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At least 163 records · Page 9Linked to original sources
USGS2006

Induction of antibody-producing cells in rainbow trout, Salmo gairdneri Richardson, by flush exposure

Splenic antibody-producing cells were produced by rainbow trout that had been exposed to O-antigens extracted from Yersinia ruckeri and Aeromonas salmonicida by adding the concentrated antigen preparation directly into the water of the tank holding the fish for a flush exposure. This method was compared with the proven techniques of exposure: intraperitoneal injection or a 2 minute immersion of the fish in the antigen preparation. Dosage experiments showed that the production of antibody-producing cells was induced by the immersion of trout for 2 minutes in water with 5.0 μg/ml-1 (or more) with the Y. ruckeri O-antigen, or 500 μg ml-1 (or more) of the A. salmonicida O-antigen. Similar differences were evident when the respective antigens were added directly to the water.

Journal of Fish Biology↗
USGS2008

Elevated CO 2 enhances biological contributions to elevation change in coastal wetlands by offsetting stressors associated with sea-level rise

1. Sea-level rise, one indirect consequence of increasing atmospheric CO 2 , poses a major challenge to long-term stability of coastal wetlands. An important question is whether direct effects of elevated CO 2 on the capacity of marsh plants to accrete organic material and to maintain surface elevations outweigh indirect negative effects of stressors associated with sea-level rise (salinity and flooding). 2. In this study, we used a mesocosm approach to examine potential direct and indirect effects of atmospheric CO 2 concentration, salinity and flooding on elevation change in a brackish marsh community dominated by a C 3 species, Schoenoplectus americanus, and a C 4 grass, Spartina patens. This experimental design permitted identification of mechanisms and their role in controlling elevation change, and the development of models that can be tested in the field. 3. To test hypotheses related to CO 2 and sea-level rise, we used conventional anova procedures in conjunction with structural equation modelling (SEM). SEM explained 78% of the variability in elevation change and showed the direct, positive effect of S. americanus production on elevation. The SEM indicated that C 3 plant response was influenced by interactive effects between CO 2 and salinity on plant growth, not a direct CO 2 fertilization effect. Elevated CO 2 ameliorated negative effects of salinity on S. americanus and enhanced biomass contribution to elevation. 4. The positive relationship between S. americanus production and elevation change can be explained by shoot-base expansion under elevated CO 2 conditions, which led to vertical soil displacement. While the response of this species may differ under other environmental conditions, shoot-base expansion and the general contribution of C 3 plant production to elevation change may be an important mechanism contributing to soil expansion and elevation gain in other coastal wetlands. 5. Synthesis. Our results revealed previously unrecognized interactions and mechanisms contributing to marsh elevation change, including amelioration of salt stress by elevated CO 2 and the importance of plant production and shoot-base expansion for elevation gain. Identification of biological processes contributing to elevation change is an important first step in developing comprehensive models that permit more accurate predictions of whether coastal marshes will persist with continued sea-level rise or become submerged. ?? 2008 The Authors.

Journal of Ecology↗
USGS2010

Paleoclimates: Understanding climate change past and present

The field of paleoclimatology relies on physical, chemical, and biological proxies of past climate changes that have been preserved in natural archives such as glacial ice, tree rings, sediments, corals, and speleothems. Paleoclimate archives obtained through field investigations, ocean sediment coring expeditions, ice sheet coring programs, and other projects allow scientists to reconstruct climate change over much of earth's history. When combined with computer model simulations, paleoclimatic reconstructions are used to test hypotheses about the causes of climatic change, such as greenhouse gases, solar variability, earth's orbital variations, and hydrological, oceanic, and tectonic processes. This book is a comprehensive, state-of-the art synthesis of paleoclimate research covering all geological timescales, emphasizing topics that shed light on modern trends in the earth's climate. Thomas M. Cronin discusses recent discoveries about past periods of global warmth, changes in atmospheric greenhouse gas concentrations, abrupt climate and sea-level change, natural temperature variability, and other topics directly relevant to controversies over the causes and impacts of climate change. This text is geared toward advanced undergraduate and graduate students and researchers in geology, geography, biology, glaciology, oceanography, atmospheric sciences, and climate modeling, fields that contribute to paleoclimatology. This volume can also serve as a reference for those requiring a general background on natural climate variability.

