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At least 1,585 records · Page 88Linked to original sources

USGS2013

Abundance: Population size and density estimation

Estimates of population size (total number of individuals) or density (number of individuals per unit area) are some of the most basic requirements for wildlife research and management. This article provides a brief overview of approaches for wildlife population estimation. These include habitat‐based approaches such as quadrat, line intercept, distance, and repeated count methods, as well as animal‐based approaches such as capture–recapture and harvest methods. In contrast to methods that only index changes in these parameters, estimates of size or density must account for the probability that an individual will be included in the sample used for estimation. The essential differences in the approaches are in how the samples are obtained and how the sampling probabilities are estimated.

Book chapter↗

USGS2013

Capture-recapture methodology

Capture-recapture methods were initially developed to estimate human population abundance, but since that time have seen widespread use for fish and wildlife populations to estimate and model various parameters of population, metapopulation, and disease dynamics. Repeated sampling of marked animals provides information for estimating abundance and tracking the fate of individuals in the face of imperfect detection. Mark types have evolved from clipping or tagging to use of noninvasive methods such as photography of natural markings and DNA collection from feces. Survival estimation has been emphasized more recently as have transition probabilities between life history states and/or geographical locations, even where some states are unobservable or uncertain. Sophisticated software has been developed to handle highly parameterized models, including environmental and individual covariates, to conduct model selection, and to employ various estimation approaches such as maximum likelihood and Bayesian approaches. With these user-friendly tools, complex statistical models for studying population dynamics have been made available to ecologists. The future will include a continuing trend toward integrating data types, both for tagged and untagged individuals, to produce more precise and robust population models.

Book chapter↗

USGS2008

Avian cholera

This chapter contains section titled: Introduction Synonyms History Distribution Host Range Etiology Epizootiology Clinical Signs Pathogenesis Pathology Diagnosis Immunity Public Health Concerns Domestic Animal Health Concerns Wildlife Population Impacts Treatment and Control Management Implications Unpublished Data Literature Cited

Book chapter↗

USGS2008

Avian tuberculosis

Book chapter↗

USGS2008

Avian chlamydiosis

This chapter contains section titled: Introduction Synonyms History Distribution and Host Range Epizootiology Clinical Signs Pathogenesis Pathology Diagnosis Immunity Public Health Concerns Domestic Animal Health Concerns Wildlife Population Impacts Treatment and Control Management Implications Unpublished Data Literature Cited

Book chapter↗

USGS2008

Avian botulism

Book chapter↗

USGS2008

Avian herpesviruses

This chapter contains section titled: Introduction Synonyms History Distribution Host Range Etiology Epizootiology Clinical Signs Pathology Diagnosis Immunity Public Health Concerns Domestic Animal Health Concerns Wildlife Population Impacts Treatment and Control Management Implications Acknowlegements Literature Cited

Book chapter↗

USGS2008

Duck plague (Duck virus enteritis)

This chapter contains section titled: Introduction Synonyms History and Distribution Host Range Etiology Epizootiology Clinical Signs Pathogenesis Pathology Diagnosis Immunity Public Health Concerns Domestic Animal Health Concerns Wildlife Population Impacts Treatment and Control Management Implications Unpublished Data/Personal Communications Literature Cited

Book chapter↗

USGS2008

Avian pox

Book chapter↗

USGS2008

Orthoreoviruses

This chapter contains section titled: Introduction History Distribution Host Range Etiology Epizootiology Clinical Signs and Pathology Diagnosis Immunity Public Health Concerns Domestic Animal Health Concerns Treatment and Control Management Implications Literature Cited

Book chapter↗

USGS2009

Aspects and implications of bear reintroduction: Chapter 6

Bear reintroduction has been practiced worldwide with varying degrees of success. Homing is a significant issue for American black bears, Ursus americanus , and winter-release techniques of females with cubs have been successfully used to improve settling rates and survival. Reintroduction success for all bear species appears to be positively correlated with translocation distance, and success is greater for subadults and females. Animals bred or held in captivity are usually poor candidates for reintroduction, but that may be the only option for some rare species. Habitat analyses are routinely performed, but patch size and configuration may also be important considerations for choosing future reintroduction sites for these wide-ranging species. Biological realities aside, socio-political impediments are more difficult to overcome because of real and perceived threats to human safety and property. Poor public acceptance and understanding were the most important reasons for some bear reintroduction failures, and conservation biologists need to develop methods for identifying areas where co-habitation suitability is high. Citizen-led approaches to develop acceptable restoration strategies may be useful for gaining public acceptance of large-carnivore reintroduction efforts, and public acceptance is where the greatest challenge lies.

