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USGS2018

Climate variability and vadose zone controls on damping of transient recharge

Increasing demand on groundwater resources motivates understanding of the controls on recharge dynamics so model predictions under current and future climate may improve. Here we address questions about the nonlinear behavior of flux variability in the vadose zone that may explain previously reported teleconnections between global-scale climate variability and fluctuations in groundwater levels. We use hundreds of HYDRUS-1D simulations in a sensitivity analysis approach to evaluate the damping depth of transient recharge over a range of periodic boundary conditions and vadose zone geometries and hydraulic parameters that are representative of aquifer systems of the conterminous United States (U.S). Although the models were parameterized based on U.S. aquifers, findings from this study are applicable elsewhere that have mean recharge rates between 3.65 and 730 mm yr –1 . We find that mean infiltration flux, period of time varying infiltration, and hydraulic conductivity are statistically significant predictors of damping depth. The resulting framework explains why some periodic infiltration fluxes associated with climate variability dampen with depth in the vadose zone, resulting in steady-state recharge, while other periodic surface fluxes do not dampen with depth, resulting in transient recharge. We find that transient recharge in response to the climate variability patterns could be detected at the depths of water levels in most U.S. aquifers. Our findings indicate that the damping behavior of transient infiltration fluxes is linear across soil layers for a range of texture combinations. The implications are that relatively simple, homogeneous models of the vadose zone may provide reasonable estimates of the damping depth of climate-varying transient recharge in some complex, layered vadose zone profiles.

Journal of Hydrology↗

USGS2012

Reducing Vulnerability of Ports and Harbors to Earthquake and Tsunami Hazards

Recent scientific research suggests the Pacific Northwest could experience catastrophic earthquakes in the near future, both from distant and local sources, posing a significant threat to coastal communities. Damage could result from numerous earthquake-related hazards, such as severe ground shaking, soil liquefaction, landslides, land subsidence/uplift, and tsunami inundation. Because of their geographic location, ports and harbors are especially vulnerable to these hazards. Ports and harbors, however, are important components of many coastal communities, supporting numerous activities critical to the local and regional economy and possibly serving as vital post-event, response-recovery transportation links. A collaborative, multi-year initiative is underway to increase the resiliency of Pacific Northwest ports and harbors to earthquake and tsunami hazards, involving Oregon Sea Grant (OSG), Washington Sea Grant (WSG), the National Oceanic and Atmospheric Administration Coastal Services Center (CSC), and the U.S. Geological Survey Center for Science Policy (CSP). Specific products of this research, planning, and outreach initiative include a regional stakeholder issues and needs assessment, a community-based mitigation planning process, a Geographic Information System (GIS) — based vulnerability assessment methodology, an educational web-site and a regional data archive. This paper summarizes these efforts, including results of two pilot port-harbor community projects, one in Yaquina Bay, Oregon and the other in Sinclair Inlet, Washington. Finally, plans are outlined for outreach to other port and harbor communities in the Pacific Northwest and beyond, using "getting started" workshops and a web-based tutorial.

Oregon, Washington↗

USGS2021

Using high resolution satellite and telemetry data to track flooded habitats, their use by waterfowl, and evaluate effects of drought on waterfowl and shorebird bioenergetics in California

Wetland managers in the Central Valley of California, a dynamic hydrological landscape, require information regarding the amount and location of existing wetland habitat to make decisions on how to best use water resources to support multiple wildlife objectives, particularly during drought. Scientists from the U.S. Geological Survey Western Ecological Research Center (WERC), Point Blue Conservation Science (Point Blue), and the U.S. Fish and Wildlife Service (USFWS) partnered to learn how wetland and flooded agricultural habitats used by waterfowl and shorebirds change during the non-breeding season (July–April) particularly during drought. During extreme drought conditions, the ability to provide sufficient water for wildlife often depends on the timing of water deliveries to managed wetlands and winter-flooded crop fields and decisions on whether to fallow croplands. Waterfowl and shorebirds could be particularly affected by these decisions because they typically rest and feed in flooded habitats. Poor habitat conditions resulting from spatially or temporally suboptimal water deliveries (that is, mismatch between waterfowl habitat needs and timing and location of flooded habitats) could reduce waterfowl hunting opportunities and body condition. Point Blue scientists developed a system for near real-time tracking of habitats used by waterfowl, shorebirds, and some other wetland-dependent “waterbirds” ( www.pointblue.org/watertracker ) and to assess the impacts of drought on habitat availability and on waterfowl and shorebird bioenergetics. The WERC researchers linked these data with near real-time tracking (telemetry) data of duck locations throughout the Valley. The team used these two datasets to relate duck locations to open-water characteristics and to learn how waterfowl use habitats under spatially and temporally changing conditions during drought and non-drought periods. We found that recent extreme drought (2013–15) significantly changed the timing and magnitude of flooding and consequently reduced the availability of habitats used by waterfowl and shorebirds more than other recent historic droughts 2000–11. Drought reduced irrigations of moist soil seed plants and thus there was lower food energy available for waterfowl. Analyses using bioenergetics models indicated that, overall, extreme drought increased food energy deficits (total number of deficit days) for shorebirds and waterfowl. Our analysis indicated a strong direct relationship between duck locations and classified habitat derived from open-water data during the wintering period (October–March). This result helps confirm the application of dynamic water data to identify flooded areas that provide waterfowl habitat. Presence of open water at a 1-hectare resolution can be used effectively to identify flooded landscape areas available as habitat for ducks. Our discoveries from evaluating use of space by ducks also indicated that nighttime feeding locations of ducks were concentrated nearby primary roosts and that foraging distances could depend on hydrologic dynamics of location (Suisun Marsh versus California excluding Suisun Marsh) and time of season (early, middle, late). Other results indicated that some areas on the California landscape with extremely reliable water supplies could receive consistent use by ducks year after year (in essence, almost drought proof). The Water Tracker is set up to automatically track wetland habitat and food availability each year and is making these data available to water and wetland managers. Results from this research are a significant step toward understanding how waterfowl and shorebird habitats can be optimally managed on the landscape to support desired populations of these migratory birds during extreme drought.

