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At least 1,585 records · Page 88Linked to original sources
USGS2024

Intraguild interactions and abiotic conditions mediate occupancy of mammalian carnivores: Co-occurrence of coyotes–fishers–martens

The widespread eradication of large carnivores and subsequent expansion of top mesopredators has the potential to impact species and community interactions with ecosystem-wide implications. An example of these trophic dynamics is the widespread establishment of coyotes following extirpation of wolves and mountain lions in eastern North America. Here, we examined occupancy of three carnivores in northern New York considering both environmental/habitat factors and interspecific interactions. We estimated the co-occurrence of coyotes, fishers, and martens from a landscape-scale winter camera trap survey repeated annually for three years. Martens occurred independently of both coyotes and fishers, while fishers and coyotes displayed positive intraguild interactions that were constant across the landscape. Both marten and fisher first-order occupancy were driven by a combination of biotic and abiotic factors, with both species displaying positive associations with forest cover but antithetical responses to average snow depth. The integral and antithetical role of snow depth in driving the occurrence of martens (positive) and fishers (negative) in the landscape indicates that future climatic warming could reduce the availability of current spatial refuges for martens created by severe winter conditions. Climate-driven alterations to established competitive interactions and co-existence patterns between marten and fisher have critical implications for the species survival and conservation. We provide correlational evidence consistent with the potential for positive top–down effects of dominant mesocarnivores on subordinate species, with fisher occupancy increasing conditional on the presence of coyotes across the landscape. These findings align with the hypothesis that under certain conditions, coyotes may facilitate certain subordinate carnivores. The evidence produced here is consistent with hypotheses on the dynamic nature of trophic niches. We demonstrate the need to consider the interplay between climate, habitat, and interspecific interactions to understand wildlife occupancy patterns and inform wildlife management in a rapidly changing world.

New York↗
USGS1998

Potentiometric surface of the Cockfield aquifer in southeastern Arkansas and the Wilcox aquifers in southern and northeastern Arkansas, October 1996-July 1997

The Cockfield and Wilcox aquifers are secondary sources of water for local use in southern and northeastern Arkansas, where in 1995 more than 51 million gallons per day of water was withdrawn. During October 1996 to July 1997, water levels in the Cockfield and Wilcox aquifers were measured in 104 wells in Arkansas. The potentiometric surface data reveal spatial trends in both aquifers across the study areas. The regional direction of ground-water flow of the Cockfield aquifer is generally southeastward, away from the outcrop area, except where affected by intense ground-water withdrawals. The potentiometric surface indicates that heavy pumpage has altered or reversed the natural direction of flow in some areas. Flow in these areas is toward centers of pumping within cones of depression. A cone of depression caused by the pumpage near Greenville, Mississippi, extends into Chicot, Desha, and Drew Counties. This cone of depression has altered flow patternArkansas. Long-term hydrographs of six wells, during the period 1971-1996, showed water levels declined at an average rate between 0.5 and 1.0 foot per year at these locations. The regional direction of ground-water flow in the Wilcox aquifers is generally toward the east and south, away from the outcrop except where water levels are affected by intense ground-water withdrawals. The potentiometric surface indicates that heavy pumpage has altered or reversed the natural direction of ground-water flow in some areas. Flow in these areas is toward centers of pumping within cones of depression. Two cones of depression are centered in the vicinity of Paragould and West Memphis, Arkansas, where ground-water withdrawals have altered the natural direction of flow. Long-term hydrographs of seven wells, during the period 1971- 1996, show water-level declines in the Wilcox aquifer in northeastern Arkansas generally were between 0.5 and 1.0 foot per year but were more than 1.0 foot per year in two wells. The U.S. Geological Survey in cooperation with the Arkansas Soil and Water Conservation Commission and the Arkansas Geological Commission has monitored water levels in the Cockfield and Wilcox aquifers since the 1960's. During October 1996 to July 1997, 53 water-level measurements were made in wells completed in the Cockfield aquifer, 13 water-level measurements were made in wells completed in the Wilcox aquifer in southern Arkansas, and 38 water-level measurements were made in wells com- pleted in the Wilcox aquifer in northeastern Arkansas. The purpose of these measurements was to provide information to describe the recent potentiometric surfaces and long-term water-level trends in the Cockfield and Wilcox aquifers. This report presents the results as potentiometric surface maps and as long-term water-level hydrographs.

