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Water resources science of the U.S. Geological Survey in New York

The U.S. Geological Survey studies the effects of weather, climate, and man-made influences on groundwater levels, streamflow, and reservoir and lake levels, as well as on the ecological health of rivers, lakes, reservoirs, watersheds, estuaries, aquifers, soils, beaches, and wildlife. From these studies, the USGS produces high-quality, timely, and unbiased scientific research and data that are widely accessible and relevant to all levels of government, Tribal Nations, academic institutions, nongovernmental organizations, the private sector, and the general public. In New York, the U.S. Geological Survey works with other Federal agencies, State and municipal government, Tribal Nations, and the private sector to develop products that inform decision makers, legislators, and the general public.

New York↗

Coastal and marine science of the U.S. Geological Survey in St. Petersburg, Florida

The U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center (SPCMSC) in St. Petersburg, Florida, investigates processes that form and alter coastal and marine environments and the implications of these processes related to natural hazards, resource sustainability, and environmental change. The center is one of three facilities serving the mission of the USGS Coastal and Marine Hazards and Resources Program, an initiative authorized by Congress in 1962 that serves as the primary Federal program for marine geology and physical science research and is responsible for the Nation’s entire coastal and marine landscape. The center’s staff conducts scientific research around the globe to describe and deepen understanding of the processes that influence coastal and marine ecosystems, such as sandy beaches and barrier islands, salt marshes and estuaries, coral reefs, and the open ocean from the continental shelf to the deep sea. The center includes a diverse workforce of scientists, technicians, administrators, analysts, and technology and information specialists. This team works collaboratively to conduct and share robust scientific research. This document provides a glimpse into the center’s work to better understand the processes shaping coastal and marine environments across the Nation.

Florida↗

Geologic maps of the Sacramento-San Joaquin Delta, California

The Sacramento-San Joaquin Delta, the arm of the San Francisco Bay estuary that reaches into the Central Valley of California, differs from typical coastal-plain deltas in three important respects. First, rather than meeting the ocean individually and directly, all major waterways of this delta discharge via a single constricted outlet into a chain of estuarine bays and straits. Second, in the most common vertical sequence of deposits, peat and mud deposited in tidal marshes and swamps (tidal wetlands) directly overlie alluvium or eolian sand, a sequence recording a landward spread of tidal environments rather than the seaward migration of fluvial environments that is typical of coastal-plain deltas (Cosby, 1941, p. 43; Thompson, 1957, p. 12; Shlemon and Begg, 1975, p. 259; Atwater and Belknap, 1980). Finally, intensive human use has led to a peculiar set of conflicts involving rights to water and responsibilities for flood-control levees (Kockelman and other, 1982).

California↗

Map and diagrams showing the distribution, thickness, and textural characteristics of Holocene sediments, Penobscot Bay, Maine

This report illustrates, describes, and briefly discusses the discusses the distribution and characteristics of Holocene sediments in Penobscot Bay, Maine. Penobscot Bay is one of the major estuaries along the U.S. Atlantic coast. It constitutes as area of about 1,100 km 2 and extends more than 50 km inland from the Gulf of Maine. The bay is divided into three main passages by numerous islands (Index map and fig. 1).

Maine↗

Drift of surface and near-bottom waters of the San Francisco Bay system, California: March 1970 through April 1971

The San Francisco Bay system is a complex estuary in which there is an interplay between natural chemical and physical processes, and changes resulting from the works of man. The bay is used for recreation, water-borne commerce, fishing, domestic and industrial waste disposal, and esthetic pleasure. Because some of these uses are competitive, it is desirable to adequately predict the impact of man's activities on this natural system. The reliability of such predictions will be strengthened by long-term observations directed toward understanding the natural processes occurring in the bay. This study is a compilation of one aspect of the U.S. Geological Survey's continuing investigations of the San Francisco Bay system.

