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Results for “Philosophical Transactions of the Royal Society B: Biological Sciences”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

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1,687 records · Page 91Linked to original sources
USGS2026

A deep dive into subduction zones and the Japan Trench

Deep beneath the ocean, giant slabs of rock slide beneath one another in areas called subduction zones. These powerful movements shape the planet by building mountains, creating fiery volcanoes, and even causing huge earthquakes. Scientists study subduction zones to understand why these natural events happen and where and how they might occur so we can be better prepared. One important subduction zone is the Japan Trench, where a big earthquake happened in 2011. To learn more about subduction zones, scientists go on ocean drilling expeditions. They sail on research ships, drill into the seafloor, and collect rock samples. These samples help scientists understand what happened in the past and how subduction zones work. In turn, this information helps communities better understand and prepare for future earthquakes.

Frontiers for Young Minds↗
USGS2026

Metallurgical coal—Deposits, production, resources, market dynamics, and supply chain risks

Plain Language Summary Metallurgical coal (met coal; consumed to produce coke for steelmaking) must meet specific chemical and physical specifications. In 2023, the conterminous United States produced 66 million short tons (mst) of met coal, consumed 15.85 mst domestically, exported 51.1 mst, and imported 0.7 mst. Most met coal was produced in the Appalachian Basin, but there are also resources that meet the specifications for met coal in the Western United States.

conterminous United States↗
USGS2024

Distinguishing natural sources from anthropogenic events in seismic data

As seismic data are increasingly used to investigate a diverse range of subsurface phenomena beyond regular fast-rupturing earthquakes (Peng and Gomberg, 2010; Beroza and Ide, 2011), it is important to acknowledge that human-generated ground vibrations may be mistaken for naturally generated subsurface processes (Larose et al., 2015; Li et al., 2018). Correct discrimination of natural processes from anthropogenic noise is especially pressing given the trend in seismic detection research toward automated algorithms and machine learning methods (Yoon et al., 2015; Kong et al., 2019;Mousavi and Beroza, 2022) and the growth in seismic data collection in new environments such as urban and industry settings (e.g., Díaz et al.,2017).

Seismological Research Letters↗
USGS2026

A practical framework for identifying genetic subpopulations and ESUs: Insights for IUCN assessments and broader management

Species conservation assessments evaluate extinction risk, and recovery potential, advancing species persistence through guiding resource prioritization and planning. Assessment frameworks, including the International Union for Conservation of Nature Red List and Green Status of Species, typically focus on species as a whole. Importantly, they do not routinely account for genetically distinct units or do not have standardized methods of unit delineation. This limits the representation of genetically distinct components, including adaptive genetic diversity that underpins long-term resilience and recovery. Incorporating standardized within-species units like subpopulations and Evolutionarily Significant Units (ESUs) into species assessments could help address this oversight. However, identifying and delineating such units remain challenging, particularly when molecular data are limited. Here, we propose a flexible framework that integrates molecular and non-molecular evidence to identify both subpopulations and ESUs across taxa, providing a practical tool to incorporate within-species diversity into conservation assessments.

BioScience↗
USGS2026

Temperate wetlands lose climate-cooling capacity under warming

Temperate inland wetlands have long been viewed as climate regulators, with sustained CO₂ sequestration offsetting continuous CH₄ emissions over centennial–millennial timescales. However, the net climatic effect of these opposing fluxes remains uncertain under anthropogenic warming as they differ in both magnitude and atmospheric lifetime. We combine 19,000 CH₄ chamber measurements from 202 temperate inland wetlands with carbon burial rates from 16 dated sediment cores in North America’s Prairie Pothole Region to estimate greenhouse gas dynamics over two centuries. Here we show that CH₄ emissions rise by ~1.39 kg CH₄ ha⁻¹ yr⁻¹ over the historical period and are projected to approach 950 kg CH₄ ha⁻¹ yr⁻¹ under high-forcing scenarios by 2100, while CO₂ sequestration is expected to decline by ~0.3 kg CO₂ ha⁻¹ yr⁻¹, driving a shift toward persistent net CO₂-equivalent source behaviour and a weakening of the long-term cooling effect that wetlands have provided under natural conditions.

