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Preventing overfitting when using tree-based methods for mapping hydrothermal favorability

Ensemble tree-based algorithms are robust tools for estimating sparsely distributed resources with non-linear dependencies (e.g., hydrothermal systems). These algorithms naturally accommodate the threshold conditions necessary to enable and support hydrothermal systems (e.g., having sufficient heat and permeability) and are simpler than many other non-linear machine learning strategies (e.g., artificial neural networks), which is an advantage when working with few labeled examples from which to learn. In previous work, we used eXtreme Gradient Boosting (XGBoost) to produce regional prediction and uncertainty maps of hydrothermal favorability; however, recent studies suggest that, even when properly applied, XGBoost has some risk of overfitting when there are few labeled examples from which to learn. To evaluate overfitting when constructing hydrothermal favorability maps with tree-based methods, we compare XGBoost with Extremely Randomized Trees (ExtraTrees), another ensemble tree-based algorithm that has the potential to underfit when using few labeled examples. We hold all other modeling parameters constant, resulting in two contrasting favorability maps of conventional geothermal resources for the Great Basin. Our results indicate that ExtraTrees demonstrably reduces overfitting compared with XGBoost. After considering overall performance, we conclude that ExtraTrees provides a more suitable modeling approach than XGBoost for the purposes of conventional hydrothermal resource assessments.

Conference Paper

Simulating human behavior under earthquake early warning

Earthquakes are a rapid-onset hazard where advance planning and learning plays a key role in mitigating injuries and death to individuals. Recent advances in earthquake detection have resulted in the development of earthquake early warning (EEW) systems. These systems can provide advance warning to predetermined geographic regions that an earthquake is in progress, which may result in individuals receiving warning seconds before significant shaking is felt at their location. This additional time could allow individuals to take more effective protective actions during the immediate disaster. To demonstrate this, we created an agent-based simulation of a basic apartment that allowed us to randomly and repeatedly simulate an individual receiving and responding to an EEW message. The results of our preliminary simulation show that, in our study environment, earthquake early warning alerts have the potential to allow for sufficient time for individuals to take protective actions.

Washington

Is satellite-derived bathymetry vertical accuracy dependent on satellite mission and processing method?

This research focusses on three satellite-derived bathymetry methods and optical satellite instruments: (1) a stereo photogrammetry bathymetry module (SaTSeaD) developed for the NASA Ames stereo pipeline open-source software (version 3.6.0) using stereo WorldView data; (2) physics-based radiative transfer equations (PBSDB) using Landsat data; and (3) a modified composite band-ratio method for Sentinel-2 (SatBathy) with an initial simplified calibration, followed by a more rigorous linear regression against in situ bathymetry data. All methods were tested in three different areas with different geological and environmental conditions, Cabo Rojo, Puerto Rico; Key West, Florida; and Cocos Lagoon and Achang Flat Reef Preserve, Guam. It is demonstrated that all satellite derived bathymetry (SDB) methods have increased accuracy when the results are aligned with higher-accuracy ICESat-2 ATL24 track bathymetry data using the iterative closest point (ICP). SDB vertical accuracy depends more on location characteristics than the method or optical satellite instrument used. All error metrics considered (mean absolute error, median absolute deviation, and root mean square error) can be less than 5% of the maximum bathymetry depth penetration for at least one method, although not necessarily for the same method for all sites. The SDB error distribution tends to be bimodal irrespective of method, satellite instrument, alignment, site, or maximum bathymetry depth, leading to the potential ineffectiveness of traditional error metrics, such as the root mean square error. However, our analysis demonstrates that performing detrending where possible can achieve an error distribution as close to normality as possible for which error metrics are more diagnostic.

