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At least 1,567 records · Page 87Linked to original sources
USGS2025

Mapping global coral vulnerability to stony coral tissue loss disease: Implications for biosecurity and conservation

Stony Coral Tissue Loss Disease (SCTLD) has devastated Caribbean coral reefs since 2014, but its potential for global impact remains uncertain. We developed predictive models to assess the worldwide vulnerability of coral reefs to SCTLD under different origin and spread hypotheses. Using random forest regression models incorporating coral taxonomy and zooxanthellae clade associations from 52 taxa, we projected SCTLD susceptibility and mortality patterns globally using six indices: Mean susceptibility per genus per location, Summed susceptibilities across genera per location, Summed susceptibilities across genera per realm, Mean mortality per genus per location, Summed mortalities across genera per location, and Summed mortalities across genera per realm. Models demonstrated strong predictive performance (R² = 0.57 for susceptibility; R² = 0.73 for mortality) and revealed that about 7% of coral genera per location are potentially susceptible to SCTLD. While mean susceptibility and mortality per genus were highest in the Tropical Atlantic, the summed susceptibility and mortality across genera were much higher in the biodiverse Central Indo-Pacific. Natural barriers could limit SCTLD’s spread, including the mid-Atlantic gap and the low diversity of the Tropical Eastern Pacific, supporting the contained disease hypothesis. However, the widespread distribution of susceptible genera across coral reef realms indicates significant vulnerability should SCTLD circumvent these barriers through human-mediated transport, particularly via ballast water or the aquarium trade. If SCTLD is an invasive pathogen originating in the Pacific, as shipping patterns for the aquarium trade suggest, mortality in its native range would likely be lower than our projections. These findings point to targeted intervention strategies, including enhanced monitoring at key locations, assessment of biosecurity needs in high-risk areas, and prioritized conservation efforts in vulnerable high-diversity regions to prevent SCTLD from spreading globally.

Frontiers in Marine Science↗
USGS2012

A fine-scale assessment of using barriers to conserve native stream salmonids: a case study in Akokala Creek, Glacier National Park, USA

Biologists are often faced with the difficult decision in managing native salmonids of where and when to install barriers as a conservation action to prevent upstream invasion of nonnative fishes. However, fine-scale approaches to assess long-term persistence of populations within streams and watersheds chosen for isolation management are often lacking. We employed a spatially-explicit approach to evaluate stream habitat conditions, relative abundance, and genetic diversity of native westslope cutthroat trout (Oncorhynchus clarkii lewisi) within the Akokala Creek watershed in Glacier National Park- a population threatened by introgressive hybridization with nonnative rainbow trout (O. mykiss) from nearby sources. The systematic survey of 24 stream reaches showed broad overlap in fish population and suitable habitat characteristics among reaches and no natural barriers to fish migration were found. Analysis of population structure using 16 microsatellite loci showed modest amounts of genetic diversity among reaches, and that fish from Long Bow Creek were the only moderately distinct genetic group. We then used this information to assess the potential impacts of three barrier placement scenarios on long-term population persistence and genetic diversity. The two barrier placement scenarios in headwater areas generally failed to meet general persistence criteria for minimum population size (2,500 individuals, Ne = 500), maintenance of long-term genetic diversity (He), and no population subdivision. Conversely, placing a barrier near the stream mouth and selectively passing non-hybridized, migratory spawners entering Akokala Creek met all persistence criteria and may offer the best option to conserve native trout populations and life history diversity. Systematic, fine-scale stream habitat, fish distribution, and genetic assessments in streams chosen for barrier installation are needed in conjunction with broader scale assessments to understand the potential impacts of using barriers for conservation of native salmonid populations threatened by nonnative fish invasions.

Open Fish Science Journal↗
USGS1993

Crude oil in a shallow sand and gravel aquifer—I. Hydrogeology and inorganic geochemistry

