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1,665 records · Page 91Linked to original sources
USGS2025

Microbial ecology of permafrost soils: Populations, processes, and perspectives

Permafrost microbial research has flourished in the past decades, due in part to improvements in sampling and molecular techniques, but also the increased focus on the permafrost greenhouse gas feedback to climate change and other ecological processes in high latitude and alpine permafrost soils. Permafrost microorganisms are adapted to these extreme environments and remain active at low temperatures and when resources are limited. They are also an important component of global elemental cycles as they regulate organic matter turnover and greenhouse gas production, particularly as permafrost thaws. Here we review the permafrost microbiology literature coupled with an exploration of its historical aspects, with a particular focus on a new understanding advanced by molecular biology techniques. We further identify knowledge gaps and ways forward to improve our understanding of microbial contributions to ecosystem biogeochemistry of permafrost-affected systems.

Permafrost and Periglacial Processes↗
USGS2024

Rock sample photogrammetry

This step-by-step protocol describes the photogrammetry process used by the U.S. Geological Survey Spokane Imaging Lab (SPIMG) lab to create 3D models of geologic samples. Steps related to photographing small objects are applicable to photogrammetry in general, however, SPIMG-specific steps involving lab hardware and software may not be.

Protocols.io↗
USGS2026

Cruise summary—Samoa Basin abyssal mapping—Box coring leg, Pago Pago, Territory of American Samoa to Pago Pago, American Samoa, April 11– May 1, 2026

Expedition Summary U.S. Geological Survey scientists led a box coring effort to the Samoa Basin to characterize minerals and the surrounding abyssal sediments and fauna. Thirty-eight box cores were deployed between April 13, 2026, and April 28, 2026. Thirty-six box cores recovered sufficient material to determine nodule density, and 35 recovered sufficient material for subcores to be collected. The purpose of this Data Report is to provide a summary of samples collected, initial results that were obtained shipboard, and briefly mention planned future analyses from this expedition.

Data Report↗
USGS1991

Effects of septic-tank effluent on ground-water quality in northern Williamson County and southern Davidson County, Tennessee

An investigation of the potential contamination of ground water from septic tank systems blasted in bedrock in Williamson and Davidson Counties, Tennessee, was conducted during 1988-89. Water samples were collected from domestic and observation wells, springs, and surface-water sites in a residential subdivision in the northern part of Williamson County near Nashville. The subdivision has a high density of septic-tank field lines installed into blasted bedrock Water samples also were collected from a well located in an area of Davidson County where field lines were installed in 5 feet of soil. Samples were analyzed for major inorganic constituents, nutrients, total organic carbon, optical brighteners, and bacteria. Although results of analyses of water samples from wells indicate no effect of septic-tank effluent on ground-water quality at these sites, water from two springs located downgradient from the subdivision had slightly larger concentrations of nitrite plus nitrate (2.2 and 2.7 milligrams per liter N), and much larger concentrations of fecal coliform and fecal streptococci bacteria (2,000 to 3,200 and 700 to 900 colonies per 100 milliliters of sample, respectively), than other wells and springs sampled during 1988. Water from one of these springs contained optical brighteners, which indicates that septic-tank effluent is affecting ground-water quality.

Tennessee↗
USGS2026

Structural evolution of iron coordination in proteins across Earth’s oxygenation history

Protein metal-binding sites support essential biological functions shaped by protein fold, subunit interactions, and cofactor chemistry. Because these sites encode both biochemical function and environmental constraint, they offer a route to connect protein evolution with changes in Earth’s surface environment through time. Of particular interest is iron (Fe), the most widely used metal in biology and a cofactor central to both anaerobic and aerobic metabolism. Here, we systematically compare the immediate chemical environments of functionally essential Fe-binding sites in three-dimensional protein structures to test whether Fe coordination spheres differ across oxygen contexts. Using a curated dataset of experimentally determined structures, we identify a clear shift in the local chemistry of Fe-binding environments from anaerobic to aerobic proteins. Aerobic Fe sites are significantly more hydrophilic than anaerobic ones, and amino-acid composition analyses show reduced cysteine use in aerobic Fe-binding neighborhoods. These patterns suggest that as Earth’s surface environments became more oxygenated, proteins retained Fe as a core redox metal while reconfiguring local coordination chemistry in ways less vulnerable to oxidative damage. More broadly, this study introduces and applies the Coordination Sphere Analysis and Comparison (CSAC) workflow, an open and archived Python workflow for extracting local metal-binding environments from structure datasets, providing a framework for linking metalloprotein structure to evolutionary and geobiological transitions across Earth history.