Florida

Climate-driven sulfate export in alpine watersheds may stimulate methylmercury production

Climate change is increasing sulfate export and changing wetland extent in mountain regions. These changes may increase microbially mediated production of the neurotoxic substance methylmercury due to enhanced sulfate metabolism in mountain environments. Here, we assess methylmercury concentrations and formation rates across high-elevation wetlands in the Colorado Rocky Mountains. We also investigate sulfate controls on methylmercury production within subalpine peatlands by amending soils with sulfate to mimic increased stream export of sulfate from the alpine zone and measuring methylmercury formation rates for different sulfate treatments. We found that subalpine peatlands have statistically significant higher methylmercury concentrations and formation rates compared to alpine, mineral-soil wetlands. Methylmercury production in subalpine peatlands also increased significantly ( p < 0.05) following sulfate additions; the highest rates occurred in sediments with intermediate extractable sulfate concentrations (∼0.60–1.4 mg sulfate g −1 dry soil). Our study is the first to identify soil sulfate-related thresholds for methylmercury production and sulfate-limitation of methylmercury production in subalpine peatlands. These findings highlight important linkages between climate-driven mineral weathering and mercury cycling in mountain regions globally.

Colorado

Roadway runoff induced acute mortality in juvenile coho salmon during spring storm events

Extensive mortalities of adult coho salmon ( Oncorhynchus kisutch ), often called “Urban Runoff Mortality Syndrome” (URMS), have been documented during the fall in creeks where water quality has been degraded by roadway runoff. The primary cause of mortality is 6PPD-quinone (6PPDQ; N -(1,3-dimethylbutyl)- N ′-phenyl- p -phenylenediamine quinone)–an ozone transformation product that forms on all vehicle tires. Laboratory studies have shown that juvenile coho salmon are highly sensitive to 6PPDQ exposure. Unlike adults, juveniles reside in impacted watersheds year-round, including during the spring when 6PPDQ concentrations can frequently exceed lethal thresholds during storms. To assess the potential incidence of URMS in springtime rearing habitats for juvenile coho salmon, we conducted a paired water quality and toxicology study at Miller Creek, a runoff-impacted watershed in Normandy Park, WA, USA. Using a small field facility, three naïve groups of juvenile coho salmon ( N = 720) were exposed to either creek water or groundwater ( N = 120 per treatment per storm), across three spring storms while comparing water quality and mortality end points. In creek water during exposures, peak 6PPDQ concentrations reached 73–110 ng/L, exceeding reported median lethal concentrations (LC 50 ) for coho salmon. Over each 24–73 h storm exposure period, ∼80% of Miller Creek-exposed juvenile salmon died. No mortality occurred among control fish exposed to groundwater. These results indicate previously unidentified mortality risks for juvenile life stages of coho salmon during spring storms, suggesting substantial and year-round water quality impediments to coho salmon health and recovery across roadway runoff-impacted spawning, rearing, and migratory habitats.

Washington

Cnidarian–algal partnerships structure bacterial communities during strobilation in Cassiopea xamachana

Cnidarian–algal (Symbiodiniaceae) symbioses rely on complex interactions among the cnidarian host, algal symbionts, and associated bacterial communities. In the upside-down jellyfish Cassiopea xamachana , the polyp-to-medusa transition (strobilation) requires the establishment of symbiosis with Symbiodiniaceae algal partners, yet bacterial community dynamics during this developmental process remain unknown. Here, we experimentally induced symbiosis in aposymbiotic polyps using four algal treatments: xenic Symbiodinium microadriaticum (native symbiont), xenic Breviolum minutum , antibiotic-treated B. minutum , and a photosynthetically impaired B. minutum mutant. We combined 16S rRNA gene sequencing with measurements of photosynthetic efficiency, asexual budding, and algal surface N-glycan profiles to characterize holobiont assembly during symbiosis onset and strobilation. Algal treatment structured bacterial communities in both algal cultures and polyp tissues. Our analyses identified a set of amplicon sequence variants that consistently distinguished strobilating polyps from non-strobilating aposymbiotic and mutant polyps, in addition to potential bacterial biomarkers associated with successful metamorphosis. Strobilation was associated with the enrichment of bacterial communities putatively involved in sulfur and nitrogen cycling, whereas non-strobilating aposymbiotic and mutant polyps were characterized by opportunistic bacteria and increased community variability. Together, these results reveal coordinated changes in algal physiology, surface glycan profiles, and bacterial community structure associated with successful strobilation in C. xamachana and support a model in which tripartite host–alga–bacteria interactions influence cnidarian life stage transitions.

