USGS Science⌕ Search

SEARCH · USGS Science

Results for “World & I”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,567 records · Page 87Linked to original sources
USGS2015

Enhanced microbial coalbed methane generation: A review of research, commercial activity, and remaining challenges

Coalbed methane (CBM) makes up a significant portion of the world’s natural gas resources. The discovery that approximately 20% of natural gas is microbial in origin has led to interest in microbially enhanced CBM (MECoM), which involves stimulating microorganisms to produce additional CBM from existing production wells. This paper reviews current laboratory and field research on understanding processes and reservoir conditions which are essential for microbial CBM generation, the progress of efforts to stimulate microbial methane generation in coal beds, and key remaining knowledge gaps. Research has been primarily focused on identifying microbial communities present in areas of CBM generation and attempting to determine their function, in-situ reservoir conditions that are most favorable for microbial CBM generation, and geochemical indicators of metabolic pathways of methanogenesis (i.e., acetoclastic or hydrogenotrophic methanogenesis). Meanwhile, researchers at universities, government agencies, and companies have focused on four primary MECoM strategies: 1) microbial stimulation (i.e., addition of nutrients to stimulate native microbes); 2) microbial augmentation (i.e., addition of microbes not native to or abundant in the reservoir of interest); 3) physically increasing microbial access to coal and distribution of amendments; and 4) chemically increasing the bioavailability of coal organics. Most companies interested in MECoM have pursued microbial stimulation: Luca Technologies, Inc., successfully completed a pilot scale field test of their stimulation strategy, while two others, Ciris Energy and Next Fuel, Inc., have undertaken smaller scale field tests. Several key knowledge gaps remain that need to be addressed before MECoM strategies can be implemented commercially. Little is known about the bacterial community responsible for coal biodegradation and how these microorganisms may be stimulated to enhance microbial methanogenesis. In addition, research is needed to understand what fraction of coal is available for biodegradation, and methods need to be developed to determine the extent of in-situ coal biodegradation by MECoM processes for monitoring changes to coal quality. Questions also remain about how well field-scale pilot tests will scale to commercial production, how often amendments will need to be added to maintain new methane generation, and how well MECoM strategies transfer between coal basins with different formation water geochemistries and coal ranks. Addressing these knowledge gaps will be key in determining the feasibility and commercial viability of MECoM technology.

International Journal of Coal Geology↗
USGS2016

Organic petrology and geochemistry of mudrocks from the lacustrine Lucaogou Formation, Santanghu Basin, northwest China: Application to lake basin evolution

Exploration for tight oil in the frontier Santanghu Basin of northwest China has resulted in recent commercial discoveries sourced from the lacustrine Upper Permian Lucaogou Formation, already considered a “world class source rock” in the Junggar Basin to the west. Here we apply an integrated analytical program to carbonate-dominated mudrocks from the Lucaogou Formation in Santanghu Basin to document the nature of organic matter (OM) in the context of an evolving lake system. The organic-rich samples (TOC 2.8–11.4 wt%; n = 10) were widely spaced from an ~ 200 m cored section, interpreted from textural and mineralogical evidence to document transition from a lower under-filled to an overlying balanced-filled lake. Organic matter is dominated by moderate to strongly fluorescent amorphous material with Type I geochemical signature (HI values 510–755; n = 10) occurring in a continuum from lamellar stringers, 10–20 μm thick, some ≥ 1 mm in length (possible microbial mat; preserved only in lower under-filled section) to finely-disseminated amorphous groundmass intimately intermixed with mineral matrix. Biomarkers for methanotrophs and photosynthetic cyanobacteria indicate a complex microbial consortium. A unicellular prasinophyte green alga(?), similar to Tasmanites in marine rocks, is present as discrete flattened discs 50–100 μm in diameter. Type III OM including vitrinite (some fluorescent) and inertinite also is abundant. Solid bitumen, indicating local kerogen conversion, fills voids and occurs throughout the cored section. Vitrinite reflectance values are 0.47–0.58%, consistent with strong OM fluorescence but may be “suppressed”. Other proxies, e.g., biomarker parameters, indicate the Lucaogou Formation is in the early oil window at this location. On average, slightly more amorphous OM and telalginite are present in the lower section, consistent with a shallow, stratified, saline environment with low sediment dilution. More inertinite is present in the upper section, indicating greater terrestrial influx and consistent with higher quartz and plagioclase content (dominantly authigenic chalcedony and albite). Laminated mudstones in the upper section indicate anoxia prevented bioturbation from benthic grazing, also indicating stratified water column conditions. A decrease upsection in authigenic dolomite with reciprocal increase of ankerite/siderite is consistent with decreasing salinity, as is an overall decrease in gammacerane index values. These observations suggest evolution from a shallow, stratified evaporative (saline) setting to a deeper, stratified freshwater basin with higher water input during Lucaogou deposition. The evolution from an under-filled to balance-filled lake in Santanghu Basin is similar to Lucaogou deposition in Junggar Basin, suggesting similar tectonic and climatic controls. Paleoclimate interpretations from other researchers in this area suggested an evolution from semi-arid to humid conditions during the Roadian; we interpret that the evolution from an under-filled to balanced-filled lake seen in our data is in response to climate change, and may represent increased groundwater delivery to the Santanghu Basin.