California↗

Method of analysis and quality-assurance practices for determination of pesticides in water by solid-phase extraction and capillary-column gas chromatography/mass spectrometry at the U.S. Geological Survey California District Organic Chemistry Laboratory, 1996-99

A method of analysis and quality-assurance practices were developed to study the fate and transport of pesticides in the San Francisco Bay-Estuary by the U.S. Geological Survey. Water samples were filtered to remove suspended-particulate matter and pumped through C-8 solid-phase extraction cartridges to extract the pesticides. The cartridges were dried with carbon dioxide and the pesticides were eluted with three cartridge volumes of hexane:diethyl ether (1:1) solution. The eluants were analyzed using capillary-column gas chromatography/mass spectrometry in full-scan mode. Method detection limits for pesticides ranged from 0.002 to 0.025 microgram per liter for 1-liter samples. Recoveries ranged from 44 to 140 percent for 25 pesticides in samples of organic-free reagent water and Sacramento-San Joaquin Delta and Suisun Bay water fortified at 0.05 and 0.50 microgram per liter. The estimated holding time for pesticides after extraction on C-8 solid-phase extraction cartridges ranged from 10 to 257 days.

California↗

Tampa Bay Integrated Science Pilot Study: wetland characterization

Coastal wetlands in Tampa Bay consist of mangrove forest and tidal salt marsh. Wetlands buffer storm surges, provide fish and wildlife habitat, and enhance water quality through the removal of water-borne nutrients and contaminants. Substantial areas of both mangrove and salt marsh have been lost to agricultural, residential and industrial development in this urban estuary. Wetlands restoration has been initiated in Tampa Bay. Baseline studies on the current condition of wetlands and historical and prehistorical information is needed for successful restoration planning and evaluation. A major objective of this component of the Tampa Bay pilot program was to characterize wetlands in Tampa Bay beginning with areas that differ in their degree of human-induced disturbance ( Fig. 1 ). The Alafia River area is urbanized, industrialized and dredged, whereas the Terra Ceia area has a history of agricultural use with associated soil berms and mosquito ditches, but has not been farmed for at least 20 years ( Fig. 2 ).

Open-File Report↗

Regional sediment budget of the Columbia River littoral cell, USA: Analysis of bathymetric- and topographic-volume change