Arkansas↗
USGS1990

Synthesis of soil-plant correspondence data from twelve wetland studies throughout the United States

This report synthesizes the information collected for the U.S. Fish and Wildlife Service in a series of 12 studies designed to describe the relation between soils and vegetation in wetlands located in 11 States throughout the United States. Results of the study demonstrated almost complete agreement between hydric soils and hydrophytic vegetation. However, agreement between nonhydric soils and nonhydric vegetation was not as high because most nonhydric soils lay adjacent to the wetland boundary. There was some evidence that various vegetation layers describe the hydrophytic nature of the vegetation differently than others. Herbaceous species seem to reflect current hydrologic conditions while trees may reflect past hydrologic conditions. Wetland indicator categories for some plants listed in the Fish and Wildlife Service national list of plant species that occur in wetlands may need to be reevaluated as additional data become available. Similarly, soils listed in the Soil Conservation Service hydric soils of the United States list should always be verified in the field prior to assigning them to a hydric category. While wetland hydrology is the critical factor determining wetlands, the use of soils and vegetation are frequently adequate for designating wetland conditions.

Report↗
USGS2011

The effects of isolation on the demography and genetic diversity of long-lived species: Implications for conservation and management of the gopher tortoise (Gopherus polyphemus)

In the southeastern United States, habitat loss has fragmented the landscape and isolated many populations of this region's flora and fauna, which has presumably resulted in smaller population sizes and reduced levels of genetic diversity. For example, forestry practices and anthropogenic disturbances are both cited as factors fragmenting the once extensive range of Gopherus polyphemus. One localized, but extreme, source of fragmentation was the impoundment of the Chattahoochee River in 1963 to form Walter F. George Reservoir along the border of Georgia and Alabama. The formation of this reservoir isolated populations of G. polyphemus on two newly created islands providing a natural laboratory to explore the demographics and genetic effects of fragmentation on a long-lived species. These populations were first surveyed in 1984 and, 21 years later, we revisited them to collect demographic data and tissue samples for genetic analysis. We genotyped all individuals for 10 microsatellite loci, and we tested these data for bottlenecks and compared them to levels of genetic diversity for populations from other portions of the range. We found 45 and two individuals on the larger and smaller islands, respectively. On the large island, however, the population size was identical to the 1984 survey. Only the population structure based on estimated age differed between the 1984 and 2004 surveys, while population size structure based on carapace length, sex ratio, and sex-specific growth rates did not differ. The population of the large island showed genetic evidence of a past bottleneck. The genetic diversity indices from the population of the large island, however, were comparable to or greater than those found at mainland sites, in particular from western populations.

Herpetological Conservation and Biology↗
USGS2010

Unbiased survival estimates and evidence for skipped breeding opportunities in females

1.  Estimates of demographic parameters for females, in many organisms, are sparse. This is particularly worrisome as more and more species are faced with high extinction probabilities and conservation increasingly depends on actions dictated by complex predictive models that require accurate estimates of demographic parameters for each sex and species. 2.  This study assesses demographic parameters, specifically temporary emigration and survival, for females, a class that has been difficult to investigate historically because of lack of data. Amphibians provide a particularly good example because there is global concern about amphibian decline; yet most demographic parameter estimates are based on data from males, which we show can lead to erroneous conclusions. 3.  We use 10 years of capture–recapture data from boreal toads ( Bufo boreas ) and the multi-state open robust design model to provide evidence for the occurrence of skipped breeding opportunities (i.e. temporary emigration) in females. This is the first time that the open robust design model has been applied to an analysis of an amphibian population that we are aware of. 4.  We determined that the transition from breeder to non-breeder is obligate and the probability of a non-breeder remaining a non-breeder is 64%; thus, temporary emigration is first-order Markovian in nature, where breeding probability is dependent on the previous year’s activity, i.e. if a female did not breed in year one, there is a 36% chance that she will breed in year two. With temporary emigration accounted for, we estimated between-year female survival at 87%. 5.  Establishing the occurrence of temporary emigration not only reduces bias in estimates of survival probabilities but also provides information about expected breeding attempts by females, a critical element in understanding the ecology of an organism and the impacts of outside stressors and conservation actions.

Methods in Ecology and Evolution↗
USGS2010

Environmental conditions affecting the efficiency and efficacy of piscicides for use in nonnative fish eradication

Conservation of native fish is a pressing issue for fisheries managers. Conservation efforts often require eliminating threats posed by nonnative fish by eradicating them with piscicides. The piscicides rotenone and antimycin are used for eradication but their application is often inefficient or ineffective. My goal was to increase the efficiency and efficacy of nonnative fish eradication using piscicides. I identified environmental conditions affecting piscicide application, researched methods to overcome these problems, and provided tools that piscicide applicators can use to make piscicide application more efficient and effective. Rotenone and antimycin were exposed to varying levels of sunlight, turbulence, and dissolved organic matter (DOM) to determine the effect these environmental conditions have on piscicides. Bioassay fish were used to determine the toxicity of the piscicides. Sunlight and turbulence affected rotenone and antimycin but DOM did not. Increasing the concentration of chemical can increase the resistance to the effects of these environmental conditions; however, the effects of these conditions are considerable in natural settings. Observations of bioassay fish in stream applications of rotenone were used to develop a statistical model to predict the persistence of the piscicide. The model can be used to predict rotenone persistence in small montane streams and to estimate where rotenone concentrations need to be fortified. I measured the mixing rate of a chemical plume in different channel morphologies and at center or edge applications. Center application had a significantly shorter mixing distance than edge application, but mixing distance was not different among meandering, straight, and riffle/pool morphologies. Application of my findings will increase the efficiency and efficacy of native fish conservation using piscicides.

