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Results for “California Geographer”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

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At least 163 records · Page 9Linked to original sources
USGS1997

Preliminary geologic map of the Little Piute Mountains, California: A digital database

The Little Piute Mountains Digital database contains digital geologic and geographic information for the study area. The geology was mapped at a scale of 1:8,000, and the topographic information was input from the Little Piute Mountains, CA 1:24,000 quadrangle. The accuracy of the spatial information is limited to the input scale. Postscript files, originally published in paper format as Open-file map 95-598, have been included for those who do not have access to a geographic information system. The files are equivalent to those which produced the hard-copy open file. They can be printed on any device equipped to print postscript files of the appropriate file size.

California↗
USGS1987

In search of the Abrams post office, Trinity County

An understanding of earth history depends in part on stratigraphy, a division of geology in which the distinctive features of natural units or formations of layered rocks are studied and described and names are assigned to them. The procedures for describing and naming rock units in a uniform way are incorporated in documents known as stratigraphic codes. The North American Stratigraphic Code (1983) is currently used by most geologists in the United States when formation names are selected. Rock unit names consist of a geographic name, generally taken from a natural feature near the locality where the unit was first described, followed by a descriptive feature, usually the dominant rock type in the unit. Although the procedure for naming a rock unit seems straightforward, stratigraphic nomenclature can lead to confusion when the principles outlined in the stratigraphic code are ignored or incorrectly applied. This paper traces the naming of the Abrams Mica Schist, one of the major units of the northern California Klamath Mountains. It describes how uncertainty about the location of the geographic feature after which the unit was named has led to conflicting terminology. The search revealed some interesting history of the early days of mining in the Coffee Creek region of the Trinity Alps in Trinity County.

California Geology↗
USGS2020

Slender salamanders (genus Batrachoseps) reveal Southern California to be a center for the diversification, persistence, and introduction of salamander lineages

Background The southern California biodiversity hotspot has had a complex geological history, with both plate tectonic forces and sea level changes repeatedly reconfiguring the region, and likely driving both lineage splittings and extinctions. Here we investigate patterns of genetic divergence in two species of slender salamanders (Plethodontidae: Batrachoseps ) in this region. The complex geological history in combination with several organismal traits led us to predict that these species harbor multiple ancient mitochondrial lineages endemic to southern California. These species belong to a clade characterized by fine-scale mitochondrial structure, which has been shown to track ancient splits. Both focal species, Batrachoseps major and B. nigriventris , are relatively widely distributed in southern California, and estimated to have persisted there across millions of years. Recently several extralimital populations of Batrachoseps were found in the San Joaquin Valley of California, a former desert area that has been extensively modified for agriculture. The origins of these populations are unknown, but based on morphology, they are hypothesized to result from human-mediated introductions of B. major . Methods We sequenced the mitochondrial gene cytochrome b from a geographically comprehensive sampling of the mitochondrial lineages of B. major and B. nigriventris that are endemic to southern California. We used phylogenetic analyses to characterize phylogeographic structure and identify mitochondrial contact zones. We also included the San Joaquin Valley samples to test whether they resulted from introductions. We used a bootstrap resampling approach to compare the strength of isolation-by-distance in both Batrachoseps species and four other salamander species with which they co-occur in southern California. Results The northern lineage of B. major harbors at least eight deeply differentiated, geographically cohesive mitochondrial subclades. We identify geographic contact between many of these mtDNA lineages and some biogeographic features that are concordant with lineage boundaries. Batrachoseps nigriventris also has multiple deeply differentiated clades within the region. Comparative analyses highlight the smaller spatial scales over which mitochondrial divergence accumulates in Batrachoseps relative to most other salamander species in southern California. The extralimital populations of Batrachoseps from the San Joaquin Valley are assigned to B. major and are shown to result from at least two independent introductions from different source populations. We also suggest that B. major on Catalina Island, where it is considered native, may be the result of an introduction. Some of the same traits that facilitate the build-up of deep phylogeographic structure in Batrachoseps likely also contribute to its propensity for introductions, and we anticipate that additional introduced populations will be discovered.