Changes in the distribution of inorganic solutes in a shallow ground water contaminated by crude oil document a series of geochemical reactions initiated by biodegradation of the oil. Upgradient of an oil body floating on the water table, oxidation of oil to carbonic acid dissolves carbonate minerals in the aquifer matrix. In this oxidized zone pH is depressed ∼1 pH unit, and the concentrations of Ca, Mg and HCO 3 − increase to more than twice that of the native ground water. In the anoxic zone beneath the oil body concentrations of dissolved SiO 2 , Sr, K, Fe and Mn increase significantly. Here, Fe is mobilized by microbial reduction, pH is buffered by the carbonate system, and silicates weather via hydrolysis and organic-acid-enhanced dissolution. Farther down-gradient the ground water is reoxygenated and Fe precipitates from solution, possibly as iron hydroxide or iron carbonates, while SiO 2 precipitates as amorphous silica. Other solutes, such as Mg, are transported more conservatively down-gradient where contaminated and native ground water mix. The observed changes in inorganic aqueous chemistry document changes in water-mineral interactions caused by the presence of an organic contaminant. These organic-initiated interactions are likely present in many contaminated aquifers and may be analogous to interactions occurring in other organic-rich natural waters.

Minnesota↗
USGS2026

Watershed Continuum Monitoring Approach: Combining multiple water quality patterns along stream and river flowpaths to track sources, pathways, and processing of pollutants

There is a growing need to improve and expand water quality monitoring approaches to more accurately track the sources, fate, and transport of multiple chemicals and pollutants holistically and quantify the effects of best management practices (BMPs) at the watershed scale. An overarching question raised by scientists, environmental managers, and the general public is: how far can water quality impacts from disturbances or benefits from watershed management and restoration propagate along stream and river flowpaths? Many studies using the classic watershed approach focus on analyzing changes in water quality over time at one or a few sampling stations, whereas theories such as the River Continuum Concept focus on predicting shifts in energy sources and biological communities along rivers but have not been directly applied to water quality. We propose to merge these concepts to create a Watershed Continuum Monitoring Approach (WCMA) that combines both spatial and temporal monitoring in order to better detect and quantify trends and transitions in multiple water quality indicators along flowpaths. Specifically, an array of multiple water quality indicators are analyzed at multiple downstream points along a watershed flowpath over time. These multiple water quality indicators are analyzed together for making comparisons to infer hydrological, biological, and geochemical processes controlling sources, transport, and attenuation of pollutants ( e.g. , analagous to stream tracer studies at the watershed scale). The WCMA leverages the natural expansion of watershed areas along a flowpath, which reflect transitions in land use, land cover, and environmental management across spatial and temporal dimensions for making direct comparisons across different stream reaches and spatial trend analysis. WCMA facilitates monitoring of multiple water quality indicators together, and identifcation of hot spots in sources and attenuation of pollutants or mixtures of pollutants. We illustrate practical applications of the WCMA to analyze water quality trends, transitions, and tradeoffs ( i.e. , a tradeoff occurs when one pollutant is reduced but another is directly or indirectly increased downstream). We explore case studies that quantify: (1) downstream reductions in concentrations of multiple pollutants along a stream flowing to a major drinking water source due to engineered and nature-based solutions, (2) downstream reductions in multiple pollutants and water quality tradeoffs along streams experiencing stormwater BMPs and stream restoration, (3) comparisons in downstream reductions of multiple pollutants and nutrient uptake along streams draining into major drinking water sources based on types of stream restoration, (4) comparisons of downstream pollutant reductions along streams experiencing riparian forest conservation vs. stream restoration, and (5) mapping and visualizing hot spots of increasing water quality problems such as hypoxia, contaminant mobilization, and freshwater salinization that extend downstream to tidal rivers of the Chesapeake Bay. We explore future applications of WCMA for tracking decreasing trends in salinity, E. coli , and other pollutants of emerging concern. WCMA can holistically inform progress towards achieving multiple water quality goals and also be used as a screening tool for selecting monitoring sites and targeting management in strategic locations. Overall, WCMA enables the simultaneous quantification and comparison of sources and transport and attenuation rates for different chemicals and pollutants across a broader range of watershed sizes and flowpath lengths, which is critical for understanding ecological, hydrological, geochemical, and biogeochemical processes along human-impacted streams and rivers.

