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At least 1,531 records · Page 85Linked to original sources

USGS2013

Frequent cross-species transmission of parvoviruses among diverse carnivore hosts

Although parvoviruses are commonly described in domestic carnivores, little is known about their biodiversity in nondomestic species. A phylogenetic analysis of VP2 gene sequences from puma, coyote, gray wolf, bobcat, raccoon, and striped skunk revealed two major groups related to either feline panleukopenia virus (“FPV-like”) or canine parvovirus (“CPV-like”). Cross-species transmission was commonplace, with multiple introductions into each host species but, with the exception of raccoons, relatively little evidence for onward transmission in nondomestic species.

Alabama, Arkansas, Arizona, Colorado, Connecticut,↗

USGS2014

Genetic evidence of local exploitation of Atlantic salmon in a coastal subsistence fishery in the Northwest Atlantic

Fisheries targeting mixtures of populations risk the over utilization of minor stock constituents unless harvests are monitored and managed. We evaluated stock composition and exploitation of Atlantic salmon in a subsistence fishery in coastal Labrador, Canada using genetic mixture analysis and individual assignment with a microsatellite baseline (15 loci, 11 829 individuals, 12 regional groups) encompassing the species western Atlantic range. Bayesian and maximum likelihood mixture analyses of fishery samples over six years (2006-2011; 1 772 individuals) indicate contributions of adjacent stocks of 96-97%. Estimates of fishery associated exploitation were highest for Labrador salmon (4.2-10.6% per year) and generally < 1% for other regions. Individual assignment of fishery samples indicated non-local contributions to the fishery (e.g., Quebec, Newfoundland) were rare and primarily in southern Labrador, consistent with migration pathways utilizing the Strait of Belle Isle. This work illustrates how genetic analysis of mixed stock Atlantic salmon fisheries in the northwest Atlantic using this new baseline can disentangle exploitation and reveal complex migratory behaviours.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2017

Is motivation important to brook trout passage through culverts?

Culverts can restrict movement of stream-dwelling fish. Motivation to enter and ascend these structures is an essential precursor for successful passage. However, motivation is challenging to quantify. Here, we use attempt rate to assess motivation of 447 brook trout ( Salvelinus fontinalis ) entering three culverts under a range of hydraulic, environmental, and biological conditions. A passive integrated transponder system allowed for the identification of passage attempts and success of individual fish. Attempt rate was quantified using time-to-event analysis allowing for time-varying covariates and recurrent events. Attempt rate was greatest during the spawning period, at elevated discharge, at dusk, and for longer fish. It decreased during the day and with increasing number of conspecifics downstream of the culvert. Results also show a positive correlation between elevated motivation and successful passage. This study enhances understanding of factors influencing brook trout motivation to ascend culverts and shows that attempt rate is a dynamic phenomenon, variable over time and among individuals. It also presents methods that could be used to investigate other species’ motivation to pass natural or anthropogenic barriers.

Quebec↗

USGS2018

Walleye recruitment success is less resilient to warming water temperatures in lakes with abundant largemouth bass populations

Lakes respond heterogeneously to climate, with implications for fisheries management. We analyzed walleye ( Sander vitreus ) recruitment to age-0 in 359 lakes in Wisconsin, USA, to ( i ) quantify the relationship between annual water temperature degree days (DD) and walleye recruitment success and ( ii ) identify the influence of lake characteristics — area, conductivity, largemouth bass ( Micropterus salmoides ) catch rates, and mean DD — on this relationship. The relationship between walleye recruitment and annual DD varied among lakes and was not distinguishable from zero overall (posterior mean = −0.11, 90% CI = −0.34, 0.15). DD effects on recruitment were negative in 198 lakes (55%) and positive in 161 (45%). The effect of annual DD was most negative in lakes with high largemouth bass densities, and, on average, the probability of recruitment was highest in large lakes with low largemouth bass densities. Conductivity and mean DD influenced neither recruitment nor the effect of annual DD. Walleye recruitment was most resilient to warming in lakes with few largemouth bass, suggesting that the effects of climate change depend on lake-specific food-web and habitat contexts.

