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USGS2016

Deriving habitat models for northern long-eared bats from historical detection data: A case study using the Fernow Experimental Forest

The listing of the northern long-eared bat ( Myotis septentrionalis ) as federally threatened under the Endangered Species Act following severe population declines from white-nose syndrome presents considerable challenges to natural resource managers. Because the northern long-eared bat is a forest habitat generalist, development of effective conservation measures will depend on appropriate understanding of its habitat relationships at individual locations. However, severely reduced population sizes make gathering data for such models difficult. As a result, historical data may be essential in development of habitat models. To date, there has been little evaluation of how effective historical bat presence data, such as data derived from mist-net captures, acoustic detection, and day-roost locations, may be in developing habitat models, nor is it clear how models created using different data sources may differ. We explored this issue by creating presence probability models for the northern long-eared bat on the Fernow Experimental Forest in the central Appalachian Mountains of West Virginia using a historical, presence-only data set. Each presence data type produced outputs that were dissimilar but that still corresponded with known traits of the northern long-eared bat or are easily explained in the context of the particular data collection protocol. However, our results also highlight potential limitations of individual data types. For example, models from mist-net capture data only showed high probability of presence along the dendritic network of riparian areas, an obvious artifact of sampling methodology. Development of ecological niche and presence models for northern long-eared bat populations could be highly valuable for resource managers going forward with this species. We caution, however, that efforts to create such models should consider the substantial limitations of models derived from historical data, and address model assumptions.

West Virginia↗

USGS2022

Comparison of two detection methods of a declining rodent, the Allegheny woodrat, in Virginia

Allegheny woodrats Neotoma magister are an imperiled small mammal species most associated with emergent rock habitats in the central Appalachian Mountains and the Ohio River Valley. The monitoring of populations and their spatiotemporal distributions typically has relied on labor-intensive livetrapping. The use of remote-detecting cameras holds promise for being an equally or more effective method to determine species presence, although trap-based captures permit the estimation of other parameters (e.g., survival, population size, site fidelity). In 2017, 2018, and 2020 we compared standard livetrapping with paired cameras for determining site occupancy of Allegheny woodrats in the central Appalachian Mountains of western Virginia. We further examined the influence of baited vs. unbaited cameras at several sites of confirmed occupancy in 2019. We observed that the detection probability using cameras was approximately 1.7 times that of live traps. Also, detection probability at baited camera traps was 1.3–2.0 times that of unbaited camera traps. Estimates of occupancy ranged from 0.44 to 0.49. Our findings suggest that the use of baited remote-detecting cameras provides a more effective method than livetrapping for detecting Allegheny woodrats. Our study provides a framework for the development of a large-scale, long-term monitoring protocol of Allegheny woodrats with the goals of identifying changes in the distribution of the species and quantifying local extinction and colonization rates at emergent rock outcrops and caves throughout the species' known distribution.

Virginia↗

USGS2023

Size structure, age, growth, and mortality of flathead catfish in the Robert C. Byrd Pool of the Ohio and Kanawha Rivers

Flathead catfish ( Pylodictis olivaris ) were sampled in the Robert C. Byrd Pool of the Ohio and Kanawha rivers, West Virginia, to inform management decisions based on population characteristics of size structure, age, growth, and mortality. Sampling was conducted with low-frequency boat electrofishing during late May to early June over a four-year period (2017–2020). We examined size structure using proportional size distribution indi- ces. Growth was evaluated using otolith-derived ages, a von Bertalanffy growth curve, and mean length at age data, including comparisons to published mean length at age data of other populations. Annual mortality was estimated with a weighted catch curve. We documented a high-density population (mean CPUE = 49 fish h–1) with low mortality (A = 11.8%), characterized by slow growing individuals with a maximum recorded age of 36. Our results further demonstrate that this population is characterized by a broad size structure that likely is maintained only through low harvest and high rates of catch and release by anglers.