California↗
USGS2019

Using the Distinct Population Segment concept to protect fishes with low levels of genomic differentiation: conservation of an endemic minnow (Hitch, Lavinia exilicauda)

In the United States, the Endangered Species Act (ESA) of 1973 was enacted to conserve species which are endangered or threatened throughout all or a portion of their range. The definition of ‘species’ includes subspecies and distinct population segments (DPSs). In freshwater fishes, use of DPS designations has largely been restricted to salmonid fishes (Salmonidae), although the DPS concept is increasingly applied to other fishes as well. As more taxa approach threatened status, the difficult question becomes what to do when genetic evidence does not strongly support formal taxonomic designations (full species or subspecies). We examine the potential use of the DPS concept to protect fishes using the example of Hitch ( Lavinia exilicauda ), a cyprinid fish endemic to California. The Hitch is divided up into three formally described, geographically separated subspecies. However, genomic studies (RADseq), presented here with three independent analyses using a large data set, only weakly support subspecies designations. Results suggest population but not subspecies structure. Nevertheless, conventional taxonomic methods, strong contemporary isolation, the importance of protecting genetic diversity, and high cultural values still qualify all three designated subspecies for DPS status and demonstrate how taxa such as Clear Lake Hitch can warrant protection under the ESA.

Transactions of the American Fisheries Society↗
USGS1985

Environmental setting of San Francisco Bay

San Francisco Bay, the largest bay on the California coast, is a broad, shallow, turbid estuary comprising two geographically and hydrologically distinct subestuaries: the northern reach lying between the connection to the Pacific Ocean at the Golden Gate and the confluence of the Sacramento-San Joaquin River system, and the southern reach (herein called South Bay) between the Golden Gate and the southern terminus of the bay. The northern reach is a partially mixed estuary dominated by seasonally varying river inflow, and the South Bay is a tidally oscillating lagoon-type estuary. Freshwater inflows, highest during winter, generate strong estuarine circulation and largely determine water residence times. They also bring large volumes of dissolved and particulate materials to the estuary. Tidal currents, generated by mixed semidiurnal and diurnal tides, mix the water column and, together with river inflow and basin geometry, determine circulation patterns. Winds, which are strongest during summer and during winter storms, exert stress on the bay's water surface, thereby creating large waves that resuspend sediment from the shallow bay bottom and, together with the tidal currents, contribute markedly to the transport of water masses throughout the shallow estuary. ?? 1985 Dr W. Junk Publishers.

Hydrobiologia↗
USGS2008

Genetic analysis of paramyxovirus isolates from pacific salmon reveals two independently co-circulating lineages

Viruses with the morphological and biochemical characteristics of the family Paramyxoviridae (paramyxoviruses) have been isolated from adult salmon returning to rivers along the Pacific coast of North America since 1982. These Pacific salmon paramyxoviruses (PSPV), which have mainly been isolated from Chinook salmon Oncorhynchus tshawytscha, grow slowly in established fish cell lines and have not been associated with disease. Genetic analysis of a 505-base-pair region of the polymerase gene from 47 PsPV isolates produced 17 nucleotide sequence types that could be grouped into two major sublineages, designated A and B. The two independently co-circulating sublineages differed by 12.1-13.9% at the nucleotide level but by only 1.2% at the amino acid level. Isolates of PSPV from adult Pacific salmon returning to rivers from Alaska to California over a 25-year period showed little evidence of geographic or temporal grouping. Phylogenetic analyses revealed that these paramyxoviruses of Pacific salmon were most closely related to the Atlantic salmon paramyxovirus (ASPV) from Norway, having a maximum nucleotide diversity of 26.1 % and an amino acid diversity of 19.0%. When compared with homologous sequences of other paramyxoviruses, PSPV and ASPV were sufficiently distinct to suggest that they are not clearly members of any of the established genera in the family Paramyxoviridae. in the course of this study, a polymerase chain reaction assay was developed that can be used for confirmatory identification of PSPV. ?? Copyright by the American Fisheries Society 2008.

