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USGS2025

ShakeAlert®—Communication, education, outreach and technical engagement strategic vision

Executive Summary In 2006, the U.S. Geological Survey (USGS) began directly supporting ShakeAlert ® research and in 2012 the ShakeAlert demonstration system began testing ( Given and others, 2018 ). The ShakeAlert earthquake early warning (EEW) system is a partnership between the U.S. Geological Survey (USGS) and the three West Coast States (Washington, Oregon, and California) served by the ShakeAlert System, which is part of the larger Advanced National Seismic System (ANSS). With more than 143 million people exposed to potentially damaging shaking in the United States ( Jaiswal and others, 2015 ), earthquakes are a national hazard. Most of our Nation’s earthquake risk is concentrated in the highly populated areas on the active plate tectonic boundaries on the West Coast of the conterminous United States. ShakeAlert is the first public alert system in the United States to provide rapid mass notification of earthquake detection, potentially offering seconds of warning before strong shaking arrives. A few seconds may not seem like much time, but the information in ShakeAlert Messages can be used to trigger automated actions that can prevent injury or death, reduce immediate damage, and speed recovery from earthquakes. The information product issued by the ShakeAlert system is called a ShakeAlert Message and is one of the information products and tools of the ANSS. The ShakeAlert System includes the USGS component, plus the pathways by which ShakeAlert-powered products and (or) services are delivered to end users. Alerts can be delivered to cell phones or be used to trigger automated systems to protect equipment, facilities, and infrastructure, such as slowing or stopping a train. ShakeAlert-powered automated actions can include fire house doors that can be opened to prevent jamming, heavy equipment (for example, trains, elevators, and cranes) that can be automatically stopped or parked in safe positions, and pipeline valves that can be closed to prevent surges and spills. A few seconds of warning also may be sufficient for people to take protective actions, such as drop, cover, and hold on or modified protective actions for a broad range of populations. Advance training may increase the benefit of a speedy response to an alert. Outreach and education about EEW may raise awareness of the overall earthquake threat and how people can best react when they receive an alert or feel shaking. ShakeAlert communication, education, outreach, and technical engagement (CEO&TE) efforts are highly collaborative and essential for the success of the ShakeAlert System. This strategic vision informs how the vast ShakeAlert CEO&TE Community operates and works together. The CEO&TE Community delineates a strategic framework that is intended to set the path for a long-term, sustainable approach to CEO&TE through three focus areas and five priorities. Focus Areas Technical engagement.— The objective of this focus area is to expand and broaden ShakeAlert technical engagement and implementation. External engagement.— This focus area targets engagement in long-term communication, education, and outreach planning, implementation, and evaluation. Internal engagement.— The purpose of this focus area is to build and sustain a robust infrastructure to optimize collaboration, information sharing, and project planning among the community of stakeholders charged with implementing ShakeAlert CEO&TE. Priorities The enumeration of the five priorities listed below does not suggest priority ranking. Public safety, preparedness, and resilience; Technical implementation and engagement; Consistent messaging and communication; Integration with other Federal and State earthquake hazards products; and Educational resources development and dissemination. This strategic vision is a tangible outcome of collaboration among many stakeholders beginning in July 2016. Since then, the work of the ShakeAlert CEO&TE Community has grown into an international effort. The USGS has developed, tested, and implemented a broad spectrum of communication, education, and outreach tools and resources—all of which recognize that seconds matter when it comes to safety and mitigating harm from earthquake hazards. The CEO&TE social science research effort has provided invaluable insights into the ShakeAlert System’s human interface. USGS-licensed technical partners develop, test, and implement real-world applications using ShakeAlert Messages. The success of ShakeAlert CEO&TE efforts is predicated on robust collaboration across numerous agencies, organizations, and groups. As such, this strategic vision outlines a “partnership model” that delineates roles and responsibilities to ensure alignment with focus areas and priorities. The partnership model includes the CEO&TE lead agency (USGS); its principal partners (State agencies and university partners); its implementation partners (for example, technical partners who build systems to deliver ShakeAlert-powered products and (or) services [focus area one]), earthquake education partners who work to increase public preparedness for seismic events (focus area two); and other organizations that work together to enhance the adoption and effectiveness of the ShakeAlert System. These partners collaborate and convene through a variety of working groups and forums, which are also described in this strategic vision and align with focus area three (internal engagement). The CEO&TE Community collaboratively developed its operating principles and a consensus-based, decision-making strategic framework to guide its collective work. Performance metrics are used to continually measure success. Ultimately, the USGS and ShakeAlert CEO&TE Community are advancing the ShakeAlert System that as of the publication of this strategic vision to “provide earthquake early warning for all” serves more than 50 million people.