West Virginia↗

USGS2019

Activity patterns of bats during the fall and spring along ridgelines in the central Appalachians

Many central Appalachian ridges offer high wind potential, making them attractive to future wind-energy development. Understanding seasonal and hourly activity patterns of migratory bat species may help to reduce fatalities at wind-energy facilities and provide guidance for the development of best management practices for bats. To examine hourly migratory bat activity patterns in the fall and spring in Virginia in an exploratory fashion with a suite of general temporal, environmental, and weather variables, we acoustically monitored bat activity on five ridgelines and side slopes from early September through mid-November 2015 and 2016 and from early March through late April 2016 and 2017. On ridges, bat activity decreased through the autumn sample period, but was more variable through the spring sample period. In autumn, migratory bat activity had largely ceased by mid-November. Activity patterns were species specific in both autumn and spring sample periods. Generally, migratory bat activity was negatively associated with hourly wind speeds but positively associated with ambient temperatures. These data provide further evidence that operational mitigation strategies at wind-energy facilities could help protect migratory bat species in the Appalachians; substantially slowing or locking wind turbine blade spin during periods of low wind speeds, often below where electricity is generated, and warm ambient temperatures may minimize mortality during periods of high bat activity.

Virginia, West Virginia↗

USGS2014

Strategic conservation planning for the Eastern North Carolina/Southeastern Virginia Strategic Habitat Conservation Team

The Eastern North Carolina/Southeastern Virginia Strategic Habitat Conservation Team (ENCSEVA) is a partnership among local federal agencies and programs with a mission to apply Strategic Habitat Conservation to accomplish priority landscape-level conservation within its geographic region. ENCSEVA seeks to further landscape-scale conservation through collaboration with local partners. To accomplish this mission, ENCSEVA is developing a comprehensive Strategic Habitat Conservation Plan (Plan) to provide guidance for its members, partners, and collaborators by establishing mutual conservation goals, objectives, strategies, and metrics to gauge the success of conservation efforts. Identifying common goals allows the ENCSEVA team to develop strategies that leverage joint resources and are more likely to achieve desired impacts across the landscape. The Plan will also provide an approach for ENCSEVA to meet applied research needs (identify knowledge gaps), foster adaptive management principles, identify conservation priorities, prioritize threats (including potential impacts of climate change), and identify the required capacity to implement strategies to create more resilient landscapes. ENCSEVA seeks to support the overarching goals of the South Atlantic Landscape Conservation Cooperative (SALCC) and to provide scientific and technical support for conservation at landscape scales as well as inform the management of natural resources in response to shifts in climate, habitat fragmentation and loss, and other landscape-level challenges (South Atlantic LCC 2012). The ENCSEVA ecoregion encompasses the northern third of the SALCC geography and offers a unique opportunity to apply landscape conservation at multiple scales through the guidance of local conservation and natural resource management efforts and by reporting metrics that reflect the effectiveness of those efforts (Figure 1). The Environmental Decision Analysis Team, housed within the North Carolina Cooperative Fish and Wildlife Research Unit at North Carolina State University, is assisting the ENCSEVA team in developing a scientifically sound basis for the Plan though the elicitation of expert knowledge and the organization of that knowledge using the Open Standards for the Practice of Conservation. The Open Standards for the Practice of Conservation is a framework that is well suited to incorporating decision-making tools such as Structured Decision Making and provides a multi-step process to conceptually organize conservation projects in a manner that enhances the rigor and transparency of expert and knowledge-based plans. It helps define explicit pathways from 2 planned conservation activities and ultimate impact, as well as indicators to measure success (Stem et al. 2005). Specifically, the framework identifies conservation targets, key ecological attributes, threats, and associated indicators to monitor responses given the implementation of a conservation action (Conservation Measures Partnership 2007). This report serves to provide a scientific foundation for the Plan by summarizing the expert opinion of wildlife biologists, ecologists, hydrologists, researchers, natural resource managers, and conservation practitioners regarding five environments (wetlands, riverine systems, estuaries, uplands, and barrier islands) within the ENCSEVA geography. Specifically, this report describes (1) the approach to elicit expert knowledge meant to support the strategic plan, (2) how this knowledge can inform collaborative conservation planning, and (3) a summary of opportunities available for the ENCSEVA team to address threats and impacts associated with climate change within the ecoregion.

Technical Bulletin↗

USGS2013

Water quality, sediment characteristics, aquatic habitat, geomorphology, and mussel population status of the Clinch River, Virginia and Tennessee, 2009-2011