Discover Life↗
USGS2026

Alternative approaches to dryland reclamation enhance vegetation cover and soil stability at a former uranium mine

Introduction Conventional reclamation methods to recover dryland ecosystems after mineral extraction often have low success. Alternative reclamation techniques may help overcome the many challenges to establishing persistent native vegetation and stable soils. Objectives Compare conventional reclamation approaches that focus primarily on soil stabilization to alternative approaches that may improve native ecosystem restoration at the Kanab North Mine in northern Arizona. Methods In a fully crossed experiment, conventional seed mix (native and non-native species) and seeding methods (drill-seeding) were compared to alternative practices, including a native-only seed mix, connectivity modifiers (ConMods) with hand seeding, and a biocrust inoculation. Restoration metrics like plant establishment, species composition, soil surface cover and stability, biocrust establishment, and near-surface wind-driven sediment were monitored over the first 5 years post-reclamation. Results While all restoration metrics improved with time, compared to traditional methods, ConMods increased total, graminoid, and native plant species cover, and the native-only seed mix increased woody, native, and perennial species cover. Biocrust inoculation increased late-successional biocrust development, but biocrusts only persisted over 5 years in combination with ConMods. Soil stability increased in all treatments, but both ConMods and biocrust inoculation increased stability compared to traditional practices. Conclusion Overall, alternative approaches to reclamation tested here (ConMods, native seed, and biocrust inoculation) were more effective than traditional practices at increasing total plant cover, facilitating biocrust establishment, and promoting soil stability after uranium mine reclamation.

Arizona↗
USGS2026

Multi-objective optimization of a hydro-economic model in an over-allocated agricultural basin

Groundwater depletion for agricultural irrigation poses significant environmental and economic challenges. This study introduces a proof-of-concept that combines hydro-economic modeling, scenario-based modeling, and multi-objective optimization to manage pumping curtailment in an over-allocated basin in the western United States. Three optimization scenarios were evaluated, each offering different degrees of management flexibility. Results reveal that scenarios with finer spatial resolution achieved greater environmental benefits per unit profit loss. Additionally, strategies allowing fractional reductions in curtailed wells–rather than complete shutdowns based on water rights seniority–substantially improved efficiency, highlighting the value of increased decision-making flexibility. Although scenario testing can aid stakeholder engagement and strategy exploration, multi-objective optimization provides a systematic framework to quantify tradeoffs between competing objectives. This combined approach demonstrates promise for building consensus and supporting the design of sustainable water management strategies that balance agricultural livelihoods with ecosystem preservation.

Oregon↗
USGS2024

A robust quantitative method to distinguish runoff-generated debris flows from floods

Debris flows and floods generated by rainfall runoff occur in rocky mountainous landscapes and burned steeplands. Flow type is commonly identified post-event through interpretation of depositional structures, but these may be poorly preserved or misinterpreted. Prior research indicates that discharge magnitude is commonly amplified in debris flows relative to floods due to volumetric bulking and increased frictional resistance. Here, we use this flow amplification to develop a metric ( Q* ) to separate debris flows from floods based on the ratio of observed peak discharge to the theoretical maximum water discharge from rainfall runoff. We compile 642 observations of floods and debris flows and demonstrate that Q* distinguishes flow type to ∼92% accuracy. Q* allows for accurate identification of debris flows through simple channel cross-section surveys rather than through qualitative interpretation of deposits, and therefore should increase the performance of models and engineered structures that require accurate flow-type observations.