International Journal of Coal Geology↗
USGS2022

Pore systems and organic petrology of cretaceous Mowry and Niobrara source-rock reservoirs, Powder River Basin, Wyoming, USA

The Powder River Basin (PRB) is a world-class oil province, in large part thanks to contributions from premier source rocks, Cretaceous Mowry and Niobrara shales. Both formations are also unconventional reservoirs. A critical aspect of evaluating production potential and finding sweet spots is the nature of the pore systems in these fine-grained source-rock reservoirs. Variation by stratigraphic interval is important for selecting optimum target zones for horizontal wells. Understanding variation in pore type, size, and connectivity and relationships with mineralogy and fabric help in determining prospectivity in different parts of the basin. Deciphering controls on pore-system development helps predict intervals and locations of optimum reservoir quality. Imaging of Niobrara and Mowry samples from a range of thermal maturities provided observations and data on pore systems, organic matter (OM) types and associations with mineralogy and fabric, wettability, and microporosity associated with both diagenetic and detrital clays. Imaging techniques included scanning electron microscopy, organic petrography and correlative scanning electron microscopy, and mapping of mineralogy through energy dispersive spectroscopy. Mean solid bitumen (BR o ) and vitrinite reflectance (VR o ) values indicate all samples are in the oil window with values ranging from 0.52 to 1.15%. Organic fluorescence is prominent in amorphous OM, solid bitumen and some vitrinite in the early oil window. The fluorescence is extinguished at higher thermal maturity. Carbonate pellets (in Niobrara) mainly contain migrated solid bitumen and residual live oil and little or no terrigenous OM (vitrinite and inertinite). However, terrigenous OM is common in siliceous/argillaceous laminae in both formations, where it occurs with amorphous OM, some of which has converted in situ to a solid bitumen petroleum residue. One key finding is the widespread presence of migrated OM at very early oil window maturity. Distribution of such OM and associated wettability alteration is fabric-controlled, at all levels of thermal maturity studied. Clay morphology and abundance and supporting rigid mineral grain framework strongly influence pore development, preservation, and connectivity in both formations. Carbonate content is a good proxy for reservoir quality in Niobrara intervals due to association of porous solid bitumen with calcareous fecal pellets. High recrystallized microquartz content is associated with the best reservoir intervals in the Mowry.