Circular↗
USGS2025

Modeling interconnected minerals markets with multicommodity supply curves: Examining the copper-cobalt-nickel system

Demand for many of the metals used in the energy transition is expected to grow rapidly. Many of these are by-products, often considered critical because their production responds weakly to prices and is instead tied to the economics of the host mineral. We present a model of prices and production for jointly produced commodities that accounts for interconnectivity between host and by-product markets at the mine level. We demonstrate this method using the copper–cobalt–nickel system, in which approximately 99% of cobalt is a by-product of copper or nickel mining. Our results show that the model more accurately captures the economic benefits of diversified mine outputs than previous approaches. Furthermore, changes in demand drivers for any two commodities produce non-linear effects on production and price. We challenge the prior best-practice assumption that cobalt cannot impact the copper or nickel markets. Recognizing the importance of both copper and cobalt for future electrification, we emphasize that incentivizing the copper industry to reduce cobalt supply risks could inadvertently undermine copper supply.

Nature Communications↗
USGS2025

Toward a new framework to evaluate process-based model configurations and quantify data worth prior to calibration

Model criticism, discrimination, and selection methods often rely on calibrated model outputs. Because calibration can be computationally expensive, model criticism can first be undertaken by assessing model outputs obtained from limited prior parameter ensembles. However, such prior-based methods are often heuristic and do not formalize the notion of balancing model consistency with data and model complexity (i.e., model adequacy). We present a new framework to discriminate among candidate models prior to calibration that formalizes prior-to-calibration model adequacy into a metric to implicitly balance prior model output data coverage with model complexity represented by prior output (co)variance. The prior model adequacy metric “Mahalanobis distance deviation” quantifies the deviation of (a) the set of squared Mahalanobis distances of data from a prior model output distribution from (b) the set of squared Mahalanobis distances of data from their own distribution. A new data worth metric “discernment value” is also presented which quantifies the value of data for screening less-adequate models prior to calibration. Discernment value is calculated from the change in variance of a weighted average of prior model outputs from all candidate models due to less-adequate model outputs receiving lower weight. The framework is demonstrated using a one-dimensional groundwater flow model with eight possible configurations. A synthetic data network is used to test the framework. Results show the framework identifies the candidate models most similar to the true model used to create the synthetic data. Discernment values show variation in the value of different data types and locations for screening less-adequate models.

Water Resources Research↗
USGS2024

Parameter ESTimation with the Gauss–Levenberg–Marquardt algorithm: An intuitive guide

In this paper, we review the derivation of the Gauss–Levenberg–Marquardt (GLM) algorithm and its extension to ensemble parameter estimation. We explore the use of graphical methods to provide insights into how the algorithm works in practice and discuss the implications of both algorithm tuning parameters and objective function construction in performance. Some insights include understanding the control of both parameter trajectory and step size for GLM as a function of tuning parameters. Furthermore, for the iterative Ensemble Smoother (iES), we discuss the importance of noise on observations and show how iES can cope with non-unique outcomes based on objective function construction. These insights are valuable for modelers using PEST, PEST++, or similar parameter estimation tools.

Groundwater↗
USGS2024

Federal lands greenhouse gas emissions and sequestration in the United States: Estimates for 2005–22