In this Open-File Report we present calculations of changes in bathymetric and topographic volumes for the Grays Harbor, Willapa Bay, and Columbia River entrances and the adjacent coasts of North Beach, Grayland Plains, Long Beach, and Clatsop Plains for four intervals: pre-jetty - 1920s (Interval 1), 1920s - 1950s (Interval 2), 1950s - 1990s (Interval 3), and 1920s 1990s (Interval 4). This analysis is part of the Southwest Washington Coastal Erosion Study (SWCES), the goals of which are to understand and predict the morphologic behavior of the Columbia River littoral cell on a management scale of tens of kilometers and decades. We obtain topographic Light Detection and Ranging (LIDAR) data from a joint project by the U.S. Geological Survey (USGS), National Oceanic and Atmospheric Administration (NOAA), National Aeronautic and Space Administration (NASA), and the Washington State Department of Ecology (DOE) and bathymetric data from the U.S. Coast and Geodetic Survey (USC&GS), U.S. Army Corps of Engineers (USACE), USGS, and the DOE. Shoreline data are digitized from T-Sheets and aerial photographs from the USC&GS and National Ocean Service (NOS). Instead of uncritically adjusting each survey to NAVD88, a common vertical land-based datum, we adjust some surveys to produce optimal results according to the following criteria. First, we minimize offsets in overlapping surveys within the same era, and second, we minimize bathymetric changes (relative to the 1990s) in deep water, where we assume minimal change has taken place. We grid bathymetric and topographic datasets using kriging and triangulation algorithms, calculate bathymetric-change surfaces for each interval, and calculate volume changes within polygons that are overlaid on the bathymetric-change surfaces. We find similar morphologic changes near the entrances to Grays Harbor and the Columbia River following jetty construction between 1898 and 1916 at the Grays Harbor entrance and between 1885 and 1913 at the Columbia River entrance. The inlets and inner deltas eroded and the outer deltas moved offshore and accreted. The adjacent coasts experienced accretion over alongshore distances of tens of kilometers. North of the Grays Harbor entrance along North Beach and north of the Columbia River entrance along Long Beach the shoreface and the beach-dune complex mainly prograded, whereas south of the Grays Harbor entrance along Grayland Plains and south of the Columbia River entrance along Clatsop Plains the beach-dune complex above -10 m NAVD88 prograded and the shoreface between approximately -30 m and -10 m NAVD88 eroded. In the decades following jetty construction, the rates of erosion and accretion at the entrances decreased and the centers of deposition along the adjacent coasts moved away from the entrances. The rates of change have decreased, suggesting the systems are approaching dynamic equilibrium. Exceptions to this behaviour are the accretion of the beach-dune complex of Long Beach, the erosion of Cape Shoalwater, and the northward migration of the Willapa Bay ebb-tidal delta during all intervals. The net shoreline advance of Long Beach increases from 0.28 m/yr in pre-jetty conditions to 3.78 m/yr during Interval 4. The erosion of Cape Shoalwater and the northward migration of the Willapa Bay ebb-tidal delta are related to the northern migration of the Willapa Bay North Channel. Volume changes at the Grays Harbor, Willapa Bay, and Columbia River entrances and the Columbia River estuary are balanced against losses and gains due to littoral transport and sand supply from the Columbia River. Based on these sediment balances, we infer the following pathways: sand that eroded from the inlets and inner deltas at the Grays Harbor and Columbia River entrances moved offshore and northward to accrete the outer deltas and the beaches to the north; sand from the south flank of the Grays Harbor delta and shelf along Grayland Plains moved onshore to accrete the beach dune complex of Grayland Plains and moved northward to maintain accretion of the outer delta and the beach-dune complex of North Beach; sand that eroded from the south flank of the Columbia River delta and shelf along Clatsop Plains contributed to the accretion of the beach-dune complex of Clatsop Plains and the Columbia River outer delta. The net volume change for Interval 1 and 3 at the Grays Harbor entrance and for Interval 1 at the Columbia River entrance is erosion, whereas the net change for the other intervals is accretion. For the entire CRLC, there is a net loss of 185 Mm 3 for Interval 1, a net gain of 357 Mm 3 for Interval 2, and a net gain of 187 Mm 3 for Interval 3. These imbalances can be the result of incomplete bathymetric coverage of the bays and shoreface, uncertainties in the adjustments of vertical tidal datums, inconsistencies in the bathymetric data, and uncertainties in the sediment supply of the Columbia River.

Oregon, Washington↗

Contaminated sediments database for the Gulf of Maine

Bottom sediments in the Gulf of Maine and its estuaries have accumulated pollutants of many types, including metals and organic compounds of agricultural, industrial, and household derivation. Much analytical and descriptive data has been obtained on these sediments over the past decades, but only a small effort had been made, prior to this project, to compile and edit the published and unpublished data in forms suitable for a variety of users. The Contaminated Sediments Database for the Gulf of Maine provides a compilation and synthesis of existing data to help establish the environmental status of our coastal sediments and the transport paths and fate of contaminants in this region. This information, in turn, forms one of the essential bases for developing successful remediation and resource management policies.