ISME Communications

Short-term sediment dispersal on a large retreating coastal river delta via 234Th and 7Be sediment geochronology: The Mississippi River Delta Front

Many Mississippi River Delta studies have shown recent declines in fluvial sediment load from the river and associated land loss. In contrast, recent sedimentary processes on the subaqueous delta are less documented. To help address this knowledge gap, multicores were collected offshore from the three main river outlets at water depths of 25–280 m in June 2017 just after the peak river discharge period, with locations selected based on 2017 U.S. Geological Survey seabed mapping. The coring locations included the undisturbed upper foreset, mudflow lobes, gullies, and the undisturbed prodelta. Nine multicores were analyzed for Beryllium-7 activity, and four cores were analyzed for excess Thorium-234 activity via gamma spectrometry, granulometry and X-radiography. Our results indicate a general trend of declining 7 Be and 234 Th activities and inventories with increasing distance from sources and in deeper water. The core X-radiographs are graded from the predominantly physically stratified nearshore to the more bioturbated offshore, consistent with the sedimentation patterns. Sediment focusing assessed via the 7 Be and 234 Th sediment inventories shows preferential sedimentation in gully and lobe environments, whereas the upper foreset and prodelta focusing factors are relatively depleted. Overall, short-term sediment deposition from the main fluvial source remains active offshore from all three major river outlets, despite the overall declining river load.

Louisiana

High-pass corner frequency selection and review tool for use in ground-motion processing

Raw seismological waveform data contain noise from the instrument’s surroundings and the instrument itself that can dominate recordings at low and high frequencies. To use these data in ground‐motion modeling, the effects of noise on the signals must be reduced and the signals’ usable frequency range identified. We present automated procedures to efficiently reduce low‐frequency noise that are implemented in the software package gmprocess. These procedures check for, and as needed remove, low‐frequency artifacts in the displacement record using polynomial fits, which can be used in combination with existing signal‐to‐noise ratio (SNR)‐based corner‐frequency selection procedures. The automated selections are then efficiently verified and refined using a graphical user interface (GUI) that plots relevant ground‐motion time series and spectra and tracks modifications to signal processing parameters. We demonstrate these procedures using recordings from the 2020 M 5.1 Sparta, North Carolina, and the 2013 M 4.7 southern Ontario earthquakes. Data processed with the SNR‐only and polynomial criteria for these events contain displacement artifacts in 37% and 23% of processed traces, respectively. Records with remaining artifacts are corrected manually using the GUI. These processing steps illustrate the workflow for efficient data processing with quality control.

Seismological Research Letters

Hydrological control on soil redox condition and carbon loss of coastal wetland under sea-kevel rise

Coastal wetlands are critical carbon sinks with their biogeochemical and ecological functioning shaped by dynamic hydrological conditions that are increasingly influenced by climate change. A key unresolved question is how hydrologic flow, vegetation response, and rising sea levels interact to regulate soil redox condition and carbon loss in coastal wetlands. Using a field-tested hydrological–biogeochemical–ecological modeling framework, we reveal how the interplay between terrestrial groundwater discharge and tidal fluctuations generates complex groundwater flow patterns at the terrestrial–aquatic interface, and how these patterns modulate soil redox conditions, in turn influencing soil organic matter decomposition and carbon loss. Notably, rising sea levels suppress soil CO 2 emissions while reducing lateral dissolved carbon losses, thereby enhancing litter carbon sequestration under anoxic conditions. As vegetation responds to sea-level rise and carbon inputs diminish, litter carbon subsequently declines. These findings underscore a critical hydrological control on carbon cycling, advancing our understanding of coastal ecosystem resilience in a warming world.