Journal of Aquatic Animal Health↗
USGS2020

Population and habitat analyses for greater sage-grouse (Centrocercus urophasianus) in the bi-state distinct population segment—2018 update

Executive Summary The Bi-State Distinct Population Segment (Bi-State DPS) of greater sage-grouse ( Centrocercus urophasianus , hereinafter “sage-grouse”) represents a genetically distinct and geographically isolated population that straddles the border between Nevada and California. The primary threat to these sage-grouse populations is the expansion of single-leaf pinyon ( Pinus monophylla ) and Utah juniper ( Juniperus osteosperma ) into sagebrush ecosystems, which fragments and reduces population connectivity and survival. Other important threats include low water availability during brood-rearing, particularly during drought, and increased predation by common ravens ( Corvus corax ), a generalist predator often associated with anthropogenic resource subsidies. Although the Bi-State DPS occurs at high elevations relative to sage-grouse range-wide, changes in historical wildfire cycles and the conversion of native shrubs to invasive annual grasslands still threaten these populations. The Bi-State DPS has undergone multiple federal status assessments and associated litigation. For example, in October of 2013, the Bi-State DPS was proposed for listing as threatened under the Endangered Species Act of 1973 by the U.S. Fish and Wildlife Service (USFWS), then withdrawn in April 2015. The withdrawal decision was challenged, and in May 2018, a Federal district court ordered the withdrawal decision to be vacated, and USFWS was required to re-open the October 2013 listing evaluation. In response, the U.S. Geological Survey (USGS), with State and Federal collaborators, embarked on a multipronged analysis to provide current and best available science regarding population status of sage-grouse within the Bi-State DPS. Using data from a long-term monitoring program, we carried out four analytical study objectives, and here, we provide preliminary results of these analyses. First, we used integrated population modeling (IPM) to predict annual population abundance and annual finite rate of population change for the Bi-State DPS, as a whole, and for each subpopulation between 1995 and 2018. Because sage-grouse exhibit population cycles (periodic increases and decreases in abundance across approximately 6- to 10-year wavelengths), we estimated trends across three nested temporal scales that represent one (11 years), two (18 years), and three (24 years) complete population cycles. These estimates of relatively long-term averaged population change account for temporal (that is, interannual) variation. Our model predicted population abundance for the Bi-State DPS during 2018 at 3,305 individuals (2,247–4,683), with the majority occupying Bodie Hills and Long Valley. The model also predicted cyclic dynamics in abundance through time with evidence of 24-year population growth and slight trends of decline over the past 18 years. Specifically, across the Bi-State DPS as a whole, we estimated annual average at 0.99, 0.99, and 1.02 over the one, two, and three population cycles, which equated to a 10.5 percent, 16.6 percent decrease, and 60.0 percent increase in abundance over the 11-, 18-, and 24-year cycles. Estimated abundance in 2018 had not reached numbers lower than those predicted during 1995. However, we found spatial variation in population trends across the three cycles. Bodie Hills subpopulation comprised the greatest (1,521) and exhibited average annual greater than 1.0 across all periods resulting in average annual increases of 7 percent. This relatively large subpopulation has grown 5 times larger than what was predicted in 1995 while experiencing cyclical dynamics within that period. Conversely, other smaller subpopulations within the Bi-State DPS exhibited average annual equal to or less than 1.0 resulting in estimated 10-year risks of extirpation ranging from 2.0 to 76.1 percent. In general, evidence of decline among smaller subpopulations was greatest for the most recent period (2008–18) compared to a period that encompassed three full population cycles (24-year). This difference coincides with an intense period of drought that began in 2012. For comparative purposes as part of this first objective, we conducted a similar analysis for populations of sage-grouse within Nevada and California but outside the Bi-State DPS. We developed a region-wide and distance-weighted IPM using lek count from Nevada Department of Wildlife (NDOW) and California Department of Fish and Wildlife (CDFW) databases and with telemetry data collected by USGS across 12 sage-grouse subpopulations. Our models predicted similar patterns in population cycling outside the Bi-State DPS but with much stronger evidence of long-term declines across 24 years. Specifically, median averaged across each year of the 11-, 18-, and 24-year periods resulted in average annual values of 0.94, 0.97, and 0.99, respectively. These values equate to 41.0 percent, 38.5 percent, and 21.3 percent declines over the corresponding periods. Second, we used lek