Wisconsin↗

USGS2018

Influence of baffles on upstream passage of brook trout and brown trout in an experimental box culvert

There is much to learn about improving baffle designs to increase successful fish passage through culverts. A fish’s motivation to attempt entry into the culvert is essential. Upon entry, successful passage will largely depend on the physiological ability of the fish to navigate the entire culvert length. In this study, the motivation of brook trout ( Salvelinus fontinalis (Mitchill, 1814)) and brown trout ( Salmo trutta Linnaeus, 1758) to attempt ascent of an experimental flume, which mimics a roadway culvert left bare (smooth) or fitted with either spoiler or weir baffles, is assessed. Performance, measured as maximum distance of ascent within the flume, is also quantified. The bare flume was the most motivating for brook trout, and the weirs were most motivating for brown trout. As a rule, brown trout showed less motivation to stage attempts than brook trout, except within the weir baffle treatments. Performance was greatest in the weirs for smaller trout and in the spoiler baffles for larger trout. Our findings suggest that baffle form influences passage rates at road crossings in ways previously unknown and further stresses the importance of considering fish motivation and performance together when assessing the efficacy of baffle forms.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2020

How lipid content and temperature affect American shad (Alosa sapidissima) attempt rate and sprint swimming: Implications for overcoming migration barriers

How seasonal effects such as temperature increases and reduced lipid content affect the ability of anadromous fishes to traverse high-velocity barriers and sprint swimming is poorly understood. We evaluated American shad ( Alosa sapidissima ) swimming performance in a flume against high flow velocities (2.5–3.7 m·s −1 ) during the upstream migration period (April–May; temperatures 11.1–21.4 °C) to determine how their willingness to enter a velocity barrier (attempt rate) and their swimming endurance changed during migration. American shad did not make attempts at low temperatures, and attempt rate gradually increased throughout the migration as temperatures warmed. American shad displayed two distinct, nonsustained swimming modes (prolonged and sprint swimming), and endurance was different between sexes. At warmer temperatures, females swam at prolonged speeds more often and longer females displayed a lower endurance. Males primarily swam at sprint speeds and were affected by swimming speed, fork length, and lipid content. Our results indicate that American shad motivation and swimming endurance change over the course of the migration as conditions change, potentially limiting their ability to pass barriers.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2021

Influence of water temperature and biotic interactions on the distribution of westslope cutthroat trout (Oncorhynchus clarkii lewisi) in a population stronghold under climate change

Climate warming is expected to have substantial impacts on native trout across the Rocky Mountains, but there is little understanding of how these changes affect future distributions of co-occurring native fishes within population strongholds. We used mixed-effects logistic regression to investigate the role of abiotic (e.g., temperature) and biotic factors (bull trout presence, Salvelinus confluentus ) on distributions of westslope cutthroat trout ( Oncorhynchus clarkii lewisi ; WCT) in the North Fork Flathead River, USA and Canada. The probability of WCT presence increased with stream temperature and decreased with channel gradient and bull trout presence, yet the effect of bull trout was reduced with increasing pool densities. Combining this model with spatially explicit stream temperature projections, we predict a 29% increase in suitable habitat under high emissions through 2075, with gains at mid-elevation sites predicted to exceed bull trout thermal tolerances and high-elevation sites expected to become more thermally suitable for WCT. Our study illustrates the importance of considering abiotic and biotic drivers to assess species response to climate change, helping to guide local-scale climate adaptation and management.

Alberta, British Columbia, Montana↗

USGS2021

Tide gates form physical and ecological obstacles to river herring (Alosa spp.) spawning migrations

River herring ( Alosa spp.) are anadromous fish that enter North American Atlantic coastal rivers and lakes each spring to spawn. Anthropogenic structures such as dams and tide gates serve as physical obstacles that limit river herring access to spawning habitat. This study examined the physical and ecological components affecting herring passage through a tide gate by applying a time-to-event analysis framework to multiple movement behaviors derived from telemetry data. Herring had higher passage success early in the season (78%) than later (16%). Key behaviors that govern passage varied with diel period, tide, and flow direction through the gates. Furthermore, these behaviors shifted as the season progressed, consistent with the hypothesis that predator avoidance may be driving passage failure late in the spawning season.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2017