Book↗
USGS1990

Trace elements in Corbicula fluminea from the San Joaquin River, California

(i) Trace element concentrations in soft tissue of the benthic bivalve, Corbicula fluminea, from the San Joaquin River and its major tributaries were examined during the primary irrigation season in relation to the spatial variation in concentrations of major, minor and trace constituents in riverwater and sediments. (ii) Selenium concentrations in Corbicula from perennial flow reaches of the San Joaquin River and its major tributaries varied directly with the solute (??? 0.45 ??m) Se concentrations of riverwater. Elevated concentrations occurred in clams from sites with substantial discharge originating as subsurface drainage and irrigation return flows. Both tissue and solute Se concentrations declined from June through the end of the primary irrigation season. (iii) Arsenic concentrations in Corbicula from perennial flow reaches of the San Joaquin River varied directly with the HNO3-extractable (pH 2) As:Fe ratio of suspended matter, providing evidence that sorption to oxyhydroxide surfaces is an important control on the biological availability of As. However, Corbicula from several tributaries draining alluvium derived from the Sierra Nevada had lower As concentrations than would be predicted by the relation developed for perennial flow sites of the San Joaquin River. Arsenic concentrations in Corbicula from the Tuolumne and Merced Rivers and upstream reaches of the San Joaquin River were higher than in clams from the downstream perennial flow reaches of the San Joaquin River. Concentrations of As in clams from downstream perennial flow reaches of the San Joaquin River increased from June through the end of the primary irrigation season. (iv) Mercury concentrations in Corbicula were elevated in upstream reaches of the San Joaquin River, in the Merced and Tuolumne Rivers, and in tributaries draining the Coast Ranges. Mean Cd and Cu concentrations in Corbicula were elevated in the Merced and Tuolumne Rivers, Orestimba Creek and a perennial flow reach of the San Joaquin River which receives water directly from the Delta Mendota Canal. Concentrations of Ni in clams from the San Joaquin River decreased downstream of the Delta Mendota Pool. (v) Boron and Mo were not accumulated by Corbicula despite high solute concentrations (means as high as 2960 ??g B l-1 and 9 ??g Mo l-1) in riverwater during the primary irrigation season. This bivalve may not be an appropriate bioindicator of B and Mo enrichment. Concentrations of Cr, Pb, Ag, V and Zn in Corbicula exhibited little geographic variability in the drainage. (vi) Regression analysis revealed no clear evidence of synergistic or antagonistic interactions among As, Cd, Cu, Hg, Ni and Se in their uptake by Corbicula.

Conference Paper↗
USGS2014

Vaccination against bacterial kidney disease

Bacterial kidney disease (BKD) of salmonid fishes, caused by Renibacterium salmoninarum , has been recognized as a serious disease in salmonid fishes since the 1930s. This chapter discusses the occurrence and significance, etiology, and pathogenesis of BKD. It then describes the different vaccination procedures and the effects and side-effects of vaccination. Despite years of research, however, only a single vaccine has been licensed for prevention of BKD, and has demonstrated variable efficacy. Therefore, in addition to a presentation of the current status of BKD vaccination, a discussion of potential future directions for BKD vaccine development is included in the chapter. This discussion is focused on the unique characteristics of R. salmoninarum and its biology, as well as aspects of the salmonid immune system that might be explored specifically to develop more effective vaccines for BKD prevention.

