USGS Science⌕ Search

SEARCH · USGS Science

Results for “Philosophical Transactions of the Royal Society B: Biological Sciences”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

1,687 records · Page 86Linked to original sources
USGS2024

Simulating present and future groundwater/surface-water interactions and stream temperatures in Beaver Creek, Kenai Peninsula, Alaska

In many places, coldwater ecosystems are facing increasing pressure from anthropogenic warming. This study examined stream temperatures and the water balance in the Beaver Creek watershed on the Kenai Peninsula in south-central Alaska—an area that is experiencing rapid warming. Low-gradient streams near the Kenai coast provide important spawning and rearing habitat for salmon but may be especially vulnerable to rising temperatures, because of long residence times, inflows from abundant riparian wetlands, and reliance on groundwater discharge that may also warm, or decrease in volume with rising evapotranspiration. In recent decades, observed maximum 7-day temperatures have consistently exceeded statistical (regression-based) projections. Here we simulate total streamflows and temperatures with a physics-based model that links the Soil Water Balance, MODFLOW 6 and SNTEMP simulation codes on a 7-day timestep. The model is based on existing data and groundwater levels, instream flows, and stream temperatures collected during 2019–23. Future climate scenarios were developed for 2023–50 from downscaled climate projections. Results indicate that groundwater discharge is about 64 percent of the total streamflow during the months of May through September. Total streamflow and groundwater discharge are expected to remain similar to current conditions through 2050. Stream temperatures are expected to rise; by midcentury, near the Beaver Creek mouth the model predicts 34 to 63 additional days per year with average weekly temperatures above 13 degrees Celsius, 14 to 81 additional days with average weekly temperatures above 15 degrees Celsius, and routine exceedances of 20 degrees Celsius during the warmest periods. Projected stream temperatures vary spatially. Areas of high groundwater inflows in the lower main stem and some tributaries may be most resilient to warming air temperatures during dry conditions. During storm events, groundwater-dominated tributaries may have the coolest stream temperatures.

Alaska↗
USGS2025

Earth Mapping Resources Initiative protocols—Sampling hard-rock mine waste and perpetual mine water sources

Supporting the overarching goal to evaluate critical minerals nationwide, the mine waste characterization effort in the U.S. Geological Survey (USGS) Earth Mapping Resources Initiative has created a series of protocols to standardize sampling carried out under this effort by the participating State geological surveys and their cooperators. The protocols are based on published, reviewed methods that can be deployed in the field. The protocols include (1) collecting and processing composite samples of mine and mill waste, including tailings, waste rock, gangue, heap leach piles, ore stockpiles, slag, or other mineralized and processed materials and (2) collecting and preserving water samples from perpetual or long-term mine water sources. The protocols also specify information to document on field sheets and detail the collection of geospatial data. The analytical methods used by the USGS and USGS contract laboratories are described in this report, including the data delivery pathway for USGS-derived data.

Scientific Investigations Report↗
USGS2025

U.S. Geological Survey geomagnetic variometer data: Capitalizing on seismic infrastructure

The U.S. Geological Survey’s Geomagnetism Program is collaborating with the Earthquake Hazards Program and Global Seismographic Network Program to densify magnetic field observations. This collaboration focuses on the installation of magnetometers, or magnetic variometers, at existing seismic stations. Along with improving the density of space weather observations for hazard monitoring, these data can be used to correct colocated magnetic field induced noise in seismic data. Such corrections are especially useful during time periods of large magnetic storms where the magnetic field‐induced instrument noise can be of similar amplitude to earthquake ground‐motion records.