In 2016, the Secretary of the U.S. Department of the Interior requested that the U.S. Geological Survey (USGS) produce a publicly available and annually updated database of estimated greenhouse gas emissions associated with the extraction and use of fossil fuels from Federal lands. The first report in this series included emissions estimates from 2005 to 2014 and were reported for 29 States and two offshore areas. Native American and Tribal lands were not included in that analysis. This report recalculates those previous years (2005–14) with updated data and methods and extends the estimates to 2022. Nationwide emissions from fossil fuels produced on Federal lands in 2022 were 1,081.2 million metric tons of carbon dioxide equivalent (MMT CO 2 Eq.) for CO 2 , 33.4 MMT CO 2 Eq. for methane (CH 4 ), and 4.3 MMT CO 2 Eq. for nitrous oxide (N 2 O). Compared to 2005, the 2022 totals represent decreases in emissions for all three greenhouse gases (by 17 percent for CO 2 , 37 percent for CH 4 , and 30 percent for N 2 O). Emissions from fossil fuels produced on Federal lands represent, on average, 21.8 percent of U.S. emissions for CO 2 , 6.1 percent for CH 4 , and 1.3 percent for N 2 O over the 18 years included in this estimate. The trends and relative magnitudes of the greenhouse gas emissions estimated are roughly parallel to the Federal lands fossil fuel production volumes. In 2021, Federal lands of the conterminous United States stored 70,424 MMT CO 2 Eq. in terrestrial ecosystems. Soils stored most of the terrestrial ecosystem carbon (66 percent), followed by live vegetation (25 percent), deadwood (5 percent), and litter (4 percent). Carbon sequestration on Federal lands was highly variable over time, owing primarily to interannual variability in climate and weather, and variability in land use and land cover (LULC) change and disturbances, among these are wildfires and logging. Between 2005 and 2021, Federal lands sequestered an average of 83 MMT CO 2 Eq./yr. By subtracting the cumulative effects of LULC and disturbance-related CO 2 losses to the atmosphere from the total, we estimate that ecosystems at the national level sequestered CO 2 at an annual mean rate of 17 MMT CO 2 Eq./yr in a term called the net ecosystem exchange (NEE). This annual NEE sequestration value represents about 1.4 percent of average fossil fuel emissions over the same period. The USGS estimates presented in this report represent an accounting for the emissions resulting from fossil fuel extraction on Federal lands and the end-use combustion of those fuels, as well as for the sequestration of carbon in terrestrial ecosystems on Federal lands. A combined net CO 2 emissions estimate, which is the difference between the emitted and sequestered CO 2 from both the fossil fuel and ecosystems estimates, provides context for evaluating the greenhouse gas contributions of activities on these lands. The estimates included in this report can provide context for future energy decisions, as well as a basis to track change in the future.

Scientific Investigations Report↗
USGS2026

A practical decision tool for marine bird mortality assessments

Given the rise in anthropogenic, environmental, and disease events contributing to marine bird mortality, there is a critical need to improve the rigor of mortality assessments. Deficits in data collection and mortality estimation can hinder a manager’s ability to document the scale of events and assess population level impacts. Therefore, to inform decisions required during activities, such as conservation status assessments or harvest management, organizations may choose to incorporate mortality assessments into response plans. Resources, capacity, and assets to assess mortality vary across jurisdictions (federal, state, Indigenous, local, etc.), and clear guidance to support mortality assessments is often unavailable or not clearly addressed. Here, we present a decision support tool to help managers identify and evaluate survey options to assess bird mortality in a diverse array of scenarios. The objective of the decision tool is to improve data collection and availability, which will increase the ability to estimate mortality robustly, given situation-specific attributes and constraints. This decision tool is designed to guide the response when a mortality event is initially encountered and offers suggestions for assessment and reporting procedures in the absence of other guidance or to complement existing protocols. The decision tool is also meant to inform decision making for response determination and resource allocation. The tool facilitates examination of options for further assessment and monitoring, which users determine by examining questions pertaining to species prioritization, determination of mortality minimum spatial extent, and the potential magnitude of impacts on affected species. Finally, identification of appropriate survey methods that address imperfect detection when a complete census is not possible are determined by exploring location, spatial and temporal extent, and the type of species affected. Ultimately, this decision tool aims to facilitate and improve the standardization of mortality assessments, equipping managers with a practical resource to navigate the decision-making process for marine bird mortality estimation.

Ornithological Applications↗
USGS2024

The new self-anchored suspension (SAS) San Francisco Bay Bridge- Its response to a small earthquake