Book chapter↗
USGS2016

A goodness-of-fit test for occupancy models with correlated within-season revisits

Occupancy modeling is important for exploring species distribution patterns and for conservation monitoring. Within this framework, explicit attention is given to species detection probabilities estimated from replicate surveys to sample units. A central assumption is that replicate surveys are independent Bernoulli trials, but this assumption becomes untenable when ecologists serially deploy remote cameras and acoustic recording devices over days and weeks to survey rare and elusive animals. Proposed solutions involve modifying the detection-level component of the model (e.g., first-order Markov covariate). Evaluating whether a model sufficiently accounts for correlation is imperative, but clear guidance for practitioners is lacking. Currently, an omnibus goodnessof- fit test using a chi-square discrepancy measure on unique detection histories is available for occupancy models (MacKenzie and Bailey, Journal of Agricultural, Biological, and Environmental Statistics, 9, 2004, 300; hereafter, MacKenzie– Bailey test). We propose a join count summary measure adapted from spatial statistics to directly assess correlation after fitting a model. We motivate our work with a dataset of multinight bat call recordings from a pilot study for the North American Bat Monitoring Program. We found in simulations that our join count test was more reliable than the MacKenzie–Bailey test for detecting inadequacy of a model that assumed independence, particularly when serial correlation was low to moderate. A model that included a Markov-structured detection-level covariate produced unbiased occupancy estimates except in the presence of strong serial correlation and a revisit design consisting only of temporal replicates. When applied to two common bat species, our approach illustrates that sophisticated models do not guarantee adequate fit to real data, underscoring the importance of model assessment. Our join count test provides a widely applicable goodness-of-fit test and specifically evaluates occupancy model lack of fit related to correlation among detections within a sample unit. Our diagnostic tool is available for practitioners that serially deploy survey equipment as a way to achieve cost savings.

Ecology and Evolution↗
USGS2025

Interspecific effects of invasive wild pigs (Sus scrofa) on native nine-banded armadillos (Dasypus novemcinctus)

Biological invasions pose significant risks to ecosystems and native species. Wild pigs ( Sus scrofa ) are a highly detrimental invasive species in North America, directly and indirectly affecting native species. Co-occurrence of wild pigs and native species may lead to interspecific interactions that alter ecological communities. Accordingly, we investigated spatial and temporal factors influencing detection and occupancy of Eurasian Wild Pig and Nine-banded Armadillo ( Dasypus novemcinctus ) before examining interspecific effects. We analyzed camera-trap data collected from August to September 2021 using a hierarchical modeling framework to estimate detection and occupancy of both species individually (single-species analyses) and concurrently (conditional co-occurrence analyses). We observed higher Wild Pig detection rates and space use in late summer and in areas with greater riparian cover, respectively. Armadillo detection increased linearly throughout our sampling season and in response to precipitation. Moreover, armadillo detection was 3.5 to 5.1× higher at sites used by wild pigs, regardless of whether wild pigs were detected during a survey period. Occupancy of armadillo was best explained by a quadratic trend in site elevation but did not depend on the presence of wild pigs. Our results indicate that wild pigs may influence armadillo detection (or site-use intensity), but not occupancy, therefore revealing nuanced interspecific interactions. Between species, we observed high overlap in diel activity but significantly different activity peaks, with armadillos being strictly nocturnal and wild pigs being crepuscular but with more cathemeral activity, suggesting that fine-scale temporal partitioning may have occurred. Our results provide insights into the influence of a large-bodied and destructive invasive species (Wild Pig) on a smaller, ecologically important native species (Nine-banded Armadillo).