Ecological Engineering↗
USGS2015

Discovery of a novel hepatovirus (Phopivirus of seals) related to human hepatitis A virus

Describing the viral diversity of wildlife can provide interesting and useful insights into the natural history of established human pathogens. In this study, we describe a previously unknown picornavirus in harbor seals (tentatively named phopivirus) that is related to human hepatitis A virus (HAV). We show that phopivirus shares several genetic and phenotypic characteristics with HAV, including phylogenetic relatedness across the genome, a specific and seemingly quiescent tropism for hepatocytes, structural conservation in a key functional region of the type III internal ribosomal entry site (IRES), and a codon usage bias consistent with that of HAV.

mBio↗
USGS2018

Rapid discovery of SNPs differentiating hatchery steelhead trout from ESA-listed natural-origin steelhead trout using a 57K SNP array

Natural-origin steelhead trout ( Oncorhynchus mykiss (Walbaum, 1792)) in the Pacific Northwest, USA, are threatened by a number of factors including habitat destruction, disease, decline in marine survival, and a potential erosion of genetic viability due to introgression from hatchery strains. Our major goal was to use a recently developed SNP array containing ∼57 000 SNPs to identify a subset of SNPs that differentiate hatchery and natural-origin populations. We analyzed 35 765 polymorphic SNPs in nine populations of steelhead trout sampled from Puget Sound, Washington, USA. We then conducted two outlier tests and found 360 loci that were candidates for divergent selection between hatchery and natural-origin populations (mean F CT = 0.29, maximum = 0.65) and 595 SNPs that were candidates for selection among natural-origin populations (mean F ST = 0.25, maximum = 0.51). Comparisons with a linkage map revealed that two chromosomes (Omy05 and Omy25) contained significantly more outliers than other chromosomes, suggesting that regions on Omy05 and Omy25 may be of adaptive significance. Our results highlight several advantages of the 57 000 SNP array as a tool for population and conservation genomics studies.

British Columbia, Washington↗
USGS2022

Factors influencing the use of water-filled tree cavities by eastern ratsnakes (Pantherophis alleghaniensis)

For some animals, specific microhabitats may be particularly important for certain behaviors and/or age or sex classes. Here we explore the use of previously unrecognized retreat sites (water-filled tree cavities) by Eastern Ratsnakes ( Pantherophis alleghaniensis ). During 4 y of radio telemetry, approximately half of the 45 ratsnakes monitored used water-filled cavities. Typically, water-filled cavities (phytotelmata) were in live Laurel Oaks ( Quercus laurifolia ) and Black Cherry ( Prunus serotina ) where limbs had broken off, internal wood had rotted, and water accumulated. Water-filled cavities were used by ratsnakes at about the same frequency as tree stumps but less frequently than snags, brushpiles, or downed logs. Snakes remained in water-filled cavities for an average of 10 d compared to only 2–4 d in other structures. Reproductive females (both pre- and post-egg laying) were four times more likely to use water-filled cavities than non-gravid or male ratsnakes, suggesting cavities are used to offset water loss associated with gestation. Ratsnakes used water-filled cavities far more in summer than spring even though thermal profiles of cavities were similar to those of other retreat structures, indicating their use was not for thermoregulation. Multiple snakes often used cavities simultaneously, suggesting that cavities are either limited or facilitate social interaction. Snakes did not use artificial water-filled cavities, suggesting that natural sites may provide snakes with some unknown benefit beyond hydration. Water-filled cavities appear to be important for ratsnakes, particularly reproductive females, and warrant further investigation.

South Carolina↗
USGS2020

Mortality and cholinesterase inhibition in butterflies following aerial naled applications for mosquito control on the National Key Deer Refuge

Natural resource managers are concerned about the impacts of aerial ultra-low volume spray (ULV) of insecticides for mosquito control (i.e., mosquito adulticides) and seek science-driven management recommendations that reduce risk but allow vector control for nearby human populations. Managers at the National Key Deer Refuge (Florida Keys, FL) are concerned for ULV effects upon conservation efforts for imperiled butterflies (Florida leafwing [ Anaea troglodyta floridalis ] and Bartram’s hairstreak [ Strymon acis bartrami ] butterflies). No-spray zones were designated for protection of those butterflies, but their effectiveness for mitigation is unclear. To address this uncertainty, cholinesterase activity (ChE) and mortality were monitored for caged butterflies gulf fritillary [ Agraulis vanilla ] and great southern white [ Ascia monuste ]) deployed on the Refuge during three aerial ULV applications of the insecticide naled. Residue samplers also were deployed to estimate butterfly exposure. Spray efficacy against mosquitoes was assessed by deploying caged mosquitoes at the same locations as the butterflies. Average naled residue levels on filter paper samplers in the target area (1882–2898 µg/m 2 ) was significantly greater than in the no-spray zone (9–1562 µg/m 2 ). Differences between the no-spray zone and target area for butterfly mortality and ChE were inconsistent. Average mortality was significantly lower, and average ChE was significantly higher in the no-spray zone for larvae of one species but not for larvae of the other species. Mosquito mortality did not differ significantly between the two areas. Data from the present study reflect the inconsistent effectiveness of no-spray zones on the Refuge using standard methods employed at the time by the vector control agency in the Florida Keys and possibly by other vector control agencies in similar coastal environments. Furthermore, these findings helped to guide the design and to improve the conservation value of future no-spray zone delineations while allowing for treatment in areas where mosquito control is necessary for vector-borne disease reduction.