This paper presents a summary of previously published work (Celebi 2023) related to the new Self-Anchored Suspension (SAS) bridge that went into service within the last decade as a replacement for the older truss bridge spanning between Yerba Buena Island and Oakland, California, within the San Francisco Bay Area. During the October 19, 1989 M6.9 Loma Prieta earthquake, which occurred ~100 km south of the Bay Bridge, a section of the upper deck of the truss bridge fell onto the lower deck – thus closing this important lifeline between San Francisco and Oakland. The SAS is unique, self-anchored, and suspended by a single tower that is pivotal in trafficking the cable and hanger system to support the decks. The SAS bridge is extensively instrumented by the California Geological Survey’s Strong Motion Instrumentation Program (CSMIP). There are approximately 85 channels of accelerometers in the seismic monitoring system that recorded the October 14, 2019 Mw4.6 Pleasant Hill earthquake. The data allow a complex but identifiable coupled response of the deck, tower, and cable system. Both acceleration and displacement time-history data are used to extract significant frequencies using system identification methods, including spectral analyses. Results are compared to those from finite-element-model (FEM) analyses carried out during the design and analysis process of the bridge in 2002 (Nader et al. 2002). There are differences between FEM analyses results and those from the low amplitude shaking caused by a seismic event. An apparent frequency (period) of the SAS bridge is assessed (approximately 5.2 seconds). In a plot of deck length versus period, there is an almost linear relationship with periods of other regular suspension bridges, such as the Golden Gate Bridge and the Carquinez Bridge, both in the San Francisco Bay.

California↗
USGS2025

Earthquake recurrence estimates for northern Caribbean faults from combinatorial optimization

We use combinatorial optimization to find the optimal spatial distribution of random samples of earthquakes (≥6.5) that minimize the misfit in target slip rates for all faults in the northeast Caribbean, and we derive magnitude-frequency relationships with uncertainties for these faults. Slip rates for many faults are derived from GPS block models, not direct measurements, because of their underwater locations. Predicted recurrence rates for eastern Hispaniola and Puerto Rico Trench faults are 220-450 yr for M7 and 3-5 kyr for M8, with maximum feasible magnitude of M8.2. The most frequent earthquakes with magnitudes ≥7.0 are predicted on the large upper plate strike-slip faults, Enriquillo (EF) and Septentrional Fault, commensurate with the historical record. Calais et al. (2023) suggested that shortening in western Hispaniola is accommodated on the offshore Jérémie and onshore Malpasse faults north and south of EF, instead of on terrestrial faults in western Hispaniola and EF. Because of our system-modeling approach, such a configuration predicts less frequent earthquakes on EF and on western Hispaniola and Muertos convergent zones. Recurrence times of a few 100s yr for M6.7 earthquakes is predicted on the submerged faults in Mona Passage, and infrequent M>7 earthquakes are predicted on the Virgin Islands faults.

Lesser Antilles↗
USGS2025

USGS—An Unparalleled Scientific Asset

The U.S. Geological Survey (USGS) delivers information critical to powering our economy, managing our natural resources, and keeping Americans safe and healthy. 1 Mapping the Nation $21B Geologic maps save users an estimated 15% in annual costs: a value of between $14B and $21B. $25.6B in annual value to users of imagery from Landsat satellites, which were codeveloped by NASA and the USGS and operated through their lifespans by the USGS. $13.5B in annual benefits is generated by the USGS's 3D Elevation Program. Securing America’s Energy Independence 44% USGS-identified undiscovered geothermal energy is equal to 44% of current U.S. electricity generation. 29.4B barrels of oil and 391.6 trillion cubic feet of gas in recoverable resources are available on U.S. public lands based on USGS assessments. Protecting Americans’ Health and Safety $424B in recent wildland fire damages highlight the need for USGS fire science, which supports efforts to protect communities and reduce risk. USGS earthquake, volcano, landslide, and coastal hazard monitoring and information save lives and minimize costs; for example, $2.8M can be saved because of USGS enhanced information about a Mauna Loa eruption. $4.5B is the estimated cost of annual flooding. Through a network of over 11,885 streamgages, the USGS supports public safety and enables forecasts, early warning systems, and management actions that protect lives and property. Supporting National Security $3.1B The USGS identified a $3.1B risk to the American economy if China restricts gallium imports. This is one example underscoring the importance of the USGS mapping critical minerals, investigating supply chains, and producing the Nation’s critical minerals list. Enhancing Our Lands and Waters $21B in estimated annual costs results from invasive species. The USGS’s invasive species research informs approaches used to reduce their effects on agriculture, water infrastructure, disease transmission, fisheries, and outdoor recreation. USGS innovations support early warnings for harmful algal blooms—over $2M in yearly benefits are provided to Kansas alone. $45B USGS science informs the management of big game (such as deer and elk). The big-game hunting industry contributes $45B to the U.S. economy. Fostering American Prosperity $4.1T Mineral commodities are necessary for the $4.1T in value added to the GDP by major industries that consume processed mineral materials and employ 1 million workers. Because of this, USGS data on mineral supply, demand, and trade are highly valued. 45,000 metric tons Rare earths power the growing technology economy, including cell phones, electric vehicles, and medical devices. For over 70 years, USGS work has supported the discovery of rare earth resources in California’s Mountain Pass area, which produced 45,000 metric tons of rare earth concentrates in 2024—over 11% of the global supply. Guarding American Food Security $70.2B USGS science informs early warning systems and management strategies to mitigate disease outbreaks in agriculture—critical research on highly pathogenic avian influenza, for example, helps safeguard the $70B value in poultry and egg production. $11.8B USGS groundwater tools are vital for agriculture; for example, in the Mississippi Alluvial Plain, 65% of farming relies on groundwater to support its $11.8B annual industry. 1 Values throughout are given in billions (B), millions (M), and trillions (T) of U.S. dollars. GDP is “Gross Domestic Product.” Percentages are shown as %.