Oklahoma↗
USGS2009

After the disaster: The hydrogeomorphic, ecological, and biological responses to the 1980 eruption of Mount St. Helens, Washington

The 1980 eruption of Mount St. Helens caused instantaneous landscape disturbance on a grand scale. On 18 May 1980, an ensemble of volcanic processes, including a debris avalanche, a directed pyroclastic density current, voluminous lahars, and widespread tephra fall, abruptly altered landscape hydrology and geomorphology, and created distinctive disturbance zones having varying impacts on regional biota. Response to the geological and ecological disturbances has been varied and complex. In general, eruption-induced alterations in landscape hydrology and geomorphology led to enhanced stormflow discharge and sediment transport. Although the hydrological response to landscape perturbation has diminished, enhanced sediment transport persists in some basins. In the nearly 30 years since the eruption, 350 million (metric) tons of suspended sediment has been delivered from the Toutle River watershed to the Cowlitz River (roughly 40 times the average annual preeruption suspended-sediment discharge of the Columbia River). Such prodigious sediment loading has wreaked considerable socioeconomic havoc, causing significant channel aggradation and loss of flood conveyance capacity. Significant and ongoing engineering efforts have been required to mitigate these problems. The overall biological evolution of the eruption-impacted landscape can be viewed in terms of a framework of survivor legacies. Despite appearances to the contrary, a surprising number of species survived the eruption, even in the most heavily devastated areas. With time, survivor “hotspots” have coalesced into larger patches, and have served as stepping stones for immigrant colonization. The importance of biological legacies will diminish with time, but the intertwined trajectories of geophysical and biological successions will influence the geological and biological responses to the 1980 eruption for decades to come.

Washington↗
USGS2005

Chemistry of runoff and shallow ground water at the Cattlemans Detention basin site, South Lake Tahoe, California, August 2000-November 2001

A study at the Cattlemans detention basin site began in November 2000. The site is adjacent to Cold Creek in South Lake Tahoe, California. The purpose of the study is to evaluate the effects of the detention basin on ground-water discharge and changes in nutrient loads to Cold Creek, a tributary to Trout Creek and Lake Tahoe. The study is being done in cooperation with the Tahoe Engineering Division of the El Dorado County Department of Transportation. This report summarizes data collected prior to and during construction of the detention basin and includes: (1) nutrient and total suspended solid concentrations of urban runoff; (2) distribution of unconsolidated deposits; (3) direction of ground-water flow; and (4) chemistry of shallow ground water and Cold Creek. Unconsolidated deposits in the area of the detention basin were categorized into three classes: fill material consisting of a red-brown loamy sand with some gravel and an occasional cobble that was placed on top of the meadow; meadow deposits consisting of gray silt and sand with stringers of coarse sand and fine gravel; and a deeper brown to yellow-brown sand and gravel with lenses of silt and sand. Prior to construction of the detention basin, ground water flowed west-northwest across the area of the detention basin toward Cold Creek. The direction of ground-water flow did not change during construction of the detention basin. Median concentrations of dissolved iron and chloride were 500 and 30 times higher, respectively, in ground water from the meadow deposits than dissolved concentrations in Cold Creek. Median concentration of sulfate in ground water from the meadow deposits was 0.4 milligrams per liter and dissolved oxygen was below the detection level of 0.3 milligrams per liter. The relatively high concentrations of iron and the lack of sulfate in the shallow ground water likely are caused by chemical reactions and biological microbial oxidation of organic matter in the unconsolidated deposits that result in little to no dissolved oxygen in the ground water. The higher chloride concentrations in ground water compared with Cold Creek likely are caused from the application of salt on Pioneer Trail and streets in Montgomery Estates subdivision during the winter. Runoff from these roads contributes to the recharge of the shallow ground water. The range of dissolved constituents generally was greater in the meadow deposits than in the deeper sand and gravel. Ammonia plus organic nitrogen were the dominant forms of dissolved nitrogen and concentrations ranged from 0.04 to 18 milligrams per liter as nitrogen. Highest concentration was beneath the middle of the detention basin. Nitrate plus nitrite concentrations were low (<0.33 milligrams per liter as nitrogen) throughout the area and dissolved phosphorus concentrations ranged from 0.001 to 0.34 milligrams per liter. Nitrogen and dissolved organic carbon showed no consistent pattern in the direction of ground-water flow, which suggests that, similar to iron and sulfate, local variations in the chemical and biological reactions within the meadow deposits controlled the variation in nitrogen concentrations. The gradual increase in dissolved phosphorus along the direction of ground-water flow suggest that phosphorus may be slowly dissolving into ground water. Dissolved phosphorus was consistently low in July, which may be the result of greater microbial activity in the unconsolidated deposits or from uptake by roots during the summer.