Chemical, physical, and biological data were collected during 2009-2011 as part of a study of the Clinch River in Virginia and Tennessee. The data from this study, data-collection methods, and laboratory analytical methods used in the study are documented in this report. The study was conducted to describe the conditions of the Clinch River and to determine if there are measurable differences in chemical, physical, or biological characteristics in a segment of the river where freshwater mussel populations are in decline, have low density, richness, little to no recruitment, and lack endangered species (low-quality reach) compared to a segment of the river where mussel assemblages have relatively high density, richness, evidence of recruitment, and support endangered species (high-quality reach). Five continuous water-quality monitors were installed and operated on the mainstem of the Clinch River and two tributaries. Discrete water-quality sample sets were collected during base-flow and stormflow conditions two sites on the Clinch River and on the Guest River, a tributary to the Clinch River predominantly in the Appalachian Plateaus Physiographic Province. Base-flow water-quality samples were collected in July and August 2011 at 15 sites along the mainstem of the Clinch River. Other analyses included longitudinal sampling along the mainstem of the Clinch River at 10 sites to evaluate bed-sediment chemistry, habitat condition, and mollusk community status. In situ freshwater mussel growth and mortality experiments were conducted with hatchery propogated Villosa iris (rainbow mussels). Tissue from the V. iris as well as tissue from 16 Actinonaias pectorosa mussels were analyzed for trace metals, and V. iris mussel tissue was analyzed for organic compounds. Data collected during this investigation were analyzed by various U.S. Geological Survey or U.S. Fish and Wildlife Service laboratories.

Tennessee, Virginia↗

USGS2013

Identification of metrics to monitor salt marsh integrity on National Wildlife Refuges in relation to conservation and management objectives

