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Aspergillosis (Avian) case definition for wildlife

Diagnostic laboratories receive carcasses and samples for diagnostic evaluation and pathogen/toxin detection. Case definitions bring clarity and consistency to the evaluation process. Their use within and between organizations allows more uniform reporting of diseases and etiologic agents. The intent of a case definition is to provide scientifically based criteria for determining: (a) if an individual carcass has a specific disease and degree of confidence in that diagnosis and (b) if there is evidence of a pathogen or toxin in a carcass or sample (for example, swab, tissue sample, skin scraping, blood/serum sample, environmental sample, or other). This case definition is specific to aspergillosis and applies to all avian species.

Techniques and Methods

Unlocking ecological insights from sub-seasonal visible-to-shortwave infrared imaging spectroscopy: The SHIFT campaign

We stand at the threshold of a transformative era in Earth observation, marked by space-borne visible-to-shortwave infrared (VSWIR) imaging spectrometers that promise consistent global observations of ecosystem function, phenology, and inter- and intra-annual change. However, the full value of repeat spectroscopy, the information embedded within different temporal scales, and the reliability of existing algorithms across diverse ecosystem types and vegetation phenophases have remained elusive due to the absence of suitable sub-seasonal spectroscopy data. In response, the Surface Biology and Geology (SBG) High-Frequency Time Series (SHIFT) campaign was initiated during late February 2022 in Santa Barbara County, California. SHIFT, designed to support NASA's SBG mission, addressed mission scoping, scientific advancement, applications development, and community building. This ambitious endeavor included weekly Airborne Visible InfraRed Imaging Spectrometer-Next Generation (AVIRIS-NG) imagery acquisitions for 13 weeks (spanning February 24 to May 29, 2022), accompanied by coordinated terrestrial vegetation and coastal aquatic data collection. We describe the rich datasets collected and illustrate how the complex sub-seasonal patterns of change can be linked to biological science and applications, surpassing insights from multispectral observations. Leveraging open-source processing methods and cloud-based analysis tools, the SHIFT campaign showcases the readiness of the scientific community to harness ecological insights from remotely sensed hyperspectral time series. We provide an overview of SHIFT's goals, data collections, preliminary results, and the collaborative efforts of early career scientists committed to unlocking the transformative potential of high-frequency time series data from space-borne VSWIR imaging spectrometers.

Ecosphere

Factors regulating the potential for freshwater mineral soil wetlands to function as natural climate solutions

There are increasing global efforts and initiatives aiming to tackle climate change and mitigate its impacts via natural climate solutions (NCS). Wetlands have been considered effective NCS given their capacity to sequester and retain atmospheric carbon dioxide (CO 2 ) while also providing a myriad of other ecosystem functions that can assist in mitigating the impacts of climate change. However, wetlands have a dual impact on climate, influencing the atmospheric concentrations of both CO 2 and methane (CH 4 ). The cooling effect associated with wetland CO 2 sequestration can be counterbalanced by the warming effect caused by CH 4 emissions from wetlands. The relative ability of wetlands to sequester CO 2 versus emit CH 4 is dependent on a suite of interacting physical, chemical, and biological factors, making it difficult to determine if/which wetlands are considered important NCS. The fact that wetlands are embedded in landscapes with surface and subsurface hydrological connections to other wetlands (i.e., wetlandscapes) that flow over and through geochemically active soils and sediments adds a new layer of complexity and poses further challenges to understanding wetland carbon sequestration and greenhouse gas fluxes at large spatial scales. Our review demonstrates how additional scientific advances are required to understand the driving mechanisms associated with wetland carbon cycling under different environmental conditions. It is vital to understand wetland functionality at both wetland and wetlandscape scales to effectively implement wetlands as NCS to maximize ecological, social, and economic benefits.