count data in a state-space modeling framework to compare trends in population abundance across different spatial scales (that is, leks versus Bi-State DPS). This hierarchical framework allowed us to disentangle declines associated with climate conditions as opposed to other local level factors that might signal the need for management intervention. Specifically, we identified 7 leks that were both declining and recently decoupled from larger spatial scale trends, typically governed by climatic conditions (referred to as soft or hard signals). The goal of this analysis was to provide an early warning system that might have implications for conservation actions at local scales. Third, we developed phenological (spring, summer–fall, and winter) and reproductive life stage (nesting, early brood-rearing, and late-brood rearing) based resource selection functions using various environmental covariates. We report rankings of variable importance for each season and life stage, developed maps of habitat selection indices (HSI), binned categories representing low, moderate, and high classes of quality (where any category greater than or equal to low indicated selected habitat) for each phenological season and life stage, and produced composite maps by selected phenological and reproductive stage to estimate annual habitat. Fourth, we used for each lek within the Bi-State DPS to carry out a spatial analysis that quantified substantial changes in the distribution of occupied habitat across long- (24-year) and short- (11-year) term periods. Owing to differences among available datasets, the long-term analysis primarily reflected spatial shifts among subpopulations comprising the majority of the Bi-State DPS (that is, Bodie Hills and Long Valley) while the short-term analysis also quantified changes among subpopulations along the periphery. Over long and short-term periods, the overall distribution of occupied habitat (as measured by 99 percent utilization distributions intersecting any quantified habitat) was reduced by 20,573 ha and 55,492 ha, respectively. Occupied core areas (as measured by 50 percent utilization distributions intersecting any quantified habitat) over long-term periods were solely located in Bodie Hills and Long Valley. Although nearly all subpopulations experienced contractions in occupied overall and core distribution, Bodie Hills experienced spatial expansion that occurred with concomitant spatial contraction at Long Valley over both periods. Subpopulations at the northern (Pine Nuts), central (Sagehen) and southern (White-Mountains) extents of the Bi-State DPS also experienced spatial contraction over the short-term period. These findings, coupled with those of population trends, indicate long-term patterns in redistribution of sage-grouse from Long Valley and peripheral subpopulations to Bodie Hills. That is, sage-grouse subpopulations at the periphery are declining while the largest population at the core is increasing, which could have meaningful impacts on overall metapopulation persistence. We provide evidence for loss of occupied habitat (reduced distribution) given local extirpation of subpopulations. Fifth, we calculated percentages of selected phenological, life stage, and annual habitat that each subpopulation contributed to the Bi-State DPS. We then intersected these maps with a composite estimate of occupied habitat from the fourth objective and calculated percentages of selected habitat likely occupied by sage-grouse that each subpopulation contributed to the Bi-State DPS. These values provide evidence for loss of occupied habitat and subsequent reductions in spatial distribution given reductions in abundance and, in some cases, extirpation of leks within subpopulations. Lastly, we carried out an initial in-depth analysis of selection for irrigated pastures and wet meadows during the brood-rearing stage for the Long Valley subpopulation. We chose this subpopulation because it represents a population core, representing 26.5 percent of total sage-grouse within the Bi-State DPS, and has exhibited long-term declines in abundance and distribution. This subpopulation is highly sensitive to precipitation and other factors that influence water availability. Models predicted higher use of the interior portions of irrigated pastures and wet meadows during late brood-rearing period, which represented a potentially risky use of habitat that was exacerbated during periods of low moisture (for example, drought, reduced water delivery, or both). Sage-grouse typically used edges of riparian areas and pastures, largely because the interior of these mesic areas consisted of considerably less overhead concealment cover (for example, shrubs) that likely resulted in a higher risk of mortality. We found that a lack of water delivery to pastures in the form of overwinter precipitation or diversion ditches increased the movements of sage-grouse to the interior of pastures. Although further investigation of water delivery impacts on chick survival are warrented, our initial findings regarding resource selection may explain recent declines in population growth at Long Valley.