Prairie Pothole Region↗
USGS2024

Rock sample photogrammetry

This step-by-step protocol describes the photogrammetry process used by the U.S. Geological Survey Spokane Imaging Lab (SPIMG) lab to create 3D models of geologic samples. Steps related to photographing small objects are applicable to photogrammetry in general, however, SPIMG-specific steps involving lab hardware and software may not be.

Protocols.io↗
USGS2025

Preferential groundwater discharges along stream corridors are disregarded sources of greenhouse gases

Groundwater delivery of greenhouse gases (GHGs) to stream banks and riparian areas, before mixing with surface waters, has not been well quantified. We measured preferential groundwater delivery of GHGs to stream banks within three stream reaches, and found that stream banks with discharging groundwater emitted more CO 2 and were sources of N 2 O compared to stream banks without actively discharging groundwater, which emitted less CO 2 and were N 2 O sinks. At one of our stream reaches, groundwater CO 2 and N 2 O concentrations were 1.4–19.2 and 1.1–40.6 times higher than those in surface water, respectively, and groundwater delivery rates of CO 2 and N 2 O were 1.5 and 1.6 times higher than surface water emissions per unit area. On average, 21% (range 0%–100%) of CO 2 and N 2 O were emitted at the stream bank before mixing with surface waters. Preferential groundwater GHG emissions may contribute substantially to stream corridor emissions and may be underestimated when using a channel-centric approach to estimate riverine GHG budgets.

JGR Biogeosciences↗
USGS2026

Surface variable‐based machine learning for scalable arsenic prediction in undersampled areas

In the United States, private wells are not federally regulated, and many households do not test for Arsenic (As). Chronic exposure is linked with multiple health outcomes, and risk can change sharply over short distances and with well depth. Coarse maps or sparse sampling often miss exceedances. Most existing models operate at ∼1 km resolution and use groundwater chemistry or detailed geologic logs, which limits their use in undersampled areas where improved guidance is most needed. We overcome these limitations by developing a machine learning model for Minnesota, USA, that predicts As exposure risk using only surficial variables from remote sensing and global data sets. Variables related to surface water hydrology and geomorphology are selected based on mechanistic links that control redox conditions and As mobilization. Local training was essential, and surficial geology variables that are more sensitive to local conditions were needed to maximize model accuracy. The resulting complete model was sufficiently sensitive to generate accurate and detailed risk maps and depth profiles of As concentrations above the 10 μg/L maximum contaminant level. Accuracy depended on local training data density. We identified a training data density of 0.07 wells/km 2 as a practical target for stable county-level performance. Maps of exceedance probabilities highlight priority areas for testing that are particularly important in rural communities that have received less sampling. These results support public health action by guiding where to install wells and where to test them, how much new sampling is needed, and where treatment outreach is most urgent.

Minnesota↗
USGS2024

Projected sea-level rise and high tide flooding at De Soto National Memorial, Florida

Introduction National parks and preserves in the South Atlantic-Gulf Region contain valuable coastal habitats such as tidal wetlands and mangrove forests, as well as irreplaceable historic buildings and archeological sites located in low-lying areas. These natural and cultural resources are vulnerable to accelerated sea-level rise and escalating high tide flooding events. Through a Natural Resources Preservation Program-funded project during 2021–23, the U.S. Geological Survey, in collaboration with the National Park Service, estimated the probability of inundation at De Soto National Memorial, Florida, and several other parks under various sea-level rise scenarios and contemporary high tide flooding thresholds. The maps produced for this effort can be used to assess potential habitat change and explore how infrastructure and cultural resources within the park may be exposed to future flooding-related hazards.

Florida↗
USGS2024

Projected sea-level rise and high tide flooding at Dry Tortugas National Park, Florida

Introduction National parks and preserves in the South Atlantic-Gulf Region contain valuable coastal habitats such as tidal wetlands and mangrove forests, as well as irreplaceable historic buildings and archeological sites located in low-lying areas. These natural and cultural resources are vulnerable to accelerated sea-level rise and escalating high tide flooding events. Through a Natural Resources Preservation Program-funded project during 2021–23, the U.S. Geological Survey, in collaboration with the National Park Service, estimated the probability of inundation at Dry Tortugas National Park, Florida, and several other parks under various sea-level rise scenarios and contemporary high tide flooding thresholds. The maps produced for this effort can be used to assess potential habitat change and explore how infrastructure and cultural resources within the park may be exposed to future flooding-related hazards.

