Slope during the Pleistocene-Holocene transition (13,500–7500 calibrated 14 C years before present; 13.5–7.5 ka). We first analyzed the spatial and temporal patterns of δ 18 O wc in living willows growing at upland sites and found that over the last 30 years δ 18 O wc values in individual growth rings correlate with local summer temperature and inter-annual variations in summer sea-ice extent. Deglacial δ 18 O wc values from 145 samples of subfossil willows clearly record the Allerød warm period (∼13.2 ka), the Younger Dryas cold period (12.9–11.7 ka), and the Holocene Thermal Maximum (11.7–9.0 ka). The magnitudes of isotopic changes over these rapid climate oscillations were ∼4.5‰, which is about 60% of the differences in δ 18 O wc between those willows growing during the last glacial period and today. Modeling of isotope-precipitation relationships based on Rayleigh distillation processes suggests that during the Younger Dryas these large shifts in δ 18 O wc values were caused by interactions between local temperature and changes in evaporative moisture sources, the latter controlled by seaice extent in the Arctic Ocean and Bering Sea. Based on these results and on the effects that sea-ice have on climate today, we infer that ocean-derived feedbacks amplified temperature changes and enhanced precipitation in coastal regions of Arctic Alaska during warm times in the past. Today, isotope values in willows on the North Slope of Alaska are similar to those growing during the warmest times of the Pleistocene-Holocene transition, which were times of widespread permafrost thaw and striking ecological changes.

Alaska↗
USGS2025

Spatiotemporal overlap of mallards with poultry farms is associated with greater risk of avian influenza wild bird spillover events

Animal movement influences local transmission and geographic spread of pathogens. Waterfowl are known reservoirs of pathogens, including H5 goose/Guangdong lineage (H5 GsGd) highly pathogenic avian influenza (HPAI). This HPAI virus lineage causes high rates of morbidity and mortality in domestic poultry and many wild bird species. Mallards ( Anas platyrhynchos ) are a generalist waterfowl species whose habitat largely overlaps with many other waterfowl and are considered effective spillover vectors of HPAI. To investigate the potential contribution of waterfowl to HPAI spillover, we used mallards as a proxy and measured the spatiotemporal overlap of 183 GPS-tagged mallards during 2021–2022 with respect to confirmed wild bird spillover events in United States (U.S.) poultry farms. Additionally, we estimated the probability of HPAI spillover events as a function of mallard overlap and poultry farm type. We found infrequent overlap instances between mallards and poultry farms; however, several of these overlap instances lasted > 5 days and up to 19 days. Population-level overlap with poultry farms was greatest during pre-breeding migration, followed by the breeding season. The probability of HPAI spillover was predicted to be greatest for commercial turkey farms, followed by backyard poultry farms. Importantly, farms overlapped by mallards were more than twice as likely to experience a spillover (i.e., increased risk probability), even in the absence of known mallard infection status at the time of overlap. These findings suggest that mallards (and/or other waterfowl) may be important contributors to HPAI spillover into poultry farms and that additional biosecurity measures may be needed. Because few instances of overlap occurred between mallards and farms with reported spillover events, tagged mallards are likely a proxy for other untagged waterfowl. Further studies of wild waterfowl interactions with poultry farms could improve understanding of how landscape characteristics influence spatial overlap, potentially informing which premises may require enhanced biosecurity measures.

Tennessee↗