Geophysical Research Letters↗
USGS2025

Memory and jamming in fault zone sediments

Many subsurface processes involve transitions in granular material states, from arrested to creeping to flowing. Experiments and frameworks for idealized systems reveal that granular fabrics develop during shearing, co-evolve with applied stress, and govern such transitions. We use microtomography to test whether fabrics at two San Andreas fault sites reflect slip history and whether idealized frameworks extend to nature. Near-surface sediments within the fault zone transition between deformation patterns over the seismic cycle, including bulk/localized grain re-arrangements, individual grain fracturing, and localized zones of fracturing. Aseismic and co-seismic shearing produce distinct preferred grain orientations. Co-seismic fabrics can be preserved after centuries of aseismic strain, aseismic fabrics may be overprinted, and grain size and coordination number influence the fabrics. Idealized frameworks, namely anisotropic critical state theory, frictional jamming, and material memory, can explain our observations, and fault zone sediments likely undergo cycles of memory creation and erasure that influence rigidity spatiotemporally.

California↗
USGS2026

Dynamic coupling between faulting, rifting and magmatism during 2021-2025 unrest on Reykjanes Peninsula, Iceland

Interactions among faulting, earthquakes, and eruptions are fundamental to plate tectonics and hazard forecasting yet rarely observed along mid-ocean ridges. On Iceland's Reykjanes Peninsula, seismotectonic–volcanic unrest resumed after nearly 800-year hiatus, providing an opportunity to observe these interactions during 2021–2025 activity. By integrating high-resolution seismicity, focal mechanisms, satellite geodesy, surface deformation, and eruption data, we document ∼4 m of total extension accommodated through 14 rifting episodes. The largest, in 2023, involved graben reactivation and diking, with seismic swarms and earthquake faulting that matched the surface ruptures, where strike-slip faulting preceded normal-faulting earthquakes and extension. The accrued extension was released by extension fractures triggered by magma accumulation. Long-term observations show no correlation between erupted magma volume, seismicity, and crustal extension. This highlights dynamic relation between rifting, faulting, and magmatism in transtensional settings and their implications for hazard assessment.

Reykjanes Peninsula↗
USGS2025

Water-resources inventory and assessment at Katahdin Woods and Waters National Monument

The U.S. Geological Survey, in cooperation with the National Park Service, prepared a water-resources inventory and assessment for Katahdin Woods and Waters National Monument (KAWW). This compilation includes published and publicly accessible hydrologic data and resource assessments of streams, rivers, ponds, lakes, wetlands, vernal pools, and groundwater in and near KAWW. It also includes reports and datasets summarizing attributes of KAWW’s hydrologic infrastructure, such as stream crossings, dams, wastewater discharge plants, groundwater monitoring wells, and U.S. Geological Survey streamflow-gaging stations. Descriptions of data and details of current limitations in available datasets are included. Wetland, groundwater, streamflow, and water-quality information are all limited. Hydrography data are available; however, there are limited ground-truth data. Accurate streamlines within KAWW were developed from light detection and ranging (lidar) as a part of this work. Hydrologic infrastructure information is available from multiple sources; however, differences exist among the datasets. Datasets are summarized in appendix 1.

Maine↗
USGS2025

Landslide-channel feedbacks amplify channel widening during floods

Channel widening is a major hazard during floods, particularly in confined mountainous catchments. However, channel widening during floods is not well understood and not always explained by hydraulic variables alone. Floods in mountainous regions often coincide with landslides triggered by heavy rainfall, yet landslide-channel interactions during a flood event are not well known or documented. Here we demonstrate with an example from the Great Colorado Flood in 2013, a 1000 year precipitation event, how landslide-channel feedbacks can substantially amplify channel widening and flood risk. We use a combination of DEM differencing, field analysis, and multiphase flow modeling to document landslide-channel interaction during the flood event in which sediment delivered by landslides temporarily dammed the channel before failing and generating substantial channel widening. We propose that such landslide-flood interactions will become increasingly important to account for in flood hazard assessment as flooding and landsliding both increase with extreme rainfall under climate change.