contiguous United States↗
USGS2026

Geochemical disequilibrium at the brittle-ductile transition

We investigate the microtextural, microchemical, and isotopic effects of late-stage ductile deformation in quartzite mylonites and kyanite–muscovite–quartz veins from the Raft River shear zone (Utah). Quartz microstructures record pervasive disequilibrium, expressed by unannealed features including undulatory extinction, deformation lamellae, and poorly defined fabrics, typical of waning deformation in shear zones. Microchemical disequilibrium is best preserved in kyanite quartzites, where CL-zoned kyanite records repeated fractures, overgrowth, and mineral precipitation, and in muscovite from muscovite-poor quartzite mylonites that shows minor-element zoning consistent with syn-deformational overgrowth on detrital cores. In contrast, muscovite from muscovite-rich kyanite quartzites exhibits minimal chemical zoning. These microchemical variations correlate with 40 Ar/ 39 Ar age systematics. Chemically zoned muscovite preserves variable single-step ages, including ∼150 Ma ages, reflecting retention of detrital cores. In contrast, syndeformational muscovite consistently yields Miocene ages, indicating recrystallization and new growth below argon closure temperatures that reset inherited isotopic signatures. Similar trends are observed in quartzite mylonites, where increasing quartz recrystallization and stronger crystallographic preferred orientations occur toward deeper structural levels. Together, these observations indicate increasing retrograde deformation and recrystallization with depth in the Raft River shear zone and demonstrate that strain-driven recrystallization exerts a first-order control on muscovite ages. We suggest that apparent thermochronologic gradients in retrograde shear zones may reflect recrystallization gradients rather than temperature gradients. Where cooling limits the thermal driving force for recrystallization, isotopic relics are preserved, and local deformation and fluid availability control re-equilibration. Consequently, isotopic disequilibrium—particularly in the 40 Ar/ 39 Ar system—may be the rule rather than the exception of retrograde tectonic environments.

Idaho, Utah↗
USGS2024

A new water temperature modeling approach to predict thermal habitat suitability for nonnative cichlids in Florida rivers

As global temperatures increase, the spatiotemporal arrangement of thermal habitats in Florida rivers may shift, creating the potential for greater dispersal and establishment of nonnative tropical freshwater fishes. To understand how water temperature changes may affect the spatial distribution of these nonnative species, more effective water temperature prediction models are necessary. Currently, most models employ either a generalized air–water temperature relationship or require expensive and complicated tools to measure hydrometeorological factors (e.g. groundwater input). Thus, we developed a novel modeling approach that is accurate, accessible, and cost-effective in allowing fisheries managers to project water temperatures in rivers across Central and North Florida. To characterize the potential for nonnative fishes to spread northward, we evaluated two hardy and abundant species currently found primarily in South Florida: Mayan Cichlid ( Mayaheros urophthalmus ) and Oscar ( Astronotus ocellatus ). Our results show an increase in thermally suitable winter days for both species in 10 of 11 rivers studied, consistent with predicted water temperature warming under 16 climate-change scenarios spanning different levels of air temperature warming (+1 °C, +2 °C, +3 °C, +4 °C) and precipitation/groundwater thermal sensitivity (0, 0.33, 0.66, 1). Considering resource limitations, fisheries managers can use our water temperature modeling approach to predict effects of climate change on Mayan Cichlid and Oscar survival, growth, and dispersal and take actions to manage potential northward movement of these species.

Florida↗
USGS2025

Megafaunal community structure on ferromanganese and phosphorite hardgrounds in the Southern California Borderland

The Southern California Borderland (SCB) is a topographically complex region on the active continental margin that hosts varied hardground habitats, including ferromanganese (FeMn) crusts and phosphorites, marine minerals being considered for resource extraction. The SCB is influenced by seasonal upwelling and terrestrial inputs, and has a well-defined oxygen-minimum zone (OMZ). We analyzed megafaunal community composition, density, and diversity across 41 ROV video transects at 10 SCB hard substrate sites spanning depth (378–2765 m), temperature (1.79–7.96 °C), and oxygen (3.91–105.67 μM) gradients, with varying rock types (FeMn crusts, phosphorites, other rocks). We counted 32,426 individuals representing 146 unique taxa over a total area of 21,935 m 2 . Echinodermata contributed 48 % of the total abundance; Cnidaria 24 %; Porifera 13 %; Annelida 6 %; Arthropoda 6 %; Chordata 2 %; Mollusca, Foraminifera, and Hemichordata <1 %. Megafauna communities showed clear heterogeneity, with density, diversity, and community composition varying among transects within sites and across sites. Rock type recorded no influence on megafaunal density, but habitats that included FeMn crusts had higher diversity and distinct taxonomic composition. Location, depth, and oxygen were the most important variables explaining variance among megafaunal communities, with distinct communities formed at deeper depths and within the OMZ. This study provides baseline information about the megafauna inhabiting SCB hardgrounds, particularly those associated with minerals considered for their resource potential. It extends existing documentation of such communities to greater depths, reveals increased representation of sponges and corals below 1000 m, and highlights the variability within and among deep-sea megafaunal communities, offering context for informed policy decisions.