California↗

USGS2004

Surface-Water, Water-Quality, and Ground-Water Assessment of the Municipio of Mayaguez, Puerto Rico, 1999-2002

The surface-water assessment portion of this study focused on analysis of low-flow characteristics in local streams and rivers, because the supply of safe drinking water was a critical issue during recent dry periods. Low-flow characteristics were evaluated at one continuous-record gaging station based on graphical curve-fitting techniques and log-Pearson Type III frequency curves. Estimates of low-flow characteristics for 20 partial-record stations were generated using graphical-correlation techniques. Flow-duration characteristics for the continuous- and partial-record stations were estimated using the relation curves developed for the low-flow study. Stream low-flow statistics document the general hydrology under current land use, water-use, and climatic conditions. A survey of streams and rivers utilized 37 sampling stations to evaluate the sanitary quality of about 165 miles of stream channels. River and stream samples for fecal coliform and fecal streptococcus analyses were collected on two occasions at base-flow conditions. Bacteriological analyses indicate that a significant portion of the stream reaches within the municipio of Mayaguez may have fecal coliform bacteria concentrations above the water-quality goal (standard) established by the Puerto Rico Environmental Quality Board (Junta de Calidad Ambiental de Puerto Rico) for inland surface waters. Sources of fecal contamination may include: illegal discharge of sewage to storm-water drains, malfunctioning sanitary sewer ejectors, clogged and leaking sewage pipes, septic tank leakage, unfenced livestock, and runoff from livestock pens. Long-term fecal coliform data from five sampling stations located within or in the vicinity of the municipio of Mayaguez have been in compliance with the water-quality goal for fecal coliform concentration established in July 1990. Geologic, topographic, soil, hydrogeologic, and streamflow data were compiled into a database and used to divide the municipio of Mayaguez into five hydrogeologic terranes. This integrated database then was used to evaluate the ground-water potential of each hydrogeologic terrane. Lineament-trace analysis was used to help assess the ground-water development potential in the hydrogeologic terranes containing igneous rocks. Analyses suggest that areas with slopes greater than 15 degrees have relatively low ground-water development potential. The presence of fractures, independent of the topographic slope, may locally enhance the water-bearing properties in the hydrogeologic terranes containing igneous rocks. The results of this study indicate that induced streamflow generally is needed to sustain low to moderate ground-water withdrawal rates in the five hydrogeologic terranes. The ground-water flow systems in the hydrogeologic terranes are only able to sustain small withdrawal rates that rarely exceed 50 gallons per minute. Areas with a high density of fractures, as could be the case at the intersection of lineament traces in the upper parts of the Rio Ca?as and Rio Yaguez watersheds, are worthy of exploratory drilling for ground-water development.

Water-Resources Investigations Report↗

USGS1996

Acetochlor in the hydrologic system in the midwestern United States, 1994

The herbicide acetochlor [2-chloro- N -(ethoxymethyl)- N -(2-ethyl-6-methylphenyl)acetamide] was given conditional registration in the United States by the U.S. Environmental Protection Agency in March 1994. This registration provided a rare opportunity to investigate the occurrence of a pesticide during its first season of extensive use in the midwestern United States. Water samples collected and analyzed by the U.S. Geological Survey during 1994 documented the distribution of acetochlor in the hydrologic system; it was detected in 29% of the rain samples from four sites in Iowa, 17% of the stream samples from 51 sites across nine states, and 0% of the groundwater samples from 38 wells across eight states. Acetochlor exhibited concentration increases in rain and streams following its application to corn in the midwestern United States, with 75% of the rainwater and 35% of the stream samples having acetochlor detected during this time period. Acetochlor concentrations in rain decreased as the growing season progressed. Based on the limited data collected for this study, it is anticipated that acetochlor concentrations will have a seasonal pattern in rain and streams similar to those of other acetanilide herbicides examined. Possible explanations for the absence of acetochlor in groundwater for this study include the rapid degradation of acetochlor in the soil zone, insufficient time for this first extensive use of acetochlor to have reached the aquifers sampled, and the possible lack of acetochlor use in the recharge areas for the wells examined.