Thesis↗
USGS2024

2023-2024 Coastal sage scrub and chaparral community monitoring for western San Diego County

Western San Diego County is dominated by shrublands supporting biologically diverse native plant and animal communities. Widespread urbanization has led to regional habitat loss and fragmentation, and many species in these shrubland communities are rare, threatened, or endangered. Large-scale, multiple-species conservation planning has resulted in a regional preserve system that focuses on these shrubland communities. Several large-scale threats are leading to type conversion from shrub-dominated to non-native invasive annual grass-dominated vegetation. To understand the changes that are occurring to native shrublands, we have developed a vegetation monitoring program with several components at multiple spatial scales, focused on quantifying coastal sage scrub (CSS) and chaparral vegetation community characteristics. Several drivers of change associated with type conversion of native shrubland to non-native annual grassland have been identified by previous research including increasing fire frequency, nitrogen deposition from air pollution, and prolonged and intense drought associated with changing climate. Loss of ecological integrity indices have been proposed as useful measures of the threat of degradation and type conversion of shrublands in San Diego County. For this study, ecological integrity is defined as a system’s ability to maintain species’ relationships and functions comparable to natural habitat in the region. Previous studies have identified the percent cover of invasive non-native annual grasses as a proxy for overall ecological degradation (loss of integrity) that is consistent across native taxonomic groups. Increased cover of non-native grass is associated with lower integrity of the shrubland vegetation community as shrub-associated plant and animal species are replaced by species preferring grassy and disturbed habitats. The objectives of this CSS and chaparral vegetation community monitoring plan are to: 1) Determine the distribution, composition, structure, and integrity of CSS and chaparral vegetation communities on conserved lands in western San Diego County, 2) Identify whether these attributes of the vegetation communities are changing over time, and 3) Evaluate relationships of known drivers of change (threats) and environmental factors in association with changes in vegetation community attributes. The CSS and chaparral vegetation community monitoring program is divided into four components: 1) vegetation mapping, 2) GIS/remote sensing office analysis of landscape-scale data, 3) permanent field plots using Unmanned Aerial Systems (UAS) and field data collections, and 4) animal and target species surveys and rapid assessment protocols. The first component, which is not detailed in this vegetation monitoring plan, aims to map vegetation communities every 10-15 years based on a classification developed for western San Diego County. High resolution aerial imagery will be used to update the 2012 vegetation map and expand it across the entire study area. The second component uses remote sensing models to annually track ecological integrity of shrublands across the study area and will include a map of areas of change and areas of stability over several decades. These landscape-scale integrity classifications will be used to analyze ecological processes, threats, and abiotic factors relative to changes to shrubland ecological integrity over time and space. The third component includes field surveys of 100 permanent plots across areas historically mapped as shrublands. Surveys in the 1930s mapped vegetation types using plot data. By using this historical classification map, we included areas that have already type-converted from shrubland to non-native annual grassland. The plots were split between CSS (55 plots) and chaparral (45 plots) and stratified into four geographical eco-subregions to guarantee coverage over small patches of habitat along the heavily developed coast. Surveys will include the collection of UAS imagery at a very high resolution. Species-level identifications will be made from the imagery based on a plant list compiled of all species detected in the plot during a thorough field survey by botanists, combined with geo-referenced samples of plant species locations. In addition, herbaceous cover will be estimated in the field using nine 1-m diameter circles (one per subplot) to obtain ocular estimates of cover for each plant species within the circle frame. Soil samples will be collected and analyzed for important element compositions. These data will be analyzed to evaluate plot-level ecological integrity based on species composition and cover. Repeated monitoring will allow evaluation of changes in vegetation attributes over time with known drivers or threats and other environmental factors. In addition, analyses will focus on indicator species and various measures of biological diversity for the vegetation communities. Finally, animal species and rare plants will be assessed using either taxa-based rapid assessment protocols or specialized species-specific protocols for rarer species. The purpose of these assessments is to document the status, habitat, and threat covariates of specific species and confirm the species composition and diversity of animal taxonomic groups (e.g., pollinators). Diversity and abundance of animal species at vegetation plots will be used to refine measures and thresholds of ecological integrity. Rapid assessment protocols for animal taxonomic groups can include multiple detection methods such as, camera traps, cover boards, and bird point counts. Pollinators will be monitored at plots using a protocol currently being developed in conjunction with but separately from this plan. Target rare plant species will be monitored using the regional Inspect and Manage (IMG) protocol that measures the status of rare plant occurrences and habitat and threat covariates over time. Species-specific animal survey methods will be refined as these species are prioritized for future monitoring. The goal of this monitoring program is to classify CSS and chaparral vegetation community integrity, identify areas of degradation across western San Diego County, and characterize drivers, and environmental factors associated with loss of ecological integrity. A combination of vegetation mapping, landscape-scale remote sensing, and field plots will be used to address all the aspects of our research questions. Data compiled and collected will be available to conservation partners to help inform future management decisions.