Wyoming↗
USGS2024

Decoding paleomire conditions of Paleogene superhigh-organic-sulfur coals

Superhigh-organic‑sulfur (SHOS) coals (coals with organic sulfur content >4 wt%) are unique coal deposits found at a few notable locations in the world. Specific peat accumulation and preservation conditions must be met to form SHOS coals. Organic sulfur is a major constituent of such coals, and it may have various sources depending on the prevailing paleomire conditions. Understanding such paleomire conditions sheds light on the formation mechanisms of SHOS coals. This investigation decodes the paleomire conditions of the Paleogene SHOS coals from Meghalaya, India, using sulfur isotopic compositions ( δ 34 S) of organic sulfur ( δ 34 S OS ) and pyritic sulfur ( δ 34 S Py ) along with organic petrography, pyrite morphology and trace element ratios. Thirty coal samples were collected from the Jaintia Hills in the east, Khasi Hills in the middle, and Garo Hills in the west of Meghalaya. The organic sulfur content in the Garo, Khasi, and Jaintia coals varies from 1.0 to 3.3 wt%, 1.4 to 13.8 wt%, and 1.0 to 7.2 wt%, respectively. Further, after separation from pyritic sulfur and sulfate sulfur phases, the organic sulfur content ranges from 54.4 to 69.2%, 63.8 to 79.9%, and 59.3 to 73.8%, in the Garo, Khasi, and Jaintia Hills, respectively, suggesting the SHOS nature of these coal samples. The δ 34 S Py varies from −29.3 ‰ to +5.7 ‰, −21.3 ‰ to +27.3 ‰, and −12.1 ‰ to −4.3 ‰, in the Jaintia, Khasi, and Garo Hills, respectively, while the δ 34 S OS fluctuates from −4.6 ‰ to +3.7 ‰, −9.3 ‰ to +7.8 ‰, and − 9.0 ‰ to −5.0 ‰, respectively. The δ 34 S values of pyrite and organic sulfur (OS) in Jaintia coals are 34 S depleted compared to seawater sulfate (+22 ‰), leading to fractionations in the range of −51.3 ‰ to −16.3 ‰ (mean − 31.6 ‰) and − 26.6 ‰ to −18.3 ‰ (mean − 23.1 ‰) for pyritic and organic sulfur (OS), respectively. Pyrite in Khasi coals show a relatively heavier δ 34 S composition averaging at −20.5 ‰, whereas organic sulfur (OS) isotope compositions range from −31.3 ‰ to −14.2 ‰ with a mean of −22.6 ‰. Pyrite and OS in the Garo coals are depleted compared to seawater sulfate. Isotope variations in the Jaintia, Khasi, and Garo coals indicate microbial sulfate reduction (MSR) of seawater sulfate. Large isotopic fractionations between Eocene seawater sulfate and pyritic sulfur ( Δ 34 S SO4Eocene – pyrite = up to −51.3 ‰; mean − 31.6 ‰) in Jaintia coals indicate their possible formation in the water column/near the sediment-seawater interface (open system) and also hint toward dissimilatory sulfate reduction pathways that prevailed under anoxic redox conditions. However, mean values of Δ 34 S SO4Eocene – pyrite (−20.5 ‰) in the Khasi coals imply pyrite formation deeper in the sediments (more closed system) under dysoxic conditions. The dominance of OS over pyritic sulfur, framboidal pyrite, and its microcrystal size distributions in Jaintia coals may suggest syngenetic pyrite formation in open water reducing/anoxic conditions under paralic environments. Elevated Sr/Ba and U/Th values in these coals further confirm the anoxic conditions. Nevertheless, the presence of euhedral pyrite with the alleviated pyrite framboids in the Khasi coals and their complete absence in the Garo coals may suggest dysoxic-suboxic and suboxic-oxic depositional conditions, respectively. The isotopic signatures of the Garo coals suggest sulfur contribution from the parent paleobiota and MSR under a freshwater-oxic environment. Insignificant fractionations between δ 34 S Py and δ 34 S OS indicate limited iron and sulfate availability for additional sulfur cycling and disproportionation reactions, typical of oxic conditions. The absence of framboidal pyrite, elevated sulfate concentration, and mean Sr/Ba and U/Th values of 0.5 and 0.3, respectively, further suggest the freshwater peat deposition in the Garo Hills under limnotelmatic to telmatic freshwater conditions. Moreover, high inertinite content (I mmf = 9.77–33.16 vol%), possibly induced by atmospheric peat exposure, supports the interpretation of suboxic-oxic paleomire conditions in Garo Hills. Gradually decreasing mineral matter content from Jaintia (mean 13.6 vol%) to Garo coals (mean 7.4 vol%) additionally projects a transition from mesotrophic brackish to freshwater limnotelmatic environment, complementing the shift in the paleomire condition from eastern (Jaintia) to western (Garo) Meghalayan Hills.

International Journal of Coal Geology↗
USGS2024

The petrology of dispersed organic matter in sedimentary rocks: Review and update

Organic petrology developed from coal petrology, and, in the 1960s, it began to be applied to the study of dispersed organic matter (DOM) in sedimentary rocks other than coal. Over the last few decades, the petrology of DOM has been used to characterize organic matter in sedimentary basins with an emphasis on fossil fuel resource exploration. Today, due to the global research shift on topics related to climate, organic petrology has expanded into new application areas, such as geothermal exploration, biological carbon storage (biochar), disposal, and management of radioactive waste. From the publication of the International Handbook of Coal Petrology (mid-20th century) to the present day, a large number of standards, books, and articles have been published as a result of the work of organic petrographers and petrologists around the world and efforts of the International Committee for Coal and Organic Petrology (ICCP) and The Society for Organic Petrology (TSOP) to promote the study of organic petrology. The current fundamentals and standards of organic petrology provide the international scientific community with well-informed guidance and recommendations to promote in-depth research. However, this information is currently widely scattered, leading to discrepancies in methodology and terminology. Therefore, this paper aims to present a comprehensive review of the main analytical standard test methods and techniques currently used in the petrology of DOM under reflected white light and UV and blue-light excitation, and to provide an efficient and well-defined reference guide. Furthermore, considering the important role of the ICCP in the development of organic petrology since the 1950s, a brief review of the ongoing activities of ICCP dealing with DOM is also presented.