Wetlands

Towards mobile wind measurements using joust configured ultrasonic anemometer for applications in gas flux quantification

Small uncrewed aerial systems (sUASs) can be used to quantify emissions of greenhouse and other gases, providing flexibility in quantifying these emissions from a multitude of sources, including oil and gas infrastructure, volcano plumes, wildfire emissions, and natural sources. However, sUAS-based emission estimates are sensitive to the accuracy of wind speed and direction measurements. In this study, we examined how filtering and correcting sUAS-based wind measurements affects data accuracy by comparing data from a miniature ultrasonic anemometer mounted on a sUAS in a joust configuration to highly accurate wind data taken from a nearby eddy covariance flux tower (aka the Tower). These corrections had a small effect on wind speed error, but reduced wind direction errors from 50° to >120° to 20–30°. A concurrent experiment examining the amount of error due to the sUAS and the Tower not being co-located showed that the impact of this separation was 0.16–0.21 ms − 1 "> ms − 1 , a small influence on wind speed errors. Lower wind speed errors were correlated with lower turbulence intensity and higher relative wind speeds. There were also some loose trends in diminished wind direction errors at higher relative wind speeds. Therefore, to improve the quality of sUAS-based wind measurements, our study suggested that flight planning consider optimizing conditions that can lower turbulence intensity and maximize relative wind speeds as well as include post-flight corrections.

Alaska

Reference 1D seismic velocity models for volcano monitoring and imaging: Methods, models, and applications

Seismic velocity models of the crust are an integral part of earthquake monitoring systems at volcanoes. 1D models that vary only in depth are typically used for real‐time hypocenter determination and serve as critical reference models for detailed 3D imaging studies and geomechanical modeling. Such models are usually computed using seismic tomographic methods that rely on P ‐ and S ‐wave arrival‐time picks from numerous earthquakes recorded at receivers around the volcano. Traditional linearized tomographic methods that jointly invert for source locations, velocity structure, and station corrections depend critically on having reasonable starting values for the unknown parameters, are susceptible to local misfit minima and divergence, and often do not provide adequate uncertainty information. These issues are often exacerbated by sparse seismic networks, inadequate distributions of seismicity, and/or poor data quality common at volcanoes. In contrast, modern probabilistic global search methods avoid these issues only at the cost of increased computation time. In this article, we review both approaches and present example applications and comparisons at several volcanoes in the United States, including Mount Hood (Oregon), Mount St. Helens (Washington), the Island of Hawai’i, and Mount Cleveland (Alaska). We provide guidance on the proper usage of these methods as relevant to challenges specific to volcano monitoring and imaging. Finally, we survey‐published 1D P ‐wave velocity models from around the world and use them to derive a generic stratovolcano velocity model, which serves as a useful reference model for comparison and when local velocity information is sparse.

Seismological Research Letters

Large springs in the Valley and Ridge Province in Tennessee

Approximately 2,700 miscellaneous discharge measurements for 171 large springs in 28 counties of East Tennessee, predominantly within the Valley and Ridge physiographic province, were analyzed statistically and results tabulated to summarize data useful to the Appalachian Valleys-Piedmont Regional Aquifer System Analysis study. The number of measurements at each spring ranged from 1 to 65. Information from each spring includes station numbers, latitude, longitude, spring name and where data are sufficient, an estimate of the mean discharge and the discharge exceeded by 75%, 50%, and 25% of the miscellaneous measurements. Data are referenced to locations on a 1:1,000 ,000-scale map. The highest mean spring discharge was 32.2 cu ft/sec (14,5000 gallons/min).

Tennessee

Niobium-rich minerals from the Sheep Creek carbonatite-related deposits, Montana, USA

The Sheep Creek area in southwest Montana contains a number of small, tabular, carbonatite-related deposits that are rich in Nb- and REE-minerals. Two of the “vein-dikes” were mined at a small scale for Nb in the late 1950s. The most abundant Nb-bearing minerals are columbite-(Fe), nioboaeschynite-(Ce), baotite, and two varieties of Ti-Nb-Fe-oxide. An early oxide with Ti/Nb (atomic) near unity later broke down to a mixture of columbite + TiO2 with distinctly lower Nb content. Zircon intergrown with the Nb-REE minerals was dated by U-Pb methods to 116±2 Ma. This age is in agreement with previous dating (Th-Pb on monazite, Re-Os on molybdenite), and indicates that the Sheep Creek deposits are early Cretaceous in age.