Geographic variation in winter adaptations of snowshoe hares (Lepus americanus)

Understanding adaptations of nonhibernating northern endotherms to cope with extreme cold is important because climate-induced changes in winter temperatures and snow cover are predicted to impact these species the most. We compared winter pelage characteristics and heat production of snowshoe hares ( Lepus americanus Erxleben, 1777) on the southern edge of their range, in Pennsylvania (USA), to a northern population, in the Yukon (Canada), to investigate how hares might respond to changing environmental conditions. We also investigated how hares in Pennsylvania altered movement rates and resting spot selection to cope with variable winter temperatures. Hares from Pennsylvania had shorter, less dense, and less white winter coats than their northern counterparts, suggesting lower coat insulation. Hares in the southern population had lower pelage temperatures, indicating that they produced less heat than those in the northern population. In addition, hares in Pennsylvania did not select for resting spots that offered thermal advantages, but selected locations offering visual obstruction from predators. Movement rates were associated with ambient temperature, with the smallest movements occurring at the lower and upper range of observed ambient temperatures. Our results indicate that snowshoe hares may be able to adapt to future climate conditions via changes in pelage characteristics, metabolism, and behavior.

Canadian Journal of Zoology↗

USGS2006

Genetic effects of ELISA-based segregation for control of bacterial kidney disease in Chinook salmon (Oncorhynchus tshawytscha)

We evaluated genetic variation in ability of Chinook salmon (Oncorhynchus tshawytscha) to resist two bacterial pathogens: Renibacterium salmoninarum, the agent of bacterial kidney disease (BKD), and Listonella anguillarum, an agent of vibriosis. After measuring R. salmoninarum antigen in 499 adults by enzyme-linked immunosorbent assay (ELISA), we mated each of 12 males with high or low antigen levels to two females with low to moderate levels and exposed subsets of their progeny to each pathogen separately. We found no correlation between R. salmoninarum antigen level in parents and survival of their progeny following pathogen exposure. We estimated high heritability for resistance to R. salmoninarum (survival h2 = 0.890 ?? 0.256 (mean ?? standard error)) independent of parental antigen level, but low heritability for resistance to L. anguillarum (h2 = 0.128 ?? 0.078). The genetic correlation between these survivals (rA = -0.204 ?? 0.309) was near zero. The genetic and phenotypic correlations between survival and antigen levels among surviving progeny exposed to R. salmoninarum were both negative (rA = -0.716 ?? 0.140; rP = -0.378 ?? 0.041), indicating that variation in antigen level is linked to survival. These results suggest that selective culling of female broodstock with high antigen titers, which is effective in controlling BKD in salmon hatcheries, will not affect resistance of their progeny. ?? 2006 NRC.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS1974

In vitro and in vivo efficacy of potentiated sulfonamide in control of furunculosis in salmonids

In vitro and in vivo efficacy of a potentiated sulffonamide, Ro5–0037, for inhibition of Aeromonas salmonicida , causative agent of fish furunculosis was determined. The components of the potentiated sulfonamide, sulfadimethoxine, and ormetoprim were tested alone and in combination. In vitro results showed that both sulfonamide-resistant and sensitive strains of A . salmonicida had greater sensitivity to Ro5–0037 than to either of its components. Also, sulfonamide-sensitive strains developed resistance to ormetoprim and sulfadimethoxine more rapidly than to Ro5–0037. Efficacy studies with small numbers of artificially infected trout revealed that Ro5–0037 effectively controlled furunculosis at 50 mg/kg of fish/day, one fourth the usual sulfonamide dosage level. Extensive field trials also showed the 50 mg/kg level of Ro5–0037 gave effective control of hatchery outbreaks of furunculosis. As found in the in vitro studies, all in vivo trials indicated the combination of ormetoprim and sulfadimethoxine was more efficient in inhibiting A . salmonicida than either component alone.