California, Nevada↗
USGS1991

Mammal mortality at Arizona, California, and Nevada gold mines using cyanide extraction

Five-hundred nineteen mammals were reported dead at cyanide-extraction gold mines in Arizona [USA], California, and Nevada from 1984 through 1989. Most numerous were rodents (34.9%) and bats (33.7%); 'bat' was the most often reported category among 24 species or species groups. There are an estimated 160 cyanide-extraction gold mines in these three states, and the number is increasing. Ten mammal species listed as endangered, threatened, rare, protected, or species of special concern are known to have cyanide-extraction gold mines within their geographic ranges.

California Fish and Game↗
USGS1973

Variations in Sr, Rb, K, Na, and Initial Sr87/Sr86 in Mesozoic Granitic Rocks and Intruded Wall Rocks in Central California

Initial Sr 87 /Sr 86 of granitic rocks which are exposed north of the Garlock fault in California, and which represent the entire 130-m.y. time span of emplacement during the Mesozoic, ranges mainly from 0.7031 to 0.7082, with one value of 0.7094. A systematic areal variation, independent of age, exists for initial Sr 87 /Sr 86 in these granitic rocks and is the same as the areal variation in initial Sr 87 /Sr 86 of superjacent upper Cenozoic basalts and andesites. Two values of initial Sr 87 /Sr 86 , 0.7040 and 0.7060, mark natural separations of granitic rock data on K-Rb, K-Sr, and Rb/Sr-Rb variation diagrams, and also, when contoured, seem to represent geographic markers of paleo-geographic, geochemical, and physiographic significance. Upper Precambrian sedimentary and metamorphic rocks in California crop out only in the region where initial Sr 87 /Sr 86 of granitic rocks is greater than 0.7060. A line of initial Sr 87 /Sr 86 = 0.7060 is approximately coincident with the boundary between Paleozoic eugeosynclinal and miogeosynclinal rocks. Granitic rocks intruded into Paleozoic miogeosynclinal rocks have initial Sr 87 /Sr 86 greater than 0.7060, whereas those intruded into eugeosynclinal Paleozoic rocks have initial Sr 87 /Sr 86 less than 0.7060. The line of initial Sr 87 /Sr 86 = 0.7040 is the eastern limit of principal exposures of ultramafic rocks, the western limit of Cretaceous granitic rocks, and is coincident with an abrupt change in “topographic expression” on the Bouguer gravity map of California. Correlation of the isotopic variations with these major crustal features suggests that there has been a sharp lateral contrast in crust-mantle chemistry across the region of study that has been fixed in position from the Precambrian to the present time. The chemical and isotopic variations observed are best explained if the parent magmas of the majority of granitic rocks investigated were derived in a region that was laterally variable in composition and in a zone of melting that intersected both upper mantle and lower crust. However, some igneous rocks, such as Jurassic volcanic rocks in wall rocks and roof pendants and some granitic rocks with high strontium concentrations and low Rb-Sr ratios, suggest that deeper sources are also involved in the total spectrum of igneous rocks in the region.