General Information Product↗
USGS2025

RioM-1: A new calcite reference material for U-Pb LA-ICP-MS geochronology

Determining absolute ages of carbonate diagenesis, faulting, fossil formation, speleothem growth, carbonate-hosted hydrocarbon deposits, vein mineralisation and hydrothermal alteration has become increasingly accessible through LA-ICP-MS U-Pb dating of calcite, complementing traditional isotope dilution methods still applicable to certain materials (e.g., speleothems via micro-drilling). However, well-calibrated reference materials for LA-ICP-MS calcite geochronology remain scarce. Here, we characterise the Rio Maior calcite, designated ‘RioM-1’, as a potential reference material for U-Pb dating by LA-ICP-MS. Fragments (0.1 to 1 cm 3 ) from a single scalenohedral crystal were analysed by ID-TIMS (U-Pb), LA-ICP-MS (U-Pb and 87 Sr/ 86 Sr), and SIMS (O isotopes). RioM-1 displays high U mass fraction and low, though variable, proportions of common Pb. Combined ID-TIMS analyses from two independent laboratories yielded a Tera-Wasserburg lower intercept date of 63.93 ± 0.11 Ma (2 s , MSWD = 1.3, n = 16). LA-ICP-MS U-Pb data from three independent laboratories are concordant with the TIMS age, producing a pooled date of 64.10 ± 0.12/1.2 Ma (2 s , MSWD = 7.7, n = 708) and an initial 207 Pb/ 206 Pb ratio of 0.85 ± 0.01. Other calcite reference materials, when normalised to RioM-1, yielded dates within uncertainty of their published values. SIMS measurements returned a mean 18 O/ 16 O of 0.002044450 ± 181 (1 s ) and δ 18 O SMOW of 19.57 ± 0.92‰ (1 s ), while LA-ICP-MS strontium isotope measurement yielded a mean 87 Sr/ 86 Sr of 0.708177 ± 9 (2 s ).

Geostandards and Geoanalytical Research↗
USGS2026

Black rails in Baja California

Summarizing records from 1905 to 2025, we document the presence and distribution of the California black rail ( Laterallus jamaicensis coturniculus ) in northwestern México, particularly Baja California and the Colorado River Delta. This subspecies has a restricted distribution in the western U.S. and northwestern México. We found few records over the past century: sparse detections in the early 1900s and an increase in reported records after 2000. Over 120 years, we compiled 35 documented records of California black rail occurrence in Baja California with a minimum reported count of 56 rails. Our call-broadcast survey methods reconfirmed previously occupied sites and documented the species at a previously unreported site. Surveys in the Baja California portion of the Colorado River Delta yielded 20 detections across nine survey events between 2000 and 2022. In April 2003, standardized surveys detected 12 California black rails: 7 in Bahía de San Quintín, 3 in Arroyo San Telmo, and 2 in Arroyo El Rosario. Our recent survey work (2022–2025) recorded maximum monthly counts of 31 detections at Bahía de San Quintín and 15 detections at Estero de Punta Banda, the latter representing a previously undocumented location for the subspecies. These surveys also yielded the first photographic and acoustic documentation of California black rail in México. The contribution of spatial and temporal data provided by citizen science platforms increased our understanding of the subspecies’ distribution. Enforceable protection of this subspecies’ habitat is needed to safeguard its persistence.