Journal of the Fisheries Research Board of Canada↗

USGS1990

Pattern of solute movement from snow into an upper Michigan stream

Precipitation, snowpack, snowmelt, and streamwater samples were collected in a small gauged watershed draining into Lake Superior during winter 1987–88 to assess the importance of snowmelt pattern and meltwater pathways in the occurrence of solute pulses in streamwater. The snowpack along the south shore of Lake Superior can contain 50% of annual precipitation inputs and 38% of annual ionic inputs including moderate levels of strong acids. Throughout winter, thawed surface soils and small but steady snowpack moisture release promoted movement of snowpack solutes to surface mineral soils. Preferential elution of K + , NH4 + , and H + from the snowpack occurred with the initial thaw. Most ions exhibited pulses in snowmelt. Transport of snowpack solutes to the stream during snowmelt was through near-surface soil macropores and overland flow. For those ions with concentrations higher in the snowpack than in the premelt streamwater, K + , NH 4 + , and H + , the earliest snowmelt pulses had the greatest influence on streamwater chemistry. Unlike other portions of the region with resistant bedrock, the widespread presence of alkaline glacial till provides excess stream acid neutralization capacity (ANC) to buffer acidic inputs. Peak winter streamwater ANC reduction was caused principally by spring melt dilution of base cations and associated alkalinity, constant high SO 4 2- levels, and an increase in NO 3 - . The maximum reduction in stream ANC was concurrent with overland flow. Relative to its snowmelt concentration, NO 3 - was highest in streamwater with some stream input likely the result of nitrification and N mineralization.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS1999

A method for nitrate collection for δ 15 N and δ 18 O analysis from waters with low nitrate concentrations

Recently, methods have been developed to analyze NO3- for δ15N and δ18O, improving our ability to identify NO3- sources and transformations. However, none of the existing methods are suited for waters with low NO3- concentrations (0.7-10 µM). We describe an improved method for collecting and recovering NO3- on exchange columns. To overcome the lengthy collection loading times imposed by the large sample volumes (7-70 L), the sample was prefiltered (0.45 µm) with a large surface area filter. Switching to AG2X anion resin and using a coarser mesh size (100-200) than previous methods also enhanced sample flow. Placement of a cation column in front of the anion column minimized clogging of the anion column by dissolved organic carbon (DOC) accumulation. This also served to minimize transfer of unwanted oxygen atoms from DOC to the 18O portion of the NO3- sample, thereby contaminating the sample and shifting δ18O. The cat-AG2X method is suited for on-site sample collection, making it possible to collect and recover NO3- from low ionic strength waters with modest DOC concentrations (80-800 µM), relieves the investigator of transporting large volumes of water back to the laboratory, and offers a means of sampling rain, snow, snowmelt, and stream samples from access-limited sites.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS1988

Seismic-reflection technique used to verify shallow rebound fracture zones in the Pierre Shale of South Dakota

Shallow seismic-reflection data are presented to demonstrate their usefulness for locating and showing the continuity and lateral extent of rebound fracture zones in the Pierre Shale. Rebound fracture zones, identified in boreholes near Hayes, South Dakota, have variable depth, thickness, and character, thus making questionable the correlation of these zones between holes. Thus, the subsequent determination of dip and of continuity of the zones is somewhat tenuous, especially if the fracture characteristics change significantly between holes. Once rebound fracture zones have been identified and located by borehole geotechnical and geologic data, seismic profiles can reveal the extent and geometry of fractures in these zones, thus providing valuable preconstruction information without the cost of additional drilling.-Authors

South Dakota↗

USGS1982

Breeding habitat selection and home range of radio-marked black ducks (Anas rubripes) in Maine

Telemetry techniques were used to monitor the movements and habitat use of 13 female and 7 male black ducks ( Anas rubripes ) in an inland breeding region of south central Maine in 1977–1980. Black ducks preferred persistent emergent, broad-leaved deciduous forested, and broad-leaved deciduous scrub–shrub wetlands over unconsolidated organic bottom, needle-leaved evergreen forested, and broad-leaved evergreen scrub–shrub ponds. Birds also made frequent use of small ephemeral pools and streams throughout the breeding period. Nests were located in several habitats ranging from wetland sites to upland areas 1.5 km from the most frequently used pond. Home range size averaged 119 ha for females and 231 ha for males and did not differ by reproductive stage. Three pairs used only a single pond during the incubation period. Home ranges were linear (linearity index = 2.8), averaging 1956 m long for females and 2755 m for males. Wetlands used most by hens during incubation recesses were not always those located closest to the nest. Radio-marked ducks that returned in subsequent breeding seasons demonstrated fidelity to the previously used home range. Pair bonds of marked birds lasted until day 19 or 20 of incubation for initial nesting attempts.