Montana

Permafrost thaw controls iron flux from wetlands and sulfide-bearing rocks to Arctic rivers and streams

Recent warming has caused widespread iron mobilization into Arctic waterbodies that degrades ecosystems and threatens natural resources. Yet, understanding where and when iron flux occurs remains limited. Here, we investigate iron loading across regional to local scales in Arctic Alaska using climate, water chemistry, and borehole data together with mapped geology and permafrost presence. We show that both anoxic microbial iron reduction and acid rock drainage from iron-sulfide oxidation mobilize iron. Iron influx is strongly associated with lowland wetlands, sulfide-rich upland bedrock, and near-surface permafrost. Acid rock drainage chemistry correlates very strongly with the depth of seasonal thaw above permafrost from the previous year, indicating a one-year lag. These findings clarify the spatial and temporal dynamics of Arctic river rusting, provide a mechanistic understanding of the phenomenon, and may allow anticipation of its occurrence and assessment of its implications for aquatic ecosystem health and subsistence resources under ongoing climate change.

Alaska

The Europa Imaging System (EIS) investigation

The Europa Imaging System (EIS) consists of a Narrow-Angle Camera (NAC) and a Wide-Angle Camera (WAC) that are designed to work together to address high-priority science objectives regarding Europa’s geology, composition, and the nature of its ice shell. EIS accommodates variable geometry and illumination during rapid, low-altitude flybys with both framing and pushbroom imaging capability using rapid-readout, 8-megapixel (4k × 2k) detectors. Color observations are acquired using pushbroom imaging with up to six broadband filters. The data processing units (DPUs) perform digital time delay integration (TDI) to enhance signal-to-noise ratios and use readout strategies to measure and correct spacecraft jitter. The NAC has a 2.3° × 1.2° field of view (FOV) with a 10-μrad instantaneous FOV (IFOV), thus achieving 0.5-m pixel scale over a swath that is 2 km wide and several km long from a range of 50 km. The NAC is mounted on a 2-axis gimbal, ±30° cross- and along-track, that enables independent targeting and near-global (≥90%) mapping of Europa at ≤100-m pixel scale (to date, only ∼15% of Europa has been imaged at ≤900 m/pixel), as well as stereo imaging from as close as 50-km altitude to generate digital terrain models (DTMs) with ≤4-m ground sample distance (GSD) and ≤0.5-m vertical precision. The NAC will also perform observations at long range to search for potential erupting plumes, achieving 10-km pixel scale at a distance of one million kilometers. The WAC has a 48° × 24° FOV with a 218-μrad IFOV, achieving 11-m pixel scale at the center of a 44-km-wide swath from a range of 50 km, and generating DTMs with 32-m GSD and ≤4-m vertical precision. The WAC is designed to acquire three-line pushbroom stereo and color swaths along flyby ground-tracks.

Space Science Reviews

A ground-motion model derived using a generalized mean rupture distance for large slab interface earthquakes

Source–station distance is a central input to ground‐motion models (GMMs) for predicting seismic shaking. GMM development uses distance metrics including the Joyner–Boore distance, which is the shortest distance from an observation point to the surface projection of the earthquake rupture, and R rup the shortest distance to the rupture in three dimensions. Thompson and Baltay (2018) proposed the generalized mean rupture distance R p to address observed near‐fault ground‐motion saturation. R p accounts for the contribution to the shaking of all parts of the rupture and provides a simple method for incorporating spatially variable slip. They used R p to develop a GMM for shallow crustal earthquakes, assuming uniform slip. Here, we investigate the improvement offered by an R p ‐based GMM for large subduction interface earthquakes by recalibrating the path term for a published GMM ( Parker et al. , 2022 ) using R p derived from distributed slip models (DSMs). Inspection of within‐event and total residuals indicates that the recalibrated model fits the data at least as well as an alternative in which the path term was recalibrated using R rup and the same dataset. Incorporating slip information in its entirety or trimming the DSM geometry is preferable to assuming uniform moment release on a prescribed model fault that extends beyond the actual ruptured area. R p tuned to minimize model uncertainty is closer to the maximum distance to rupture for peak ground velocity (PGV) than acceleration, possibly reflecting the contribution to high‐frequency shaking of slip on local asperities. However, when the moment is concentrated far from stations, PGV is fit adequately with R p closer to R rup ⁠ . Our results suggest incorporating slip‐derived moment release through R p could improve GMMs for slab interface events, especially if the implementation of R p ‐based models is refined using a larger dataset of earthquakes with greater geographic diversity to account for regional ground‐motion variations.