California↗
USGS2026

Using demographic estimation and power analysis to inform monitoring efforts and detect declines in freshwater mussels

Population assessments can be used to determine species' viability and inform conservation efforts; however, obtaining sufficient data quality and quantity can be challenging when monitoring resources are scarce. Brook Floater ( Alasmidonta varicosa ) is a freshwater mussel that is state listed in the United States as endangered or threatened in 10 of the 14 states it occupies. Despite the conservation concern, little is known about the size and demographics of most Brook Floater populations. The primary objective of this study was to determine demographic parameters (abundance and survival) for Brook Floater at five newly established, long-term monitoring sites in Maine and Massachusetts, United States. A secondary objective was to evaluate tradeoffs of potential future sampling strategies by state natural resource agencies at these monitoring sites. Mussels were sampled at each site using visual and tactile snorkel surveys twice each summer during 2018–2020 and marked with alphanumeric tags to distinguish individuals. We considered a candidate set of capture-recapture models that allowed parameters to vary depending on year, sampling occasion, and individual shell length. Abundance estimates among sites varied widely, from 29 individuals (range: 12–119) in the Nissitissit River in Massachusetts to 311 individuals (range: 307–320) in the East Branch of the Pleasant River in Maine. Annual survival was high across all sites (0.87–0.96). Given the differences in capture probability and abundance between states, we determined the statistical power available to detect given population declines in Massachusetts and explored alternative population abundance estimators in Maine. The power analysis suggested that the existing sampling regimen in Maine is likely adequate while sampling in Massachusetts may require additional occasions each year to realistically detect population declines with sufficient statistical power. This analysis demonstrates the utility of considering sampling frequency when designing capture-recapture studies for freshwater mussels and other taxa.

Maine, Massachusetts↗
USGS2018

Living on the edge: Opportunities for Amur tiger recovery in China

Sporadic sightings of the endangered Amur tiger Panthera tigris altaica along the China-Russia border during the late 1990s sparked efforts to expand this subspecies distribution and abundance by restoring potentially suitable habitats in the Changbai Mountains. To guide science-based recovery efforts and provide a baseline for future monitoring of this border population, empirical, quantitative information is needed on what resources and management practices promote or limit the occurrence of tigers in the region. We established a large-scale field camera-trapping network to estimate tiger density, survival and recruitment in the Hunchun Nature Reserve and the surrounding area using an open population spatially explicit capture-recapture model. We then fitted an occupancy model that accounted for detectability and spatial autocorrelation to assess the relative influence of habitat, major prey, disturbance and management on tiger habitat use patterns. Our results show that the ranges of most tigers abut the border with Russia. Tiger densities ranged between 0.20 and 0.27 individuals/100 km2 over the study area; in the Hunchun Nature Reserve, the tiger density was three times higher than that in the surrounding inland forested area. Tiger occupancy was strongly negatively related to heavy cattle grazing, human settlements and roads and was positively associated with sika deer abundance and vegetation cover. These findings can help to identify the drivers of tiger declines and dispersal limits and refine strategies for tiger conservation in the human-dominated transboundary landscape. Progressively alleviating the impacts of cattle and human disturbances on the forest, and simultaneously addressing the economic needs of local communities, should be key priority actions to increase tiger populations. The long-term goal is to expand tiger distribution by improving habitats for large ungulates.

Jilin Province↗
USGS1980

Geohydrology and model analysis for water-supply management in a small area of west-central Kansas

The Ogallala Formation in the intensive-study area, an area of 12 square miles in northeastern Wichita County, west-central Kansas, has had a substantial decrease in saturated thickness since the development of irrigation. The annual water-level decline during 1950-78 ranged from 1.08 to 2.22 feet per year. The hydrologic system was investigated to study methods of conserving the remaining ground water in the intensive-study area. During 1977-78, the average annual ground-water withdrawal was 7,400 acre-feet, and the water-level decline ranged from 0.91 to 5.05 feet. The saturated thickness in 1977 ranged from about 40 to 80 feet, and aquifer storage was about 61,000 acre-feet. Natural recharge is estimated to be 0.28 inch per year. Projections from a digital ground-water flow model were used to indicate the additional water-level decline that might occur from 1978 to 1988 if pumpages in the 480-square-mile model area were one-half, equal to, or double the 1977 pumpage rate. The additional water-level declines in the intensive-study area would range from 5 to 15 feet if pumpages were one-half, 15 to 30 feet if pumpages were equal to, and 25 to 40 feet if pumpages were double the 1977 rate. Projections also were used to indicate the water-level declines if pumpages in the model area were equal to the 1977 rate and if pumpages in the intensive-study area were one-half or double the 1977 rate. Additional water-level declines in the intensive-study area would range from 10 to 20 feet if pumpages were one-half and from 20 to 25 feet if pumpages were doubled. Decreased pumpage in the area could reduce the water-level declines, but continued pumpage in adjacent areas would cause declines to be greater near the edge than near the center. The digital model was more sensitive to changes in pumpage than to changes in hydraulic conductivity, specific yield, and recharge.