International Journal of Coal Geology↗
USGS2023

Combining field observations and high-resolution numerical modeling to demonstrate the effect of coral reef roughness on turbulence and its implications for reef restoration design

Coral reefs are effective natural barriers that protect adjacent coastal communities from hazards such as erosion and storm-induced flooding. However, the degradation of coral reefs compromises their ability to protect against these hazards, making degraded reefs a target for restoration. There have been limited field and numerical modeling studies conducted to understand how an increase in coral reef roughness, as would occur due to restoration, can affect wave energy dissipation for a range of real-world wave and water level conditions. To address this knowledge gap, field measurements were collected over adjacent low-roughness and high-roughness reefs off Molokaʻi, Hawaiʻi, USA, subjected to the same oceanographic forcing. Those field data were then used to calibrate and validate OpenFOAM computational fluid dynamics models of the reef. These calibrated models were then used to explore energy dissipation for a range of wave conditions based on measurements from a suite of existing datasets and values from the literature. In general, wave dissipation scales with incident wave conditions, where greater dissipation occurred for shallow depths and shorter-period waves. This tendency for short-period waves to be more readily attenuated is supported by wave energy dissipation factors in the range of 0.1–5, which decline with increasing wave period. Near-bed turbulent kinetic energy dissipation also scales with incident wave conditions, where the greatest difference in dissipation between low and high relief cases occurs for short wave periods. Turbulence becomes less affected by bottom roughness as the wave period increases. Based on this study, wave attenuation and turbulent energy dissipation could be enhanced by 0.5–1 order of magnitude (45% per across-shore meter) if the seabed roughness at the field site were increased by 13%, an achievable goal in coral reef restoration.

Coastal Engineering↗
USGS2024

Climate controls on longshore sediment transport and coastal morphology adjacent to engineered inlets

Coastal jetties are commonly used throughout the world to stabilize channels and improve navigation through inlets. These engineered structures form artificial boundaries to littoral cells by reducing wave-driven longshore sediment transport across inlet entrances. Consequently, beaches adjacent to engineered inlets are subject to large gradients in longshore transport rates and are highly sensitive to changes in wave climate. Here, we quantify annual beach and nearshore sediment volume changes over a 9-yr time period along 80 km of wave-dominated coastlines in the U.S. Pacific Northwest. Beach and nearshore monitoring during the study period (2014-2023) reveal spatially coherent, multi-annual patterns of erosion and deposition on opposing sides of two engineered inlets, indicating a regional reversal of longshore-transport direction. A numerical wave model coupled with a longshore transport predictor was calibrated and validated to explore the causes for the observed spatial and temporal patterns of erosion and deposition adjacent to the inlets. The model results indicate that subtle but important changes in wave direction on seasonal to multi-annual time scales were responsible for the reversal in the net longshore sediment transport direction and opposing patterns of morphology change. Changes in longshore transport direction coincided with a reversal in the Pacific Decadal Oscillation (PDO) climate index, suggesting large-scale, multi-decadal climate variability may influence patterns of waves and sediment dynamics at other sites throughout the Pacific basin.

Oregon, Washington↗
USGS2025

A laboratory-based spectrometer intercomparison for the measurement of snow spectra

Seasonal snow is an integral component of global hydrological systems, global energy budget and Earth's climate. As an important part of many Earth systems, seasonal snow is also an essential source of water for many human populations and ecosystems around the world. As such, the measurement of seasonal snow and characterization of uncertainty in those measurements is crucial. To elucidate potential uncertainty attributable to commonly used field spectrometers (and to a lesser extent imaging spectrometers) and associated reference panels, this work presents results from an intercalibration experiment conducted synchronously with the NASA 2023 Snow Experiment (SnowEx) Albedo campaign near Fairbanks, Alaska USA. Three sets of experiments were carried out under controlled laboratory conditions to characterize the radiometric and spectral wavelength consistency of the instruments as well as the white reference panels used to calculate reflectance from field measurements. Although there was generally good agreement between the instruments, panels, and the references, there were also some notable differences. One instrument showed an average − 74 % change from the reference for radiance, and multiple instruments exceeded the suggested 0.5 nm threshold for spectral wavelength scale. The Discussion section highlights how some of these findings and their implications could improve future field campaigns and general use/maintenance of these high-precision scientific instruments.