Open-File Report↗

Preliminary analysis of cores from north San Francisco Bay, California

During the mid-to late-1800's, large quantities of tailings from hydraulic gold mining in the Sierra Nevada were deposited in San Francisco Bay (Gilbert, 1917; Jaffe et al., 1998; Capiella et al., 1999). This rapid deposition also choked river systems and deposited mercury-contaminated sediments in the rivers and Bay. Hydraulic mining was stopped in 1884 by a California Supreme Court decision. Deposition in the Bay slowed in the late 1800's and early 1900's as a result of this decrease in sediment supply (Jaffe et al., 1998; Capiella et al., 1999). During the mid-1900's, sediment supply was further reduced by water works projects (dams, diversions, etc.), creating an erosional system in the study area by the late 1900's. The re-working of these sediments poses environmental and biological concerns regarding mercury in the bay. The location of these deposits is important for understanding the health of the bay waters. In March 2000, the U.S. Geological Survey collected sediment cores in the study area to determine the location of mercury-contaminated hydraulic mining debris. The study area (Figure 1) comprises 400 km2 and consists of San Pablo Bay and Suisun Bay, both of which are part of the San Francisco Bay estuary. Grizzly Bay, a subembayment of Suisun Bay, is also part of the study area. For the purpose of this report the term Suisun Bay will be used collectively for both areas. The present channel system in Suisun Bay is composed of three channels that flow through the bay. The primary channel runs in the southern section of Suisun Bay. A smaller channel flows between Roe Island and Ryer Island. The deepest channel flows through Suisun Cutoff, north of Ryer Island, and past Grizzly Bay. All three channels join at Carquinez Strait where they continue through the southern section of San Pablo Bay, and into San Francisco Bay. The average depths in San Pablo and Suisun Bays at mean sea level are 3.7 m and 5.8 m, respectively (Smith et al., 2002).

California↗

African dust carries microbes across the ocean: are they affecting human and ecosystem health?

Atmospheric transport of dust from northwest Africa to the western Atlantic Ocean region may be responsible for a number of environmental hazards, including the demise of Caribbean corals; red tides; amphibian diseases; increased occurrence of asthma in humans; and oxygen depletion (eutrophication) in estuaries. Studies of satellite images suggest that hundreds of millions of tons of dust are trans-ported annually at relatively low altitudes across the Atlantic Ocean to the Caribbean Sea and southeastern United States. The dust emanates from the expanding Sahara/Sahel desert region in Africa and carries a wide variety of bacteria and fungi. The U.S. Geological Survey, in collaboration with the NASA/Goddard Spaceflight Center, is conducting a study to identify microbes--bacteria, fungi, viruses--transported across the Atlantic in African soil dust. Each year, millions of tons of desert dust blow off the west African coast and ride the trade winds across the ocean, affecting the entire Caribbean basin, as well as the southeastern United States. Of the dust reaching the U.S., Florida receives about 50 percent, while the rest may range as far north as Maine or as far west as Colorado. The dust storms can be tracked by satellite and take about one week to cross the Atlantic.

Open-File Report↗

A Synopsis of Technical Issues for Monitoring Sediment in Highway and Urban Runoff

Accurate and representative sediment data are critical for assessing the potential effects of highway and urban runoff on receiving waters. The U.S. Environmental Protection Agency identified sediment as the most widespread pollutant in the Nation's rivers and streams, affecting aquatic habitat, drinking water treatment processes, and recreational uses of rivers, lakes, and estuaries. Representative sediment data are also necessary for quantifying and interpreting concentrations, loads, and effects of trace elements and organic constituents associated with highway and urban runoff. Many technical issues associated with the collecting, processing, and analyzing of samples must be addressed to produce valid (useful for intended purposes), current, complete, and technically defensible data for local, regional, and national information needs. All aspects of sediment data-collection programs need to be evaluated, and adequate quality-control data must be collected and documented so that the comparability and representativeness of data obtained for highway- and urban-runoff studies may be assessed. Collection of representative samples for the measurement of sediment in highway and urban runoff involves a number of interrelated issues. Temporal and spatial variability in runoff result from a combination of factors, including volume and intensity of precipitation, rate of snowmelt, and features of the drainage basin such as area, slope, infiltration capacity, channel roughness, and storage characteristics. In small drainage basins such as those found in many highway and urban settings, automatic samplers are often the most suitable method for collecting samples of runoff for a variety of reasons. Indirect sediment-measurement methods are also useful as supplementary and(or) surrogate means for monitoring sediment in runoff. All of these methods have limitations in addition to benefits, which must be identified and quantified to produce representative data. Methods for processing raw sediment samples (including homogenization and subsampling) for subsequent analysis for total suspended solids or suspended-sediment concentration often increase variance and may introduce bias. Processing artifacts can be substantial if the methods used are not appropriate for the concentrations and particle-size distributions present in the samples collected. Analytical methods for determining sediment concentrations include the suspended-sediment concentration and the total suspended solids methods. Although the terms suspended-sediment concentration and total suspended solids are often used interchangeably to describe the total concentration of suspended solid-phase material, the analytical methods differ and can produce substantially different results. The total suspended solids method, which commonly is used to produce highway- and urban-runoff sediment data, may not be valid for studies of runoff water quality. Studies of fluvial and highway-runoff sediment data indicate that analyses of samples by the total suspended solids method tends to under represent the true sediment concentration, and that relations between total suspended solids and suspended-sediment concentration are not transferable from site to site even when grain-size distribution information is available. Total suspended solids data used to calculate suspended-sediment loads in highways and urban runoff may be fundamentally unreliable. Consequently, use of total suspended solids data may have adverse consequences for the assessment, design, and maintenance of sediment-removal best management practices. Therefore, it may be necessary to analyze water samples using the suspended-sediment concentration method. Data quality, comparability, and utility are important considerations in collection, processing, and analysis of sediment samples and interpretation of sediment data for highway- and urban-runoff studies. Results from sediment studies must be comparable and readily transf

