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At least 163 records · Page 9Linked to original sources

Museum metabarcoding: a novel method revealing gut helminth communities of small mammals across space and time

Natural history collections spanning multiple decades provide fundamental historical baselines to measure and understand changing biodiversity. New technologies such as next generation DNA sequencing (NGS) have considerably increased the potential of museum specimens to address significant questions regarding the impact of environmental changes on host and parasite/pathogen dynamics. We developed a new technique to identify intestinal helminth parasites and applied it to shrews (Eulipotyphla: Soricidae) because they are ubiquitous, occupy diverse habitats, and host a diverse and abundant parasite fauna. Notably, we included museum specimens preserved in various ways to explore the efficacy of using metabarcoding analyses that may enable identification of helminth symbiont communities from historical archives. We successfully sequenced the parasite communities (using 12S mtDNA, 16S mtDNA, 28S rDNA) of 23 whole gastrointestinal (GI) tracts. All GI tracts were obtained from the Museum of Southwestern Biology (MSB), USA, and from recent field collections, varying both in time since fixation (ranging from 4 months to 16 years) and preservation method (70% or 95% ethanol stored at room temperature, or flash frozen in liquid nitrogen and stored at -80°C). Our proof of concept demonstrates the feasibility of applying NGS techniques to authoritatively identify the parasite/pathogen communities within whole GI tracts from museum specimens of varying age and fixation, and the value of future preservation of host-associated whole GI tracts in public research archives. This powerful approach facilitates future comparative examinations of the distributions and interactions among multiple associated groups of organisms through time and space.

International Journal for Parasitology

Construction of shipping channels in the Detroit River: History and environmental consequences

The Detroit River is one of the most biologically diverse areas in the Great Lakes basin. It has been an important international shipping route since the 1820s and is one of the busiest navigation centers in the United States. Historically, it supported one of the most profitable Lake Whitefish (Coregonus clupeaformis) commercial fisheries in the Great Lakes. Since 1874, the lower Detroit River has been systematically and extensively modified, by construction of deepwater channels, to facilitate commercial shipping. Large-scale dredging, disposal of dredge spoils, and construction of water-level compensating works has greatly altered channel morphology and flow dynamics of the river, disrupting ecological function and fishery productivity of the river and influencing Great Lakes water levels. From 1874 to 1968, major construction projects created 96.5 kilometers (60 miles) of shipping channels, removed over 46,200,000 m 3 of material, covered 4,050 hectares (40.5 square kilometers) of river bottom with dredge spoils, and built 85 hectares of above-waterline compensating works at a total cost of US$283 million. Interest by industries and government agencies to develop the river further for shipping is high and increasing. Historically, as environmental protection agencies were created, construction impacts on natural resources were increasingly addressed during the planning process and, in some cases, assessments of these impacts greatly altered or halted proposed construction projects. Careful planning of future shipping-channel construction and maintenance projects, including a thorough analysis of the expected environmental impacts, could greatly reduce financial costs and ecological damages as compared to past shipping-channel construction projects.

Michigan

Challenges in quantifying air-water carbon dioxide flux using estuarine water quality data: Case study for Chesapeake Bay

Estuaries play an uncertain but potentially important role in the global carbon cycle via CO 2 outgassing. The uncertainty mainly stems from the paucity of studies that document the full spatial and temporal variability of estuarine surface water partial pressure of carbon dioxide ( p CO 2 ). Here, we explore the potential of utilizing the abundance of pH data from historical water quality monitoring programs to fill the data void via a case study of the mainstem Chesapeake Bay (eastern United States). We calculate p CO 2 and the air-water CO 2 flux at monthly resolution from 1998 to 2018 from tidal fresh to polyhaline waters, paying special attention to the error estimation. The biggest error is due to the pH measurement error, and errors due to the gas transfer velocity, temporal sampling, the alkalinity mixing model, and the organic alkalinity estimation are 72%, 27%, 15%, and 5%, respectively, of the error due to pH. Seasonal, interannual, and spatial variability in the air-water flux and surface p CO 2 is high, and a correlation analysis with oxygen reveals that this variability is driven largely by biological processes. Averaged over 1998–2018, the mainstem bay is a weak net source of CO 2 to the atmosphere of 1.2 (1.1, 1.4) mol m −2 yr −1 (best estimate and 95% confidence interval). Our findings suggest that the abundance of historical pH measurements in estuaries around the globe should be mined in order to constrain the large spatial and temporal variability of the CO 2 exchange between estuaries and the atmosphere.