Alaska↗
USGS2006

Early Cretaceous terrestrial ecosystems in East Asia based on food-web and energy-flow models

In recent years, there has been global interest in the environments and ecosystems around the world. It is helpful to reconstruct past environments and ecosystems to help understand them in the present and the future. The present environments and ecosystems are an evolving continuum with those of the past and the future. This paper demonstrates the contribution of geology and paleontology to such continua. Using fossils, we can make an estimation of past population density as an ecosystem index based on food-web and energy-flow models. Late Mesozoic nonmarine deposits are distributed widely on the eastern Asian continent and contain various kinds of fossils such as fishes, amphibians, reptiles, dinosaurs, mammals, bivalves, gastropods, insects, ostracodes, conchostracans, terrestrial plants, and others. These fossil organisms are useful for late Mesozoic terrestrial ecosystem reconstruction using food-web and energy-flow models. We chose Early Cretaceous fluvio-lacustrine basins in the Choyr area, southeastern Mongolia, and the Tetori area, Japan, for these analyses and as a potential model for reconstruction of other similar basins in East Asia. The food-web models are restored based on taxa that occurred in these basins. They form four or five trophic levels in an energy pyramid consisting of rich primary producers at its base and smaller biotas higher in the food web. This is the general energy pyramid of a typical ecosystem. Concerning the population densities of vertebrate taxa in 1 km2 in these basins, some differences are recognized between Early Cretaceous and the present. For example, Cretaceous estimates suggest 2.3 to 4.8 times as many herbivores and 26.0 to 105.5 times the carnivore population. These differences are useful for the evaluation of past population densities of vertebrate taxa. Such differences may also be caused by the different metabolism of different taxa. Preservation may also be a factor, and we recognize that various problems occur in past ecosystem reconstructions. Counts of small numbers of confirmed species and estimates of maximum numbers of species present in the basin are used for the analysis and estimation of energy flow. This approach applies the methods of modern ecosystem analysis. ?? 2005 Elsevier Ltd. All rights reserved.

Cretaceous Research↗
USGS2009

Biostratigraphy of selected K/T boundary sections in southwestern North Dakota, USA: Toward a refinement of palynological identification criteria

The Cretaceous/Tertiary ( K / T ) boundary corresponds to one of the very few unique events in the geological record discovered to date, representing a single traceable timeline across the world. This timeline, coincident with the geochemical and mineralogical singularities caused by the impact of a large extraterrestrial body, is also coincident with the end-Cretaceous extinction event in North America. This precise timeline gives an ideal context for comparing the trends recorded by the different groups of the terrestrial fossil record during the K / T extinction event. However, in southwestern North Dakota , numerous studies conducted on excellent exposures of the K / T boundary showed that the geochemical and mineralogical criteria associated with the impact are rarely preserved. For that reason, palynology is preferred as a simple and efficient way for identifying the K / T boundary . In this context, a previously undescribed outcrop section from southwestern North Dakota was found to preserve an extensive record of the continental K / T boundary with miospores and plant megafossils, as well as microvertebrates and large vertebrate elements. Preliminary studies on the fossil associations recovered from this site showed an inconsistency between the Paleocene age given by the vertebrate and megafloral component and the Cretaceous age given by the palynological record. This issue is investigated in this paper, with a major emphasis on the description and analysis of the palynological record associated with sedimentological and paleoenvironmental data. Results shows that palynologically, the K / T boundary is placed more accurately using relative abundance variations of selected taxa.

North Dakota↗
USGS2005

Authigenesis of trace metals in energetic tropical shelf environments

We evaluated authigenic changes of Fe, Mn, V, U, Mo, Cd and Re in suboxic, periodically remobilized, tropical shelf sediments from the Amazon continental shelf and the Gulf of Papua. The Cd/Al, Mo/Al, and U/Al ratios in Amazon shelf sediments were 82%, 37%, and 16% less than those in Amazon River suspended sediments, respectively. Very large depletions of U previously reported in this environment were not observed. The Cd/Al ratios in Gulf of Papua sediments were 76% lower than measurements made on several Papua New Guinea rivers, whereas U/Al ratios in the shelf sediments were enriched by approximately 20%. Other metal/Al ratios in the Papua New Guinea river suspended sediments and continental shelf sediments were not distinguishably different. Comparison of metal/Al ratios to grain size distributions in Gulf of Papua samples indicates that our observations cannot be attributed to differences in grain size between the river suspended sediments and continental shelf sediments. These two shelves constitute a source of dissolved Cd to the world ocean equal to 29–100% of the dissolved Cd input from rivers, but only 3% of the dissolved Mo input and 4% of the dissolved U input. Release of Cd, Mo, and U in tropical shelf sediments is likely a result of intense Fe and Mn oxide reduction in pore waters and resuspension of the sediments. Since we do not observe depletions of particulate Fe and Mn in the shelf sediments most of these dissolved metals must reoxidize in the overlying waters and reprecipitate. As Cd exhibits the largest losses on these tropical shelves, we examined the ability of newly formed Fe and Mn oxides to adsorb dissolved Cd using a geochemical diffuse double-layer surface complexation model and found the oxide surfaces are relatively ineffective at readsorbing Cd in seawater due to surface-site competition by Mg and Ca. If the remobilization and reoxidation of Fe and Mn occurs frequently enough before sediment is buried significant amounts of Cd may be removed from the oxide surfaces. Because a much greater percentage of Mn than Fe becomes remobilized in these shelf sediments, metals closely associated with Mn oxides (like Cd) are more likely to show losses during deposition.