Florida↗
USGS2001

Interparticle collision of natural sediment grains in water

Elastohydrodynamic theory and measurements of particle impacts on an inclined glass plane in water are used to investigate the mechanics of interparticle collisions in sediment‐transporting flows. A collision Stokes number is proposed as a measure of the momentum of an interparticle collision versus the viscous pressure force in the interstitial gap between colliding particles. The viscous pressure force opposes motion of the particles on approach and rebound. A Stokes number of between 39 and 105 is estimated as the critical range below which particle impacts are completely viscously damped and above which impacts are partially elastic. The critical Stokes number is shown to roughly coincide with the Bagnold number transition between macroviscous and grain inertial debris flows and the transition between damped and partially elastic bed load transport saltation impacts. The nonspherical nature of natural particles significantly alters the motion of the center of mass after a partially elastic collision. The normal to the point of contact between the particles does not necessarily go through the center of mass. Thus normal rebound of the center of mass may not occur. A model of particle motion after rebound for particles of arbitrary shape, conserving both linear and angular momentum, is proposed.

Water Resources Research↗
USGS2012

The macroecology of sustainability

The discipline of sustainability science has emerged in response to concerns of natural and social scientists, policymakers, and lay people about whether the Earth can continue to support human population growth and economic prosperity. Yet, sustainability science has developed largely independently from and with little reference to key ecological principles that govern life on Earth. A macroecological perspective highlights three principles that should be integral to sustainability science: 1) physical conservation laws govern the flows of energy and materials between human systems and the environment, 2) smaller systems are connected by these flows to larger systems in which they are embedded, and 3) global constraints ultimately limit flows at smaller scales. Over the past few decades, decreasing per capita rates of consumption of petroleum, phosphate, agricultural land, fresh water, fish, and wood indicate that the growing human population has surpassed the capacity of the Earth to supply enough of these essential resources to sustain even the current population and level of socioeconomic development.

PLoS Biology↗
USGS2005

Design and analysis of a natural-gradient ground-water tracer test in a freshwater tidal wetland, West Branch Canal Creek, Aberdeen Proving Ground, Maryland