Maryland, Virginia

A synthesis of the biology and ecology of sculpin species in the Laurentian Great Lakes and implications for the adaptive capacity of the benthic ecosystem

The Laurentian Great Lakes have experienced recent ecosystem changes that could lead to reductions in adaptive capacity and ultimately a loss of biodiversity and production throughout the food web. Observed changes in Great Lakes benthic communities include declines of native species and widespread success of invasive species like dreissenid mussels in all but Lake Superior. Understanding the ecology of native benthic deepwater preyfish and the reasons for their declines is important for predicting future losses in adaptive capacity and diversity, as well as managing the Great Lakes ecosystem to avoid such losses. Native sculpin species ( Cottus bairdii , C. cognatus , C. ricei , Myoxocephalus thompsonii ) historically were among the most abundant of the Great Lakes native deepwater benthic preyfish community and are an important link between offshore benthic and pelagic food webs. With one exception, these species have declined in abundance throughout the Great Lakes in recent years, but relatively little is known about their biology and ecology. This review synthesizes the available knowledge for the Great Lakes sculpin species and provides suggestions for future research efforts, which include understanding reproductive ecology and spawning behavior, connectivity and dispersal of populations, early life history, and influences of interactions with native and non-native species.

Great Lakes

Climate variation and its effects on our land and water : Part A, Earth science in climate research

To better coordinate information being generated by the U.S. Geological Survey, a workshop was convened near Denver, Colo., on December 7-9, 1976, to exchange ideas about research that is oriented toward climate, climate variation, and the effects of climate on the Nation 's land and water resources. This is the first circular of a three-part report resulting from that workshop. Hydrologic records provide information to the earth scientist about the responses of ground water, surface water, and glaciers to climatic change; geologic sequences provide evidence of earth-surface water, and glaciers to climatic change; geologic sequences provide evidence of earth-surface responses to climatic change; biological records yield information about the effects of climatic change on the Earth 's biota; archeological records tell us where and how man was able to live under changing climatic conditions; and historical records allow the specific effects of short-term changes in climate to be accurately documented. The interrelation between present and past geologic environments, various methods of study , and the span of time over which the results can be applied are shown in a table. (Woodard-USGS)

Circular

Climate variation and its effects on our land and water : Part B, Current research by the Geological Survey

To better coordinate information being generated by the U.S. Geological Survey, a workshop was convened near Denver, Colo., on December 7-9, 1976, to exchange ideas about research that is oriented toward climate, climate variation, and the effects of climate on the Nation 's land and water resources. This is the first circular of a three-part report resulting from that workshop. Hydrologic records provide information to the earth scientist about the responses of ground water, surface water, and glaciers to climatic change; geologic sequences provide evidence of earth-surface water, and glaciers to climatic change; geologic sequences provide evidence of earth-surface responses to climatic change; biological records yield information about the effects of climatic change on the Earth 's biota; archeological records tell us where and how man was able to live under changing climatic conditions; and historical records allow the specific effects of short-term changes in climate to be accurately documented. The interrelation between present and past geologic environments, various methods of study , and the span of time over which the results can be applied are shown in a table. (Woodard-USGS)

Circular

Climate variation and its effects on our land and water : Part C, Geological Survey climate plan

To better coordinate information being generated by the U.S. Geological Survey, a workshop was convened near Denver, Colo., on December 7-9, 1976, to exchange ideas about research that is oriented toward climate, climate variation, and the effects of climate on the Nation 's land and water resources. This is the first circular of a three-part report resulting from that workshop. Hydrologic records provide information to the earth scientist about the responses of ground water, surface water, and glaciers to climatic change; geologic sequences provide evidence of earth-surface water, and glaciers to climatic change; geologic sequences provide evidence of earth-surface responses to climatic change; biological records yield information about the effects of climatic change on the Earth 's biota; archeological records tell us where and how man was able to live under changing climatic conditions; and historical records allow the specific effects of short-term changes in climate to be accurately documented. The interrelation between present and past geologic environments, various methods of study , and the span of time over which the results can be applied are shown in a table. (Woodard-USGS)