Executive Summary Most salt marshes in the US have been degraded by human activities, and threats from physical alterations, surrounding land-use, species invasions, and global climate change persist. Salt marshes are unique and highly productive ecosystems with high intrinsic value to wildlife, and many National Wildlife Refuges (NWRs) have been established in coastal areas to protect large tracts of salt marsh and wetland-dependent species. Various management practices are employed routinely on coastal NWRs to restore and enhance marsh integrity and ensure ecosystem sustainability. Prioritizing NWR salt marshes for application of management actions and choosing among multiple management options requires scientifically-based methods for assessing marsh condition. Monitoring is integral to structured decision-making (SDM), a formal process for decomposing a decision into its essential elements. Within a natural resource context, SDM involves identifying management objectives, alternative management actions, and expected management outcomes. The core of SDM is a set of criteria for measuring system performance and evaluating management responses. Therefore, use of SDM to frame natural resource decisions leads to logical selection of monitoring attributes that are linked explicitly to management needs. We used SDM to guide selection of variables for monitoring the ecological integrity of salt marshes within the National Wildlife Refuge System (NWRS). Our objectives were to identify indicators of salt marsh integrity that are effective across large geographic regions, responsive to a wide range of threats, and feasible to implement within funding and staffing constraints of the NWRS. In April, 2008, we engaged interdisciplinary experts in a week-long rapid prototyping SDM workshop to define the essential elements of salt marsh management decisions on refuges throughout the northeastern, southwestern, and northwestern US, corresponding to respective Regions 5, 2, and 1 of the US Fish and Wildlife Service (FWS). Through this process we identified measurable attributes for monitoring salt marsh ecosystems that are integrated into conservation practice and target management objectives. The following salt marsh attributes were identified through the SDM process either for describing state condition to determine management needs or for evaluating the achievement of management objectives: historical condition and geomorphic setting; ditch density; surrounding land use; ratio of open water area to vegetation area; rate of pesticide application; environmental contaminant concentration; change in marsh surface elevation relative to sea level rise; tidal range and groundwater level; surface topography; salinity; and species composition and abundance of vegetation, invasive species, invertebrates, nekton, and breeding and wintering birds. The identified attributes were too broadly defined to serve as operational monitoring variables. Therefore, we tested specific metrics for quantifying most of these attributes in summers of 2008 and 2009. The first four attributes in the above list can be characterized by office-based analysis of existing GIS data layers. The remaining attributes require field-based methods for assessment. We were forced to exclude a small number of attributes from field tests due to inconsistent data (pesticide application rate, environmental contaminant concentrations) or requirements that exceeded the scope of this project (change in marsh surface elevation; surface topography; benthic invertebrates; wintering birds). We evaluated potential metrics for evaluating all remaining field attributes. In partnership with NWRS biologists, we tested rapid versus intensive metrics for monitoring field attributes (tidal range and groundwater level; marsh surface elevation; salinity; and species composition and abundance of vegetation, invasive species, nekton, and breeding birds) at coastal refuges throughout FWS Region 5. Seven refuges participated in metric testing in 2008: Rachel Carson (ME), Parker River (MA), Wertheim (NY), E. B. Forsythe (NJ), Bombay Hook (DE), Prime Hook (DE), and Eastern Shore of Virginia Complex (VA). These seven and two additional refuges participated in metric testing in 2009: Rhode Island Complex (RI) and Stewart B. McKinney (CT). We based all field metrics on existing protocols for salt marsh assessment. Sampling locations were determined randomly within delineated marsh study units (MSUs) at each refuge. Detailed field methods are provided in appendices to this report. Measurements for individual metrics were averaged across samples within MSUs during each year of sampling. Each year, correlation or regression analysis was conducted on average measurements across MSUs within each attribute set to identify redundant metrics. Statistical redundancy between a pair of metrics within an attribute set (i.e., correlation or regression slopes with p-values < 0.05) was considered justification for eliminating one of the pair from the regional set of monitoring metrics. Decisions regarding metric elimination versus retention were based on feasibility of monitoring, considering such factors as sampling time, resources required, and potential for regional standardization in implementation. The result of these tests is a reduced suite of monitoring metrics that targets NWRS management decisions and is practicable for implementing on a regional scale. Based on these tests, we recommend the following list of metrics for monitoring integrity of NWRS salt marshes (marsh attribute category is in parentheses): (historical condition and geomorphic setting) position of marsh in the landscape, marsh shape, degree of fill and/or fragmentation, degree of tidal flushing, amount of aquatic edge; (ditch density) ranking of ditch density from none to severe; (surrounding land use) relative proportion of agricultural land in a 150-m buffer around the marsh, relative proportion of natural land in a 150-m buffer around the marsh, relative proportion of natural land in a 1-km buffer around the marsh; (ratio of open water area to vegetation area) ratio of open water to emergent herbaceous wetlands within the marsh; (marsh surface elevation) elevation referenced to NAVD88 in a representative area of the marsh; (tidal range and groundwater level) percent of time the marsh surface is flooded during deployment of a continuous water-level monitor at a representative marsh location, mean depth of surface flooding as measured by a continuous water-level monitor at a representative location; (salinity) salinity measured in surface water; (vegetation community) vegetation species richness using the point-intercept method in 100-m diameter survey plots, percent cover of various marsh community types within 100-m diameter survey plots; (invasive species abundance) percent cover of invasive plant species measured using the point-intercept method in 100-m diameter survey plots; (nekton community) nekton density, nekton species richness, length of Fundulus heteroclitus ; (breeding bird community) abundance of Willets counted per point during standard call-broadcast surveys, summed abundance of tidal marsh obligate species (Clapper Rail, Willet, Saltmarsh Sparrow, Seaside Sparrow) counted per point during standard call-broadcast surveys. Metrics describing the historical condition, geomorphic setting, and broad landscape features can be assessed using existing GIS databases. Our results support use of rapid methods to assess the majority of field metrics; only those used to describe the nekton community must be measured using intensive methods (throw traps or ditch nets, dependant on habitat configuration). Implementation of these metrics for quantitative assessment of NWRS salt marsh integrity in FWS Region 5 requires developing sampling designs for each refuge. Additionally, it is important to determine how the monitoring information will be used within a management context. SDM should be used to complete the analysis of salt marsh management decisions. The next steps would involve 1) prioritizing and weighting the management objectives; 2) predicting responses to individual management actions in terms of objectives and metrics; 3) using multiattribute utility theory to convert all measurable attributes to a common utility scale; 4) determining the total management benefit of each action by summing utilities across objectives; and 5) maximizing the total management benefits within cost constraints for each refuge. This process would allow the optimum management decisions for NWRS salt marshes to be selected and implemented based directly on monitoring data and current understanding of marsh responses to management actions. Monitoring the outcome of management actions would then allow new monitoring data to be incorporated into subsequent decisions.

Connecticut, Delaware, Maine, Massachusetts, New J↗

USGS2020

Wetland water-management may influence mercury bioaccumulation in songbirds and ducks at a mercury hotspot