Kansas↗
USGS2018

Genetic integrity, population status, and long-term viability of isolated populations of shoal bass in the upper Chattahoochee River basin, Georgia

This report characterizes the status of multiple isolated Shoal Bass ( Micropterus cataractae ) populations in the upper Chattahoochee River basin (UCRB), Georgia. The Shoal Bass, a sport fish endemic to the Apalachicola-Chattahoochee-Flint River (ACF) basin, is a fluvial-specialist species considered vulnerable to local extirpations and extinction due to habitat fragmentation and introgression with non-native congeners. Perhaps one of the most isolated populations of Shoal Bass exists in a 2-km reach of Big Creek, a tributary of the Chattahoochee River located near Roswell, Georgia. Big Creek is partially contained within the Chattahoochee River National Recreation Area, although the Big Creek watershed is riddled with urban land cover. Roswell Mill Dam limits the upstream extent of the Shoal Bass population at Big Creek, and the downstream extent is presumably limited to the confluence of Big Creek and the Chattahoochee River. This reach of the Chattahoochee River is thermally depressed because of coldwater releases from Lake Lanier, and is considered unsuitable for Shoal Bass. Herein, we examine the genetic integrity, population status, and long-term viability of the Shoal Bass population in Big Creek. We also examine two additional Shoal Bass populations that occur in the UCRB, specifically the Chestatee River and the upper Chattahoochee River, both of which are impounded at Lake Lanier. Together, the Shoal Bass inhabiting these three stream systems comprise a distinct genetic stock of Shoal Bass (Taylor 2017), underscoring the importance of conserving these populations towards maintaining the overall diversity and adaptive potential of the species. We assessed genetic diversity and estimated effective population sizes within these three rivers by genotyping fish with 16 microsatellite DNA markers. Results demonstrated that the Shoal Bass population in Big Creek has experienced high rates of introgression with non-native Smallmouth Bass (M. dolomieu), purportedly introduced into the Chattahoochee River in the past 10-15 years. Alarmingly, only 24% (15 of 62) of putative Shoal Bass collected from Big Creek were genetically pure Shoal Bass, whereas the majority of fish were first-filial (F1) generation hybrids and unidirectional backcrosses towards Shoal Bass. Fleeting opportunity may remain to conserve the native genome of the Shoal Bass population in Big Creek. High hybridization rates prevented genetic diversity analysis for the Big Creek population. Shoal Bass populations in the Chestatee and Chattahoochee rivers displayed levels of genetic diversity similar to populations that persist in other rivers in the ACF basin, namely the Flint and Chipola rivers. Effective population sizes of 93.8– 197.4 for the Chestatee and Chattahoochee rivers (combined) suggest that the conservation status of these populations is stable for the short-term, but may be at risk of losing genetic diversity and adaptive potential in the long-term. To estimate age and mortality of the three populations, we used fish scales and capture-markrecapture (CMR) as complementary, non-lethal methods for age estimation. Estimated ages of phenotypic Shoal Bass ranged from 1-12 years in all three populations, demonstrating increased longevity compared to populations elsewhere within the native range. Catch-curve estimates of annual mortality ranged from 18.4-23.7%, which are markedly lower than those observed in other Shoal Bass populations in the ACF basin. These differences in life-history characteristics underscore the need for the development of population-specific management and conservation strategies for Shoal Bass in the UCRB. The lowest recruitment variability (i.e., the variation in year-class strength) was observed in the Chestatee River, a forested watershed, whereas the highest variability was observed in Big Creek, an urbanized watershed. Recruitment strength in Big Creek was negatively influenced by discharge variability in the summer months, suggesting that flashy, sediment-laden flows hinder survival of recently hatched young. Other statistically significant models from Big Creek and the Chattahoochee River indicated that over-winter survival could be an important pinch-point for recruitment in UCRB populations. A multi-agency sampling effort was conducted from May 2013-May 2016 to estimate the population size of Shoal Bass occupying the 1-km of wadeable shoal habitats in Big Creek. Using CMR models, we estimated that approximately 219-348 Shoal Bass (≥ 70 mm total length) occupied the area throughout the duration of our study. These estimates largely reflect abundance of individuals aged 0-2 years, as only 9% (36 of 408) tagged fish were aged ≥ 7 years. Local abundance appeared similar to that reported for a population that inhabited Little Uchee Creek, a similar-sized tributary of the Chattahoochee River, prior to its recent functional extirpation. The low abundance of large, adult Shoal Bass further suggests the long-term viability of the Big Creek population may be in jeopardy. Perhaps most importantly, CMR estimates reflect abundance of phenotypic Shoal Bass – genetic analyses suggest the abundance of pure Shoal Bass could be an order of magnitude smaller. To evaluate the potential for adult Shoal Bass to emigrate from Big Creek into the mainstem Chattahoochee River, we tagged eight adults with acoustic telemetry tags and assessed their seasonal residency at two stationary receiver locations located in increasing proximity to the confluence with the Chattahoochee River. Fish took up residency near the confluence during the fall and winter months, during which time water temperatures in Big Creek were periodically colder than the Chattahoochee River. Although we were unable to document emigration, we conclude that the potential for emigration is highest during the winter months when the Chattahoochee River may be warmer than Big Creek. Two of the tagged fish were caught by anglers near the confluence, suggesting that angling pressure at Big Creek may be higher than previously suspected. Overall, this study observed unique life-history characteristics and characterized the population status of multiple Shoal Bass populations in the UCRB. Populations in the Chestatee and Chattahoochee rivers appear stable at present and likely represent the last remaining strongholds for pure Shoal Bass in the UCRB. Efforts to preserve forested watershed conditions, natural hydrology, and shoal habitats would contribute to the long-term persistence of Shoal Bass populations in these two rivers. Additionally, the detection of non-native Alabama Bass and their associated hybrids in both rivers is cause for concern. Diligent monitoring of hybridization dynamics between Alabama Bass and Shoal Bass is warranted, along with an assessment of Alabama Bass invasion extent upstream of Lake Lanier. The Shoal Bass population in Big Creek is threatened by elevated levels of introgression with nonnative Smallmouth Bass, recruitment variability, low abundance of adults, and isolation from other populations. Conservation intervention is urgently needed to restore and preserve this genetically distinct population, which would contribute to preservation of range wide genetic diversity and adaptability of the species. Additionally, an urban sport fishery for Shoal Bass at Big Creek has the potential to serve as a tool for increasing public awareness, engagement, and support of Shoal Bass conservation efforts in the UCRB. We suggest strategies for conservation of the remnant shoal habitats and Shoal Bass population in Big Creek, including potential development of a supplemental stocking program, selective removal of non-native congeners, and delivery of environmental education programs that could bolster awareness and appreciation.