A natural-gradient ground-water tracer test was designed and conducted in a tidal freshwater wetland at West Branch Canal Creek, Aberdeen Proving Ground, Maryland. The objectives of the test were to characterize solute transport at the site, obtain data to more accurately determine the ground-water velocity in the upper wetland sediments, and to compare a conservative, ionic tracer (bromide) to a volatile tracer (sulfur hexafluoride) to ascertain whether volatilization could be an important process in attenuating volatile organic compounds in the ground water. The tracer test was conducted within the upper peat unit of a layer of wetland sediments that also includes a lower clayey unit; the combined layer overlies an aquifer. The area selected for the test was thought to have an above-average rate of ground-water discharge based on ground-water head distributions and near-surface detections of volatile organic compounds measured in previous studies. Because ground-water velocities in the wetland sediments were expected to be slow compared to the underlying aquifer, the test was designed to be conducted on a small scale. Ninety-seven ?-inch-diameter inverted-screen stainless-steel piezometers were installed in a cylindrical array within approximately 25 cubic feet (2.3 cubic meters) of wetland sediments, in an area with a vertically upward hydraulic gradient. Fluorescein dye was used to qualitatively evaluate the hydrologic integrity of the tracer array before the start of the tracer test, including verifying the absence of hydraulic short-circuiting due to nonnatural vertical conduits potentially created during piezometer installation. Bromide and sulfur hexafluoride tracers (0.139 liter of solution containing 100,000 milligrams per liter of bromide ion and 23.3 milligrams per liter of sulfur hexafluoride) were co-injected and monitored to generate a dataset that could be used to evaluate solute transport in three dimensions. Piezometers were sampled 2 to 15 times each, from July 1998 through September 1999, to assess background conditions and monitor tracer movement. During the test, 644 samples were analyzed for fluorescein, 617 samples were analyzed for bromide with an ion-selective electrode, 213 samples were analyzed for bromide with colorimetric methods, and 603 samples were analyzed for sulfur hexafluoride, including samples collected prior to tracer injection to determine background concentrations. Additional samples were analyzed for volatile organic compounds (96 samples) and methane (37 samples) to determine the distribution of these contaminants and the extent of methanogenic conditions within the tracer array; however, these data were not used for the analysis of the test. During the tracer test, the fluorescein dye, bromide, and sulfur hexafluoride were transported predominantly in the upward direction, although all three tracers also moved outward in all directions from the injection point, and it is likely that some tracer mass moved beyond the lateral edges of the array. An analysis of the tracer-test data was performed through the use of breakthrough curves and isoconcentration contour plots. Results show that movement of the fluorescein dye, a non-conservative tracer, was retarded compared to the other two tracers, likely as a result of sorption onto the wetland sediments. Suspected loss of tracer mass along the lateral edges of the array prevented a straightforward quantitative analysis of tracer transport and ground-water velocity from the bromide and sulfur-hexafluoride data. In addition, the initial density of the bromide/sulfur hexafluoride solution (calculated to be 1.097 grams per milli2 Ground-Water Tracer Test, West Branch Canal Creek, Aberdeen Proving Ground, MD liter) could have caused the solution to sink below the injection point before undergoing dilution and moving back up into the array. For these reasons, the data analysis in this report was performed largely through qualitative method

Scientific Investigations Report↗
USGS2012

A data-based conservation planning tool for Florida panthers

Habitat loss and fragmentation are the greatest threats to the endangered Florida panther ( Puma concolor coryi ). We developed a data-based habitat model and user-friendly interface so that land managers can objectively evaluate Florida panther habitat. We used a geographic information system (GIS) and the Mahalanobis distance statistic ( D 2 ) to develop a model based on broad-scale landscape characteristics associated with panther home ranges. Variables in our model were Euclidean distance to natural land cover, road density, distance to major roads, human density, amount of natural land cover, amount of semi-natural land cover, amount of permanent or semi-permanent flooded area–open water, and a cost–distance variable. We then developed a Florida Panther Habitat Estimator tool, which automates and replicates the GIS processes used to apply the statistical habitat model. The estimator can be used by persons with moderate GIS skills to quantify effects of land-use changes on panther habitat at local and landscape scales. Example applications of the tool are presented.

Florida↗
USGS2026

Satellite tracking of Galapagos Petrel Pterodroma phaeopygia reveals distribution and movements during chick rearing

We tracked 19 adult Galapagos Petrels Pterodroma phaeopygia during the chick-rearing seasons in 2009 and 2010 (Santa Cruz Island [ n = 16] and Floreana Island [ n = 3]) in the Galápagos Islands, Ecuador. Eight petrels performed 27 complete foraging trips lasting 0.6 to 18.8 days. Short trips (3.2 ± 2.1 days; 785 km; max displacement 671 km) and long trips (10.8 ± 3.9 days; 2,856 km; max displacement 1,034 km) resulted in concentrated use of waters off southern and western Isabela Island and within the Galápagos Marine Reserve (GMR). Less concentrated time extended farther southwest and eastward, in that case toward mainland Ecuador. Total distance covered among all completed trips, independent of duration, was strongly correlated with trip duration ( R ² = 0.92), indicating a strategy favoring active searching and foraging over commuting. Petrels ranged across Ecuador's exclusive economic zone (EEZ), as well as other countries' (Colombia, Costa Rica, Perú), and waters beyond; they spent 46%, 27%, and 34% of their time in the GMR during short, long, and apparent (incomplete) trips, respectively. However, overlap with EEZs or marine protected areas (MPAs) does not necessarily confer protection, because commercial tuna fishing, including legal fishing historically permitted inside the GMR, occurs within these waters. Including all complete and incomplete trips, petrels spent 37% of their time in high-seas waters without formal protection, outside both MPAs and EEZs. While some hot spots overlapped Galápagos MPAs, the far-ranging nature of chick-provisioning petrels underscores the importance for this species of also having coordinated, multinational protection of the high seas.