Mercury is a persistent, biomagnifying contaminant that can cause negative behavioral, immunological, and reproductive effects in wildlife and human populations. We examined the role of wetland water-management on mercury bioaccumulation in songbirds and ducks at Kellys Slough National Wildlife Refuge Complex, near Grand Forks, North Dakota USA. We assessed mercury concentrations in blood of wetland-foraging songbirds (80 common yellowthroats [ Geothlypis trichas ] and 14 Nelson’s sparrows [ Ammospiza nelsoni ]) and eggs of upland-nesting ducks (28 gadwall [ Mareca strepera ], 19 blue-winged teal [ Spatula discors ], and 13 northern shoveler [ S. clypeta ]) across four wetland water-management classifications. Nelson’s sparrow blood mercury concentrations were elevated (mean: 1.00 µg/g ww; 95% CL: 0.76–1.31) and similar to those reported 6 years previously. Mercury in songbird blood and duck eggs varied among wetland water-management classifications. Songbirds and ducks had 67% and 49% lower mercury concentrations, respectively, when occupying wetlands that were drawn down with water flow compared to individuals occupying isolated-depressional wetlands with no outflow. Additionally, songbirds within impounded and partially drawn-down wetland units with water flow had mercury concentrations that were 26–28% lower, respectively, than individuals within isolated-depressional wetlands with no outflow. Our results confirm that mercury concentrations in songbirds at Kellys Slough continue to be elevated and suggest that water-management could be an important tool for wetland managers to reduce bioaccumulation of mercury in birds.

North Dakota↗

USGS2008

Microhabitat use by brook trout inhabiting small tributaries and a large river main stem: Implications for stream habitat restoration in the central Appalachians

Brook trout (Salvelinus fontinalis) habitat restoration is needed across a range of stream sizes; however, studies quantifying brook trout habitat preferences in streams of differing sizes are rare. We used radio-telemetry to quantify adult brook trout microhabitat use in a central Appalachian watershed, the upper Shavers Fork of the Cheat River in eastern West Virginia. Our objectives were to: 1) quantify non-random microhabitat use by adult brook trout in the Shavers Fork main stem (drainage area = 32 km2) and an adjacent tributary, Rocky Run (drainage area = 7 km2); and 2) construct stream-specific habitat suitability curves (HSCs) for four important microhabitat variables (depth, average current velocity, maximum current velocity within one meter, and distance to cover). Brook trout used a subset of available microhabitats in both the main stem and Rocky Run: trout tended to occupy microhabitats that were deeper, higher velocity, and closer to cover than expected by chance alone. Although specific microhabitat values differed between the main stem and tributary populations, the overall patterns in brook trout microhabitat use were consistent regardless of stream size. Habitat suitability curves were constructed based on brook trout microhabitat use and will be used to design and monitor the effectiveness of future habitat restoration efforts in the Shavers Fork watershed. Our results suggest that habitat enhancement projects that increase the availability of deep, high velocity microhabitats adjacent to cover would benefit brook trout in both small tributaries and larger river main stems.

Proceedings of the Southeastern Association of Fis↗

USGS2011

Secretive marsh aird species co-eccurrences and habitat associations across the midwest, USA

Because secretive marsh birds are difficult to detect, population status and habitat use for these birds are not well known. We conducted repeated surveys for secretive marsh birds across 264 sites in the Upper Mississippi River and Great Lakes Joint Venture region to estimate abundance, occupancy, and detection probabilities during the 2008 and 2009 breeding seasons. We identified species groups based on observed species co-occurrences. Two species, least bittern Ixobrychus exilis and American bittern Botaurus lentiginosus , co-occurred with other species less often than expected by chance, and two species groups, rails (Virginia rail Rallus limicola and sora Porzana carolina ) and open-water birds (pied-billed grebe Podilymbus podiceps , common moorhen Gallinula chloropus , and American coot Fulica americana ; coots were only surveyed in 2009), co-occurred more often than expected by chance. These groupings were consistent between years. We then estimated the relation of these species and groups to landscape and local site characteristics by using zero-inflated abundance models that accounted for incomplete detection. At the landscape level (5-km radius), the amount of emergent herbaceous wetland was positively associated with least bittern occupancy, whereas the amount of woody wetland was negatively associated with least bittern, rail, and open-water bird occupancy. At the local level, habitat variables that were associated with abundance were not consistent among groups or between years, with the exception that both least bitterns and open-water birds had a strong positive association between abundance and water-vegetation interspersion. Land managers interested in marsh bird management or conservation may want to consider focusing efforts on landscapes with high amounts of emergent herbaceous wetland and low amounts of woody wetland, and managing for high amounts of water-vegetation interspersion within the wetland.