Georgia↗
USGS2023

Environmental transmission of Pseudogymnoascus destructans to hibernating little brown bats

Pathogens with persistent environmental stages can have devastating effects on wildlife communities. White-nose syndrome (WNS), caused by the fungus Pseudogymnoascus destructans, has caused widespread declines in bat populations of North America. In 2009, during the early stages of the WNS investigation and before molecular techniques had been developed to readily detect P. destructans in environmental samples, we initiated this study to assess whether P. destructans can persist in the hibernaculum environment in the absence of its conclusive bat host and cause infections in naive bats. We transferred little brown bats ( Myotis lucifugus ) from an unaffected winter colony in northwest Wisconsin to two P. destructans contaminated hibernacula in Vermont where native bats had been excluded . Infection with P. destructans was apparent on some bats within 8 weeks following the introduction of unexposed bats to these environments, and mortality from WNS was confirmed by histopathology at both sites 14 weeks following introduction. These results indicate that environmental exposure to P. destructans is sufficient to cause the infection and mortality associated with WNS in naive bats, which increases the probability of winter colony extirpation and complicates conservation efforts.

Nature↗
USGS2010

Faunal assemblages and multi-scale habitat patterns in headwater tributaries of the South Fork Trinity River - an unregulated river embedded within a multiple-use landscape