Floreana Island, Galápagos Islands, Santa Cruz Isl↗
USGS2017

Spatiotemporal ecology of Apalone spinifera in a large, Great Plains river ecosystem

Sparse information exists about the ecology of Spiny Softshell Turtles (Apalone spinifera) in large rivers, at the northwestern extent of their natural range, and in Montana, where they are disjunct from downstream populations and a State Species of Concern. We determined spatiotemporal ecology of 47 female and 12 male turtles from 2009 through 2012 and identified fundamental habitats in the Missouri River in east-central Montana. Movement rates of females were greater than those of males and peaked before nesting. Movement rates of males peaked before overwintering, and movement rates of both sexes were minimal in winter. Home range sizes were not different between sexes, varied among individuals and seasons, and were similar to those reported elsewhere in their northern range. Turtles aggregated and showed interannual fidelity to separate and disparate habitats in different seasons. Turtles often chose fine substrates, tributary confluences, and reaches with islands during summer and mainstem outside bends in the winter. They inhabited shallow, slow water velocity areas from May to September. They inhabited deeper, moderate velocity areas from October to April. We did not observe ice jams and associated riverbed scour at hibernacula, but did observe them elsewhere. Ice jams may be spatially predictable and influence the distribution of riverine turtles during autumn and winter. Preservation of dissimilar habitats used during major portions of the life cycle (lateral habitats, islands, and hibernacula) and natural streamflow patterns, which influenced timing of habitat availability and turtle movement, may facilitate continued existence of Spiny Softshell Turtles in the Missouri River in Montana

Herpetological Conservation and Biology↗
USGS2011

Ecosystem services provided by playas in the High Plains: potential influences of USDA conservation programs

Playas are shallow depressional wetlands and the dominant wetland type in the non-glaciated High Plains of the United States. This region is one of the most intensively cultivated regions in the Western Hemisphere, and playas are profoundly impacted by a variety of agricultural activities. Conservation practices promoted through Farm Bills by the U.S. Department of Agriculture (USDA) that influence playas and surrounding catchments impact ecosystem functions and related services provided by wetlands in this region. As part of a national assessment, we review effects of agricultural cultivation and effectiveness of USDA conservation programs and practices on ecosystem functions and associated services of playas. Services provided by playas are influenced by hydrological function, and unlike other wetland types in the United States, hydrological function of playas is impacted more by accumulated sediments than drainage. Most playas with cultivated catchments have lost greater than 100% of their volume from sedimentation causing reduced hydroperiods. The Conservation Reserve Program (CRP) has the largest influence on playa catchments (the High Plains has >2.8 million ha), and associated sedimentation, of any USDA program. Unfortunately, most practices applied under CRP did not consider restoration of playa ecosystem function as a primary benefit, but rather established dense exotic grass in the watersheds to reduce soil erosion. Although this has reduced soil erosion, few studies have investigated its effects on playa hydrological function and services. Our review demonstrates that the Wetlands Reserve Program (WRP) has seldom been applied in the High Plains outside of south-central Nebraska. However, this is the primary program that exists within the USDA allowing conservation practices that restore wetland hydrology such as sediment removal. In addition to sediment removal, this practice has the greatest potential effect on improving hydrologic function by reducing sedimentation in vegetative buffer strips. We estimate that a 50-m native-grass buffer strip could improve individual playa hydroperiods by up to 90 days annually, enhancing delivery of most natural playa services. The potential for restoration of playa services using USDA programs is extensive, but only if WRP and associated practices are promoted and playas are considered an integral part of CRP contracts.

Colorado, Kansas, Nebraska, New Mexico, Oklahoma, ↗
USGS2008

Delayed genetic effects of habitat fragmentation on the ecologically specialized Florida sand skink ( Plestiodon reynoldsi )