Environmental Science & Technology↗

USGS2018

Pleistocene glaciation of the Jackson Hole area, Wyoming

Pleistocene glaciations and late Cenozoic offset on the Teton fault have played central roles in shaping the scenic landscapes of the Teton Range and Jackson Hole area in Wyoming. The Teton Range harbored a system of mountain-valley glaciers that produced the striking geomorphic features in these mountains. However, the comparatively much larger southern sector of the Greater Yellowstone glacial system (GYGS) is responsible for creating the more expansive glacial landforms and deposits that dominate Jackson Hole. The glacial history is also inextricably associated with the Yellowstone hotspot, which caused two conditions that have fostered extensive glaciation: (1) uplift and consequent cold temperatures in greater Yellowstone; and (2) the lowland track of the hotspot (eastern Snake River Plain) that funneled moisture to the Yellowstone Plateau and the Yellowstone Crescent of High Terrain (YCHT). The penultimate (Bull Lake) glaciation filled all of Jackson Hole with glacial ice. Granitic boulders on moraines beyond the south end of Jackson Hole have cosmogenic 10Be exposure ages of ~150 thousand years ago (ka) and correlate with Marine Isotope Stage 6. A thick loess mantle subdues the topography of Bull Lake moraines and caps Bull Lake outwash terraces with a reddish buried soil near the base of the loess having a Bk horizon that extends down into the outwash gravel. The Bull Lake glaciation of Jackson Hole extended 48 kilometers (km) farther south than the Pinedale, representing the largest separation of these two glacial positions in the Western United States. The Bull Lake is also more extensive than the Pinedale on the west (22 km) and southwest (23 km) margins of the GYGS but not on the north and east. This pattern is explained by uplift and subsidence on the leading and trailing “bow-wave” of the YCHT, respectively. During the last (Pinedale) glaciation, mountain-valley glaciers of the Teton Range extended to the western edge of Jackson Hole and built bouldery moraines that commonly enclose lakes. On the southern margin of the GYGS, prominent glacial outwash terraces define three phases of the Pinedale glaciation in Jackson Hole: Pinedale-1 (Pd-1) by Antelope Flats with subdued channel patterns on the east side of Jackson Hole; Pinedale-2 (Pd-2) by a large outwash fan that includes Baseline Flat on the west side of Jackson Hole with well-defined channel patterns; and Pinedale-3 (Pd-3) by The Potholes and other outwash fans farther up the Snake River in central Jackson Hole. During Pinedale glaciation, three glacial lobes of the GYGS fed into Jackson Hole, and the relative importance of these lobes changed dramatically through time. During the Pd-1 glaciation, the eastern Buffalo Fork lobe dominated whereas in Pd-2 and Pd-3 time the northern Snake River lobe dominated. This is consistent with migration of the GYGS center of ice mass westward and southward as glaciers built up towards the moisture source provided by storms moving northeastward up the eastern Snake River Plain. The recession of the eastern Buffalo Fork lobe in Pd-2 and Pd-3 times is consistent with an enlarged ice mass on the Yellowstone Plateau that placed the eastern part of the GYGS in a precipitation or snow shadow. In Pd-1 time, the Buffalo Fork lobe reached its maximum extent and was joined by the Pacific Creek lobe. This culmination may correlate with the ~21–18 ka ages of moraines in the Teton Range and nearby ranges. Three subdivisions of Pd-1 glaciation built moraines that are nearly or entirely covered by outwash almost 100 meters thick. In Pd-2 time, the Snake River lobe joined with the Pacific Creek lobe and built a large outwash fan south of the present-day Jackson Lake. Boulders on a moraine at the head of this fan are dated to 15.5 ± 0.5 ka. The relation between Teton glaciers and those of the GYGS is indicated by outwash from these Pd-2 moraines that partly buries outer Jenny Lake moraines dated to 15.2 ± 0.7 ka. East of the large outwash fan, Pd-2 ice advanced across the glacial-age Triangle X-2 lake sediments, perhaps in a surge. The Buffalo Fork lobe retreated more than 20 km up valley from its Pd-1 position and Pd-2 ice of the Snake River and Pacific Creek lobes advanced into the area previously occupied by the Buffalo Fork lobe. The Pd-3 position flanks the margin of Jackson Lake and represents a retreat to a stable position after the Pd-2 7-km advance that may have been a surge across the Triangle X-2 lake sediments. The Potholes and South Landing outwash fans were built in the area deglaciated by the retreat from Pd-2 to Pd-3 time. The Spalding Bay outwash fan continued to incise and a meltwater stream flowed just outside the Teton glacier that filled the present Jenny Lake and deposited the 14.4 ± 0.8 ka inner Jenny Lake moraines. Glacial outwash terraces increase in slope toward their respective moraines of the GYGS and are complex in both north-south and east-west directions. The Pd-1 terrace slopes to the west where it is buried by the Pd-2 outwash. The post-depositional tilting of the Pd-1 outwash terrace is an order of magnitude smaller than the original westward depositional slope. The Pd-1, 2, and 3 terraces have a shingle-like geometry such that the highest terrace decreases in age down valley, and in southern Jackson Hole, the Pd-3 terrace is only 3–5 m above the Snake River. In Pd-1 time the combined Buffalo Fork and Pacific Creek lobes scoured out four basins: (1) Emma Matilda Lake; (2) Two Ocean Lake; (3) a deep basin from lower Pacific Creek to beneath the Oxbows and Jackson Lake Dam; and (4) the largest basin from the lower Buffalo Fork to Deadmans Bar of the Snake River. These basins are largely filled with fine-grained sediment and are now marked by moist lowlands or lakes. In Pd-2 and Pd-3 time the Snake River lobe scoured the present 120-m deep Jackson Lake and possibly the 120-m deeper sediment-filled basin. Subglacial erosion of the Jackson Lake basin by confined water jets is supported by eskers that climb up to the head of the South Landing outwash fan.

Wyoming↗

USGS2019

Climate, snow, and soil moisture data set for the Tuolumne and Merced river watersheds, California, USA

We present hourly climate data to force land surface process models and assessments over the Merced and Tuolumne watersheds in the Sierra Nevada, California, for the water year 2010–2014 period. Climate data (38 stations) include temperature and humidity (23), precipitation (13), solar radiation (8), and wind speed and direction (8), spanning an elevation range of 333 to 2987 m. Each data set contains raw data as obtained from the source (Level 0), data that are serially continuous with noise and nonphysical points removed (Level 1), and, where possible, data that are gap filled using linear interpolation or regression with a nearby station record (Level 2). All stations chosen for this data set were known or documented to be regularly maintained and components checked and calibrated during the period. Additional time-series data included are available snow water equivalent records from automated stations (8) and manual snow courses (22), as well as distributed snow depth and co-located soil moisture measurements (2–6) from four locations spanning the rain–snow transition zone in the center of the domain. Spatial data layers pertinent to snowpack modeling in this data set are basin polygons and 100 m resolution rasters of elevation, vegetation type, forest canopy cover, tree height, transmissivity, and extinction coefficient. All data are available from online data repositories ( https://doi.org/10.6071/M3FH3D ).

California↗

USGS2015

Quantitative attribution of major driving forces on soil organic carbon dynamics

Soil organic carbon (SOC) storage plays a major role in the global carbon cycle and is affected by many factors including land use/management changes (e.g., biofuel production-oriented changes). However, the contributions of various factors to SOC changes are not well understood and quantified. This study was designed to investigate the impacts of changing farming practices, initial SOC levels, and biological enhancement of grain production on SOC dynamics and to attribute the relative contributions of major driving forces (CO 2 enrichment and farming practices) using a fractional factorial modeling design. The case study at a crop site in Iowa in the United States demonstrated that the traditional corn-soybean (CS) rotation could still accumulate SOC over this century (from 4.2 to 6.8 kg C/m 2 ) under the current condition; whereas the continuous-corn (CC) system might have a higher SOC sequestration potential than CS. In either case, however, residue removal could reduce the sink potential substantially. Long-term simulation results also suggested that the equilibrium SOC level may vary greatly (∼5.7 to ∼11 kg C/m 2 ) depending on cropping systems and management practices, and projected growth enhancement could make the magnitudes higher (∼7.8 to ∼13 kg C/m 2 ). Importantly, the factorial design analysis indicated that residue management had the most significant impact (contributing 49.4%) on SOC changes, followed by CO 2 Enrichment (37%), Tillage (6.2%), the combination of CO 2 Enrichment-Residue removal (5.8%), and Fertilization (1.6%). In brief, this study is valuable for understanding the major forces driving SOC dynamics of agroecosystems and informative for decision-makers when seeking the enhancement of SOC sequestration potential and sustainability of biofuel production, especially in the Corn Belt region of the United States.