Headwaters can represent 80% of stream kilometers in a watershed, and they also have unique physical and biological properties that have only recently been recognized for their importance in sustaining healthy functioning stream networks and their ecological services. We sampled 60 headwater tributaries in the South Fork Trinity River, a 2,430 km2, mostly forested, multiple-use watershed in northwestern California. Our objectives were: (1) to differentiate unique headwater types using 69 abiotic and vegetation variables measured at three spatial scales, and then to reduce these to informative subsets; (2) determine if distinct biota occupied the different tributary types; (3) determine the environmental attributes associated with the presence and abundance of these biotic assemblages; and (4) using niche modeling, determine key attribute thresholds to illustrate how these biota could be employed as metrics of system integrity and ecological services. Several taxa were sufficiently abundant and widespread to use as bio-indicators: the presence and abundance of steelhead trout (Oncorhynchus mykiss), herpetofauna (reptile and amphibian) species richness, and signal crayfish (Pacifastacus leniusculus) represented different trophic positions, value as commercial resources (steelhead), sensitivity to environmental stress (amphibians), and indicators of biodiversity (herpetofauna species richness). Herpetofauna species richness did not differ, but abundances of steelhead trout, signal crayfish, and amphibian richness all differed significantly among tributary types. Niche models indicated that distribution and abundance patterns in both riparian and aquatic environments were associated with physical and structural attributes at multiple spatial scales, both within and around reaches. The bio-indicators responded to unique sets of attributes, reflecting the high environmental heterogeneity in headwater tributaries across this large watershed. These niche attributes represented a wide range of headwater environments, indicating responses to a number of natural and anthropogenic conditions, and demonstrated the value of using a suite of bio-indicators to elucidate watershed conditions, and to examine numerous disturbances that may influence ecological integrity.

Animal Biodiversity and Conservation↗
USGS2011

U.S. Geological Survey Science for the Wyoming Landscape Conservation Initiative-2010 Annual Report

This is the third report produced by the U.S. Geological Survey (USGS) for the Wyoming Landscape Conservation Initiative (WLCI) to detail annual work activities. The first report described activities for 2007 and 2008, and the second report covered work activities for FY09. This third report covers work activities conducted in FY2010, and it continues the 2009 approach of reporting on all the individual activities to help give WLCI partners and other readers the full scope of what has been accomplished. New in this year's report is an additional section for each work activity that outlines the work planned for the following fiscal year. In FY2010, there were 35 ongoing/expanded, completed, or new projects conducted under the five major multi-disciplinary science and technical-assistance activities: (1) Baseline Synthesis; (2) Targeted Monitoring and Research; (3) Data and Information Management; (4) Integration and Coordination; and (5) Decisionmaking and Evaluation. The three new work activities were to (1) compile existing water data for the entire WLCI region and (2) develop regional curves (statistical models) for relating bankfull-channel geometry and discharge to drainages in the WLCI region, both of which will help guide long-term monitoring of water resources; and (3) initiate a groundwater-monitoring network to evaluate potential effects of energy-development activities on groundwater quality where groundwater is an important source of public/private water supplies. Results of the FY2009 work to develop methods for assessing soil organic matter and mercury indicated that selenium and arsenic levels may be elevated in the Muddy Creek Basin; thus, the focus of that activity was shifted in FY2010 to evaluate biogeochemical cycling of elements in the basin. In FY2010, two ongoing activities were expanded with the addition of more sampling plots: (a) the study of how greater sage-grouse (Centrocercus urophasianus) use vegetation-treatment areas (sites added to the Moxa Arch Natural Gas Development area) and (2) the study of cheatgrass (Bromus tectorum) occurrence in burn treatments of the Little Mountain Ecosystem. The activity that entails evaluating relationships between ungulate herbivory and fire on aspen (Populus tremuloides) recruitment also was expanded to include relationships between stand characteristics of and herbivory on aspen in various ecohydrological settings. The USGS continued compiling data and developing geospatial products from all of its WLCI activities to support (1) ranking and prioritizing of proposed conservation projects, (2) developing the WLCI Integrated Assessment, and (3) developing the WLCI 5-year Conservation Action Plan. Two activities were completed in FY2010: (1) the conceptual modeling and indicator selection for monitoring resource conditions across the WLCI region, and (2) the literature review on effects of oil and gas development in western regions of the United States, both of which are in the last stages of publication.

Open-File Report↗
USGS2015

Sea-level rise and refuge habitats for tidal marsh species: Can artificial islands save the California Ridgway's rail?

Terrestrial species living in intertidal habitats experience refuge limitation during periods of tidal inundation, which may be exacerbated by seasonal variation in vegetation structure, tidal cycles , and land-use change. Sea-level rise projections indicate the severity of refuge limitation may increase. Artificial habitats that provide escape cover during tidal inundation have been proposed as a temporary solution to alleviate these limitations. We tested for evidence of refuge habitat limitation in a population of endangered California Ridgway's rail ( Rallus obsoletus obsoletus ; hereafter California rail) through use of artificial floating island habitats provided during two winters. Previous studies demonstrated that California rail mortality was especially high during the winter and periods of increased tidal inundation, suggesting that tidal refuge habitat is critical to survival. In our study, California rail regularly used artificial islands during higher tides and daylight hours. When tide levels inundated the marsh plain, use of artificial islands was at least 300 times more frequent than would be expected if California rails used artificial habitats proportional to their availability (0.016%). Probability of use varied among islands, and low levels of use were observed at night. These patterns may result from anti-predator behaviors and heterogeneity in either rail density or availability of natural refuges. Endemic saltmarsh species are increasingly at risk from habitat change resulting from sea-level rise and development of adjacent uplands. Escape cover during tidal inundation may need to be supplemented if species are to survive. Artificial habitats may provide effective short-term mitigation for habitat change and sea-level rise in tidal marsh environments, particularly for conservation-reliant species such as California rails.