Book chapter↗

USGS2025

Performance comparisons for artificially propagated and wild Pacific lamprey juveniles and larvae

Artificially propagated Pacific lamprey ( Entosphenus tridentatus ) are produced for restoration and for use in dam passage studies to reduce the demand for wild fish. Such uses require that animals are representative of their wild counterparts. Previous work indicated that this is true for Pacific lamprey larvae and juveniles reared in the hatchery with respect to the length of sustained swimming. However, more subtle differences in behaviour and performance that lamprey need to survive have not been assessed. In this study, artificially propagated and wild fish were compared in laboratory tests under no-flow conditions to examine light avoidance, burrowing speed, burst swim speed, volitional routine swim speed and time to come to rest. Most larvae burrowed in less than a minute, and we found highly significant differences ( p < 0.001) between artificially propagated and wild larvae burrowing times, a critical escape behaviour. This could have implications for studies of larval entrainment at irrigation diversion canals or in turbine boils at dams. Interestingly, all of the wild juveniles tested came to rest quickly after introduction to the chamber (1.5 min), while artificially propagated lamprey swam robotically near the surface and 48% did not come to rest in the first 10 min (median time to rest = 9.5 min). In contrast, wild juveniles quickly (median = 1.47 min) sought areas near the tank bottom and attached strongly with their oral disc. Such behavioural differences could have important survival consequences for artificially propagated lamprey as they approach turbine intakes, bypass screens and irrigation diversion headgates. This study highlights the need to conduct behavioural assays that examine subtleties of fish behaviour that can be missed with traditional swim tunnel comparisons.

Aquaculture, Fish and Fisheries↗

USGS2005

Population trends of the mantled howler monkey groups of La Pacifica, Guanacaste, Costa Rica

A complete survey of La Pacifica in Guanacaste Province, Costa Rica was conducted in July 1984 in order to determine whether the howler ( Alouatta palliata ) population had declined since 1972 as a result of deforestation. During the 6-day survey, 257 howlers were located, representing 16 different social groupings and nine solitary animals. The total number of howlers, the number and location of groups, and the age-sex composition were very similar to a 1972–1976 survey of the same population. Age-sex composition of La Pacifica howler groups was similar to those of another population of mantled howlers in Costa Rica and of populations in Mexico and in Panama, although La Pacifica had a higher mean number of adult females per group. There was no evidence to support the hypothesis that the La Pacifica howler population has declined in recent times.

Guanacaste Province↗

USGS2006

Geographical patterns of human diet derived from stable-isotope analysis of fingernails

Carbon and nitrogen isotope ratios of human fingernails were measured in 490 individuals in the western US and 273 individuals in southeastern Brazil living in urban areas, and 53 individuals living in a moderately isolated area in the central Amazon region of Brazil and consuming mostly locally grown foods. In addition, we measured the carbon and nitrogen isotope ratios of common food items to assess the extent to which these isotopic signatures remain distinct for people eating both omnivorous and vegetarian diets and living in different parts of the world, and the extent to which dietary information can be interpreted from these analyses. Fingernail ??13C values (mean ?? standard deviation) were -15.4 ?? 1.0 and -18.8 ?? 0.8??? and ??15N values were 10.4 ?? 0.7 and 9.4 ?? 0.6??? for southeastern Brazil and western US populations, respectively. Despite opportunities for a "global supermarket" effect to swamp out carbon and nitrogen isotope ratios in these two urbanized regions of the world, differences in the fingernail isotope ratios between southeastern Brazil and western US populations persisted, and appeared to be more associated with regional agricultural and animal production practices. Omnivores and vegetarians from Brazil and the US were isotopically distinct, both within and between regions. In a comparison of fingernails of individuals from an urban city and isolated communities in the Amazonian region, the urban region was similar to southeastern Brazil, whereas individuals from isolated nonurban communities showed distinctive isotopic values consistent with their diets and with the isotopic values of local foods. Although there is a tendency for a "global supermarket" diet, carbon and nitrogen isotopes of human fingernails hold dietary information directly related to both food sources and dietary practices in a region. ?? 2006 Wiley-Liss, Inc.

American Journal of Physical Anthropology↗

USGS2017

Evaluation of physicochemical and physical habitat associations for Cambarus callainus (Big Sandy crayfish), an imperilled crayfish endemic to the Central Appalachians

1. Crayfish represent one of the most imperilled animal groups on the planet. Habitat degradation, destruction and fragmentation, introduction of invasive crayfishes, and a lack of applied biological information have all been identified as agents thwarting crayfish conservation. 2. Cambarus callainus was warranted federal protection by the United States Fish and Wildlife Service (USFWS) in April, 2016. As part of the USFWS listing procedure, a survey for C. callainus in the Big Sandy River catchment was conducted to determine points of occurrence with a secondary objective of determining reach level physical habitat and physicochemical correlates of C. callainus presence and absence. 3. At each site, physicochemical and physical habitat data were collected to determine the influence of abiotic covariates on the presence of C. callainus . Cambarus callainus presence or absence and associated site covariates were modelled using logistic regression. 4. Survey results recorded C. callainus at 39 sites in the Upper Levisa Fork (ULF) and Tug Fork (TF) drainages of the Big Sandy River; no C. callainus were collected in the Lower Levisa Fork (LLF). An additive effects model of physical habitat quality (Basin + Boulder presence/embeddedness) was the only model selected, supporting an association of C. callainus with slab boulders, open interstitial spaces, and moderate to no sedimentation. All sites lacking C. callainus were experiencing some degree of sedimentation. Physicochemical covariates were not supported by the data. 5. Results indicated that good quality habitat was lacking in the LLF, but was present in the ULF and TF catchments, with ULF supporting the most robust populations and most suitable habitat. Effective conservation for C. callainus should focus on efforts that limit sedimentation as well as restore good quality instream habitat in the greater Big Sandy catchment.