Journal of Fish and Wildlife Management↗

USGS2019

Growth and mortality of invasive Flathead Catfish in the tidal James River, Virginia

Invasive species are a major threat to biodiversity of native fishes in North America. In Atlantic coastal rivers of the United States, large catfishes introduced from the Gulf of Mexico drainages have become established and contributed to native species declines. Flathead Catfish Pylodictis olivaris were introduced to the Chesapeake Bay drainage in the 1960s and 1970s in the James and Potomac river systems in the eastern United States. Diet studies have found James River Flathead Catfish function as apex predators and are known to consume at-risk Alosa spp. To limit further range expansion and impacts to native species, resource management agencies need information on population characteristics to support population assessments and management plan development. Thus, we examined temporal trends in growth rates and estimated total instantaneous mortality for tidal James River Flathead Catfish collected by Virginia Department of Game and Inland Fisheries from 1997 to 2015. Parameters of the von Bertalanffy growth model with length-at-age observations pooled across sampling years were estimated as L ∞ = 1,059 mm, k = 0.231/y, and t 0 = 0.55 y. Flathead Catfish growth differed among sampling years, especially for the years 2007 and 2014, which had the largest sample sizes. However, there were no obvious temporal trends in growth trajectories. James River Flathead Catfish tend to grow much faster than most populations used in development of the relative growth index, but the species is known to grow faster in its nonnative range. Consequently, scientists and managers should use caution when applying growth indices if native and nonnative populations are not expressly considered in development of the index. We estimated total instantaneous mortality as Z = 0.50 and mean natural mortality from six estimators as M = 0.30. A lack of older individuals in the population means that mortality rates may be overestimated as a result of gear selectivity or ongoing maturation of the population. These data provide information to support future work examining the species in the James River and development of population models to evaluate management strategies and management plans.

Virginia↗

USGS2015

Grasshopper sparrow reproductive success and habitat use on reclaimed surface mines varies by age of reclamation

We studied 3 mountaintop mining–valley fill (MTMVF) complexes in southern West Virginia, USA to examine grasshopper sparrow ( Ammodramus savannarum pratensis ) demographic response to different age classes of mine land reclamation. For 71 nests monitored during the 2001–2002 breeding seasons, overall nest success (36%) was within the range of nest success rates previously reported for this species, but it was highest on more recently reclaimed sites (56%). Nest density and clutch size did not differ ( P  > 0.30) among reclamation age classes, whereas number of fledglings was greater ( P  = 0.01) on more recently reclaimed sites. We measured vegetation variables at 70 nest subplots and at 96 systematic subplots to compare nest vegetation with vegetation available on the plots. We found that nests occurred in areas with more bare ground near the nest, greater vegetation height–density surrounding the nest site, lower grass height, and fewer woody stems, similar to previous studies. As postreclamation age increased, vegetation height–density and maximum grass height increased, and sericea ( Lespedeza cuneata ) became more dominant. Nest success declined with increasing vegetation height–density at the nest. The grasslands available on these reclaimed mine complexes are of sufficient quality to support breeding populations of grasshopper sparrows, but nest success decreased on the older reclaimed areas. Without active management, grasslands on reclaimed MTMVF mines become less suitable for nesting grasshopper sparrows about 10 years after reclamation.

West Virginia↗

USGS2024

Demographic risk factors vary in the invasion front of chronic wasting disease in West Virginia, USA

After detecting chronic wasting disease (CWD) in white-tailed deer ( Odocoileus virginianus ) in Hampshire County, West Virginia, USA, in 2005, we investigated the change of CWD apparent prevalence and potential factors influencing infection risk during the invasion front. Over eight sampling years (2006–2012 and 2017) during a 12-yr period within a 101-km 2 -area monitoring zone, we sampled and tested a total of 853 deer for CWD by ELISA and immunohistochemistry. Bayesian logistic regression of risk factors included collection year, age class, sex, and adjusted body weight (weight after accounting for sex, age, kidney fat index, and number of fetuses). In the whole-herd model ( n =634), collection year, age, and adjusted body weight were associated with increased odds of CWD, whereas an age-weight interaction had a negative relationship. We found that males drove the positive associations with age and adjusted body weight, whereas females were responsible for the negative interaction effect. These findings suggest potential behavioral and physiological mechanisms related to sex that may influence CWD exposure. Older males exhibited higher CWD prevalence, aligning with previous studies. Notably, the novel finding of adjusted body weight as a risk factor in males warrants further investigation, and this study highlights the need for future research on social behavior and its role in CWD transmission within white-tailed deer populations.

Journal of Wildlife Diseases↗

USGS2022

Northern long-eared bats in the central Appalachians following white-nose syndrome: Failed maternity colonies?