California↗
USGS2023

Landscape transcriptomics as a tool for addressing global change effects across diverse species

Landscape transcriptomics is an emerging field studying how genome-wide expression patterns reflect dynamic landscape-scale environmental drivers, including habitat, weather, climate, and contaminants, and the subsequent effects on organismal function. This field is benefitting from advancing and increasingly accessible molecular technologies, which in turn are allowing the necessary characterization of transcriptomes from wild individuals distributed across natural landscapes. This research is especially important given the rapid pace of anthropogenic environmental change and potential impacts that span levels of biological organization. We discuss three major themes in landscape transcriptomic research: connecting transcriptome variation across landscapes to environmental variation, generating and testing hypotheses about the mechanisms and evolution of transcriptomic responses to the environment, and applying this knowledge to species conservation and management. We discuss challenges associated with this approach and suggest potential solutions. We conclude that landscape transcriptomics has great promise for addressing fundamental questions in organismal biology, ecology, and evolution, while providing tools needed for conservation and management of species.

Molecular Ecology Resources↗
USGS2025

Evidence for size‐based predation risk during Atlantic salmon (Salmo salar) smolt migration.

Hatchery supplementation is frequently employed during the conservation and recovery of imperilled salmon populations. At the smolt stage, hatchery rearing practices often produce individuals that are larger than wild conspecifics. Under this ‘bigger is better’ strategy, it is assumed that larger fish are less susceptible to predation during migration. We tested this hypothesis on hatchery-reared Atlantic salmon ( Salmo salar ) smolts with fork lengths representative of those of natural and hatchery origins, allowing us to isolate the influence of size from rearing history. From May to June 2023 we characterized predation risk for acoustic-tagged ( n = 50) and tethered ( n = 192) smolts of various sizes through a mostly free-flowing section of the Penobscot River, Maine, USA. Across both methods, more than 50% of smolts were predated, with the majority of predation events being attributed to smallmouth bass ( Micropterus dolomieu ). Tethered smolts of all sizes experienced similar predation risk. In the acoustic telemetry component of this study, smaller, wild-sized smolts incurred greater overall mortality relative to standard hatchery sizes (95% vs. 75%), the majority of which occurred within 3 km of the release site. Collectively, these results allude to a strong predation influence imposed by smallmouth bass on smolts in freshwater sections of the Penobscot River and small-bodied migrants may incur greater predation risk, particularly near stocking sites.

Journal of Fish Biology↗
USGS2007

Development of an Impervious-Surface Database for the Little Blackwater River Watershed, Dorchester County, Maryland

Many agricultural and forested areas in proximity to National Wildlife Refuges (NWR) are under increasing economic pressure for commercial or residential development. The upper portion of the Little Blackwater River watershed - a 27 square mile area within largely low-lying Dorchester County, Maryland, on the eastern shore of the Chesapeake Bay - is important to the U.S. Fish and Wildlife Service (USFWS) because it flows toward the Blackwater National Wildlife Refuge (BNWR), and developmental impacts of areas upstream from the BNWR are unknown. One of the primary concerns for the Refuge is how storm-water runoff may affect living resources downstream. The Egypt Road project (fig. 1), for which approximately 600 residential units have been approved, has the potential to markedly change the land use and land cover on the west bank of the Little Blackwater River. In an effort to limit anticipated impacts, the Maryland Department of Natural Resources (Maryland DNR) recently decided to purchase some of the lands previously slated for development. Local topography, a high water table (typically 1 foot or less below the land surface), and hydric soils present a challenge for the best management of storm-water flow from developed surfaces. A spatial data coordination group was formed by the Dorchester County Soil and Conservation District to collect data to aid decisionmakers in watershed management and on the possible impacts of development on this watershed. Determination of streamflow combined with land cover and impervious-surface baselines will allow linking of hydrologic and geologic factors that influence the land surface. This baseline information will help planners, refuge managers, and developers discuss issues and formulate best management practices to mitigate development impacts on the refuge. In consultation with the Eastern Region Geospatial Information Office, the dataset selected to be that baseline land cover source was the June-July 2005 National Agricultural Imagery Program (NAIP) 1-meter resolution orthoimagery of Maryland. This publicly available, statewide dataset provided imagery corresponding to the closest in time to the installation of a U.S. Geological Survey (USGS) Water Resources Discipline gaging station on the Little Blackwater River. It also captures land cover status just before major residential development occurs. This document describes the process used to create a database of impervious surfaces for the Little Blackwater watershed.

Open-File Report↗