Florida↗
USGS2025

Using the D-Claw software package to model lahars in the Middle Fork Nooksack River drainage and beyond, Mount Baker, Washington

Lahars, or volcanic mudflows, are the most hazardous eruption-related phenomena that will affect communities living along rivers that originate on Mount Baker. In the past 15,000 years, the largest lahars from Mount Baker have affected the Middle Fork Nooksack River drainage and beyond. Here we use the physics-based D-Claw software package to model nine lahar scenarios that are initiated as water-saturated landslides between Sherman Crater and the Roman Wall on the Mount Baker edifice and flow down the Middle Fork Nooksack River. The scenarios range in volume from 1 to 260 million cubic meters and have an initial hydraulic permeability from 10 −12 to 10 −10 meters squared. Model output includes data such as flow depth, velocity, runout distance, area inundated, arrival time, and sediment concentration as well as information that allows scientists to calculate other important hydrologic characteristics such as lahar discharge. These data are important to officials who have the responsibility to plan for, or take mitigation measures against, future Mount Baker lahars. To check the validity of the D-Claw results, we compare the scenarios to known geologic information. We also compare D-Claw results with empirical models that have been used in the past to determine potential inundation areas, runout distances, and arrival times. These comparisons highlight similarities and differences between empirical and physics-based models. We also present D-Claw scenario-based animations to help scientists, officials, and lay people alike to visualize how future lahars could affect communities.

Washington↗
USGS2025

Gaps in water quality modeling of hydrologic systems

This review assesses gaps in water quality modeling, emphasizing opportunities to improve next-generation models that are essential for managing water quality and are integral to meeting goals of scientific and management agencies. In particular, this paper identifies gaps in water quality modeling capabilities that, if addressed, could support assessments, projections, and evaluations of management alternatives to support ecosystem health and human beneficial use of water resources. It covers surface water and groundwater quality modeling, dealing with a broad suite of physical, biogeochemical, and anthropogenic drivers. Modeling capabilities for six constituents (or constituent categories) are explored: water temperature, salinity, nutrients, sediment, geogenic constituents, and contaminants of emerging concern. Each constituent was followed through the coupled atmospheric-hydrologic-human system, with prominent modeling gaps described for a diverse array of relevant inputs, processes, and human activities. Commonly identified modeling gaps primarily fall under three types: (1) model gaps, (2) data gaps, and (3) process understanding gaps. In addition to potential solutions for addressing specific individual modeling limitations, some broad approaches (e.g., enhanced data collection and compilation, machine learning, reduced-complexity modeling) are discussed as ways forward for tackling multiple gaps. This gap analysis establishes a framework of diverse approaches that may support improved process representation, scale, and accuracy of models for a wide range of water quality issues.

Water↗
USGS2024

Projected sea-level rise and high tide flooding at Timucuan Ecological and Historic Preserve, Florida

Introduction National parks and preserves in the South Atlantic-Gulf Region contain valuable coastal habitats such as tidal wetlands and mangrove forests, as well as irreplaceable historic buildings and archeological sites located in low-lying areas. These natural and cultural resources are vulnerable to accelerated sea-level rise and escalating high tide flooding events. Through a Natural Resources Preservation Program-funded project during 2021–23, the U.S. Geological Survey, in collaboration with the National Park Service, estimated the probability of inundation at Timucuan Ecological and Historic Preserve, Florida, and several other parks under various sea-level rise scenarios and contemporary high tide flooding thresholds. The maps produced for this effort can be used to assess potential habitat change and explore how infrastructure and cultural resources within the park may be exposed to future flooding-related hazards.