Continental Shelf Research↗
USGS2008

Time-averaged near-bed suspended sediment concentrations under waves and currents: Comparison of measured and model estimates

Profiles of suspended sediment concentration and velocity were measured over a 15-day period at a near-shore site off Santa Cruz, CA in Monterey Bay. The concentration and velocity data were collected with an Acoustic Backscattering System (ABS) and Acoustic Current Profiler (ACP) that were mounted on a bottom tripod. High-resolution bottom scanning sonar was also attached to the tripod to provide images of bed features during the experiment. Hourly time-averaged near-bed concentrations of suspended sediment were calculated from three models and compared with the measurements. Surface waves and currents that were generated by a storm of moderate intensity caused bed stresses that exceeded threshold stress for D 50 =0.02 cm, the median size of the moderately well-sorted bottom sediment, over a period of about 7 days. Estimates of the concentration at 1 cm above the bottom, C a1 , were obtained using the ABS measurements. These observations have been compared with predictions for the concentration at 1 cm above the bottom, C 1 . Nielsen's models for reference concentration C o [Nielsen, P., 1986. Suspended sediment concentrations under waves. Coastal Engineering 10, 32-31; Nielsen, P., 1992. Coastal Bottom Boundary Layers and Sediment Transport, Advanced Series on Ocean Engineering. World Scientific, Hackensack, NJ.] are purely wave-based and do not include effects of bottom currents on bed stress and bedform scales. C 1 calculated from this model compared well with measured C a1 when currents were weak and small oscillatory ripples were observed in the sonar images. However, during the 3-day period of highest bottom stresses modeled C 1 did not compare well to C a1 . The other two models for C 1 , Glenn and Grant [Glenn, S.M., Grant, W.D., 1987. A suspended sediment stratification correction for combined wave and current flows. Journal of Geophysical Research 92(C8), 8244-8264.] and van Rijn and Walstra [Van Rijn, L.C., Walstra, D.J.R., 2004. Description of TRANSPOR2004 and implementation in Delft3D-ONLINE. Interim Report prepared for DG Rijkswaterstaat, Rijksinstituut voor Kust en Zee. Delft Hydraulics Institute, The Netherlands.], accounted for combined wave-current stresses and included different formulations for predicting bedform scales. C 1 calculated from these models compared well with measurements throughout the early and middle period of the storm, but underpredicted measured values during the latter part of the experiment. An alternative method based on dimensional analysis provided a straightforward way to relate C 1 to bed stress and sediment parameters. This new relationship based on dimensional analysis explained about 77% of the variability in C a1 derived from the ABS data.

California↗
USGS2022

Amphibian mucus triggers a developmental transition in the frog-killing chytrid fungus

The frog-killing chytrid fungus Batrachochytrium dendrobatidis ( Bd ) is decimating amphibian populations around the world. Bd has a biphasic life cycle, alternating between motile zoospores that disperse within aquatic environments and sessile sporangia that grow within the mucus-coated skin of amphibians. Zoospores lack cell walls and swim rapidly through aquatic environments using a posterior flagellum and crawl across solid surfaces using actin structures similar to those of human cells. Bd transitions from this motile dispersal form to its reproductive form by absorbing its flagellum, rearranging its actin cytoskeleton, and rapidly building a chitin-based cell wall—a process called “encystation.” The resulting sporangium increases in volume by two or three orders of magnitude while undergoing rounds of mitosis without cytokinesis to form a large ceonocyte. The sporangium then cellurizes by dividing its cytoplasm into dozens of new zoospores. After exiting the sporangium through a discharge tube onto the amphibian skin, daughter zoospores can then reinfect the same individual or find a new host. Although encystation is critical to Bd growth, whether and how this developmental transition is triggered by external signals was previously unknown. We discovered that exposure to amphibian mucus triggers rapid and reproducible encystation within minutes. This response can be recapitulated with purified mucin, the bulk component of mucus, but not by similarly viscous methylcellulose or simple sugars. Mucin-induced encystation does not require gene expression but does require surface adhesion, calcium signaling, and modulation of the actin cytoskeleton. Mucus-induced encystation may represent a key mechanism for synchronizing Bd development with the arrival at the host.