Southern California borderland↗
USGS2026

Incorporating location uncertainty improves inference with stop-level North American Breeding Bird Survey data

Ecological models should account for uncertainty to be most effective and useful. Yet, uncertainty from model covariates—unlike that from other sources, such as sampling error or process variability—is seldom explicitly incorporated. This can cause underestimates of uncertainty to cascade through model parameter estimates, predictions, and downstream uses. Burner et al. proposed a method for quantifying uncertainty in covariates and incorporating it into models using informative Bayesian priors. This method was applied to stop-level Breeding Bird Survey (BBS) analyses, where land cover uncertainty at each stop arises from substantial stop location uncertainty. A limited validation of model-estimated land cover, using stops with known locations, indicated the method’s potential effectiveness, but it was not rigorously evaluated. We conduct a robust simulation-based test, generating stop locations, extracting land cover, and simulating bird communities across 210 BBS routes in the upper Midwest. We compare 3 models: a “known” model with true land cover, a “naive” model assuming consistent 800-m stop spacing, and a “full” model using informative priors to estimate land cover. Species parameter estimates and predicted prevalence patterns across gradients in land cover from the full model approached those of the known model and were substantially closer to the true values used in simulations relative to those from the naive model. Naive model parameters were more biased relative to the other models, and credible intervals of predicted species prevalence rarely included the true simulated values. The full model also produced land cover covariate estimates closer to true simulation values relative to the mean informative priors. Our results show that, for the BBS, informative priors enable more accurate stop-level analyses despite location uncertainty. In contrast, naive models that ignore this uncertainty yield poor inferences. More broadly, we demonstrate empirically the utility of informative priors to account for covariate uncertainty in ecological models.

Michigan, Minnesota, Wisconson↗
USGS2025

2023 Earthquake Ground-Motion Workshop for the Central and Eastern United States, with a focus on the Gulf and Atlantic Coastal Plains—Agenda and abstracts

The U.S. Geological Survey held a virtual workshop December 7–8, 2023, to share research and ideas about earthquake ground motions in the Central and Eastern United States, with a focus on the Atlantic and Gulf Coastal Plains. The workshop was organized to learn about potential regionalization of ground-motion characteristics (source, path, and site), consider new explanatory variables for site response, and hear and discuss updates on ground-motion research on the Atlantic and Gulf Coastal Plains. The workshop was organized into a series of contributed presentations and three panel discussions held during 2 days. This report documents the agenda, contributed abstracts, and panel summaries.

Scientific Investigations Report↗
USGS2024

Participatory engagement to reduce communication gaps

Underserved communities, especially those in coastal areas in Puerto Rico, face significant threats from natural hazards such as hurricanes and rising sea levels. Limited funding hinders the investment in costly mitigation measures, increasing exposure to natural disasters. Providing coastal resources and data products through effective communication mechanisms is fundamental to improving the well-being of these underserved coastal communities. The overall objectives of the pilot effort to engage and connect with underserved coastal communities in Puerto Rico were the following: (1) compile a comprehensive database of the projects and resources relevant to natural hazards in Puerto Rico; (2) foster connections with Puerto Rican interested parties to better understand their priorities regarding coastal hazards and provide them with pertinent U.S. Geological Survey (USGS) resources; and (3) identify knowledge gaps to guide future USGS projects in Puerto Rico. Here we outline our participatory engagement framework and process, along with two specific resources developed with the information collected from this effort. These resources are available in English and Spanish and consist of user-friendly, non-technical information products. Among them are: (1) a website where users can learn about USGS research on landslides, hurricanes, earthquakes, water resources, coastal hazards, tsunamis, and ecosystem hazards and environmental contaminants, and (2) a geonarrative highlighting shoreline changes in Puerto Rico with sections on historical shoreline trends, hurricane impacts, and potential solutions that could help protect communities and mitigate coastal hazards. Continuing participatory engagement in future projects could enhance the accessibility and usability of natural hazards resources within the community.

San Juan↗
USGS2026

Key minerals in energy transmission

The electrical grid relies on minerals with unique properties to transform, transmit, and convert electricity. Transmission needs are growing—to support the expansion of data centers and link diverse energy resources into the grid. This expansion will require greater quantities of minerals. Although some minerals are produced in the United States, the United States relies on imports for others. This infographic shows the key minerals that support energy transmission, and how reliant the United States is on imports for these minerals.