Scientific Investigations Report↗
USGS1981

Quality assurance practices for the chemical and biological analyses of water and fluvial sediments

This chapter contains practices used by the U.S. Geological Survey to assure the quality of analytical data for water, fluvial sediment, and aquatic organisms. These practices are directed primarily toward personnel making water-quality measurements. Some detail specific quality control techniques, others document quality assurance procedures being used by the Central Laboratories System of the U.S. Geological Survey, and still others describe various statistical techniques and give examples of their use in evaluating and assuring the quality of analytical data. The practices are arranged into eight sections: Analytical Methods Development Procedures Standard Quantitative Analysis Techniques Instrumental Techniques Reference Material Laboratory Quality Control Quality Assurance Monitoring Documentation, Summary, and Evaluation of Data Materials Evaluation Each section is preceded by a brief description of the material covered. Similarly within each section, each practice is preceded by a description of its application or scope.

Open-File Report↗
USGS1982

Quality assurance practices for the chemical and biological analyses of water and fluvial sediments

This chapter contains practices used by the U.S. Geological Survey to assure the quality of analytical data for water, fluvial sediment, and aquatic organisms. These practices are directed primarily toward personnel making water quality measurements. Some detail specific quality control techniques, others document quality assurance procedures being used by the Central Laboratories System of the U.S. Geological Survey, and still others describe various statistical techniques and give examples of their use in evaluating and assuring the quality of analytical data. The practices are arranged into eight sections: Analytical Methods Development Procedures, Standard Quantitative Analysis Techniques, Instrumental Techniques, Reference Material, Laboratory Quality Control; Quality Assurance Monitoring; Documentation, Summary, and Evaluation of Data, Materials Evaluation. Each section is preceded by a brief description of the material covered. Similarly within each section, each practice is preceded by a description of its application or scope.

Techniques of Water-Resources Investigations↗
USGS2004

Importance of storm events in controlling ecosystem structure and function in a Florida Gulf Coast estuary

From 8/95 to 2/01, we investigated the ecological effects of intra- and inter-annual variability in freshwater flow through Taylor Creek in southeastern Everglades National Park. Continuous monitoring and intensive sampling studies overlapped with an array of pulsed weather events that impacted physical, chemical, and biological attributes of this region. We quantified the effects of three events representing a range of characteristics (duration, amount of precipitation, storm intensity, wind direction) on the hydraulic connectivity, nutrient and sediment dynamics, and vegetation structure of the SE Everglades estuarine ecotone. These events included a strong winter storm in November 1996, Tropical Storm Harvey in September 1999, and Hurricane Irene in October 1999. Continuous hydrologic and daily water sample data were used to examine the effects of these events on the physical forcing and quality of water in Taylor Creek. A high resolution, flow-through sampling and mapping approach was used to characterize water quality in the adjacent bay. To understand the effects of these events on vegetation communities, we measured mangrove litter production and estimated seagrass cover in the bay at monthly intervals. We also quantified sediment deposition associated with Hurricane Irene's flood surge along the Buttonwood Ridge. These three events resulted in dramatic changes in surface water movement and chemistry in Taylor Creek and adjacent regions of Florida Bay as well as increased mangrove litterfall and flood surge scouring of seagrass beds. Up to 5 cm of bay-derived mud was deposited along the ridge adjacent to the creek in this single pulsed event. These short-term events can account for a substantial proportion of the annual flux of freshwater and materials between the mangrove zone and Florida Bay. Our findings shed light on the capacity of these storm events, especially when in succession, to have far reaching and long lasting effects on coastal ecosystems such as the estuarine ecotone of the SE Everglades.