Open-File Report↗

Hydrologic Data Collected in Small Watersheds on Mount Desert Island, Maine, 1999-2000

The US Geological Survey, in cooperation with Acadia National Park, began collecting data for two projects related to nutrient loading to coastal estuaries on Mount Desert Island in 1999. Streamflow data from 16 sites and chemical concentration data from 14 sites in 13 small watersheds on the island are presented in this report. Data were collected from January 1999 to September 2000. Continuous streamflow data from April 1, 1999 to September 30, 2000 at 3 gages in these watersheds are presented. Graphs and tables of 264 monthly streamflow and waterquality analyses from January 1999 to September 2000 at 14 monitoring stations also are presented.

Open-File Report↗

Sidescan sonar imagery and surficial geologic interpretation of the sea floor off Branford, Connecticut

The U.S. Geological Survey (USGS), in cooperation with the National Oceanic and Atmospheric Administration (NOAA) and the Connecticut Department of Environmental Protection (CT DEP), Figure 1 - Map of Study Areahas produced detailed geologic maps of the sea floor in Long Island Sound, a major East Coast estuary surrounded by the most densely populated region of the United States. These studies have built upon cooperative research between the USGS and the State of Connecticut that was initiated in 1982. The current phase of this research program is directed toward studies of sea-floor sediment distribution, processes that control sediment distribution, nearshore environmental concerns, and the relation of benthic community structures to the sea-floor geology. Anthropogenic wastes, toxic chemicals, and changes in land-use patterns resulting from residential, commercial, and recreational development have stressed the environment of the Sound, causing degradation and potential loss of benthic habitats (Koppelman and others, 1976; Long Island Sound Study, 1994). Detailed maps of the sea floor are needed to help evaluate the extent of adverse impacts and to help wisely manage resources in the future. Therefore, in a continuing effort to better understand Long Island Sound, we are constructing and interpreting sidescan sonar mosaics (complete-coverage acoustic images of the sea floor) within specific areas of special interest (Poppe and Polloni, 1998). The mosaic presented herein, which was produced during survey H11043 by NOAA 's Atlantic Hydrographic Branch, covers approximately 41.1 km 2 of the sea floor in north-central Long Island Sound off Branford, Connecticut. Shell bed provides shelter for juvenille skate.The mosaic and its interpretation serve many purposes, including: (1) defining the geological variability of the sea floor, which is one of the primary controls of benthic habitat diversity; (2) improving our understanding of the processes that control the distribution and transport of bottom sediments and the distribution of benthic habitats and associated infaunal community structures; and (3) providing a detailed framework for future research, monitoring, and management activities. The sidescan sonar mosaic also serves as a base map for subsequent sedimentological, geochemical, and biological observations, because precise information on environmental setting is important for selection of sampling sites and for appropriate interpretation of point measurements.