Seismological Research Letters

Deep-ocean macrofaunal assemblages on ferromanganese and phosphorite-rich substrates in the Southern California Borderland

Mineral-rich hardgrounds, such as ferromanganese (FeMn) crusts and phosphorites, occur on seamounts and continental margins, gaining attention for their resource potential due to their enrichment in valuable metals in some regions. This study focuses on the Southern California Borderland (SCB), an area characterized by uneven and heterogeneous topography featuring FeMn crusts, phosphorites, basalt, and sedimentary rocks that occur at varying depths and are exposed to a range of oxygen concentrations. Due to its heterogeneity, this region serves as an optimal setting for investigating the relationship between mineral-rich hardgrounds and benthic fauna. This study characterizes the density, diversity, and community composition of macrofauna (>300 μm) on hardgrounds as a function of substrate type and environment (depth and oxygen ranges). Rocks and their macrofauna were sampled quantitatively using remotely operated vehicles (ROVs) during expeditions in 2020 and 2021 at depths above, within, and below the oxygen minimum zone (OMZ). A total of 3,555 macrofauna individuals were counted and 416 different morphospecies (excluding encrusting bryozoans and hydrozoans) were identified from 82 rocks at depths between 231 and 2,688 m. Average density for SCB macrofauna was 11.08 ± 0.87 ind. 200 cm −2 and mean Shannon-Wiener diversity per rock (H′ [loge] ) was 2.22 ± 0.07. A relationship was found between substrate type and macrofaunal communities. Phosphorite rocks had the highest H′ of the four substrates compared on a per-rock basis. However, when samples were pooled by substrate, FeMn crusts had the highest H′ and rarefaction diversity. Of all the environmental variables examined, water depth explained the largest variance in macrofaunal community composition. Macrofaunal density and diversity values were similar at sites within and outside the OMZ. This study is the first to analyze the macrofaunal communities of mineral-rich hardgrounds in the SCB, which support deep-ocean biodiversity by acting as specialized substrates for macrofaunal communities. Understanding the intricate relationships between macrofaunal assemblages and mineral-rich substrates may inform effects from environmental disruptions associated with deep-seabed mining or climate change. The findings contribute baseline information useful for effective conservation and management of the SCB and will support scientists in monitoring changes in these communities due to environmental disturbance or human impact in the future.

California

The 2023 US 50-State National Seismic Hazard Model: Overview and implications

The US National Seismic Hazard Model (NSHM) was updated in 2023 for all 50 states using new science on seismicity, fault ruptures, ground motions, and probabilistic techniques to produce a standard of practice for public policy and other engineering applications (defined for return periods greater than ∼475 or less than ∼10,000 years). Changes in 2023 time-independent seismic hazard (both increases and decreases compared to previous NSHMs) are substantial because the new model considers more data and updated earthquake rupture forecasts and ground-motion components. In developing the 2023 model, we tried to apply best available or applicable science based on advice of co-authors, more than 50 reviewers, and hundreds of hazard scientists and end-users, who attended public workshops and provided technical inputs. The hazard assessment incorporates new catalogs, declustering algorithms, gridded seismicity models, magnitude-scaling equations, fault-based structural and deformation models, multi-fault earthquake rupture forecast models, semi-empirical and simulation-based ground-motion models, and site amplification models conditioned on shear-wave velocities of the upper 30 m of soil and deeper sedimentary basin structures. Seismic hazard calculations yield hazard curves at hundreds of thousands of sites, ground-motion maps, uniform-hazard response spectra, and disaggregations developed for pseudo-spectral accelerations at 21 oscillator periods and two peak parameters, Modified Mercalli Intensity, and 8 site classes required by building codes and other public policy applications. Tests show the new model is consistent with past ShakeMap intensity observations. Sensitivity and uncertainty assessments ensure resulting ground motions are compatible with known hazard information and highlight the range and causes of variability in ground motions. We produce several impact products including building seismic design criteria, intensity maps, planning scenarios, and engineering risk assessments showing the potential physical and social impacts. These applications provide a basis for assessing, planning, and mitigating the effects of future earthquakes.