Colorado↗
USGS2025

Strong shaking from past Cascadia Subduction Zone earthquakes encoded in coastal landforms

Strong earthquakes along subduction zones are often devastating events, but sparse records along some tectonic margins limit our understanding of seismic hazards. Constraining shaking intensities is critical, especially in subduction zones with infrequent but large-magnitude earthquakes like the Cascadia Subduction Zone (CSZ), where the lack of recorded ground motions has led to uncertainty in the severity and potential impacts of future earthquakes. Here we fill this observational gap with a novel inventory of quantitative estimates of past shaking intensities from geotechnical modeling of coastal landforms. One hundred fifty-four deep-seated landslides and 65 fragile geologic features constrain minimum and maximum peak ground accelerations, respectively. These estimates are broadly consistent with model predictions of M9 ruptures, suggesting strong shaking of 0.4–0.8 g during past CSZ earthquakes. Local discrepancies between our geologic shaking constraints and earthquake simulations may inform past rupture behavior, leading to better predictions of shaking intensity for future earthquakes.

California, Oregon, Washington↗
USGS2026

Temperate wetlands lose climate-cooling capacity under warming

Temperate inland wetlands have long been viewed as climate regulators, with sustained CO₂ sequestration offsetting continuous CH₄ emissions over centennial–millennial timescales. However, the net climatic effect of these opposing fluxes remains uncertain under anthropogenic warming as they differ in both magnitude and atmospheric lifetime. We combine 19,000 CH₄ chamber measurements from 202 temperate inland wetlands with carbon burial rates from 16 dated sediment cores in North America’s Prairie Pothole Region to estimate greenhouse gas dynamics over two centuries. Here we show that CH₄ emissions rise by ~1.39 kg CH₄ ha⁻¹ yr⁻¹ over the historical period and are projected to approach 950 kg CH₄ ha⁻¹ yr⁻¹ under high-forcing scenarios by 2100, while CO₂ sequestration is expected to decline by ~0.3 kg CO₂ ha⁻¹ yr⁻¹, driving a shift toward persistent net CO₂-equivalent source behaviour and a weakening of the long-term cooling effect that wetlands have provided under natural conditions.

Prairie Pothole Region↗
USGS2025

Zircon as a pathfinder to REE mineralization

Carbonatites and alkaline silicate rocks are major primary sources of the rare earth elements (REE) and other critical metals, such as Nb. Despite the economic significance of these rocks, their formation and the processes of REE enrichment are poorly understood. Here, statistical analysis of a global dataset demonstrates that zircon geochemistry is a powerful recorder of REE metallogenesis and a potential pathfinder for REE deposits. Zircons from REE and Nb fertile intrusions lack Eu anomalies and have elevated Gd/Yb and Th/Yb, indicating they crystallised from magmas that originated from deep, oxidised and enriched mantle sources. Complexes with Nb enrichment have low U/Nb, reflecting an enriched mantle source, whereas high U/Nb in REE-only fertile intrusions suggest a subduction-metasomatised mantle source. Machine learning models demonstrate high accuracy in classifying zircon from barren and fertile deposits. Classification of detrital zircons shows that REE-enriched deposits correlate with supercontinent assembly, whereas Nb fertile complexes are associated with supercontinent breakup. This approach offers a new, mineral to global scale, petrologic and exploration tool that enhances understanding of REE metallogenesis.