Current Biology↗
USGS2022

New frontiers in bird migration research

Bird migrations are impressive behavioral phenomena, representing complex spatiotemporal strategies to balance costs of living while maximizing fitness. The field of bird migration research has made great strides over the past decades, yet fundamental gaps remain. Technologies have sparked a transformation in the study of bird migration research by revealing remarkable insights into the underlying behavioral, cognitive, physiological and evolutionary mechanisms of these diverse journeys. Here, we aim to encourage broad discussions and promote future studies by highlighting research fields that are characterized by major knowledge gaps or conflicting evidence, namely the fields of navigation, social learning, individual development, energetics and conservation. We approach each topic by summarizing the current state of knowledge and provide a future outlook of ideas and state-of-the-art methods to further advance the field. Integrating knowledge across these disciplines will allow us to understand the adaptive abilities of different species and to develop effective conservation strategies in a rapidly changing world.

Current Biology↗
USGS2018

New global high-resolution centerlines dataset of selected river systems

We present the first high resolution (1:20,000) river centerlines shapefiles from 50 large rivers across the world. Rivers were selected based on the criteria of having more than 1000 km length and which have been reported to have a significant contribution to global fishery production. Since large rivers often span multiple countries, the degree of changes (i.e., anthropogenic or climate derived) varies from region to region. These high-resolution layers were developed to enable researchers to delineate accurate river length, from headwaters regions to their delta and assess or visualize the ongoing changes more accurately in these river systems. Further, these polylines could be used in coordination with satellite derived environmental or landscape variables for ecological research (e.g. predicting biodiversity, estimating biomass).

Data in Brief↗
USGS2018

The influence of seep habitats on sediment macrofaunal biodiversity and functional traits

Chemosynthetic ecosystems in the Gulf of Mexico (GOM) support dense communities of seep megafaunal invertebrates that rely on endosymbiotic bacteria for nutrition. Distinct infaunal communities are associated with the biogenic habitats created by seep biota, where habitat heterogeneity and sediment geochemistry influence local macrofaunal community structure. Here we examine the community structure and function of seep infaunal communities in the GOM in relation to environmental drivers and estimated proximity to seeps. We modeled seep distribution within 3 major seep fields (AC601, GC852, and AT340), and examined the influence of proximity to seep and associated sediment environment on infaunal community structure and function. To model seep habitat distribution, we used known seep occurrence data from ROV and towed camera images, terrain variables derived from high resolution multibeam bathymetry (gridded to 3 m resolution), and a maximum entropy (Maxent) approach. Model performance was high, with mean area under the curve for each habitat ranging from 0.851 for mussel to 0.908 for tubeworm habitat, with the models highly influenced by terrain rugosity. Replicate sediment cores were collected from the three sites in 2007 and processed for macrofauna and environmental characteristics. A majority of the taxa (86%) occurred within 16 m of modeled seep habitat and increased distance from modeled seeps was generally associated with lower calculated seep index coupled with decreased macrofaunal densities. Distance-based linear regression indicated that patterns in macrofaunal communities were driven by proximity to modeled seep habitat and profile curvature, a metric for the shape of the maximum slope. Similarly, variance in infaunal functional traits was best explained by proximity to seep, but also sediment C:N, reflecting the relative influence of sediment chemistry, including organic content, on infaunal communities. Results suggest that northern GOM seep infaunal community assemblages and their function are structured by factors that influence food availability and habitat heterogeneity. Given the abundance of seeps in the GOM and in the world’s oceans, this study supports the premise that the sphere of influence of seeps is spatially extensive.