Louisiana

Aspergillosis (Avian) case definition for wildlife

Diagnostic laboratories receive carcasses and samples for diagnostic evaluation and pathogen/toxin detection. Case definitions bring clarity and consistency to the evaluation process. Their use within and between organizations allows more uniform reporting of diseases and etiologic agents. The intent of a case definition is to provide scientifically based criteria for determining: (a) if an individual carcass has a specific disease and degree of confidence in that diagnosis and (b) if there is evidence of a pathogen or toxin in a carcass or sample (for example, swab, tissue sample, skin scraping, blood/serum sample, environmental sample, or other). This case definition is specific to aspergillosis and applies to all avian species.

Techniques and Methods

Water table rise sustains carbon release from soils in wetland-dominated landscapes: An intact soil core study

Wetland-dominated landscapes influence carbon cycling through their potential to act as both carbon sinks and sources. Wetlands in low-relief landscapes have dynamic terrestrial-aquatic interfaces that change seasonally with variable surface water and groundwater levels. However, few studies have directly quantified dissolved organic matter (DOM) release and greenhouse gas (CO 2 , CH 4 ) fluxes from wetland soils along terrestrial-aquatic interfaces as they are seasonally re-saturated by groundwater. To estimate groundwater-mediated soil DOM and gas fluxes, we performed laboratory simulations of vertical groundwater rise on intact soil cores collected from four Delmarva bay wetlands located in the Mid-Atlantic United States. At each wetland, one core was collected from within the wetland basin and the other from the transitional zone at the basin edge. Cores were re-saturated with groundwater over 15 days and then kept fully saturated for an additional 25 days. Source groundwater, soil porewater, and exfiltrated surface water samples were collected and analyzed for pH, ORP, DOM concentration, and DOM optical indices. In both the wetland and transition zone cores, porewater DOM concentrations increased over the wet up and were sustained during prolonged saturation. Optical indices shifted from recently produced, microbial-like signatures towards aromatic, terrestrial-like signatures. Fluxes of CO 2 decreased as the duration of soil saturation increased and soil cores switched from CH 4 sinks to sources upon full soil core saturation. Results indicate that groundwater rise sustains carbon mobilization from soils in wetland-dominated landscapes, emphasizing the need to understand how climate-driven changes to groundwater dynamics may affect carbon fluxes along terrestrial-aquatic interfaces.

Delaware, Maryland

Where will the cat cross the road? Comparing camera and GPS-based models for identifying wildlife corridors

Designing effective wildlife corridors is a critical conservation challenge in fragmented landscapes. GPS-based step selection functions strongly predict dispersal corridors and connectivity, but GPS collaring can be expensive and invasive. Camera-based occupancy models are widely used for connectivity analyses but may involve trade-offs in data resolution. Despite widespread use of both approaches, few studies have directly compared them using concurrent datasets. We developed a stacked single-species, single-season occupancy model and a Circuitscape connectivity surface for mountain lions (Puma concolor) on Washington’s Olympic Peninsula, USA, and compared them with a connectivity surface from an existing integrated step selection function. Both models predicted mountain lion GPS locations well, with binned Spearman rank correlations of 1 for Circuitscape and 0.96 for the step selection function, though step selection better identified habitat use by dispersers. Connectivity predictions were moderately correlated across the landscape ( r = 0.26), but agreement was strongest in human-dominated areas most critical for corridor planning. We conclude that GPS-based approaches are advantageous when data collection is feasible and the focus is on dispersal or fine-scale movement. However, camera-based approaches may be preferable for multi-species monitoring, large spatial and temporal scales, noninvasive sampling, when resources are limited, or when fine-scale or dispersal-specific inference is not required.