California↗
USGS2017

Food abundance, prey morphology, and diet specialization influence individual sea otter tool use

Sea otters are well-known tool users, employing objects such as rocks or shells to break open invertebrate prey. We used a series of generalized linear mixed effect models to examine observational data on prey capture and tool use from 211 tagged individuals from 5 geographically defined study areas throughout the sea otter’s range in California. Our best supported model was able to explain 75% of the variation in the frequency of tool use by individual sea otters with only ecological and demographic variables. In one study area, where sea otter food resources were abundant, all individuals had similar diets focusing on preferred prey items and used tools at low to moderate frequencies (4–38% of prey captures). In the remaining areas, where sea otters were food-limited, individuals specialized on different subsets of the available prey and had a wider range of average tool-use frequency (0–98% of prey captures). The prevalence of difficult-to-access prey in individual diets was a major predictor of tool use and increased the likelihood of using tools on prey that were not difficult to access as well. Age, sex, and feeding habitat also contributed to the probability of tool use but to a smaller extent. We developed a conceptual model illustrating how food abundance, the prevalence of difficult-to-access prey, and individual diet specialization interacted to determine the likelihood that individual sea otters would use tools and considered the model’s relevance to other tool-using species.

Behavioral Ecology↗
USGS2009

U.S. Geological Survey (USGS) Western Region; Santa Barbara Channel Coastal and Ocean Science

USGS coastal and ocean science in the Western United States and the Pacific integrates scientific expertise in geology, water resources, biology, and geography. Operating from 10 major science centers in the Western Region, the USGS is addressing a broad geographic and thematic range of important coastal and marine issues. In California, the Santa Barbara Channel represents one area of focus.

Fact Sheet↗
USGS1992

A new subspecies of Chamaea fasciata (Wrentit) from Oregon (Aves: Timaliinae)

Geographic variation in plumage color of Chamaea fasciata (Wrentit) from northern California and southern Oregon is related to climate. A new subspecies, Chamaea fasciata margra , is described from a disjunct population of southern interior Oregon. Colonization of C. fasciata in interior Oregon was perhaps from birds crossing coniferous forests via isolated balds of Ceonothus . Recent increases of Wrentits in interior Oregon may be in response to habitat alterations (deforestation, fires) and concurrent global warming.

Oregon↗
USGS2001

Declines of the California red-legged frog: Climate, UV-B, habitat, and pesticides hypotheses

The federally threatened California red-legged frog ( Rana aurora draytonii ) has disappeared from much of its range for unknown reasons. We mapped 237 historic locations for the species and determined their current population status. Using a geographic information system (GIS), we determined latitude, elevation, and land use attributes for all sites and analyzed the spatial pattern of declines. We then compared the observed patterns of decline to those predicted by the climate change, UV-B radiation, pesticides, and habitat alteration hypotheses for amphibian decline. Declines were not consistent with the climate change hypothesis but showed a strong positive association with elevation, percentage upwind agricultural land use, and local urbanization. These results apply to patterns of decline across the entire range of R. a. draytonii in California, as well as within geographic subregions. The elevational gradient in declines is consistent with the UV-B hypothesis, although the UV-B hypothesis also predicts a north-to-south gradient in declines, which we did not observe. The association of declines with the amount of upwind agricultural land use strongly suggests that wind-borne agrochemicals may be an important factor in declines. This association was most pronounced within the Central Valley–Sierra region, where other studies have documented both transport and deposition of pesticides to the Sierra Nevada and the presence of pesticide residues in the bodies of congeneric ( Rana muscosa ) and more distantly related ( Hyla regilla ) frog species.

California↗
USGS2022

Using Landsat and MODIS satellite collections to examine extent, timing, and potential impacts of surface water inundation in California croplands☆