Circular

Bibliography of references to avian botulism: Update

This bibliography, first compiled in 1970 (Allen and Wilson 1977) and published in 1977 in response to many requests for information on avian botulism, has been updated to include the literature published through 1980. In general, only articles dealing primarily with the avian disease are included, as opposed to those concerned with the various aspects of the biology of Clostridium botulinum , either type C or E. A few exceptions, such as Bengtson's report of the first isolation and description of the type C organism, are included for their historical interest. Progress reports and other administrative documents not available for distribution on request are excluded, as are most textbook accounts, which are generally summaries of work published elsewhere. This bibliography was a cooperative effort by the National Wildlife Health Laboratory, U.S. Fish and Wildlife Service, and the U.S. National Park Service. The National Park Service provided partial funding for the work through Contract No. 89100-0491. Although the authors attempted to list every important reference, they make no claim to complete coverage of the published literature. The authors will be grateful to users of the bibliography who call attention to errors or omissions. Wayne I. Jensen (Retired) Milton Friend, Director, National Wildlife Health Laboratory

Special Scientific Report - Wildlife

Climate change is advancing spring onset across the U.S. national park system

Many U.S. national parks are already at the extreme warm end of their historical temperature distributions. With rapidly warming conditions, park resource management will be enhanced by information on seasonality of climate that supports adjustments in the timing of activities such as treating invasive species, operating visitor facilities, and scheduling climate-related events (e.g., flower festivals and fall leaf-viewing). Seasonal changes in vegetation, such as pollen, seed, and fruit production, are important drivers of ecological processes in parks, and phenology has thus been identified as a key indicator for park monitoring. Phenology is also one of the most proximate biological responses to climate change. Here, we use estimates of start of spring based on climatically modeled dates of first leaf and first bloom derived from indicator plant species to evaluate the recent timing of spring onset (past 10–30 yr) in each U.S. natural resource park relative to its historical range of variability across the past 112 yr (1901–2012). Of the 276 high latitude to subtropical parks examined, spring is advancing in approximately three-quarters of parks (76%), and 53% of parks are experiencing “extreme” early springs that exceed 95% of historical conditions. Our results demonstrate how changes in climate seasonality are important for understanding ecological responses to climate change, and further how spatial variability in effects of climate change necessitates different approaches to management. We discuss how our results inform climate change adaptation challenges and opportunities facing parks, with implications for other protected areas, by exploring consequences for resource management and planning.

Ecosphere

Bottom trawl assessment of Lake Ontario's benthic preyfish community, 2023

Since 1978, surveys of Lake Ontario preyfish communities have provided information on the status and trends of the benthic preyfish community related to Fish Community Objectives that includes understanding preyfish population dynamics and community diversity. Beginning in 2015, the benthic preyfish survey expanded from US-only to incorporate Canadian sites, increasing the survey’s spatial coverage to a lake-wide scale. Additionally, sampling in eastern US embayments (Black River, Chaumont, Guffin, and Henderson Bays), that were historically sampled during a September bottom trawl survey to index Yellow Perch (Perca flavescens; 1978–2007), resumed in 2015. The current survey provides abundance indices for sculpins, Round Goby (Neogobius melanostomus) and Bloater (Coregonus hoyi) with survey techniques, gear and timing comparable to Lake Michigan. This alignment provides a necessary biological reference point for measuring the success of Lake Ontario Bloater reintroduction. In 2023, the collaborative benthic preyfish survey completed 188 bottom trawl tows across main lake and embayment sites at depths from 6 to 249 m. In total, the 2023 survey sampled 85,801 fish from 38 species. Round Goby was the most common species comprising 43% of the total catch, followed by Deepwater Sculpin (Myoxocephalus thompsonii), and Alewife (Alosa pseudoharengus) at 22% and 13%, respectively. Slimy Sculpin (Cottus cognatus) lake-wide biomass density (0.06 kg/ha) remained low relative to historical observations from US waters during the 1980-1990s and was orders of magnitude lower in US than Canadian waters. Lake-wide Deepwater Sculpin biomass density remains high since the population recovery (4.1 kg/ha). Embayment catches continue to have unique species assemblages compared to main lake habitat. Historically common native benthic preyfish species like Trout-perch (Percopsis omiscomaycus), Spottail Shiner (Notropis hudsonius), and darters (Etheostoma spp.), that are now rare at main lake trawl sites, still occur in some embayment trawl sites.