Journal of Advances in Modeling Earth Systems↗

USGS2011

Ant-nest ichnofossils in honeycomb calcretes, Neogene Ogallala Formation, High Plains region of western Kansas, U.S.A.

Two new ant-nest trace fossils are described from calcic sandy paleosols of the Neogene Ogallala Formation in western Kansas. The ichnofossils are preserved within and below calcrete beds weathering in positive relief as carbonate-filled casts or as cavities in negative relief. Daimoniobarax ichnogenus nov. is established for burrow systems composed of vertically tiered, horizontally oriented pancake-shaped chambers connected by predominantly vertical and cylindrical shafts ~ 0.8 cm in diameter. Ichnospecies of Daimoniobarax are differentiated based on differences in the plan view outline of chambers, shaft orientation, and junctions between chambers and shafts. Daimoniobarax nephroides ichnospecies nov. is composed of an ~ 24–76 cm long vertical sequence of distinctly lobed chambers (~ 2–20 cm wide and ~ 1 cm high) arranged along sinuous to helical shafts. Chamber shape in plan view ranges from small teardrops to larger kidney- and U-shaped forms. Shafts intersect at chamber edges such that chambers appear to bud from the central shafts. Daimoniobarax nephroides is most similar to the nests of extant seed-harvester ants of the New World genus Pogonomyrmex . Such ants are specialized granivores and prefer sandy soils in arid to semi-arid grassland and desert regions. Daimoniobarax tschinkeli ichnospecies nov. is ~ 30–80 cm in vertical extent. Chambers (~ 2–30 cm wide and ~ 1 cm high) are circular to elongate or pseudopodial in plan view. Vertical shafts are straight to slightly sinuous and intersect most often toward the center of the chambers. The generalized architecture of D. tschinkeli is similar to that of the nests or nest portions of several extant ant genera, though it does not closely resemble any known modern nest. Ant ichnofossils provide valuable information on hidden biodiversity, paleohydrologic regimes, paleopedogenic processes, and paleoclimate during the time of nest occupation. Depth-related changes in chamber size and vertical spacing may also help interpret paleosurfaces and paleodepths, and serve as geopetal features.

Kansas↗

USGS2014

Water movement through the unsaturated zone of the High Plains Aquifer in the Central Platte Natural Resources District, Nebraska, 2008-12

Uncertainty about the effects of land use and climate on water movement in the unsaturated zone and on groundwater recharge rates can lead to uncertainty in water budgets used for groundwater-flow models. To better understand these effects, a cooperative study between the U.S. Geological Survey and the Central Platte Natural Resources District was initiated in 2007 to determine field-based estimates of recharge rates in selected land-use areas of the Central Platte Natural Resources District in Nebraska. Measured total water potential and unsaturated-zone profiles of tritium, chloride, nitrate as nitrogen, and bromide, along with groundwater-age dates, were used to evaluate water movement in the unsaturated zone and groundwater recharge rates in the central Platte River study area. Eight study sites represented an east-west precipitation contrast across the study area—four beneath groundwater-irrigated cropland (sites 2, 5, and 6 were irrigated corn and site 7 was irrigated alfalfa/corn rotation), three beneath rangeland (sites 1, 4, and 8), and one beneath nonirrigated cropland, or dryland (site 3). Measurements of transient vertical gradients in total water potential indicated that periodic wetting fronts reached greater mean maximum depths beneath the irrigated sites than beneath the rangeland sites, in part, because of the presence of greater and constant antecedent moisture. Beneath the rangeland sites, greater temporal variation in antecedent moisture and total water potential existed and was, in part, likely a result of local precipitation and evapotranspiration. Moreover, greater variability was noticed in the total water potential profiles beneath the western sites than the corresponding eastern sites, which was attributed to less mean annual precipitation in the west. The depth of the peak post-bomb tritium concentration or the interface between the pre-bomb/post-bomb tritium, along with a tritium mass balance, within sampled soil profiles were used to estimate water fluxes in the unsaturated zone at three of the eight study sites: site 2 (irrigated), site 3 (dryland), and site 8 (rangeland). Estimates for recharge were about 68 millimeters per year [(mm/yr), post-bomb peak], 133 to 159 mm/yr (tritium interface), and 137 mm/yr (mass balance) at site 2 (irrigated); about 63 mm/yr (tritium interface) and 12 mm/yr (mass balance) at site 3 (dryland); and about 53 mm/yr (tritium interface) and 10 mm/yr (mass balance) at site 8 (rangeland). Recharge values from the mass balance at site 2 were more than an order of magnitude greater than recharge values at site 3, suggesting irrigation is an important control on water movement through the unsaturated zone. For the remaining five sites, the post-bomb tritium had flushed through the system and recharge was considered modern (within 10 years of sampling). The chloride mass-balance method was used to determine water fluxes below the root zone (less than 2 meters below land surface) at the rangeland sites: sites 1, 4, and 8. At these rangeland sites, water fluxes ranged from 1.8 to 96 mm/yr at site 1, 1.1 to 9.6 mm/yr at site 4, and 1.1 to 68 mm/yr at site 8, with mean rates of 21, 4.3, and 13 mm/yr, respectively. Site 1 had a greater mean water flux, which was consistent with the greater precipitation in the east than at site 8 in the west. Chloride mass balance was not calculated at the irrigated and dryland sites because of uncertainty about additional sources of chloride. Concentrations of nitrate as nitrogen in pore water in the unsaturated zone were larger beneath the irrigated and dryland (agricultural) sites compared with the rangeland sites. The larger concentrations at the agricultural sites are consistent with the application of nitrogen fertilizer at the agricultural sites and no substantial accumulation at the rangeland sites. The shape of the nitrate as nitrogen and chloride concentration profiles at site 1 (rangeland) indicate a reasonably larger and more consistent water flux in the UZ than beneath the other two rangeland sites (sites 4 or 8). Excluding site 7, the general shape of the nitrate as nitrogen profiles was similar beneath the agricultural sites and supports the estimates of water movement and recharge rates determined from the tritium and chloride methods. Movement of bromide through the unsaturated zone indicated greater water fluxes are found beneath irrigated lands than beneath rangeland. Bromide profiles in the unsaturated zone, determined from center of mass and peak displacement methods, document water fluxes ranged from 58 to 394 mm/yr beneath irrigated sites and 9 to 201 mm/yr beneath rangeland sites. Water-flux estimates from the potassium bromide tests at most sites did not represent overall recharge rates because the bromide remained primarily in the root zone. Apparent groundwater age was used to determine the groundwater residence time at the eight sites and to estimate recharge rates. Groundwater ages in the study area ranged from old water (defined here as groundwater that was recharged more than 50 years ago) to modern (defined here as groundwater that has recharged within the past 10 years). Groundwater ages indicated that the shallow monitoring wells generally had younger residence times, whereas the deeper monitoring wells generally had the older residence times. Groundwater dates from the shallowest monitoring wells were used to determine recharge rates at the water table. These rates generally were similar to recharge rates determined from tritium and chloride mass-balance methods. Groundwater recharge rates generally increased with well depth, and the deeper monitoring wells likely do not represent local recharge conditions but recharge from a regional flow system that receives recharge from distant sources. Overall, these data generally indicate that water movement within the unsaturated zone primarily is affected by spatial contrasts in mean annual precipitation and by the land use or land cover. The eight unsaturated-zone sites each generated unique, valuable datasets that likely will improve the understanding of water movement and recharge rates in the central Platte River valley.