Maine↗

USGS1990

Home range and movements of postfledging American black ducks in eastern Maine

We monitored the movements of 97 female and 15 male juvenile American black ducks (Anas rubripes) in the vicinity of Moosehorn National Wildlife Refuge in eastern Maine and southwestern New Brunswick from September through mid- December, 1985-1987.. Movements were described by estimating home ranges and radial movements from the primary roost marsh. Overall home range sizes averaged 4987 ha (range 54 - 28 070 ha), and maximum distances moved from the roost averaged 9.9 km (range 0.9-42.8 km). Home ranges were linear (linearity index 2.8), and home range area and distance of movements from the roost both increased monthly. Ducks that used >15 % riverine habitat had larger home ranges and moved greater distances from the roost than ducks using <15% riverine wetlands. Movements did not differ between ducks usually alone and those usually in flocks. Juvenile black ducks moved in small flocks and were often alone (34% of 355 observations). Most ducks showed fidelity to one roost-marsh complex from September until migration in late November. Daily and seasonal movement patterns were similar to those predicted for refuging systems.

Canadian Journal of Zoology↗

USGS2002

Structure and flow-induced variability of the subtidal salinity field in northern San Francisco Bay

The structure of the salinity field in northern San Francisco Bay and how it is affected by freshwater flow are discussed. Two datasets are examined: the first is 23 years of daily salinity data taken by the U.S. Bureau of Reclamation along the axis of northern San Francisco Bay; the second is a set of salinity transects taken by the U.S. Geological Survey between 1988 and 1993. Central to this paper is a measure of salinity intrusion, X 2 : the distance from the Golden Gate Bridge to where the bottom salinity is 2 psu. Using X 2 to scale distance, the authors find that for most flow conditions, the mean salinity distribution of the estuary is nearly self-similar with a salinity gradient in the center 70% of the region between the Golden Gate and X 2 that is proportional to X −1 2 . Analysis of covariability of Q and X 2 showed a characteristic timescale of adjustment of the salinity field of approximately 2 weeks. The steady-state response deduced from the X 2 time series implies that X 2 is proportional to riverflow to the 1/7 power. This relation, which differs from the standard 1/3 power dependence that is derived theoretically assuming constant exchange coefficients, shows that the upstream salt flux associated with gravitational circulation is more sensitive to the longitudinal salinity gradient than theory supposes. This is attributed to the strengthening of stratification caused by the stronger longitudinal salinity gradient that accompanies larger river flows.

California↗

USGS2010

The tidally averaged momentum balance in a partially and periodically stratified estuary

Observations of turbulent stresses and mean velocities over an entire spring–neap cycle are used to evaluate the dynamics of tidally averaged flows in a partially stratified estuarine channel. In a depth-averaged sense, the net flow in this channel is up estuary due to interaction of tidal forcing with the geometry of the larger basin. The depth-variable tidally averaged flow has the form of an estuarine exchange flow (downstream at the surface, upstream at depth) and varies in response to the neap–spring transition. The weakening of the tidally averaged exchange during the spring tides appears to be a result of decreased stratification on the tidal time scale rather than changes in bed stress. The dynamics of the estuarine exchange flow are defined by a balance between the vertical divergence of the tidally averaged turbulent stress and the tidally averaged pressure gradient in the lower water column. In the upper water column, tidal stresses are important contributors, particularly during the neap tides. The usefulness of an effective eddy viscosity in the tidally averaged momentum equation is explored, and it is seen that the effective eddy viscosity on the subtidal time scale would need to be negative to close the momentum balance. This is due to the dominant contribution of tidally varying turbulent momentum fluxes, which have no specific relation to the subtidal circulation. Using a water column model, the validity of an effective eddy viscosity is explored; for periodically stratified water columns, a negative effective viscosity is required.

Journal of Physical Oceanography↗