General Information Product↗
USGS2025

A soil velocity model for improved ground motion simulations in the U. S. Pacific Northwest

Near-surface seismic velocity structure may significantly impact the intensity, duration, and frequency content of ground shaking during an earthquake. In this study, we compile 649 shear wave velocity (Vs) profiles throughout the U.S. Pacific Northwest and southern British Columbia (PNW) and use these measured profiles to develop a representative soil velocity model for four major Holocene soil provinces: Puget Lowlands, Willamette Valley, fill and alluvium, and `other' soils. The resulting soil velocity model shows good agreement to measured data for a wide range of site conditions, with variability between different geologic domains reflecting fundamental differences in depositional environments. We then show that using this regional soil velocity model in simulations of the 2001 M6.8 Nisqually, Washington earthquake improves the fit to observed high-frequency (≥ 0.5 Hz) ground motions in the Puget Sound region compared to simulations that do not incorporate shallow (≤ 200 m) seismic velocity structure. Overall, this work shows that incorporating localized soil velocity profiles into seismic velocity models is important for accurately estimating high-frequency ground motion and regional seismic hazard in earthquake simulations. Future earthquake simulations and hazard studies in the PNW could incorporate these soil velocity profiles to capture the region's distinct site response characteristics.

Washington↗
USGS2025

Mapping a Carrington storm

A map is presented of median 1-min-resolution peak geoelectric-field strength across the United States as would be induced by magnetic storms as intense as the 2 September 1859 Carrington storm. The map is constructed from two data sets: Magnetometer time series from 22 ground-based observatories recording 40 magnetic storms, and surface impedance tensors derived from magnetotelluric measurements acquired at 1616 survey sites across the contiguous United States. Carrington-class storm geoelectric fields are likely to be very strong in the United States East and Midwest; > 5.00 V/km at many places. In Virginia, strengths would likely range from 30.30 V/km, with a 68% confidence interval of [19.44,47.20] V/km, to as low as 0.05 [0.03,0.07] V/km. Comparison of model geopotentials with those measured on 30 long lines, indicates errors of about 18%. A Carrington-class storm would likely induce geoelectric fields with strengths 55% greater than for the 13–14 March 1989 storm.

contiguous United States↗
USGS2025

Strong shaking from past Cascadia Subduction Zone earthquakes encoded in coastal landforms

Strong earthquakes along subduction zones are often devastating events, but sparse records along some tectonic margins limit our understanding of seismic hazards. Constraining shaking intensities is critical, especially in subduction zones with infrequent but large-magnitude earthquakes like the Cascadia Subduction Zone (CSZ), where the lack of recorded ground motions has led to uncertainty in the severity and potential impacts of future earthquakes. Here we fill this observational gap with a novel inventory of quantitative estimates of past shaking intensities from geotechnical modeling of coastal landforms. One hundred fifty-four deep-seated landslides and 65 fragile geologic features constrain minimum and maximum peak ground accelerations, respectively. These estimates are broadly consistent with model predictions of M9 ruptures, suggesting strong shaking of 0.4–0.8 g during past CSZ earthquakes. Local discrepancies between our geologic shaking constraints and earthquake simulations may inform past rupture behavior, leading to better predictions of shaking intensity for future earthquakes.

California, Oregon, Washington↗
USGS2026

Variability and consistency in wildfire susceptibility: Insights from a national compilation

Background Wildfire risk in the United States is rising and remains a land management priority. The quantitative wildfire risk assessment (QWRA) framework integrates fuels, topography, weather and values at risk to estimate the potential change in value from wildfire. Within this, response functions (RFs) represent how values respond to fire intensity. These are often based on expert judgment, but variation across assessments is unclear. Aims This study uses data from the US Geological Survey (USGS) Wildfire Hazard and Risk Assessment Clearinghouse to characterize consistency and variation across categories and contexts. Methods We applied descriptive statistics to summarize RFs, using tables, box-and-whisker plots and heat maps stratified by highly valued resource or asset (HVRA) category and spatial scale. Key results RFs and value definitions vary, especially for ecosystem-related resources. Some functions, such as for buildings in the wildland–urban interface (WUI), translate well across contexts, while others require more input. Conclusions Some functions are broadly transferable, while others need customization. This analysis provides references and starting points for improvement to RFs in QWRAs. Interpretations Expanding the clearinghouse and dataset and building more transparency in expert elicitation can build trust among communities, agencies and end-users, and can support efficient use of limited resources to mitigate wildfire risk.

International Journal of Wildland Fire↗
USGS2026

Subsurface vertical connectivity shapes solute transport to montane streams: Insights from watershed-scale geophysics-informed modeling

Headwater catchments provide essential water and nutrients to downstream ecosystems. The timing and evolution of their transport is shaped in part by the “invisible” subsurface structure but have been largely unexplored at the watershed scale. This raises a fundamental question: how and to what extent does subsurface structure influence streamflow and solute transport in montane watersheds? Here, we test controls of three-dimensionally resolved subsurface structure on solute transport, which reflects source waters and water residence time. We integrate the geophysically mapped architecture of Coal Creek, a headwater catchment in the Colorado River Basin, into numerical flow-transport models. Our results reveal greater vertical connectivity elongates flow paths and enhances deep groundwater contributions to streams, therefore substantially influencing the timing and magnitude of solute transport. In contrast, watershed-integrated outlet discharge can be predicted without high-resolution subsurface information. These findings demonstrate incorporating subsurface architecture is critical for predicting ecosystem health and contaminant transport.