Nebraska↗

USGS2005

Seed dispersal into wetlands: Techniques and results for a restored tidal freshwater marsh

Although seed dispersal is assumed to be a major factor determining plant community development in restored wetlands, little research exists on density and species richness of seed available through dispersal in these systems. We measured composition and seed dispersal rates at a restored tidal freshwater marsh in Washington, DC, USA by collecting seed dispersing through water and wind. Seed dispersal by water was measured using two methods of seed collection: (1) stationary traps composed of coconut fiber mat along an elevation gradient bracketing the tidal range and (2) a floating surface trawl net attached to a boat. To estimate wind dispersal rates, we collected seed from stationary traps composed of coconut fiber mat positioned above marsh vegetation. We also collected a small number of samples of debris deposited along high tide lines (drift lines) and feces of Canada Goose to explore their seed content. We used the seedling emergence method to determine seed density in all samples, which involved placing the fiber mats or sample material on top of potting soil in a greenhouse misting room and enumerating emerging seedlings. Seedlings from a total of 125 plant species emerged, during this study (including 82 in river trawls, 89 in stationary water traps, 21 in drift lines, 39 in wind traps, and 10 in goose feces). The most abundant taxa included Bidens frondosa, Boehmeria cylindrica, Cyperus spp., Eclipta prostrata , and Ludwigia palustris . Total seedling density was significantly greater for the stationary water traps (212±30.6 seeds/m 2 /month) than the equal-sized stationary wind traps (18±6.0 seeds/m 2 /month). Lower-bound estimates of total species richness based on the non-parametric Chao 2 asymptotic estimators were greater for seeds in water (106±1.4 for stationary water traps and 104±5.5 for trawl samples) than for wind (54±6.4). Our results indicate that water is the primary source of seeds dispersing to the site and that a species-rich pool of dispersing propagules is present, an interesting result given the urbanized nature of the surrounding landscape. However, species composition of dispersing seeds differed from vegetation of restored and natural tidal freshwater marshes, indicating that planting is necessary for certain species. At other restoration sites, information on densities of dispersing seeds can support decisions on which species to plant.

Washington D.C.↗

USGS2012

Watershed modeling applications in south Texas

Watershed models can be used to simulate natural and human-altered processes including the flow of water and associated transport of sediment, chemicals, nutrients, and microbial organisms within a watershed. Simulation of these processes is useful for addressing a wide range of water-resource challenges, such as quantifying changes in water availability over time, understanding the effects of development and land-use changes on water resources, quantifying changes in constituent loads and yields over time, and quantifying aquifer recharge temporally and spatially throughout a watershed. The U.S. Geological Survey (USGS), in cooperation with State and Federal agency partners, developed simulation models for several watersheds in south Texas. These models provide the capability to simulate scenarios of possible future conditions and management alternatives to help water-resource professionals with planning decisions. The program used for creating these Texas watershed models is the Hydrological Simulation Program - FORTRAN (HSPF). HSPF is one of the most comprehensive watershed modeling programs because it can simulate a variety of stream and watershed conditions with reasonable accuracy and enables flexibility in adjusting the model to simulate alternative conditions or scenarios. The HSPF model provides time-series data simulating water movement (runoff from land surfaces, infiltration of water through soil layers, flow in stream channels) and water-quality parameter values and constituent concentrations associated with the water movement at any selected location in the watershed. Time-series outputs from an HSPF simulation are continuous (for example, hourly or daily). Continuous models provide the advantage of simulating watershed processes for a full range of streamflow conditions. Continuous models can illustrate how processes that appreciably affect water-quality conditions during low flows might have relatively minor effects on water-quality conditions during high flows. This fact sheet presents an overview of six selected watershed modeling studies by the USGS and partners that address a variety of water-resource issues in south Texas. These studies provide examples of modeling applications and demonstrate the usefulness and versatility of watershed models in aiding the understanding of hydrologic systems.