Geochemical Perspectives Letters↗
USGS2024

Metal mobilization from thawing permafrost to aquatic ecosystems is driving rusting of Arctic streams

Climate change in the Arctic is altering watershed hydrologic processes and biogeochemistry. Here, we present an emergent threat to Arctic watersheds based on observations from 75 streams in Alaska’s Brooks Range that recently turned orange, reflecting increased loading of iron and toxic metals. Using remote sensing, we constrain the timing of stream discoloration to the last 10 years, a period of rapid warming and snowfall, suggesting impairment is likely due to permafrost thaw. Thawing permafrost can foster chemical weathering of minerals, microbial reduction of soil iron, and groundwater transport of metals to streams. Compared to clear reference streams, orange streams have lower pH, higher turbidity, and higher sulfate, iron, and trace metal concentrations, supporting sulfide mineral weathering as a primary mobilization process. Stream discoloration was associated with dramatic declines in macroinvertebrate diversity and fish abundance. These findings have considerable implications for drinking water supplies and subsistence fisheries in rural Alaska.

Alaska↗
USGS2026

Age and colony variation in Adélie penguin metapopulation vital rates: Insights from a 25-year mark–recapture study

Understanding how vital rates vary with age, life-history stage, and among populations is fundamental for predicting the demographic consequences of environmental change, especially in longer-lived species with complex life histories. These species often exhibit delayed maturity and iteroparity, making nuanced demographic insights critical for assessing their long-term viability. This study investigated age- and colony-related variation in Adélie penguin vital rates including survival, recruitment, and breeding propensity. We used mark–recapture data collected over 25 years (1996–2020) from three Adélie penguin breeding colonies that differed in population sizes and trends but comprised a metapopulation located at capes Royds, Bird, and Crozier on Ross Island, Antarctica. We used multi-state models to estimate survival and detection rates relative to reproductive state and breeding colony and estimated transition probabilities reflecting movements between reproductive states and colonies. Apparent survival varied by reproductive state, colony, and age and averaged 0.80 (SD = 0.02) at Bird, and 0.72 (SD = 0.03) and 0.73 (SD = 0.03) at Crozier and Royds, respectively, for pre-breeders age 2–7 years with strong declines in pre-breeder survival after age 8. We observed less age-related variation in survival of breeders and non-breeders, but we observed differences between colonies with lower survival for breeders (0.72 to 0.80) compared to non-breeders (0.75 to 0.82). The average probability of surviving the first 2 years after fledging ranged from 0.43 (SD = 0.14) at Royds and Crozier (0.43, SD = 0.10) to 0.55 (SD = 0.15) at Bird. Movement between colonies was highest for pre-breeders (0.00%–12.00% depending on age and colony) and lowest for breeders (<0.20%). We observed the lowest age-related recruitment rates at Royds, with recruitment at Crozier almost twice as high, and intermediate at Bird. Breeding propensity was highest at Crozier and lowest at Bird. Colony-specific variation in vital rates likely contributed differently to population trajectories, suggesting that care must be taken to extrapolate vital rate estimates across colonies even within a metapopulation. These findings also highlight the importance of considering age, life-history stage, and geographic variation when assessing population vital rates in species with complex life histories.

Frontiers in Ecology and Environment↗
USGS2026

Extreme precipitation variability and soil texture controls on water-table response

Extreme precipitation events (EPEs), a key class of hydrometeorological extremes, are intensifying globally under climate change; however, their effects on water-table dynamics across varying soil textures remain poorly understood. To better understand the impacts of EPEs, we conducted one-dimensional modeling to evaluate water-table response time, displacement, recession time, and total recharge under EPEs of 0.20 m, 0.40 m, and 0.60 m amounts, applied over 1-, 7-, and 20-day durations across twelve soil textures. The results show that coarse soils (i.e., sand) respond within days, while fine soils (i.e., clay) may take over 200 days. Water-table displacement ranged from 0.30 to 1.64 m and increased with EPE magnitude. The time it took for water tables to recede ranged from 1.2 to 3.0 years. A first-order estimate of total possible recharge, calculated from porosity and displacement, ranged from 17% (clay) to 97% (sand), averaging ~63% across soil textures. These findings highlight that recharge is primarily governed by EPE magnitude and soil properties, not event duration. This modeling effort provides new insight into how soil texture modulates groundwater response to extreme precipitation, informing future water budget and resilience assessments.

Water↗