Deep-Sea Research Part I: Oceanographic Research P↗
USGS2007

Rare-earth elements in the Permian Phosphoria formation: Paleo proxies of ocean geochemistry

The geochemistry of deposition of the Meade Peak Member of the Phosphoria Formation (MPM) in southeast Idaho, USA, a world-class sedimentary phosphate deposit of Permian age that extends over 300,000 km 2 , is ascertained from its rare earth element (REE) composition. Ratios of REE:Al 2 O 3 suggest two sources—seawater and terrigenous debris. The seawater-derived marine fraction identifies bottom water in the Phosphoria Sea as O 2 -depleted, denitrifying (suboxic) most of the time, and seldom sulfate-reducing (anoxic). This interpretation is supported by earlier research that showed progressively greater ratios in the marine sediment fraction of Cr:Ni>V:Ni⪢Mo:Ni, relative to their ratios in seawater; for which marine Cr, V, and Mo can have a dominantly O 2 –depleted bottom-water source and Ni a photic-zone, largely algal, source. The water chemistry was maintained by a balance between bacterial oxidation of organic matter settling through the water column, determined largely by primary productivity in the photic zone, and the flux of oxidants into the bottom water via advection of seawater from the open ocean. Samples strongly enriched in carbonate fluorapatite, the dominant REE host mineral, have variable Er/Sm, Tm/Sm, and Yb/Sm ratios. Their distribution may represent greater advection of seawater between the Phosphoria Sea and open ocean during deposition of two ore zones than a center waste and greater upwelling of nutrient-enriched water into the photic zone. However, the mean rate of deposition of marine Ni, a trace nutrient of algae, and PO 4 3− , a limiting nutrient, indicate that primary productivity was probably high throughout the depositional history. An alternative interpretation of the variable enrichments of Er, Tm, and Yb, relative to Sm, is that they may reflect temporally variable carbonate alkalinity of open-ocean seawater in Permian time. A more strongly negative Ce anomaly for all phosphatic units than the Ce anomaly of modern pelletal phosphate is further indicative of an elevated O 2 concentration in the Permo-Carboniferous open ocean, as proposed by others, in contrast to the depletion of O 2 in the bottom water of the Phosphoria Sea itself. The oceanographic conditions under which the deposit accumulated were likely similar to conditions under which many sedimentary phosphate deposits have accumulated and to conditions under which many black shales that are commonly phosphate poor have accumulated. A shortcoming of several earlier studies of these deposits has resulted from a failure to examine the marine fraction of elements separate from the terrigenous fraction.

Idaho↗
USGS2009

Recolonization of gravel habitats on Georges Bank (northwest Atlantic)

Gravel habitats on continental shelves around the world support productive fisheries but are also vulnerable to disturbance from bottom fishing. We conducted a 2-year in situ experiment to measure the rate of colonization of a gravel habitat on northern Georges Bank in an area closed to fishing (Closed Area II) since December 1994. Three large (0.25 m 2 ) sediment trays containing defaunated pebble gravel were deployed at a study site (47 m water depth) in July 1997 and recovered in June 1999. The undersides of the tray lids positioned 56 cm above the trays served as settlement panels over the same time period. We observed rapid colonization of the gravel substrate (56 species) and the settlement panels (35 species), indicating that colonization of gravel in this region is not limited by the supply of colonists. The species composition of the taxa found in the trays was broadly similar to that we collected over a 10-year period (1994-2004) in dredge samples from gravel sediments at the same site. The increase in abundance of animals in the gravel colonization trays was rapid and reached a level in 2 years that took 4.5 years to achieve in the surrounding gravel sediments once fishing had stopped, based on data from dredge sampling at this site. The increase in biomass of animals found in the sediment trays paralleled the trend of biomass increase observed in dredge samples over the same period (1997-1999) but was lower in value. These data suggest that after rapid initial increase in abundance of organisms, succession proceeded by increasing individual body size. A comparison of settlement panel and tray faunas revealed that the mean biomass of structure-forming epifauna (sponges, bryozoans, anemones, hydroids, colonial tube worms) on the panels was 8 times that found on the trays. Structure-forming taxa constituted 29% of the mean biomass of the panel fauna but only 5.5% of the tray fauna. By contrast, the mean biomass of scavengers (crabs, echinoderms, nudibranchs, gastropods) in the trays was 32 times that on the panels. Colonization of the tray gravel was more rapid for free-living species (many of which are prey for fish) than for structure-forming epifauna, though colonists of the latter species were present. The reduced success of structure-forming species in colonizing the tray gravel possibly is related to factors such as intermittent burial of the gravel by migrating sand and low survival of new recruits due to the presence of high numbers of scavengers on the gravel. These two factors might explain, to varying degree, the slow recolonization of gravel habitats by structure-forming species in Closed Area II of the northern part of Georges Bank. ?? 2009 Elsevier Ltd.

Deep-Sea Research Part II: Topical Studies in Ocea↗