The state of California, United States of America produces many crop products that are both utilized domestically and exported throughout the world. With nearly 39,000 km 2 of croplands, monitoring unintentional and intentional surface water inundation is important for water resource management and flood hazard readiness. We examine inundation dynamics in California croplands from 2003 to 2020 by intersecting monthly surface water maps (n = 216 months) derived using two satellite remote sensing platforms (Landsat and Moderate Resolution Imaging Spectroradiometer [MODIS]) with a high-quality cropland map generated by the California Department of Water Resources. Surface water maps were produced using the Dynamic Surface Water Extent model, in which satellite image pixels are classified into different levels of detection confidence. Our analysis focused on calculating monthly and annual occurrence of “high confidence” water for each satellite collection across eight cropland types and 58 counties. Results indicate that 49.9% (MODIS) to 56.4% (Landsat) of croplands were inundated at least once during the 18-year timespan. Rice crops, due to their unique need of consistent surface water and dominance as a crop type in CA, had the highest proportion of and mean annual inundation area, while citrus crops had the lowest. Mean monthly inundation patterns in most croplands followed California's precipitation patterns with high inundation during the winter and spring rainy season. At the county level, croplands in the southern Central Valley typically had high occurrences of inundation in conjunction with large crop areas. Exposure and sensitivity of inundation for three crop types (citrus, deciduous, and vineyards) that are typically less associated with intentional inundation were geographically variable, but overall were generally highest in counties in the southern Central Valley, California's primary agricultural region. Flood and precipitation related crop insurance claims indicated that rice had the highest mean indemnity payout for any month with damages typically occurring in March and April. Insurance claims were also high in deciduous fruit and nut crops, which had peak damages in February. A comparison between inundation results and insurance claims suggests that the inundation mapped by our process coincides with claim activity. These data elucidate water inundation patterns across the state that can serve to inform farmers, insurers, decision makers, resource managers, and flood mitigation professionals.

California↗
USGS2001

Early post-fire succession in California chaparral: Changes in diversity, density, cover and biomass

For four consecutive years, following the fires in November 1993, temporal variations in species richness, cover and biomass of component plant groups in early post-fire chaparral succession were monitored on different aspects at the Stunt Ranch Santa Monica Mountains Reserve, southern California. Plant groups were categorized based on growth form, life form, ability to fix nitrogen, geographic origin and regeneration strategies. North-facing slopes exhibited higher species richness, higher species turnover rate over time and faster vegetation recovery in terms of biomass accumulation and return to pre-fire species composition. This was probably due to higher species richness and biomass of nitrogen-fixing species found on north-facing slopes in comparison to south-facing slopes. On both north- and south-facing slopes, annuals had the highest species turnover rate, followed by herbaceous perennials and shrubs. In the first four post-fire years, annual species were the largest floristic group, but herbaceous perennials and shrubs were the major contributors to community biomass. Nitrogen-fixing species and exotics contributed significantly to early post-fire community structure. Although the general trends in post-fire succession are clear in terms of temporal changes in the relative proportions of different plant groups, environmental variation and the nature of plant life histories of component species, especially dominant species, could alter such trends significantly.

Ecological Research↗
USGS2020

High-throughput sequencing reveals distinct regional genetic structure among remaining populations of an endangered salt marsh plant in California

Conservation of rare species requires careful consideration to both preserve locally adapted traits and maintain genetic diversity, as species’ ranges fluctuate in response to a changing climate and habitat loss. Salt marsh systems in California have been highly modified and many salt marsh obligate species have undergone range reductions and habitat loss with concomitant losses of genetic diversity and connectivity. Remaining salt marshes are threatened by rising sea levels, and so these habitats will likely require active restoration and re-establishment efforts. This study aims to provide a reference point for the current status of genetic diversity and range-wide population structure of a federally and state listed endangered plant, Salt Marsh Bird’s Beak (Chloropyron maritimum subsp. maritimum) that can inform future preservation and restoration efforts. We used historical data and current monitoring information to locate and sample all known occurrences throughout the species range in Southern California, and three additional occurrences from Baja California, Mexico. We used flow cytometry and single nucleotide polymorphic markers (SNPs), generated by double-digest restriction-site associated DNA sequencing (ddRAD), to assess relative ploidy, and estimate genetic diversity and population structure across the region. Overall, we found four to five distinct genetic clusters that coincide with geographic regions. Genetic diversity was greatest in the southern part of the range including Baja California and San Diego. These findings can bolster management and restoration efforts by identifying potentially isolated occurrences and areas that are rich sources of allelic diversity, and by providing insight into the amount of genetic differentiation across the species range.