Connecticut↗

Submarine ground-water discharge and its role in coastal processes and ecosystems

Submarine ground-water discharge (SGD) has recently been recognized as a phenomenon that can strongly influence coastal water and geochemical budgets and drive ecosystem change. For example, the discharge of nutrient-enriched ground water into coastal waters may contribute significantly to eutrophication and blooms of harmful algae. Similarly, the quantity of SGD can also directly affect the availability of fresh water to coastal communities, impact fragile coastal ecosystems such as estuaries and coral reefs, and influence geomorphology of shoreline features. Moore raised awareness of the global importance of SGD and much effort has been devoted to developing new tracer techniques and methods for the identification and quantification of SGD. Because the discharge of coastal ground water commonly occurs as diffuse seepage rather than focused discharge through identifiable springs, assessing SGD has remained difficult for both oceanographers and hydrologists. Through national and international research programs, Burnett, Moore, Charette, and others have developed a rigorous, systematic approach for quantifying SGD using a wide assortment of tracers and methods. Intercalibration experiments, such as those conducted in coastal waters off Australia, Brazil, and Long Island, NY, demonstrate that careful measurements can accurately quantify SGD, confirm some of the driving mechanisms (e.g. climatic and tidal forcing), and constrain the spatial and temporal scales at which these mechanisms operate. Now that approaches for rigorously quantifying SGD are becoming better established, scientists can now begin to investigate the wide variety of coastal processes affected by SGD.

Open-File Report↗

An autonomous, electromagnetic seepage meter to study coastal groundwater/surface-water exchange

The bi-directional exchange of groundwater with coastal surface waters may influence not only coastal-water and geochemical budgets, but may also impact and direct coastal ecosystem change. For example, the widespread discharge of nutrient-enriched submarine groundwater into an estuary or lagoon may contribute directly to the onset and duration of eutrophication, as well as the development of harmful algal/bacterial blooms. Most often, this submarine groundwater discharge (SGD) (defined here as a composite of meteoric, connate and sea water) occurs as hard-to-constrain diffuse seepage, rather than as focused discharge either through vent or collapse features. As a result, quantifying SGD rates has remained difficult for both oceanographers and hydrologists alike. This report describes an adaptation of an old tool, the Lee-type manual seepage meter, with a state-of-the-art electromagnetic flow meter that enables rapid, autonomous, bi-directional measurements of fluid exchange rates across the sediment/water interface. When such measurements are coupled and interpreted with surface and groundwater pressure, salinity and temperature data, as well as other complementary measurements such as excess watercolumn 222 Rn activities, then realistic groundwater/surface-water exchange rates can be obtained in dynamic coastal environments.

Open-File Report↗

Gulf of Mexico Integrated Science - Tampa Bay Study Overview

The U.S. Geological Survey's Gulf of Mexico Integrated Science - Tampa Bay Study combines the expertise of federal, state, and local partners to address some of the most pressing ecological problems of the Tampa Bay estuary. This project serves as a template for integrated research projects in other coastal ecosystems in the nation. The Tampa Bay Study focuses on the scientific needs of the Bay, as identified by resource managers.

Open-File Report↗

Gulf of Mexico integrated science - Tampa Bay study, the impact of groundwater and contaminants on Tampa Bay

Despite the recreational and economic value of coastal bays and estuaries, these ecosystems are often among our most 'troubled' natural environments. Urbanization, agriculture, mining, and shipping are just a few activities that can have a profound and lasting impact on the coastal zone. In order to maintain a healthy coastal ecosystem, it is crucial to develop reasonable management practices around expert scientific information. We still have much to learn about the quantity and quality of groundwater being discharged into Tampa Bay, Florida. We also need to improve our knowledge of a wide range of contaminants entering the bay and must be able to determine where they accumulate in seafloor sediments. Such buried contaminants can potentially be harmful to biota if they are released to the water column. U.S. Geological Survey (USGS) scientists and research partners from the University of South Florida (USF), the University of Florida (UF), and the Florida Marine Research Institute (FMRI) are mapping sources of groundwater, measuring groundwater flow into Tampa Bay, and assessing the impact of contaminants and sediments on bay water quality and ecosystem health.

Open-File Report↗