Washington

Flood-inundation maps for Río Grande De Loíza in and near Caguas, Puerto Rico, 2026

Digital flood-inundation maps for a 2.7-mile reach of Río Grande De Loíza in Caguas, Puerto Rico, were created by the U.S. Geological Survey. Water-surface profiles were computed for the stream reach by using a one-dimensional, steady-state, step-backwater model. The model was calibrated to the current (2025) stage-streamflow relation (rating curve) for the U.S. Geological Survey streamgage 50055000, Río Grande De Loíza, Puerto Rico. The resulting hydraulic model was then used to compute 16 water-surface profiles for water levels (flood stages) ranging from 19.00 to 34.00 feet at the streamgage; these flood stages range from “moderate flood stage” to above “major flood stage” as defined by the National Weather Service. The 34.00-foot stage exceeds the historical maximum peak stage of 33.20 feet, recorded at the streamgage in 1945. The simulated water-surface profiles were used in combination with a digital elevation model derived from light detection and ranging (lidar) data to map the inundated areas associated with each flood profile. The flood-inundation maps and the supporting hydraulic model produced by this study can be used by emergency managers and local officials to assess flood-mitigation strategies and to define flood-hazard areas to help protect life and property, to coordinate flood-response activities such as evacuations and road closures, and to aid post-flood recovery efforts.

Puerto Rico

Variable pH habitats could help prepare stone crabs for coastal acidification

Coastal acidification is being exacerbated by terrestrial organic inputs, especially after high precipitation events. Florida’s rainy season coincides with stone crab ( Menippe mercenaria) reproduction, and pH extremes could limit future harvests by reducing reproductive output. Populations that experience pH variability can serve as “natural laboratories” for estimating the tolerance of a species to coastal acidification. Here, we conducted a series of experiments to determine if ovigerous stone crabs conditioned in more variable pH habitats (seagrass) would result in faster embryonic development, greater hatching success, and higher larval survival relative to crabs conditioned in habitats with lower pH variability (sandy habitats). After field conditioning, crabs were transported to the laboratory and randomly acclimated to either a control pH (pH = ~ 7.90) or a reduced pH condition (pH = ~ 7.60) until larval release. The rate of embryo development was slower in the laboratory reduced pH treatment, however, there were no observable field condition effects on embryo development rate. Crabs conditioned in the more pH variable seagrass habitat did have greater hatching success and higher larval survival than crabs in less pH variable sandy habitats; however, larval survival was low across all treatments. These results suggest that the pH variability experienced in seagrass habitats during brooding may serve as a mechanism for stone crabs to acclimatize to extremes in seawater pH.

Marine Biology

Interplay between tectonics and submarine mass transport deposits in Cortes Basin: New high-resolution geophysics in the Outer California Borderland

The Outer California Borderland (OCB) is an active transform plate boundary offshore Southern California, where the relationship between faulting and submarine mass transport deposits (MTDs) remains poorly understood. Onshore paleoseismic data provide high-resolution earthquake records, whereas marine geophysical data capture longer-term histories. Offshore fault systems pose hazards to infrastructure and dense coastal populations, particularly when linked to submarine landslides. We present new high-resolution geophysical data set (cruise SR2303), including bathymetric and CHIRP sub-bottom data integrated with legacy seismic reflection data and chronostratigraphic constraints from ODP Site 1012 to examine Quaternary MTD recurrence and tectonic controls in the Cortes Basin, OCB. Bathymetry shows deformational features, including slide scarps and previously unmapped fault segments with evidence of Holocene activity. CHIRP profiles reveal 10 stacked MTDs in the East Cortes Basin and 8 in the West Cortes Basin, spanning ∼752 ka with an average recurrence of ∼83.6 ± 1 ka. Acoustic imaging shows 7 MTD intervals coinciding with fault offset increments and fault growth suggesting earthquake-triggered mass wasting. A strong association between MTD occurrences and sea-level extremes also supports glacio-eustatic contribution to slope failure. Stratigraphic correlations suggest quasi-synchronous MTDs across the eastern and western areas, likely triggered by larger eathquakes in the Quaternary. Although the identified MTDs occur relatively far from the Southern California coast, they still pose a potential tsunamigenic hazard requiring further assessment. Moreover, if linked to earthquakes along major strike-slip faults, for example, the Ferrelo fault, the MTDs may provide valuable proxies to constrain rupture scenarios and fault connectivity within the understudied OCB.