Journal of Coastal Research↗
USGS2010

Projected climate impacts for the amphibians of the western hemisphere

Given their physiological requirements, limited dispersal abilities, and hydrologically sensitive habitats, amphibians are likely to be highly sensitive to future climatic changes. We used three approaches to map areas in the western hemisphere where amphibians are particularly likely to be affected by climate change. First, we used bioclimatic models to project potential climate-driven shifts in the distribution of 413 amphibian species based on 20 climate simulations for 2071&ndash;2100. We summarized these projections to produce estimates of species turnover. Second, we mapped the distribution of 1099 species with restricted geographic ranges. Finally, using the 20 future climate-change simulations, we mapped areas that were consistently projected to receive less seasonal precipitation in the coming century and thus were likely to have altered microclimates and local hydrologies. Species turnover was projected to be highest in the Andes Mountains and parts of Central America and Mexico, where, on average, turnover rates exceeded 60% under the lower of two emissions scenarios. Many of the restricted-range species not included in our range-shift analyses were concentrated in parts of the Andes and Central America and in Brazil's Atlantic Forest. Much of Central America, southwestern North America, and parts of South America were consistently projected to experience decreased precipitation by the end of the century. Combining the results of the three analyses highlighted several areas in which amphibians are likely to be significantly affected by climate change for multiple reasons. Portions of southern Central America were simultaneously projected to experience high species turnover, have many additional restricted-range species, and were consistently projected to receive less precipitation. Together, our three analyses form one potential assessment of the geographic vulnerability of amphibians to climate change and as such provide broad-scale guidance for directing conservation efforts.

Conservation Biology↗
USGS1980

Lateral trends and vertical sequences in estuarine sediments, Willapa Bay, Washington

Willapa Bay is a sizable estuary on the southern coast of Washington- Relatively unmodified in a geologic sense by human activity the bay provides an excellent example of modern depositional facies in an estuarine setting. Studies of these deposits indicate that consistent lateral trends exist in sediment texture and sedimentary structures. The texture changes from sandy at the mouth of the bay to muddy in its upper parts. In any part of the bay , sediment is coarsest in the channel bottoms, where lag deposits accumulate. The sediment tends to fine in an upslope direction and is finest in supratidal flat deposits of silt and clay. The nature of sedimentary structures depends on the combination of physical and biological processes and sediment textures. Bedforms exist wherever the bed is sandy. In the main tidal channels sandwaves and dunes up to 4 meters high occur. In tributary channels and at the margins of the main channel, at shallower depths and under less intense currents , the structures are generally less than a meter high. Current ripples occur in t he sandy bed of all of the tidal channels and in runoff channels cross the tidal flat. Symmetric long-crested ripples are produced by wave action over the sandy intertidal flat. Internal structures in the bay's sediment depend not only on the nature of the bedform but also on the rate of bioturbation relative to physical processes. Under fields of large sandwaves or dunes, medium- to large-scale tabular and trough crossbedding predominates. This crossbedding generally is unidirectional, reflecting the locally dominant current (ebb or flood). Ripple bedding predominates elsewhere in sandy sediment within the channels. Where sand transport is diminished, as on the floor of the upper tributary channels, bioturbation exceeds the rate of production of physical structures and bedding is destroyed. The depositional banks in such areas tend to be sites of rapid sediment accumulation and bedding in the form of interlayered sand (commonly ripple bedded) and mud persists. On intertidal flats the sediment accumulates slowly and bioturbation erases nearly all physical structures. Bedding is preserved only where deposition is locally rapid , as in topographic depressions or on the depositional banks of runoff channels, or where faunal activity is inhibited, as beneath mounds of blue-green algae. The rate of sedimentation is slower still on the supratidal flats, but the general paucity of faunal activity allows the preservation of thin alternations of fine sand , silt or clay. The lateral migration of the tidal channels produces vertical sequences in which topographically higher facies are superposed on one another. Near the mouth of the estuary the upward sequence: lag deposit — crossbedded sand — ripple or planar-bedded sand is typical. The crossbedding shows a general upward decrease in thickness and a progression from trough to tabular units. In the main tidal channel - in the central estuary and in sandy tributary channels, the typical vertical sequence resembles that near the mouth , with the exception that the sequence is capped by bioturbated sandy or muddy tide flat deposits. In the upper estuary , where muddy sediment predominates, a typical sequence shows the progression-. bioturbated lag deposit — gently dipping interlaminated sand and mud layers of the accretionary bank — bioturbated mud flat deposits — thinly laminated fine supratidal deposits.