Baja California↗
USGS2025

Zircon as a pathfinder to REE mineralization

Carbonatites and alkaline silicate rocks are major primary sources of the rare earth elements (REE) and other critical metals, such as Nb. Despite the economic significance of these rocks, their formation and the processes of REE enrichment are poorly understood. Here, statistical analysis of a global dataset demonstrates that zircon geochemistry is a powerful recorder of REE metallogenesis and a potential pathfinder for REE deposits. Zircons from REE and Nb fertile intrusions lack Eu anomalies and have elevated Gd/Yb and Th/Yb, indicating they crystallised from magmas that originated from deep, oxidised and enriched mantle sources. Complexes with Nb enrichment have low U/Nb, reflecting an enriched mantle source, whereas high U/Nb in REE-only fertile intrusions suggest a subduction-metasomatised mantle source. Machine learning models demonstrate high accuracy in classifying zircon from barren and fertile deposits. Classification of detrital zircons shows that REE-enriched deposits correlate with supercontinent assembly, whereas Nb fertile complexes are associated with supercontinent breakup. This approach offers a new, mineral to global scale, petrologic and exploration tool that enhances understanding of REE metallogenesis.

Geochemical Perspectives Letters↗
USGS2025

Mapping eelgrass (Zostera marina) cover and biomass at Izembek Lagoon, Alaska, using in-situ field data and Sentinel-2 satellite imagery

The U.S. Geological Survey and the U.S. Fish and Wildlife Service have developed a three-tiered strategy for monitoring eelgrass ( Zostera marina ) beds at Izembek Lagoon, Alaska, that targets different spatial and temporal scales. The broadest-scale monitoring (tier-1) uses satellite imagery about every 5 years to delineate the spatial extent of eelgrass beds throughout the lagoon. This report describes the most recent (mid-2020s) tier-1 eelgrass monitoring at Izembek Lagoon. The monitoring effort began by canvasing all satellite imagery collected during summer, under clear daytime skies and at low-tide, since the last tier-1 effort in 2006. Two eelgrass maps of Izembek Lagoon were generated by first creating maps of spectrally unique classes from two Sentinel-2 satellite images collected on July 1, 2016, and August 14, 2020, then attributing those spectral classes with information about eelgrass conditions based on field data. Specifically, maps depicting various eelgrass metrics, such as percentage of cover and modeled biomass, were generated using summaries of the ground data that spatially intersected each spectral class. Comparisons of the 2016 and 2020 Sentinel-2 maps showing eelgrass distributional extent, as well as a 2006 Landsat map, indicated that areas where eelgrass presence may have declined during 2006–20 were most prevalent in the central part of Izembek Lagoon. More recently, during 2016-20, areas of possible biomass decline were more prevalent in the southern part of the lagoon. Monitoring eelgrass conditions at Izembek Lagoon with satellite imagery and concurrent ground data allows conditions to be compared over time, but the influences of tide levels, growing season phenology, and spatiotemporal co-registration accuracy should be considered when designing and interpreting change detection analyses.

Alaska↗
USGS2024

Case definitions for wildlife diseases

Welcome to the first manual of “Case Definitions for Wildlife Diseases,” a “living” electronic publication. The plan is to add and update this manual’s case definitions periodically as warranted; thus, this manual will never be completed, and readers should download the latest versions of specific chapters (that is, definitions) when available. Constructive suggestions from readers are welcome and will help guide adjustments as this project progresses. The purpose of this manual is to provide case definitions for selected diseases of importance to wildlife in Canada and the United States. Case definitions provide standard sets of criteria for classifying the degree of certainty of a particular diagnosis and help improve surveillance data quality and comparability. Better data and standardization allow for improved data sharing, which increases geographic and species surveillance coverage and permits more robust analyses. The definitions included in this manual have been developed by veterinary pathologists, epidemiologists, and wildlife biologists primarily from the U.S. Geological Survey National Wildlife Health Center (NWHC) and Canadian Wildlife Health Cooperative (CWHC). Pathologists from each organization reviewed and finalized the definitions. Each case definition has been peer reviewed by two scientific experts before publication. This manual begins with the case definition template. This generic template includes four sections: “Individual, Place, and Time Criteria for Diagnosis and Testing,” “Field Criteria for Diagnosis,” “Laboratory Criteria for Diagnosis,” and “Epidemiological Linkage Criteria for Diagnosis” and can be used to guide development of new case definitions. Information in each section is then combined to provide an overall case classification. Disease diagnoses are classified as “Confirmed,” “Presumptive,” or “Suspected;” and evidence of a pathogen or toxin is classified as “Exposed” or “Present/Detected.” Each subsequent chapter is then a case definition for a specific disease of wildlife, and infectious and non-infectious diseases are included.