Northern long-eared bat ( Myotis septentrionalis ) populations have experienced severe declines in eastern North America from white-nose syndrome (WNS), yet potential secondary effects on maternity roosting and recruitment remain largely unknown. We documented female day- roosting at two locations in the central Appalachians of Virginia, Back Creek Mountain (BCM) and Rapidan Camp (RC), during 2015 and 2016, ap- proximately six years after the regional onset of WNS. We compared roost characteristics with available trees and roosts recorded prior to WNS at the Fernow Experimental Forest (FEF), West Virginia, in 2007 and 2008. Roosts at BCM were smaller than pre-WNS roosts but were otherwise similar in terms of stand condition and species use, though bats selected for red maple ( Acer rubrum ) at BCM rather than black locust ( Robinia pseudoacacia ) as at FEF. At RC, bats roosted almost exclusively in large eastern hemlock ( Tsuga canadensis ) snags (dbh x ¯ = 50.13 cm, SD = 23.1) with high solar exposure that had been killed by the hemlock woolly adelgid ( Adelges tsugae ). The two observed strategies, selection of smaller, midstory trees at BCM and of dominant, exposed roosts at RC, correspond with pre-WNS observations of female northern long-eared bat roost use at similar sites. However, our re- sults suggest reliance on smaller roosts and canopy-dominant positions that better accommodate solitary individuals and small groups associated with smaller post-WNS colonies in terms of space and thermoregulatory benefits. Despite some observations of pregnant and lactating individuals, all three post-WNS colonies vacated roost networks in early June, and we observed no juveniles. Potential colony failure at BCM and RC is consistent with pre- dicted secondary physiological effects from WNS-induced population collapses, suggesting, if recruitment failed, northern long-eared bats may already be functionally extirpated in portions of the central Appalachians.

Virginia, West Virginia↗

USGS2019

Identification of a novel Adélie penguin circovirus at Cape Crozier (Ross Island, Antarctica)

Understanding the causes of disease in Antarctic wildlife is crucial as many of these species are already threatened by environmental changes brought about by climate change. In recent years, Antarctic penguins have been showing signs of an unknown pathology: a feather disorder characterised by missing feathers resulting in exposed skin. During the 2018-19 austral summer breeding season at Cape Crozier colony on Ross Island, Antarctica, for the first time we observed an Adlie penguin chick missing down over most of its body. A guano sample was collected from the nest of the featherless chick and, using high throughput sequencing we identified a novel circovirus. Using abutting primers, we amplified the full genome, which we cloned, and Sanger sequenced to determine the complete genome of the circovirus. The Adlie penguin guano-associated circovirus genome shares <67% genome-wide nucleotide identity to other circoviruses, representing a new species of circovirus, therefore we named it penguin circovirus (PenCV). Using the same primer pair, we screened 25 previously collected cloacal swabs taken at Cape Crozier from known-age adult Adlie penguins during the 2014-15 season displaying no clinical signs of feather-loss disorder. Three of the 25 samples (12%) were positive for a PenCV, whose genome shared >99% pairwise identity to the one identified in 2018-19. This is the first report of a circovirus associated with a penguin species and could be a possible etiological agent of the feather-loss disorder in Antarctic penguins.

Viruses↗

USGS2018

Evaluating autonomous acoustic surveying techniques for rails in tidal marshes

There is a growing interest toward the use of autonomous recording units (ARUs) for acoustic surveying of secretive marsh bird populations. However, there is little information on how ARUs compare to human surveyors or how best to use ARU data that can be collected continuously throughout the day. We used ARUs to conduct 2 acoustic surveys for king ( Rallus elegans ) and clapper rails ( R. crepitans ) within a tidal marsh complex along the Pamunkey River, Virginia, USA, during May–July 2015. To determine the effectiveness of an ARU in replacing human personnel, we compared results of callback point‐count surveys with concurrent acoustic recordings and calculated estimates of detection probability for both rail species combined. The success of ARUs at detecting rails that human observers recorded decreased with distance ( P ≤ 0.001), such that at <25 m, 90.3% of human‐recorded rails also were detected by the ARU, but at >75 m, only 34.0% of human‐detected rails were detected by the ARU. To determine a subsampling scheme for continuous ARU data that allows for effective surveying of presence and call rates of rails, we used ARUs to conduct 15 continuous 48‐hr passive surveys, generating 720 hr of recordings. We established 5 subsampling periods of 5, 10, 15, 30, and 45 min to evaluate ARU‐based presence and vocalization detections of rails compared with each of the full 60‐min sampling of ARU‐based detection of rails. All subsampling periods resulted in different ( P ≤ 0.001) detection rates and unstandardized vocalization rates compared with the hourly sampling period. However, standardized vocalization counts from the 30‐min subsampling period were not different from vocalization counts of the full hourly sampling period. When surveying rail species in estuarine environments, species‐, habitat‐, and ARU‐specific limitations to ARU sampling should be considered when making inferences about abundances and distributions from ARU data.