Lake Ontario

Evapotranspiration by remote sensing: An analysis of the Colorado River Delta before and after the Minute 319 pulse flow to Mexico

The unique hydrologic conditions characterizing riparian ecosystems in dryland (arid and semi-arid) areas help maintain high biodiversity and support high levels of primary productivity compared to associated uplands. In western North America, many riparian ecosystems have been damaged by altered flow regimes (e.g., impoundments and diversions) and over utilization of water resources (e.g., groundwater pumping for agriculture and human consumption). This has led some state and national governments to provide occasional environmental flows to address the declining condition of such riparian systems. In a historic agreement between the United States and Mexico, 130 million cubic meters (mcm) of water was released to the lower Colorado River Delta in Mexico, with the intent to evaluate the hydrological and biological response of the ecosystem. We used the Moderate Resolution Imaging Spectroradiometer (MODIS) Enhanced Vegetation Index (EVI) to estimate long term (2000–2014) and short term (pre- and post-pulse; 2013 and 2014) evapotranspiration (ET; used herein as an indicator of plant health) of the delta’s riparian corridor. We found the pulse flow helped reverse a decline in ET from 2011 to 2013, with a small, but statistically significant increase in 2014 (P < 0.05). ET was greater than 100 mcm in all years analyzed (even in years without surface flows) and exceeded surface flows in all years except 2000 (result of excess flows following an El Niño cycle in 1997) and 2014 (year of the pulse flow). Based on groundwater salinities and MODIS ET estimates, we estimated groundwater flow into the delta to be ∼103 mcm. Shallow groundwater salinities in the riparian zone increased from 1.30 g L −1 in the most upstream reach to 2.77 g L −1 in the most downstream reach we measured, partly due to uptake of water by riparian vegetation and partly to intrusion of saline agricultural return flows. The disparity between surface flows and ET can likely be explained by the predominantly phreatophytic plants characterizing the area, which draw water from the aquifer. These results also suggest that the deteriorated condition of vegetation within the riparian zone might not be reversed by a single pulse event and could instead require subsequent pulse flows as a long term strategy to restore vegetation in this riparian ecosystem.

Ecological Engineering

Examining differences between recovered and declining endangered species

Between 1973 and 1999, 43 species in the United States were reclassified from endangered to threatened or removed entirely from the Endangered Species List. Of these, 23 were identified as recovered. In 1999 the U.S. Fish and Wildlife Service ( USFWS) published a list of 33 additional species for possible reclassification and/or delisting. We initiated this study to examine why some endangered species recover but others continue to decline and to identify differences in management activities between these two groups. We defined recovered/recovering species as previously recovered species and the additional recovered/recovering species listed by the USFWS. We defined declining species as those identified as declining in the most recent USFWS Report to Congress. Information on recovered/recovering and declining species was gathered from relevant literature, recovery plans, U.S. Federal Register documents, and individuals responsible for the recovery management of each species. We used this information to examine (1) the percentage of current and historic range covered by management activities; (2) threats affecting the species; (3) population sizes at the time of listing; (4) current versus historic range size; and (5) percentage of recovery management objectives completed. Although few statistical analyses provided significant results, those that did suggest the following differences between recovered/recovering and declining species: (1) recovered/recovering species face threats that are easier to address; (2) recovered/recovering species occupy a greater percentage of their historic range; and (3) recovered/recovering species have a greater percentage of their recovery management objectives completed. Those species with threats easier to address and that occupy a greater percentage of their historic range are recovered/recovering. In contrast, declining species face threats more difficult to address and occupy significantly less of their historic range. If this remains true, future species recovery may require more time and resources.

Conservation Biology

A bibliography of references to avian botulism

This bibliography, first compiled in 1970 in response to many requests for information on avian botulism, has been updated to include the literature published through 1975. In general, only articles dealing primarily with the avian disease are included, as opposed to those concerned with various aspects of the biology of Clostridium botulinum , either type C or type E. A few exceptions, such as Bengton’s report of the first isolation and description of the type C organism, are included for their historical interest. Progress reports and other administrative documents not available for distribution or request are excluded, as are textbook accounts, which are generally summaries of work published elsewhere. Although Mr. Allen and Mrs. Wilson have attempted to list every important reference, they make no claim to complete coverage of the published literature. The authors will be grateful to users of the bibliography who call attention to errors or omissions.