California

Observing northern high-latitude river systems to understand changes in a warming Arctic

Purpose of Review Streams and rivers are undergoing rapid change as the Arctic warms and thaws. We review recent observations in Arctic stream systems to identify ubiquitous changes and the most useful tools for observing change and exploring the underlying processes. Recent Findings Recent literature indicates increasingly significant trends in river hydrology and chemistry due to persistent warming in the Arctic and longer observational records for analysis. However, regional differences in the magnitude and direction of these trends persist. We also observe thresholds in ground thaw and surface–groundwater interactions that can impact river hydrology and chemistry. Summary Warming and thaw are occurring rapidly at high latitudes, resulting in increasing, yet variable responses in stream systems across regions and scales. These differences highlight the need for long-term records and an interdisciplinary approach to explain trends and predict future states. Stream systems respond to multiple landscape changes related to hydrology (changing precipitation and subsurface flow), geology (ground thaw dynamics), and ecology (vegetation change).

Current Climate Change Reports

Flood-inundation maps for Río de la Plata in and near Comerío, Puerto Rico, 2025

Digital flood-inundation maps for a 3.1-mile reach of Río de la Plata in and near Comerío, Puerto Rico, were created by the U.S. Geological Survey (USGS). Water-surface profiles were computed for the stream reach by using a one-dimensional steady-state step-backwater model. The model was calibrated to the current (2025) stage-streamflow relation (rating curve 11.0) for the USGS streamgage 50043800, Río de la Plata at Comerío, Puerto Rico. The resulting hydraulic model was then used to compute 16 water-surface profiles for water levels (flood stages) ranging from 10.00 to 40.00 feet at the streamgage and ranging from “action stage” to above “major flood stage” as reported by the National Weather Service. The 40.00-foot stage was selected because it exceeds the peak stage of 34.86 ft recorded during Hurricane Maria at the USGS streamgage 50043800, Río de Plata at Comerío, Puerto Rico. The simulated water-surface profiles were then used in combination with a digital elevation model derived from light detection and ranging data to map the inundated areas associated with each flood profile. The flood-inundation maps and the supporting hydraulic model produced by this study can be used by emergency managers and local officials to assess flood mitigation strategies and to define flood hazard areas to help protect life and property, to coordinate flood response activities such as evacuations and road closures, and to aid post-flood recovery efforts.

Comerio

Developments in African industrial minerals for renewable energy

Introduction Africa is emerging as a leading source for minerals used in the manufacture of batteries for electric vehicles and in other renewable energy applications. New graphite, lithium, and rare-earth mines have or could be opened in African countries from 2017 through 2026. Estimates of production capacities for graphite, lithium, and rare-earth mines for 2023 and beyond are based upon supply-side assumptions, such as announced plans for new capacity construction and bankable feasibility studies, as well as projected trends that could affect current producing facilities in 2023 and planned new facilities projected to come online by 2026. Forward-looking information, including estimates of future production capacities, graphite flake distributions, and timing of the start of operations, are subject to risk factors and uncertainties that could cause actual events or results to differ significantly from expected outcomes. Projects listed in this report are presented as an indication of industry plans and are not a U.S. Geological Survey (USGS) prediction of what will take place. Only projects with planned startup dates are included in this report; ther graphite, lithium, and rare-earth projects in Africa without startup dates were known to be in various stages of development but are not included in this fact sheet.

Fact Sheet