Colorado↗
USGS2026

Transit time modeling framework for predicting freshwater salinization in urban catchments

The salinity of inland freshwaters is rising globally, particularly in urban watersheds where winter road deicers are widely applied. Attributing stream salinity dynamics to specific sources and transport pathways remains challenging due to episodic salt inputs, engineered drainage, and strong coupling between hydrology and subsurface storage. We present a modeling framework that couples climate-driven deicer build-up and wash-off with transient transit time distribution theory to simulate salt transport through drainage, interflow, and groundwater pathways. Applied to an urban watershed in Northern Virginia (USA), the model reproduces ten years of high-frequency stream salinity measurements across daily-to-decadal timescales. The calibrated model implies an average deicer application of 206 tonnes Cl −1 yr −1 , or roughly one 20 kg bag of rock salt person −1 yr −1 when normalized by the 20,000 people living in the watershed. In winter months, higher infiltration routes a large fraction of snowmelt and deicers into shallow subsurface pathways, enhancing vadose-zone and interflow contributions to stream salinity. Limited subsurface storage capacity and seasonal hydrologic turnover flush excess chloride from the vadose zone and groundwater during subsequent summer storms. By linking climate-driven deicer inputs, hydrologic connectivity, and stream water age, the framework provides a transferable basis for diagnosing and managing freshwater salinization in urban watersheds.

Virginia↗
USGS2026

Indirect mineral import reliance and provenance

Mineral commodity supply chain analyses rely on international trade data reported by individual countries as quantities of a mineral commodity form imported from (or exported to) a partner. However, export quantities frequently exceed a country’s domestic production, or occur when no production data are reported, suggesting that the trade partner is merely an intermediary in a transshipment. These discrepancies can result in misleading conclusions regarding supply chain vulnerabilities and dependencies. We present a two-stage methodology to reconcile gaps between reported material sources and actual producers. First, we construct trade networks for specific mineral forms, treating production as a type of import to distinguish producing nations from entrepôts. By tracing flows through these networks, we attribute a target country’s imports to original producers via both direct (in a single trade link) and indirect (transferring through intermediaries) pathways. Second, these production-attributed flows are incorporated into multi-stage supply chains to determine the upstream provenance of feedstock for domestic refining and processing. This approach provides a more representative picture of trade reliance. For example, while the United States (U.S.) Geological Survey reports no imports of unwrought antimony metal from Russia in 2022 (U.S. Geological Survey (2025). Mineral Commodity Summaries 2025. 10.3133/mcs2025), our analysis reveals that over 16% of U.S. imports can be traced back to Russian mining through intermediate processing in countries such as China, India, and Vietnam. Additionally, our analysis of the aluminum supply chain shows that while the U.S. is reported as 52% net import reliant on aluminum materials in 2022, it is 100% reliant on foreign bauxite, 7% of which arrived indirectly. This unreported reliance, which is predominantly tied to bauxite mined in Brazil (43%) and Jamaica (28%), highlights our methods ability to capture the supply chain’s dependence on foreign feedstock that may be missing in single-stage trade data.

Mineral Economics↗
USGS1977

A multi-channel digital telemetry system for low frequency geophysical data

An inexpensive general purpose digital telemetry system for collection of low frequency geophysical data from U.S. Geological Survey instruments (eg. tilt, strain, gravity, creep, water level, radon, magnetic field, resistivity, telluric current, temperature, etc.) has been designed and built. This system provides data for a more general interactive data acquisition, retrieval and analysis system. The field stations are self-contained, battery operated and housed in weather proof containers. Each accepts up to 15 analog data inputs in the range of -5 to +5 volts. The dynamic range is 70db. The units transmit information as FSK (Frequency Shift Keyed) tones onto either a phone line or radio link with up to 150 transmitters sharing one line. The average power consumption is 0.06 nR watts where n is the 1 number of input channels transmitted and R is the sample rate in minutes -1 . The central receiver-recorder unit accepts and decodes the FSK tones and converts, formats and records the digital data together with time information and station identification on IBM combatible magnetic tape. The digital data are also converted and recorded in analog form for visual monitoring.

Open-File Report↗