Populations rarely show immediate genetic responses to habitat fragmentation, even in taxa that possess suites of traits known to increase their vulnerability to extinction. Thus conservation geneticists must consider the time scale over which contemporary evolutionary processes operate to accurately portray the effects of habitat isolation. Here, we examine the genetic impacts of fragmentation on the Florida sand skink Plestiodon reynoldsi , a sand swimming lizard that is highly adapted to the upland scrub habitat of central Florida. We studied fragments located on the southern Lake Wales Ridge, where human activity in the latter half of the 20th century has modified the natural patchiness of the landscape. Based on a relaxed molecular clock method, we estimate that sand skinks have persisted in this region for approximately 1.5 million years and that the time frame of human disturbance is equivalent to fewer than 30 skink generations. Using genotypes from eight microsatellite loci, we screened for molecular signatures of this disturbance by assessing congruence between population structure, as inferred from spatially-informed Bayesian assignment tests, and the current geography of scrub fragments. We also tested for potential intrapopulation genetic effects of inbreeding in isolated populations by comparing the average pairwise relatedness of individuals within fragments of different areas and isolation. Our results indicate that although some patches show a higher degree of relatedness than expected under random mating, the genetic effects of recent isolation are not evident in this part of the species’ range. We argue that this result is an artefact of a time-lag in the response to disturbance, and that species-typical demographic features may explain the genetic inertia observed in these populations.

Conservation Genetics↗
USGS1996

Geochemistry of aquatic humic substances in the Lake Fryxell basin, Antarctica

Dissolved organic carbon (DOC) in Lake Fryxell, 10 streams flowing into the lake, and the moat surrounding the lake was studied to determine the influence of sources and biogeochemical processes on its distribution and chemical nature. Lake Fryxell is an amictic, permanently ice-covered lake in the McMurdo Dry Valleys which contains benthic and planktonic microbial populations, but receives essentially no input of organic material from the ahumic soils of the watershed. Biological activity in the water column does not appear to influence the DOC depth profile, which is similar to the profiles for conservative inorganic constituents. DOC values for the streams varied with biomass in the stream channel, and ranged from 0.2 to 9.7 mg C/L. Fulvic acids in the streams were a lower percentage of the total DOC than in the lake. These samples contain recent carbon and appear to be simpler mixtures of compounds than the lake samples, indicating that they have undergone less humification. The fulvic acids from just above the sediments of the lake have a high sulfur content and are highly aliphatic. The main transformations occurring as these fractions diffuse upward in the water column are 1) loss of sulfur groups through the oxycline and 2) decrease in aliphatic carbon and increase in the heterogeneity of aliphatic moieties. The fraction of modem 14C content of the lake fulvic acids range from a minimum of 0.68 (approximately 3000 years old) at 15m depth to 0.997 (recent material) just under the ice. The major processes controlling the DOC in the lake appear to be: 1) The transport of organic matter by the inflow streams resulting in the addition of recent organic material to the moat and upper waters of the lake; 2) The diffusion of organic matter composed of relict organic material and organic carbon resulting from the degradation of algae and bacteria from the bottom waters or sediments of the lake into overlying glacial melt water; 3) The addition of recent organic matter to the bottom waters of the lake from the moat.

Biogeochemistry↗
USGS2010

The anatomy of a (potential) disaster: Volcanoes, behavior, and population viability of the short-tailed albatross (Phoebastria albatrus)

Catastrophic events, either from natural (e.g., hurricane) or human-induced (e.g., forest clear-cut) processes, are a well-known threat to wild populations. However, our lack of knowledge about population-level effects of catastrophic events has inhibited the careful examination of how catastrophes affect population growth and persistence. For the critically endangered short-tailed albatross (Phoebastria albatrus), episodic volcanic eruptions are considered a serious catastrophic threat since approximately 80% of the global population of ???2500 birds (in 2006) currently breeds on an active volcano, Torishima Island. We evaluated how short-tailed albatross population persistence is affected by the catastrophic threat of a volcanic eruption relative to chronic threats. We also provide an example for overcoming the seemingly overwhelming problems created by modelling the population dynamics of a species with limited demographic data by incorporating uncertainty in our analysis. As such, we constructed a stochastic age-based matrix model that incorporated both catastrophic mortality due to volcanic eruptions and chronic mortality from several potential sources (e.g., contaminant exposure, fisheries bycatch) to determine the relative effects of these two types of threats on short-tailed albatross population growth and persistence. Modest increases (1%) in chronic (annual) mortality had a 2.5-fold greater effect on predicted short-tailed albatross stochastic population growth rate (lambda) than did the occurrence of periodic volcanic eruptions that follow historic eruption frequencies (annual probability of eruption 2.2%). Our work demonstrates that periodic catastrophic volcanic eruptions, despite their dramatic nature, are less likely to affect the population viability and recovery of short-tailed albatross than low-level chronic mortality. ?? 2009 Elsevier Ltd.

Biological Conservation↗