Texas↗

USGS2011

Hydrogeology, chemical characteristics, and water sources and pathways in the zone of contribution of a public-supply well in San Antonio, Texas

In 2001, the National Water-Quality Assessment (NAWQA) Program of the U.S. Geological Survey initiated a series of studies on the transport of anthropogenic and natural contaminants (TANC) to public-supply wells (PSWs). The main goal of the TANC project was to better understand the source, transport, and receptor factors that control contaminant movement to PSWs in representative aquifers of the United States. Regional- and local-scale study areas were selected from within existing NAWQA study units, including the south-central Texas Edwards aquifer. The local-scale TANC study area, nested within the regional-scale NAWQA study area, is representative of the regional Edwards aquifer. The PSW selected for study is within a well field of six production wells. Although a single PSW was initially selected, because of constraints of well-field operation, samples were collected from different wells within the well field for different components of the study. Data collected from all of the well-field wells were considered comparable because of similar well construction, hydrogeology, and geochemistry. An additional 38 PSWs (mostly completed in the confined part of the aquifer) were sampled throughout the regional aquifer to characterize water quality. Two monitoring well clusters, with wells completed at different depths, were installed to the east and west of the well field (the Zarzamora and Timberhill monitoring well clusters, respectively). One of the monitoring wells was completed in the overburden to evaluate potential hydrologic connectivity with the Edwards aquifer. Geophysical and flowmeter logs were collected from one of the well-field PSWs to determine zones of contribution to the wellbore. These contributing zones, associated with different hydrogeologic units, were used to select monitoring well completion depths and groundwater sample collection depths for depth-dependent sampling. Depth-dependent samples were collected from the PSW from three different depths and under three different pumping conditions. Additionally, selected monitoring wells and one of the well-field PSWs were sampled several times in response to a rainfall and recharge event to assess short-term (event-scale) temporal variations in water quality. For comparison purposes, groundwater samples were categorized as being from regional aquifer PSWs, from the well field (wellhead samples), from the monitoring wells (excluding the overburden well), from the overburden well, from the PSW depth-dependent sampling, and from temporal sampling. Groundwater samples were analyzed for inorganic, organic, isotopic, and age-dating tracers to characterize geochemical conditions in the aquifer and provide understanding of the mechanisms of mobilization and movement of selected constituents from source areas to a PSW. Sources, tracers, and conditions used to assess water quality and processes affecting the PSW and the aquifer system included (1) carbonate host rock composition; (2) physicochemical constituents; (3) major and trace element concentrations; (4) saturation indices with respect to minerals in aquifer rocks; (5) elemental ratios, such as magnesium to calcium ratios, that are indicative of water-rock interaction processes; (6) oxidation-reduction conditions; (7) nutrient concentrations, in particular nitrate concentrations; (8) the isotopic composition of nitrate, which can point to specific nitrate sources; (9) strontium isotopes; (10) stable isotopes of hydrogen and oxygen; (11) organic contaminant concentrations, including pesticides and volatile organic compounds; (12) age tracers, apparent-age distribution, and dissolved gas data used in age interpretations; (13) depth-dependent water chemistry collected from the PSW under different pumping conditions to assess zones of contribution; and (14) temporal variability in groundwater composition from the PSW and selected monitoring wells in response to an aquifer recharge event. Geochemical results indicate that the well-field and monitoring well samples were largely representative of groundwater in the regional confined aquifer. Constituents of concern in the Edwards aquifer for the long-term sustainability of the groundwater resource include the nutrient nitrate and anthropogenic organic contaminants. Nitrate concentrations (as nitrogen) for regional aquifer PSWs had a median value of 1.9 milligrams per liter, which is similar to previously reported values for the regional aquifer. Nitrate-isotope compositions for groundwater samples collected from the well-field PSWs and monitoring wells had a narrow range, with values indicative of natural soil organic values. A comparison with historical nitrate-isotope values, however, suggests that a component of nitrate in groundwater from biogenic sources might have increased over the last 30 years. Several organic contaminants (the pesticide atrazine, its degradate deethylatrazine, trichloromethane (chloroform; a drinking-water disinfection byproduct), and the solvent tetrachloroethene (PCE)) were widely distributed throughout the regional aquifer and in the local-scale TANC study area at low concentrations (less than 1 microgram per liter). Higher concentrations of PCE were detected in samples from the well-field PSWs and Zarzamora monitoring wells relative to the regional aquifer PSWs. The urban environment is a likely source of contaminants to the aquifer, and these results indicate that one or more local urban sources might be supplying PCE to the Zarzamora monitoring wells and the well-field wells. Samples from the well field also had high concentrations of chloroform relative to the monitoring wells and regional aquifer PSWs. For samples from the regional aquifer PSWs, the most frequently detected organic contaminants generally decreased in concentration with increasing well depth. Deeper wells might intercept longer regional flow paths with higher fractions of older water or water recharged in rural recharge areas in the western part of the aquifer that have been less affected by anthropogenic contaminants. A scenario of hypothetical contaminant loading was evaluated by using results from groundwater-flow-model particle tracking to assess the response of the aquifer to potential contamination. Results indicate that the aquifer responds quickly (less than 1 year to several years) to contaminant loading; however, it takes a relatively long time (decades) for concentrations to reach peak values. The aquifer also responds quickly (less than 1 year to several years) to the removal of contaminant loading; however, it also takes a relatively long time (decades) to reach near background concentrations. Interpretation of geochemical age tracers in this well-mixed karst system was complicated by contamination of a majority of measured tracers and complexities of extensive mixing. Age-tracer results generally indicated that groundwater samples were composed of young, recently recharged water with piston-flow model ages ranging from less than 1 to 41 years, with a median of 17 years. Although a piston-flow model is typically not valid for karst aquifers, the model ages provide a basis for comparing relative ages of different samples and a reference point for more complex hydrogeologic models for apparent-age interpretations. Young groundwater ages are consistent with particle-tracking results from hydrogeologic modeling for the local-scale TANC study area. Age-tracer results compared poorly with other geochemical indicators of groundwater residence time and anthropogenic effects on water quality, indicating that hydrogeologic conceptual models used in groundwater age interpretations might not adequately account for mixing in this karst system. Groundwater samples collected from the well field under a variety of pumping conditions were relatively homogeneous and well mixed for numerous geochemical constituents (with the notable exception of age tracers). Groundwater contributions to the PSW were dominated by well-mixed, relatively homogeneous groundwater, typical of the regional confined aquifer. Zones of preferential flow were determined for the PSW, but groundwater samples from different stratigraphic units were not geochemically distinct. Variations in chemical constituents in response to a rainfall and aquifer recharge event occurred but were relatively minor in the PSW and monitoring wells. This observation is consistent with the hypothesis that the response to individual recharge events in the confined aquifer, unless intersecting conduit flow paths, might be attenuated by mixing processes along regional flow paths. Results of this study are consistent with the existing conceptual understanding of aquifer processes in this karst system and are useful for water-resource development and management practices.