California↗
USGS2017

Genetic differentiation and inferred dynamics of a hybrid zone between Northern Spotted Owls (Strix occidentalis caurina) and California Spotted Owls (S. o. occidentalis) in northern California

Genetic differentiation among Spotted Owl ( Strix occidentalis ) subspecies has been established in prior studies. These investigations also provided evidence for introgression and hybridization among taxa but were limited by a lack of samples from geographic regions where subspecies came into close contact. We analyzed new sets of samples from Northern Spotted Owls (NSO: S. o. caurina ) and California Spotted Owls (CSO: S. o. occidentalis ) in northern California using mitochondrial DNA sequences (mtDNA) and 10 nuclear microsatellite loci to obtain a clearer depiction of genetic differentiation and hybridization in the region. Our analyses revealed that a NSO population close to the northern edge of the CSO range in northern California (the NSO Contact Zone population) is highly differentiated relative to other NSO populations throughout the remainder of their range. Phylogenetic analyses identified a unique lineage of mtDNA in the NSO Contact Zone, and Bayesian clustering analyses of the microsatellite data identified the Contact Zone as a third distinct population that is differentiated from CSO and NSO found in the remainder of the subspecies' range. Hybridization between NSO and CSO was readily detected in the NSO Contact Zone, with over 50% of individuals showing evidence of hybrid ancestry. Hybridization was also identified among 14% of CSO samples, which were dispersed across the subspecies' range in the Sierra Nevada Mountains. The asymmetry of hybridization suggested that the hybrid zone may be dynamic and moving. Although evidence of hybridization existed, we identified no F1 generation hybrid individuals. We instead found evidence for F2 or backcrossed individuals among our samples. The absence of F1 hybrids may indicate that (1) our 10 microsatellites were unable to distinguish hybrid types, (2) primary interactions between subspecies are occurring elsewhere on the landscape, or (3) dispersal between the subspecies' ranges is reduced relative to historical levels, potentially as a consequence of recent regional fires.

California↗
USGS2006

Catastrophe, recovery and range limitation in NE Pacific kelp forests: a large-scale perspective

The 1997–98 El Niño was one of the strongest on record and resulted in widespread losses of the giant kelp Macrocystis pyrifera (Agardh) along the west coast of North America. Drawing on a rich history of studies that have shown abnormally large waves and warm nutrient-poor water associated with El Niños to negatively impact giant kelp populations at some locations in southern and Baja California, we examined (1) how these impacts scale up when considered across the species’ geographic range in the NE Pacific Ocean and (2) if these impacts are generalizable over broad spatial scales. Working at 56 sites in 14 study locations over a 3 yr period (1997 to 2000), we examined how giant kelp populations were impacted by and recovered following the 1997–98 El Niño over a ~1500 km span along the west coast of North America. Our results indicate that while nearly all giant kelp disappeared from the southern one-third of the species’ range along the coast of Baja California, Mexico, and heavy losses occurred throughout the central one-third of the species’ range in southern California, USA, only minor impacts were observed throughout the northern one-third of the species’ range in central California. Further, although highly variable among regions, these impacts were similar and generalizable among locations within each region. Our results also suggest that, as has been observed in local-scale studies, this large-scale variability in giant kelp mortality was driven by large-scale patterns in ocean temperature (nutrient concentration) and wave intensity. Recovery following El Niño, in contrast, was variable at multiple spatial scales and although not directly tested here, presumably influenced by numerous factors such as proximity to upwelling areas, competition with other algae, grazing, and propagule availability. Further, variability in the rates of recovery among locations resulted in a generally slow recovery of giant kelp throughout most of Baja California, and residual large-scale impacts of the El Niño were still evident 2 yr after the El Niño ended. As global climate change may lead to increases in the frequency and intensity of El Niños, our findings have broad implications for the ways in which ecosystems might be expected to respond to them and provide a measure by which their impacts to giant kelp ecosystems may be compared among events.

Pacific Ocean↗