Florida↗
USGS2024

Projected sea-level rise and high tide flooding at Biscayne National Park, Florida

Introduction National parks and preserves in the South Atlantic-Gulf Region contain valuable coastal habitats such as tidal wetlands and mangrove forests, as well as irreplaceable historic buildings and archeological sites located in low-lying areas. These natural and cultural resources are vulnerable to accelerated sea-level rise and escalating high tide flooding events. Through a Natural Resources Preservation Program-funded project during 2021–23, the U.S. Geological Survey, in collaboration with the National Park Service, estimated the probability of inundation at Biscayne National Park, Florida, and several other parks under various sea-level rise scenarios and contemporary high tide flooding thresholds. The maps produced for this effort can be used to assess potential habitat change and explore how infrastructure and cultural resources within the park may be exposed to future flooding-related hazards.

Florida↗
USGS2024

Projected sea-level rise and high tide flooding at San Juan National Historic Site, Puerto Rico

Introduction National parks and preserves in the South Atlantic-Gulf Region contain valuable coastal habitats such as tidal wetlands and mangrove forests, as well as irreplaceable historic buildings and archeological sites located in low-lying areas. These natural and cultural resources are vulnerable to accelerated sea-level rise and escalating high tide flooding events. Through a Natural Resources Preservation Program-funded project during 2021–23, the U.S. Geological Survey, in collaboration with the National Park Service, estimated the probability of inundation at San Juan National Historic Site, Puerto Rico, and several other parks under various sea-level rise scenarios and contemporary high tide flooding thresholds. The maps produced for this effort can be used to assess potential habitat change and explore how infrastructure and cultural resources within the park may be exposed to future flooding-related hazards.

San Juan National Historic Site↗
USGS2024

Projected sea-level rise and high tide flooding at Big Cypress National Preserve, Florida

Introduction National parks and preserves in the South Atlantic-Gulf Region contain valuable coastal habitats such as tidal wetlands and mangrove forests, as well as irreplaceable historic buildings and archeological sites located in low-lying areas. These natural and cultural resources are vulnerable to accelerated sea-level rise and escalating high tide flooding events. Through a Natural Resources Preservation Program-funded project during 2021–23, the U.S. Geological Survey, in collaboration with the National Park Service, estimated the probability of inundation at Big Cypress National Preserve, Florida, and several other parks under various sea-level rise scenarios and contemporary high tide flooding thresholds. The maps produced for this effort can be used to assess potential habitat change and explore how infrastructure and cultural resources within the park may be exposed to future flooding-related hazards.

Florida↗
USGS2024

Thermo-hydrologic processes governing supra-permafrost talik dynamics in discontinuous permafrost near Umiujaq (Québec, Canada)

Widespread supra-permafrost talik formation is currently recognized as a critical mechanism that could accelerate permafrost thaw in the Arctic (e.g., Connon et al. 2018; Farquharson et al. 2022). However, the trajectory of permafrost dynamics following talik formation may prove difficult to predict. Physically-based cryohydrogeologic models provide a powerful tool for understanding processes and factors controlling talik dynamics and, ultimately, how permafrost will respond to climate change. Such models are typically used to represent multiple non-linear processes relevant for groundwater systems in cold regions, such as coupled heat and groundwater movement, including freeze-thaw dynamics and the effects on the surface energy balance and the subsurface thermal and hydraulic properties (Lamontagne-Hallé et al. 2020). Though cryohydrogeologic modeling advances have been made in simulating talik dynamics, few applications have been tested against robust long-term hydrometeorological and subsurface observations.

Quebec↗
USGS2024

Time varying crustal anisotropy at Whakaari/White Island volcano

Whakaari/White Island has been the most active New Zealand volcano in the 21st century, producing small phreatic and phreatomagmatic eruptions, which are hard to predict. The most recent eruption occurred in 2019, tragically claiming the lives of 22 individuals and causing numerous injuries. We employed shear-wave splitting analyses to investigate variations in anisotropy during quiescence, unrest, and an eruption between 2018 and 2020. We examined spatial and temporal variations in 7972 shear-wave splitting measurements and derived 1402 V p /IV s ratio measurements. Comparing shear-wave splitting parameters from similar earthquake paths across different times indicates that the observed temporal changes are unlikely to result from variations in earthquake paths through media with spatial variability. Instead, these changes may stem from variations in anisotropy over time, likely caused by changes in crack alignment due to stress or varying fluid content.

Whakaari/White Island volcano↗