Texas↗

USGS2022

Causality guided machine learning model on wetland CH4 emissions across global wetlands

Wetland CH 4 emissions are among the most uncertain components of the global CH 4 budget. The complex nature of wetland CH 4 processes makes it challenging to identify causal relationships for improving our understanding and predictability of CH 4 emissions. In this study, we used the flux measurements of CH 4 from eddy covariance towers (30 sites from 4 wetlands types: bog, fen, marsh, and wet tundra) to construct a causality-constrained machine learning (ML) framework to explain the regulative factors and to capture CH 4 emissions at sub-seasonal scale. We found that soil temperature is the dominant factor for CH 4 emissions in all studied wetland types. Ecosystem respiration (CO 2 ) and gross primary productivity exert controls at bog, fen, and marsh sites with lagged responses of days to weeks. Integrating these asynchronous environmental and biological causal relationships in predictive models significantly improved model performance. More importantly, modeled CH 4 emissions differed by up to a factor of 4 under a +1°C warming scenario when causality constraints were considered. These results highlight the significant role of causality in modeling wetland CH 4 emissions especially under future warming conditions, while traditional data-driven ML models may reproduce observations for the wrong reasons. Our proposed causality-guided model could benefit predictive modeling, large-scale upscaling, data gap-filling, and surrogate modeling of wetland CH 4 emissions within earth system land models.

Agricultural and Forest Meteorology↗

USGS2019

Remote sensing of dryland ecosystem structure and function: Progress, challenges, and opportunities

Drylands make up roughly 40% of the Earth's land surface, and billions of people depend on services provided by these critically important ecosystems. Despite their relatively sparse vegetation, dryland ecosystems are structurally and functionally diverse, and emerging evidence suggests that these ecosystems play a dominant role in the trend and variability of the terrestrial carbon sink. More, drylands are highly sensitive to climate and are likely to have large, non-linear responses to hydroclimatic change. Monitoring the spatiotemporal dynamics of dryland ecosystem structure (e.g., leaf area index) and function (e.g., primary production and evapotranspiration) is therefore a high research priority. Yet, dryland remote sensing is defined by unique challenges not typically encountered in mesic or humid regions. Major challenges include low vegetation signal-to-noise ratios, high soil background reflectance, presence of photosynthetic soils (i.e., biological soil crusts), high spatial heterogeneity from plot to regional scales, and irregular growing seasons due to unpredictable seasonal rainfall and frequent periods of drought. Additionally, there is a relative paucity of continuous, long-term measurements in drylands, which impedes robust calibration and evaluation of remotely-sensed dryland data products. Due to these issues, remote sensing techniques developed in other ecosystems or for global application often result in inaccurate, poorly constrained estimates of dryland ecosystem structural and functional dynamics. Here, we review past achievements and current progress in remote sensing of dryland ecosystems, including a detailed discussion of the major challenges associated with remote sensing of key dryland structural and functional dynamics. We then identify strategies aimed at leveraging new and emerging opportunities in remote sensing to overcome previous challenges and more accurately contextualize drylands within the broader Earth system. Specifically, we recommend: 1) Exploring novel combinations of sensors and techniques (e.g., solar-induced fluorescence, thermal, microwave, hyperspectral, and LiDAR) across a range of spatiotemporal scales to gain new insights into dryland structural and functional dynamics; 2) utilizing near-continuous observations from new-and-improved geostationary satellites to capture the rapid responses of dryland ecosystems to diurnal variation in water stress; 3) expanding ground observational networks to better represent the heterogeneity of dryland systems and enable robust calibration and evaluation; 4) developing algorithms that are specifically tuned to dryland ecosystems by utilizing expanded ground observational network data; and 5) coupling remote sensing observations with process-based models using data assimilation to improve mechanistic understanding of dryland ecosystem dynamics and to better constrain ecological forecasts and long-term projections.