Earthquake Spectra

Groundwater dominates snowmelt runoff and controls streamflow efficiency in the western United States

Climate change in seasonally snow-covered mountain catchments is reducing water supply and decreasing streamflow predictability. Here, we use tritium age dating to show that contrary to the common assumption that snowmelt quickly contributes to runoff, streamflow during snowmelt in western US catchments is dominated by older groundwater. The average age of streamwater during snowmelt runoff (5.7 ± 4.3 years) was intermediate to the average age of groundwater (10.4 ± 4.5 years) and recent precipitation, indicating that 58% (±34%) of snowmelt runoff was derived from groundwater. Water ages, streamflow, and groundwater storage were mediated by bedrock geology: low-permeability hard rock/shale catchments exhibited younger ages, less storage, and more efficient streamflow generation than high-permeability sandstone/clastic catchments. Our results demonstrate that snowmelt runoff is the result of multiple prior years of climate mediated by groundwater storage. Including these interactions will be crucial for predicting water resources as climate and landscape changes accelerate.

western united States

Parsimonious high-resolution landslide susceptibility modeling at continental scales

Landslide susceptibility maps are fundamental tools for risk reduction, but the coarse resolution of current continental-scale models is insufficient for local application. Complex relations between topographic and environmental attributes characterizing landslide susceptibility at local scales are not transferrable across areas without landslide data. Existing maps with multiple susceptibility classifications under-represent landslide potential in moderate and gently sloping terrain. We leverage an extensive landslide database ( N = 613,724), a high-resolution digital elevation model (10-m), and high-performance computing resources, to develop a new nationwide susceptibility map for the contiguous United States, Hawaii, Alaska, and Puerto Rico. We calculate four alternative linear and nonlinear thresholds of topographic slope and relief using an objective split-sample calibration. We down-sample our results to a 90-m grid to account for uncertainty in the digital elevation model and landslide position, and evaluate these thresholds' ability to differentiate areas of greater susceptibility. The less conservative nonlinear model optimally balances our priorities of capturing observed landslides (99%) while minimizing area covered by susceptible terrain (43%). Independent evaluation with four statewide landslide inventories ( N = 172,367) reinforces our model selection but highlights spatially variable performance. Therefore, we propose a novel approach to susceptibility classification using the concentration of landslide-prone terrain within each down-sampled grid. While landslides are possible within any cells containing susceptible terrain, those with the highest concentration capture the majority of observed landslides. Our new map characterizes landside susceptibility more consistently than prior models; our transparent classification approach also provides flexibility for accommodating different tolerances in risk reduction measures.

AGU Advances

Regional variations in sea ice and primary productivity in the Bering Sea during Marine Isotope Stage 11

Marine Isotope Stage (MIS) 11 (424-374 ka) has long been an analog for Holocene climate, because it is the most recent interglacial period with similar orbital conditions. However, there is significant global and regional variability in the climate response to MIS 11 warmth. Here, we review sediment core records from across the Bering Sea to investigate changes in paleoceanographic conditions during Marine Isotope Stages 12-10. Sea ice was present over much of the Bering Sea during MIS 11, but today, none of the sites investigated are ever ice-covered. This suggests that sea ice regimes in the Bering Sea during MIS 11 were different to those of the Holocene. There are also regional differences in the response of sea ice to MIS 11 warming. At the Umnak Plateau, Southeastern Bering Sea, sea ice concentrations decline during deglaciation, but they remain high at the slope sites until Peak MIS 11. Sea ice re-advances over the Umnak Plateau during peak interglacial warmth, at the same time that it declines over the slope sites. Late MIS 11 is characterized by high concentrations of seasonal sea ice at the Umnak Plateau, whilst sea ice at the slope sites fluctuates between consolidated and unconsolidated ice cover. This east-west dichotomy may be explained by changes in the behavior of the Aleutian Low. Productivity increases dramatically during deglaciation due to increased upwelling and sea level rise bringing fresh nutrients into the oceans. This is characterized by increased diatom productivity, increased terrestrial carbon deposition, and laminations at all sites.