Special Scientific Report - Wildlife

Is science in danger of sanctifying the wolf?

Historically the wolf ( Canis lupus ) was hated and extirpated from most of the contiguous United States. The federal Endangered Species Act fostered wolf protection and reintroduction which improved the species' image. Wolf populations reached biological recovery in the Northern Rocky Mountains and upper Midwest, and the animal has been delisted from the Endangered Species List in those areas. Numerous studies in National Parks suggest that wolves, through trophic cascades, have caused ecosystems to change in ways many people consider positive. Several studies have been conducted in Yellowstone National Park where wolf interactions with their prey, primarily elk ( Cervus elaphus ), are thought to have caused reduction of numbers or changes in movements and behavior. Some workers consider the latter changes to have led to a behaviorally-mediated trophic cascade. Either the elk reduction or the behavioral changes are hypothesized to have fostered growth in browse, primarily willows ( Salix spp.) and aspen ( Populus spp.), and that growth has resulted in increased beavers ( Castor Canadensis ), songbirds, and hydrologic changes. The wolf's image thus has gained an iconic cachet. However, later research challenges several earlier studies' findings such that earlier conclusions are now controversial; especially those related to causes of browse regrowth. In any case, any such cascading effects of wolves found in National Parks would have little relevance to most of the wolf range because of overriding anthropogenic influences there on wolves, prey, vegetation, and other parts of the food web. The wolf is neither a saint nor a sinner except to those who want to make it so.

Biological Conservation

Beyond barriers: Fish assemblage recovery following dam removal on the Cuyahoga River, a Lake Erie tributary

Dam removals are increasing globally, yet ecological outcomes vary widely because biological recovery depends on post-removal connectivity and access to source populations. We evaluated how multiple dam removals and remaining fragmentation influenced fish assemblage recovery in the Cuyahoga River (OH, United States), a historically polluted Great Lakes tributary now undergoing extensive remediation and restoration. Using fish assemblage data collected from 1984 to 2024 across reaches downstream, within, and upstream of the Gorge Plant Dam (GPD), an 18-m barrier slated for removal, we quantified spatial and temporal change with ordination, trajectory, and distance-based redundancy analyses. Downstream assemblages showed a clear shift through time and gained 15 newly detected taxa after the 2020 Brecksville Dam removal increased longitudinal connectivity to Lake Erie by 39 river kilometers, more than doubling free-flowing habitat below GPD. In contrast, assemblages upstream of GPD exhibited limited change and patterns consistent with redistribution of resident species rather than colonization-driven turnover. Across the full time series, site position relative to GPD and the rate of dam removal were the strongest predictors of assemblage variation, with habitat gradients (e.g. depth, velocity, turbidity, and canopy cover) further differentiating reaches. Together, these results show that connectivity and barrier position shape assemblage recovery following dam removal. Most newly detected taxa downstream were native, though three were nonnative, indicating trade-offs between recolonization and nonnative spread.

Ohio

Field guide to the major organisms and processes building reefs and islands of the Dry Tortugas: the Carnegie Dry Tortugas Laboratory Centennial Celebration (1905-2005)

This guide to the geology and biology of the Dry Tortugas is divided into four sections: 1) geologic and anthropogenic features you will pass on your trip to and from the Tortugas, 2) a summary of items of Tortugas geologic, historic, and human interest and what you will experience at Loggerhead Key while walking and snorkeling, 3) a summary of recent coral-monitoring results, and 4) an Appendix with tributes to some of the significant research accomplishments of researchers at the laboratory between 1905 and 1939.