Remote Sensing of Environment↗

USGS2001

Green fluorescent protein is lighting up fungal biology

Prasher ( 42 ) cloned a cDNA for the green fluorescent protein (GFP) gene from the jellyfish Aequorea victoria in 1992. Shortly thereafter, to the amazement of many investigators, this gene or derivatives thereof were successfully expressed and conferred fluorescence to bacteria and Caenorhabditis elegans cells in culture ( 10 , 31 ), followed by yeast ( 24 , 39 ), mammals ( 40 ), Drosophila ( 66 ), Dictyostelium ( 23 , 30 ), plants ( 28 , 49 ), and filamentous fungi ( 54 ). The tremendous success of GFP as a reporter can be attributed to unique qualities of this 238-amino-acid, 27-kDa protein which absorbs light at maxima of 395 and 475 nm and emits light at a maximum of 508 nm. The fluorescence of GFP requires only UV or blue light and oxygen, and therefore, unlike the case with other reporters (β-glucuronidase, β-galacturonidase, chloramphenicol acetyltransferase, and firefly luciferase) that rely on cofactors or substrates for activity, in vivo observation of gfp expression is possible with individual cells, with cell populations, or in whole organisms interacting with symbionts or environments in real time. Complications caused by destructive sampling, cell permeablization for substrates, or leakage of products do not occur. Furthermore, the GFP protein is extremely stable in vivo and has been fused to the C or N terminus of many cellular and extracellular proteins without a loss of activity, thereby permitting the tagging of proteins for gene regulation analysis, protein localization, or specific organelle labeling. The mature protein resists many proteases and is stable up to 65°C and at pH 5 to 11, in 1% sodium dodecyl sulfate or 6 M guanidinium chloride (reviewed in references 17 and 67 ), and in tissue fixed with formaldehyde, methanol, or glutaraldehyde. However, GFP loses fluorescence in methanol-acetic acid (3:1) and can be masked by autofluorescent aldehyde groups in tissue fixed with glutaraldehyde. Fluorescence is optimal at pH 7.2 to 8.0 ( 67 ). Limitations on GFP as a reporter for some applications are its low turnover rate, 2-h lag time for autoactivation of its chromophore, improper folding at high temperatures (37°C), which results in nonfluorescent and insoluble forms of the protein, and requirement for oxygen, which is not present in equal concentrations in all subcellular locations or cell types (reviewed in references 17 and 67 ). These characteristics of GFP, however, have not posed a problem for many applications, and mutant forms of GFP that have an ability to fold properly at high temperatures, increased solubility and fluorescence, reduced photobleaching ( 16 , 17 , 51 ), and reduced half-lives ( 1 ) have been developed. Coupled with fluorescence-activated cell sorting, confocal microscopy or quantitative image analysis techniques, GFP technology can be used to isolate transformed cells or specific cell types from populations of cells ( 14 ), to quantify gene expression of individual cells within whole organisms ( 8 ), or to assess the dispersal and biomass of organisms in complex environments, such as in animal or plant hosts ( 38 , 59 ), in biofilms ( 55 ), in fermentors ( 41 ), on leaf surfaces ( 53 , 61 ), or in soils ( 2 ). The vast majority of studies utilizing GFP expression in fungi have been with yeast (reviewed in reference 13 ). Ustilago maydis was the first filamentous fungus for which successful expression of gfp was reported ( 54 ), followed closely by Aspergillus nidulans ( 22 , 57 ) and Aureobasidium pullulans ( 61 ). Presently, gfp expression has been reported for 16 species comprising 12 genera of filamentous fungi, including Colletotrichum ( 21 , 44 ), Mycosphaerella ( 52 ), Magnaporthe ( 32 , 35 ), Cochliobolus ( 38 ), Trichoderma ( 2 , 70 ), Podospora ( 5 ), Sclerotinia ( 63 ), Schizophyllum ( 37 ), Aspergillus ( 20 , 47 , 50 ) and Phytophthora ( 7 , 62 ). In this review we draw on published reports, with the goal of providing an overview of GFP technology as it applies to the biology of filamentous fungi. These reports are not exhaustive of potential applications of GFP technology, as examples of genomic approaches to utilizing GFP in bacterial and yeast systems attest ( 4 , 46 , 60 , 65 ). Expression of gfp in filamentous fungi requires a gfp variant that is efficiently translated in fungi, a transformation system, and a fungal promoter that satisfies the requirements of a given experimental objective. Transformation of fungi has recently been reviewed by Gold et al. ( 26 ). Robinson and Sharon ( 44 ) suggest that GFP can actually be used to optimize transformation protocols. In addition to reporting the construction of a new fungal transformation vector that expresses SGFP under the control of the ToxA gene promoter from Pyrenophora tritici-repentis ( 12 ) and demonstrating its use in plant pathogens belonging to eight different genera of filamentous fungi ( Fusarium, Botrytis, Pyrenophora, Alternaria, Cochliobolus, Sclerotinia, Colletotrichum , and Verticillium ), in this review we also enumerate and describe a comprehensive list of vectors for expressing GFP in fungi.

Applied and Environmental Microbiology↗

USGS2007

Major Turbidity Events in the North Santiam River Basin, Oregon, Water Years 1999-2004

Multiple high-turbidity events with values greater than 250 Formazin Nephelometric Units occurred in streams of the North Santiam River basin during water years 1999-2004. By using a combination of field reconnaissance, aerial photography, and geographic information systems, eight of these high-turbidity events were investigated and linked to at least one likely source area and became known as 'major turbidity events.' Sediment source type and location, the amount of material transported, and the results of any follow-up investigation of the source area were recorded for each event. Significant findings from this study include: * Although heavy precipitation caused basinwide erosion that increased turbidity in streams, a major turbidity event often required at least one landslide or similar type of contributing source to introduce enough sediment to raise the turbidity value to greater than 250 Formazin Nephelometric Units. * Different processes drove sediment loading at different times. In general, precipitation eroded sediment from source areas or induced landslides. However, in two cases, warm temperatures caused rapid snowmelt, which supplied the water necessary to erode unconsolidated glacial soils or other sediment material and increase turbidity. * Some source areas, such as existing earthflows, repeatedly supplied a large volume of sediment to streams, whereas other sources, such as landslides or debris flows, were unpredictable and sporadically supplied large volumes of sediment to streams. * Major turbidity events were well distributed throughout the North Santiam River basin; discrete events were observed in each of the five subbasins along unregulated streams. * Suspended-sediment loads and clay-water (persistently turbid water) volume estimates were event-specific and varied greatly between major turbidity events, even though, in some cases, the source area was the same; however, high yields generally were observed for events in the Blowout Creek, Breitenbush River, and Little North Santiam River subbasins. * Suspended-sediment loads for each 3-day precipitation-driven major turbidity event supplied greater than 36 percent of the annual load, and snowmelt-driven events supplied greater than 27 percent of the annual load in a single day. * Clay-water yields for event periods generally were highest in the Little North Santiam River subbasin. In addition, average annual percentage of clay-water volume during the period of record was highest in the Little North Santiam River. The second highest average was in Blowout Creek.

Scientific Investigations Report↗

USGS1988

An isotopic study of a fluvial-lacustrine sequence: The Plio-Pleistocene koobi fora sequence, East Africa

Stable isotopic analyses of Plio-Pleistocene and modern sediments in the fluvial-lacustrine system occupying the Turkana Basin, East Africa provide constraints on the paleoenvironmental and diagenetic histories of the Pliocene through the Recent sediments in the basin. The δ 13 C values for carbonates in lacustrine sediments range from −15 to +22‰ relative to PDB, depending on the varying proportions of CO 2 from the atmospheric reservoir and from various metabolic sources. The δ 18 O values of carbonates in lacustrine sediments indicate that the isotopic composition of paleolake water varied by over 10‰ from the Pliocene to the present. The δ 13 C values for pedogenic carbonates record paleoccologic variations and suggest that C 4 plants did not become well established in the preserved depositional parts of the basin until about 1.8 myr ago. The δ 18 O values pedogenic carbonates suggest a range of over 10‰ for the isotopic composition of soil water during this interval. They also suggest a period of major climatic instability from about 3.4 to 3.1 myr and at about 1.8 myr. Together, the δ 13 C and δ 18 O values of pedogenic carbonates indicate that the present conditions are as arid and hot as any that had prevailed during deposition of these Plio-Pleistocene sediments.

Lake Turkana Basin↗