Wildlife Society Bulletin↗

USGS2026

Experimental lure design reveals the best attractants for increasing detection of multiple mesocarnivores

Many mesocarnivores have low detection rates that hinder practitioners' abilities to implement effective monitoring strategies. Using olfactory attractants (i.e. lures) may increase detection rates, but variation in effects among species is not well understood. Thus, investigating factors influencing detection of mesocarnivores, can inform and improve monitoring efforts. We evaluated the effects of lures and environmental covariates on the detection of plains spotted skunks Spilogale interrupta , striped skunks Mephitis mephitis , northern raccoons Procyon lotor , gray foxes Urocyon cinereoargenteus , coyotes Canis latrans , bobcats Lynx rufus and Virginia opossums Didelphis virginiana . We conducted surveys during January–May 2023 in southeast Oklahoma using motion-triggered cameras at randomly selected sites. We surveyed sites using a 4-camera cluster and leave-one-out lure design, where 3 cameras were randomly assigned 1 of 4 lures (i.e. skunk-based lure, fatty acid tablets, sweet lure or sardines) and 1 camera was a control (i.e. no lure). We analyzed species-specific detection data within an occupancy framework to determine the influence of lure combinations and environmental covariates (i.e. temperature, precipitation and moon illumination) on site-level detection patterns for each species. When lures influenced detection, we assessed species-specific preference among lures (and the control) within sites by comparing camera-level independent detections with Kruskal–Wallis and Dunn's tests at sites where the species was detected. The effect of lures varied among species; lure combinations influenced site-specific daily detection of plains spotted skunks, striped skunks, gray foxes, raccoons and bobcats, but did not affect detection of coyotes or opossums. One environmental covariate influenced detection of striped skunks (i.e. moon illumination), bobcats (i.e. temperature), and gray foxes (i.e. precipitation). Within sites, lure preference varied among species. Spotted skunks, gray foxes and raccoons preferred sardines whereas striped skunks preferred the skunk-based lure. Identifying lure preferences and effects of environmental factors can help optimize sampling and improve mesocarnivore monitoring efforts.

Oklahoma↗

USGS2023

Survival, cause-specific mortality, and population growth of white-tailed deer in western Virginia

Understanding the role of recruitment in population dynamics of white-tailed deer ( Odocoileus virginianus ) is important for management. In the central Appalachian Mountains, deer are part of a largely forested ecosystem that supports 3 carnivore species thought to be capable of influencing white-tailed deer recruitment: black bears ( Urus americanus ), coyotes ( Canis latrans ), and bobcats ( Lynx rufus ). Yet little is known about predation, how other environmental factors influence recruitment, or the importance of neonate survival to white-tailed deer population performance in the region. Our objectives were to identify causes of mortality for neonates, analyze effects of landscape attributes on survival of neonates, estimate survival rates for neonates and adult female white-tailed deer, and to model population growth trends based on current vital rates and hypothetical harvest and neonate survival scenarios. During 2019–2020, we captured 57 neonate deer in Bath County, Virginia, USA, by monitoring 38 pregnant females equipped with global positioning system collars and vaginal implant transmitters and by conducting transect searches for recently born neonates. We observed 37 neonate mortalities and identified cause of death using field and genetic evidence. Mortalities included 28 predation events and 9 deaths from other causes (e.g., abandonment, malnutrition, disease). Black bears accounted for 48.6% of neonate mortalities, and 64.2% of predation events ( n = 18), followed by bobcats ( n = 5) and coyotes ( n = 3). Annual survival for adult female deer was 0.871 and neonate survival to 12 weeks old was 0.310. Elevation was a significant predictor of neonate survival; mortality risk increased 20% for every 100-m increase in elevation. Models of annual population growth using observed vital rates predicted an increasing population (λ = 1.10). A 10% increase in female harvest would still result in a potential population increase of 2% (λ = 1.02), but a 20% increase in harvest rate would result in a potential 7% decline (λ = 0.93). Neonate survival was higher near fertile valley bottoms and lower along forested ridges characterized by shallow, infertile soils and limited edge or early successional forests. While predation, largely influenced by black bears, was the leading cause of neonate mortality and contributed to low neonate survival, we observed little evidence of population decline, and suggest there is opportunity for a modest increase in harvest of female deer.

Virginia↗