Techniques and Methods↗
USGS2026

Site response models based on geometric parameters for southern California sedimentary basins

Site response in sedimentary basins is influenced by complex three-dimensional (3D) features, including trapping of seismic waves, focusing of seismic energy and basin resonance. Current ground motion models (GMMs) incorporate basin effects using one-dimensional parameters like V S30 and shear wave velocity isosurface depths, which are limited in capturing lateral and 3D effects. To address these limitations, we develop seismic site response models based on novel parameters that represent multi-dimensional properties of the Los Angeles Basin (LAB) geometry and shear wave velocity. We define a basin shape for the LAB using depth to subsurface geologic interfaces associated with the oldest sedimentary deposits (depth to a particular shear wave velocity horizon, i.e., 1.5 km/s - z 1.5 ) and the depth to the crystalline basement ( z cb ) which are determined using geologic cross sections and community seismic velocity model profiles. We explore a suite of geometric descriptors computed for the LAB and southern California, from which three parameters with the greatest predictive potential are selected and evaluated using empirical ground motion residual analyses in combination with the Boore et al. GMM. The results demonstrate that the zonal heterogeneity index ( ), standard deviation of the absolute difference between z 1.5 and z cb ( ) and standard deviation of z cb ( ) each provide a reduction in site-to-site variability ( ϕ S2S ) of empirical GMMs. The reduction in ϕ S2S is period-dependent, with average decreases of 3%, 26% and 6% for , , and , respectively. Although these reductions are modest from an engineering application perspective, they are statistically significant, underscoring the inherent difficulty in fully characterising complex basin effects. Collectively, these findings indicate that the inclusion of basin-specific geometric parameters yields measurable, albeit incremental, improvements in site response prediction and establishes a framework for the progressive refinement of seismic hazard characterisation within sedimentary basins.

California↗
USGS2026

Modeled groundwater and surface-water interactions surrounding Mobile Bay, Alabama, 2008–15

The U.S. Geological Survey, in cooperation with the Gulf Coast Ecosystem Restoration Council, has used MODFLOW 6 to develop a groundwater-flow model to simulate groundwater and surface-water interactions in the Mobile Bay, Alabama, area. The model results indicated that, on average, groundwater discharge near the coastline is equal to 2.5 percent of the surface water that flows into the bay. The model was also used to determine how changes in recharge, sea level, and groundwater pumping affect groundwater levels and discharge rates. The results indicate that more groundwater discharge occurred in the winter and spring when recharge was higher, sea level was lower, and groundwater pumping was lower than during the summer and fall. Additionally, the amount of emergent groundwater was closely related to sea level; when sea level was higher, there was more area with emergent groundwater. Furthermore, the depth of nonemergent groundwater was related to trends in recharge and pumping. During periods of increased recharge and reduced pumping, a significant portion of the model area exhibited a depth to the water table of less than 1 meter below the land surface. Conversely, during periods of decreased recharge and heightened pumping, much of the model area showed a depth to the water table ranging from 1 to 5 meters.

Alabama, Mississippi↗
USGS2025

Earthquake stress-drop values delineate spatial variations in maximum shear stress in the Japanese forearc lithosphere

Earthquake stress drop (Δσ) may increase with depth and stress in the brittle lithosphere. However, the range of uncertainty in Δσ and the lack of constraints on absolute stress make it difficult to establish whether they are correlated. Here, we investigate Δσ dependence on depth and maximum shear stress ( τ max ) based on ~11 years of seismicity in the northeastern Japanese forearc following the 2011 Tohoku-Oki megathrust earthquake. We interpret Δσ estimates computed using both individual spectra and spectral-ratio methods and find that Δσ exhibits a clear depth dependence within the seismically active upper ~60 km of the forearc lithosphere ( ~ 0.8 MPa per 10 km). We further compare Δσ values with quantitative τ max estimates from finite-element models of force balance. We find that median Δσ values increase with τ max in the brittle forearc lithosphere and that earthquake stress release is proportional to τ max . The dependence of Δσ on τ max explains the apparent depth dependence of Δσ and suggests that average Δσ values provide a relative measure of the stress at failure. In the northeastern Japanese forearc, Δσ values remained roughly constant in the decade following the Tohoku-Oki earthquake, suggesting negligible changes in failure stress in the forearc since the mainshock.

Communications Earth and Environment↗