Alaska

Advancing sustainable groundwater management with a hydro-economic system model: Investigations in the Harney Basin, Oregon

Groundwater resources frequently trend toward unsustainable levels because, absent effective institutions, individual water users generally act independently without considering the impacts on other users. Hydro-economic models (HEMs) of human-natural systems can play a positive role toward successful groundwater management by yielding valuable knowledge and insight. The current study explores how an HEM that captures essential physical and economic characteristics of a system can shed light on the system's processes and dynamics to benefit stakeholders, managers, and also researchers. These propositions are illustrated using the Harney Basin, Oregon, which has seen large groundwater declines in the past 20 years. The HEM shows that: (a) although current groundwater pumping rates will gradually raise costs and reduce well yields, irrigators gain the highest aggregate economic return by continuing current pumping; (b) lowland areas of the basin are hydrologically connected, which limits the efficacy of remedies focused on regulations only in some portions of the basin; (c) community expectations regarding the efficacy of several proposed solutions are overly optimistic; and (d) the study's scenarios identify interventions that would stabilize the groundwater system and prevent additional adverse impacts on residential and livestock wells and groundwater-dependent ecosystems. These interventions would require limiting groundwater pumping by nearly half and reducing annual profits by $7.5–$9.0M. The HEM also demonstrated its value to researchers: its insights shifted attention toward questions about Oregon's existing groundwater institutions and their inability to adaptively manage the transition from abundant groundwater to scarce groundwater in a timely manner.

Oregon

Comparing subduction ground-motion models to observations for Cascadia

We evaluate Cascadia subduction ground-motion models (GMMs), considered for the 2023 US National Seismic Hazard Model (NSHM) update, by comparing observations to model predictions. The observations comprise regional recordings from intraslab earthquakes, including contributions from 2021 and 2022 events in southern Cascadia and global records from interface earthquakes. Since the 2018 NSHM update, new GMMs for Cascadia have been published by the Next Generation Attenuation (NGA)-Subduction Project that require independent evaluation. In the regional intraslab comparisons, we highlight a characteristic frequency dependence for Cascadia data, with short periods having lower ground motions and longer periods being comparable to other subduction zones. We evaluate differences in northern and southern Cascadia and find that the NGA-Subduction GMMs developed using southern Cascadia data perform better in this region than the model that did not consider these data. We compare ground-motion variability in Cascadia with the NGA-Subduction model predictions and find differences at short periods ( T = 0.1 s) due to the use of global versus regional data in the development of these models. Moreover, the within-event component of aleatory variability from the GMMs overpredicts the standard deviation of Cascadia recordings at very short periods ( T < 0.05 s). Using global interface earthquakes as a proxy to evaluate the Cascadia GMMs, we find long-period overprediction from a simulation-based GMM and some of the empirical GMMs. When comparing recent observations, we find a similar misfit to GMMs and the 2010 and 2022 Ferndale earthquakes. Finally, we observe different basin amplification factors arising in different subsets of the data, which indicate that differences in basin factors between empirical GMMs could arise from the data selection choices by the developers. As part of evaluating the regional basin terms, we apply basin amplification factors from the magnitude 9 Cascadia earthquake simulations to the empirical GMMs for interface earthquakes. The comparisons presented in this study indicate that the NGA-Subduction GMMs for Cascadia perform well relative to observations and older subduction GMMs.

British Columbia, California, Oregon, Washington