Oregon, Washington↗
USGS1985

Temporal dynamics of estuarine phytoplankton: A case study of San Francisco Bay

Detailed surveys throughout San Francisco Bay over an annual cycle (1980) show that seasonal variations of phytoplankton biomass, community composition, and productivity can differ markedly among estuarine habitat types. For example, in the river-dominated northern reach (Suisun Bay) phytoplankton seasonality is characterized by a prolonged summer bloom of netplanktonic diatoms that results from the accumulation of suspended particulates at the convergence of nontidal currents (i.e. where residence time is long). Here turbidity is persistently high such that phytoplankton growth and productivity are severely limited by light availability, the phytoplankton population turns over slowly, and biological processes appear to be less important mechanisms of temporal change than physical processes associated with freshwater inflow and turbulent mixing. The South Bay, in contrast, is a lagoon-type estuary less directly coupled to the influence of river discharge. Residence time is long (months) in this estuary, turbidity is lower and estimated rates of population growth are high (up to 1-2 doublings d-1), but the rapid production of phytoplankton biomass is presumably balanced by grazing losses to benthic herbivores. Exceptions occur for brief intervals (days to weeks) during spring when the water column stratifies so that algae retained in the surface layer are uncoupled from benthic grazing, and phytoplankton blooms develop. The degree of stratification varies over the neap-spring tidal cycle, so the South Bay represents an estuary where (1) biological processes (growth, grazing) and a physical process (vertical mixing) interact to cause temporal variability of phytoplankton biomass, and (2) temporal variability is highly dynamic because of the short-term variability of tides. Other mechanisms of temporal variability in estuarine phytoplankton include: zooplankton grazing, exchanges of microalgae between the sediment and water column, and horizontal dispersion which transports phytoplankton from regions of high productivity (shallows) to regions of low productivity (deep channels). Multi-year records of phytoplankton biomass show that large deviations from the typical annual cycles observed in 1980 can occur, and that interannual variability is driven by variability of annual precipitation and river discharge. Here, too, the nature of this variability differs among estuary types. Blooms occur only in the northern reach when river discharge falls within a narrow range, and the summer biomass increase was absent during years of extreme drought (1977) or years of exceptionally high discharge (1982). In South Bay, however, there is a direct relationship between phytoplankton biomass and river discharge. As discharge increases so does the buoyancy input required for density stratification, and wet years are characterized by persistent and intense spring blooms. ?? 1985 Dr W. Junk Publishers.

Hydrobiologia↗
USGS2024

Final report to the Gulf Coast Joint Venture: Black Skimmer and Gull-billed Tern

Many bird species are of conservation concern across the Northern Gulf of Mexico from stressors such as human disturbance, predation, and habitat loss due to directional environmental change (e.g., increased sea-level rise and storm frequency and intensity, human infrastructure, changes in land use). Consequently, managers need decision-support tools that can help to answer important conservation questions for different species (e.g., which areas and how much area should be targeted by management actions to meet a particular species’ needs). The Black Skimmer ( Rynchops niger ; hereafter Skimmer) and Gull-billed Tern ( Gelochelidon nilotica ; hereafter Tern) are designated as U.S. Fish and Wildlife Service (USFWS) Species of Conservation Concern and Gulf Coast Joint Venture (GCJV) Priority Species with nesting habitats in the USFWS Gulf Coast Biological Planning Units (BPU; Tirpak et al. 2017). They are also representative of a variety of other beach and barrier-island nesting birds whose Gulf Coast nesting habitats are threatened by directional environmental change. The Skimmer has breeding pair targets in six GCJV Initiative Areas (IA), and the Tern has breeding pair targets in five GCJV IAs. Our goal was to inform GCJV management scenarios that efficiently and simultaneously achieve both species’ targets by prioritizing sites where management actions (e.g., maintain existing habitat or change habitat, geomorphology [landmass area, landmass elevation], predator management, human and dog restrictions) could be implemented.