Kentucky, Virginia, West Virginia↗

USGS2019

Detecting the undetectable: Characterization, optimization, and validation of an eDNA detection assay for the federally endangered dwarf wedgemussel, Alasmidonta heterodon (Bivalvia: Unionoida)

Environmental (e)DNA assays are valuable tools for monitoring presence and distribution of cryptic species. Like many freshwater mussels, the dwarf wedgemussel, Alasmidonta heterodon numbers have dwindled and its range has diminished. As of its listing in 1993, only 10 to 20 locations were known to persist of the 70 Atlantic slope locations known historically. A qPCR assay to detect the presence of A. heterodon was developed that uses two probes to accommodate a single nucleotide polymorphism (SNP) in the probe binding site within the cytochrome oxidase I (COI) gene. This SNP defines northern and southern major phylogenetic lineages. The primers match exactly the previously determined cytochrome oxidase I sequences of twenty dwarf wedgemussel individuals representing Atlantic slope populations from North Carolina, Virginia, Maryland, New York, and New Hampshire. Other than for the qPCR assay described here these primers can be used for sequencing and/or metabarcoding to further delineate dwarf wedgemussel populations phylogenetically. A simple eDNA preparation method is introduced using flocculation to concentrate free DNA in solution as well as cellular material (including shed animal cells, bacteria, virus, and dissolved DNA). In addition to the specific application described here, the methodological approaches used in this study are widely applicable to the study of conservation issues including, but not limited to general aquatic biodiversity, phylogenetic studies, and detection of pathogenic microbes.

North Carolina, Virginia, Maryland, New York, New ↗

USGS2021

Genetic diversity of immature Kemp's ridley (Lepidochelys kempii) sea turtles from the northern Gulf of Mexico

The Kemp’s ridley ( Lepidochelys kempii ) is the world’s most endangered sea turtle species. Predominately nesting at only one beach in Mexico, this species declined to an estimated 300 females in the mid-1980s. Conservation efforts in the United States and Mexico, including a head start programme in southern Texas in which hatchlings were reared in captivity for several months before being released into the wild, resulted in the recovery of this species. Although genetic data have previously been used to assess the success of the head start programme and dispersal of individual adults, data on immature turtles sampled at foraging areas and adult females sampled at the main nesting beach in Mexico are lacking. Genetic characterization of immature individuals is important for understanding recruitment, survival, and population demography, while genetic data on individuals from Mexico are essential for understanding dispersal and overall genetic diversity in this species. To address these gaps, mitochondrial DNA data were collected from 106 immature individuals sampled at four different foraging sites in the northern Gulf of Mexico and from 18 nesting females at the primary nesting beach in Mexico. Two previously unknown mitochondrial DNA haplotypes were discovered among the immature individuals. Except for these two new haplotypes, the genetic diversity of immature individuals in the northern Gulf of Mexico closely corresponds to that of adults sampled in Mexico, which suggests that much of the diversity within the nesting population can be found among immature animals dispersing to foraging grounds, including locations in the northern Gulf of Mexico. Continued monitoring of the genetic variation of different life stages of this species across its distribution range will help assess the success of conservation programmes by ensuring the maintenance of genetic diversity and representation of this diversity across the species’ distribution range.

Aquatic Conservation: Marine and Freshwater Ecosys↗

USGS2023

Responses of native freshwater mussels to remediation to remove polychlorinated biphenyl-contaminated sediments in the upper Hudson River

The Hudson River, New York, was contaminated with polychlorinated biphenyls (PCBs) from two manufacturing plants over a period of approximately 30 years, and PCBs are still present in sediment and biota today. The river provides habitat for a variety of plants and animals, including native freshwater mussels. A remediation programme, consisting of dredging followed by the placement of backfilled sediment and/or a subaqueous cap, was initiated in 2009 to remove PCB-contaminated sediments, and managers were concerned about how remediation could affect the mussels. Quantitative surveys were conducted across nine reaches (pools) to estimate species composition, density, population size, population structure, and ecosystem services of mussel assemblages, pre- and post-remediation. Surveys were stratified into remediated areas (targeted for dredging) and non-remediated areas (not targeted for dredging). Pre-remediation, the river contained a low diversity, and high, but variable, density of mussels that were strongly dominated by Elliptio complanata . The presence of few fresh dead mussels indicates low natural mortality. Frequent recruitment by many species, varied length classes, and high biomass also support robust assemblages that perform important ecosystem services, such as biofiltration. Remedial activity removed most of the mussels and the associated services that they perform: their density was reduced by 83% and their filtration capacity was reduced by 93%, relative to non-remediated areas. Areas that were remediated were almost devoid of adult mussels, but the presence of small mussels indicates that natural recolonization is occurring. However, it is unknown whether these assemblages will persist. As mussels are generally long lived and slow growing, natural recovery is anticipated to be slow, in the order of decades.

New York↗