Florida

Development of new information to inform fish passage decisions at the Yale and Merwin hydro projects on the Lewis River, Washington—Final report, 2018

The reintroduction of extirpated salmonids to historically occupied areas is becoming increasingly common as a conservation and recovery strategy. Often, reintroductions are implemented after the factors that originally led to species extirpation have been reduced, eliminated, or mitigated. For anadromous Oncorhynchus spp. (Pacific salmon) and O. mykiss (steelhead), addressing barriers to migration, which have been a primary factor in the decline and extirpation of many populations, has been an integral component of recovery efforts. Mitigation has included barrier removal, developing fish passage opportunities, and (or) actively trapping and hauling juvenile and adult anadromous salmonids around barriers. With any reintroduction, there are a number of concerns regarding the ecological impact of the reintroduction efforts. Three of the main tenets to consider when assessing reintroductions are (1) the potential benefits if reintroduction is successful, (2) the biological risk through interactions of reintroduced strains with existing populations, and (3) the factors potentially limiting a successful reintroduction. This report focuses on information and data to address the second and third factors as they apply to the upper Lewis River in Washington. The upper Lewis River historically contained wild populations of O. tshawytscha (Chinook salmon), O. kisutch (coho salmon), and steelhead. These populations were extirpated after completion of hydropower facilities on Lake Merwin in 1932, Yale Lake in 1953, and Swift Reservoir in 1958, which prevented fish from migrating to and from ocean environments. However, recent licenses issued by the Federal Energy Regulatory Commission require the installation and operation of an upstream fish passage facility at Lake Merwin and a downstream fish passage facility at Swift Reservoir. The licenses were developed in consultation with the National Marine Fisheries Service and the U.S. Fish and Wildlife Service. The overarching goal of this fish reintroduction project is to establish viable, self-sustaining, naturally reproducing, harvestable populations of spring Chinook salmon, winter steelhead, and coho salmon at levels higher than minimum viable populations. This report uses a combination of field data and existing information to address six key objectives related to the reintroduction in order to inform decisions about passage at the Yale Lake and Lake Merwin hydropower projects. The objectives are (1) a review of information relevant to anadromous fish reintroduction and full fish passage; (2) a habitat assessment of tributaries to Swift Reservoir, Yale Lake, and Lake Merwin; (3) a field study to assess adult potential for spawning success; (4) an assessment of juvenile production and outmigration success; (5) a Lake Merwin predator impact study; and (6) a set of studies assessing interactions between anadromous and resident fish.

Washington

Bottom trawl assessment of Lake Ontario's benthic preyfish community, 2022

Since 1978, surveys of Lake Ontario preyfish communities have provided information on the status and trends of the benthic preyfish community related to Fish Community Objectives that includes understanding preyfish population dynamics and community diversity. Beginning in 2015, the benthic preyfish survey expanded from US-only to incorporate Canadian sites, increasing the survey’s spatial coverage to a lake-wide scale. Additionally, sampling in eastern US embayments (Black River, Chaumont, Guffin, and Henderson Bays), that were historically sampled during a September bottom trawl survey to index Yellow Perch ( Perca flavescens ; 1978–2007), resumed in 2015. The current survey provides abundance indices for sculpins, Round Goby ( Neogobius melanostomus ) and Bloater ( Coregonus hoyi ) with survey techniques, gear and timing comparable to Lake Michigan. This alignment provides a necessary biological reference point for measuring the success of Lake Ontario Bloater reintroduction. In 2022, the collaborative benthic preyfish survey completed 171 bottom trawl tows across main lake and embayment sites at depths from 6 to 222 m. In total, the 2022 survey sampled 141,552 fish from 34 species. Round Goby was the most numerically abundant species comprising 36% of the total catch, followed by Alewife ( Alosa pseudoharengus ) and Deepwater Sculpin ( Myoxocephalus thompsonii ), at 20% and 16%, respectively. Alewife accounted for most (623 kg) of the fish biomass sampled during the 2022 survey (total=2,197 kg), followed by Deepwater Sculpin (547 kg), and Round Goby (262 kg). Slimy Sculpin ( Cottus cognatus ) lake-wide biomass density (0.03 kg/ha) remained low relative to historical observations from US waters during the 1980-1990s and was similar to the average from the previous three survey years (2019-2021 average 0.04 ± 0.02 kg/ha). Lake-wide Deepwater Sculpin biomass density reached a new high (4.4 kg/ha) in 2022. Embayment catches continue to have unique species assemblages compared to main lake habitat. Historically common native benthic preyfish species like Trout-perch ( Percopsis omiscomaycus ), Spottail Shiner ( Notropis hudsonius ), and darters ( Etheostoma spp.), that are now rare at main lake trawl sites, still occur in some embayment trawl sites.

Lake Ontario