Final Report↗
USGS2021

Examining historical mercury sources in the Saint Louis River estuary: How legacy contamination influences biological mercury levels in Great Lakes coastal regions

Industrial chemical contamination within coastal regions of the Great Lakes can pose serious risks to wetland habitat and offshore fisheries, often resulting in fish consumption advisories that directly affect human and wildlife health. Mercury (Hg) is a contaminant of concern in many of these highly urbanized and industrialized coastal regions, one of which is the Saint Louis River estuary (SLRE), the second largest tributary to Lake Superior. The SLRE has legacy Hg contamination that drives high Hg concentrations within sediments, but it is unclear whether legacy-derived Hg actively cycles within the food web. To understand the relative contributions of legacy versus contemporary Hg sources in coastal zones, Hg, carbon, and nitrogen stable isotope ratios were measured in sediments and food webs of SLRE and the Bad River, an estuarine reference site. Hg stable isotope values revealed that legacy contamination of Hg was widespread and heterogeneously distributed in sediments of SLRE, even in areas lacking industrial Hg sources. Similar isotope values were found in benthic invertebrates, riparian spiders, and prey fish from SLRE, confirming legacy Hg reaches the SLRE food web. Direct comparison of prey fish from SLRE and the Bad River confirmed that Hg isotope differences between the sites were not attributable to fractionation associated with rapid Hg bioaccumulation at estuarine mouths, but due to the presence of industrial Hg within SLRE. The Hg stable isotope values of game fish in both estuaries were dependent on fish migration and diet within the estuaries and extending into Lake Superior. These results indicate that Hg from legacy contamination is actively cycling within the SLRE food web and, through migration, this Hg also extends into Lake Superior via game fish. Understanding sources and the movement of Hg within the estuarine food web better informs restoration strategies for other impaired Great Lakes coastal zones.

Minnesota, Wisconsin↗
USGS2016

Plant community resistance to invasion by Bromus species: The roles of community attributes, Bromus interactions with plant communities, and Bromus traits

The factors that determine plant community resistance to exotic annual Bromus species ( Bromus hereafter) are diverse and context specific. They are influenced by the environmental characteristics and attributes of the community, the traits of Bromus species, and the direct and indirect interactions of Bromus with the plant community. Environmental factors, in particular ambient and soil temperatures, have significant effects on the ability of Bromus to establish and spread. Seasonality of precipitation relative to temperature influences plant community resistance to Bromus through effects on soil water storage, timing of water and nutrient availability, and dominant plant life forms. Differences among plant communities in how well soil resource use by the plant community matches resource supply rates can influence the magnitude of resource fluctuations due to either climate or disturbance and thus the opportunities for invasion. The spatial and temporal patterns of resource availability and acquisition of growth resources by Bromus versus native species strongly influence resistance to invasion. Traits of Bromus that confer a “priority advantage” for resource use in many communities include early-season germination and high growth and reproductive rates. Resistance to Bromus can be overwhelmed by high propagule supply, low innate seed dormancy, and large, if short-lived, seed banks. Biological crusts can inhibit germination and establishment of invasive annual plants, including several annual Bromus species, but are effective only in the absence of disturbance. Herbivores can have negative direct effects on Bromus , but positive indirect effects through decreases in competitors. Management strategies can be improved through increased understanding of community resistance to exotic annual Bromus species.

Book chapter↗