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At least 1,531 records · Page 85Linked to original sources
USGS2005

Eradication of invasive Tamarix ramosissima along a desert stream increases native fish density

Spring ecosystems of the western United States have high conservation value, particularly because of the highly endemic, and often endangered, fauna that they support. Refuges now protect these habitats from many of the human impacts that once threatened them, but invasive species often persist. Invasive saltcedar is ubiquitous along streams, rivers, and spring ecosystems of the western United States, yet the impact of saltcedar invasion on these ecosystems, or ecosystem response to its removal, have rarely been quantified. Along Jackrabbit Spring, a springbrook in Nevada that supports populations of two endangered fish (Ash Meadows pupfish and Ash Meadows speckled dace) as well as several exotic aquatic consumers, we quantified the response of aquatic consumers to largescale saltcedar removal and identified the mechanism underlying consumer response to the removal. Clearing saltcedar from the riparian zone increased densities of native pupfish and exotic screw snails, but decreased the density of exotic crayfish. Positive effects of saltcedar removal on pupfish and snails occurred because saltcedar heavily shades the stream, greatly reducing the availability of algae for herbivores. This was confirmed by analyses of potential organic matter sources and consumer 13C: pupfish and snails, along with native dace and exotic mosquitofish, relied heavily on algae-derived carbon and not saltcedar-derived carbon. By contrast, crayfish ??13C values mirrored algae ??13C during summer, but in winter indicated reliance on allochthonous saltcedar litter that dominated organic inputs in saltcedar reaches and on algae-derived carbon where saltcedar was absent. The seasonal use of saltcedar by crayfish likely explains its negative response to saltcedar removal. Clearing saltcedar effectively restored the springbrook of Jackrabbit Spring to the conditions characteristic of native vegetation sites. Given the high conservation value of spring ecosystems and the potential conservation benefits of saltcedar removal that this research highlights, eradicating saltcedar from spring ecosystems of the western United States should clearly be a management priority. ?? 2005 by the Ecological Society of America.

Ecological Applications↗
USGS1998

Environmental setting of the San Joaquin-Tulare basins, California

The National Water-Quality Assessment Program for the San Joaquin-Tulare Basins began in 1991 to study the effects of natural and anthropogenic influences on the quality of ground water, surface water, biology, and ecology. The San Joaquin-Tulare Basins study unit, which covers approximately 31,200 square miles in central California, is made up of the San Joaquin Valley, the eastern slope of the Coast Ranges to the west, and the western slope of the Sierra Nevada to the east. The sediments of the San Joaquin Valley can be divided into alluvial fans and basin deposits. The San Joaquin River receives water from tributaries draining the Sierra Nevada and Coast Ranges, and except for streams discharging directly to the Sacramento-San Joaquin Delta, is the only surface- water outlet from the study unit. The surface-water hydrology of the San Joaquin-Tulare Basins study unit has been significantly modified by development of water resources. Almost every major river entering the valley from the Sierra Nevada has one or more reservoirs. Almost every tributary and drainage into the San Joaquin River has been altered by a network of canals, drains, and wasteways. The Sierra Nevada is predominantly forested, and the Coast Ranges and the foothills of the Sierra Nevada are predominately rangeland. The San Joaquin Valley is dominated by agriculture, which utilized approximately 14.7 million acre-feet of water and 597 million pounds active ingredient of nitrogen and phosphorus fertilizers in 1990, and 88 million pounds active ingredient of pesticides in 1991. In addition, the livestock industry contributed 318 million pounds active ingredient of nitrogen and phosphorus from manure in 1987. This report provides the background information to assess the influence of these and other factors on water quality and to provide the foundation for the design and interpretation of all spatial data. These characterizations provide a basis for comparing the influences of human activities among basins and specific land use settings, as well as within and among study units at the national level.

California↗
USGS2022

Paralytic shellfish toxins associated with Arctic Tern mortalities in Alaska

Harmful algal blooms produce biotoxins that can injure or kill fish, wildlife, and humans. These blooms occur naturally but have intensified in many locations globally due to recent climatic changes, including ocean warming. Such changes are especially pronounced in northern regions, where the effects of paralytic shellfish toxins (PSTs) on marine wildlife are of growing concern. In Alaska, seabird mortality events have increased in frequency, magnitude, and duration since 2015 alongside anomalously high ocean temperatures. Although starvation has been implicated as the apparent cause of death in many of these die-offs, saxitoxin (STX) and other PSTs have been identified as possible contributing factors. Here, we describe a mortality event at a nesting colony of Arctic Terns ( Sterna paradisaea ) near Juneau, Alaska in 2019 and report elevated concentrations of PSTs in bird, forage fish, and mussel samples. Concentrations of STX and other PSTs in tern tissues (2.5–51.2 µg 100g −1 STX-equivalents [STX-eq]) were of similar magnitude to those reported from other PST-induced bird die-offs. We documented high PST concentrations in blue mussels (>11,000 µg 100g −1 STX-eq; Mytilus edulis spp.) collected from nearby beaches, as well as in forage fish (up to 494 µg 100g −1 STX-eq) retrieved from Arctic Tern nests, thereby providing direct evidence of PST exposure via the terns’ prey. At maximum concentrations measured in this study, a single 5 g Pacific Sand Lance ( Ammodytes personatus ) could exceed the median lethal STX dose (LD 50 ) currently estimated for birds, offering strong support for PSTs as a likely source of tern mortality. In addition to describing this localized bird mortality event, we used existing energetics data from adult and nestling Arctic Terns to calculate estimated cumulative daily PST exposure based on ecologically relevant concentrations in forage fish. Our estimates revealed potentially lethal levels of PST exposure even at relatively low (≤30 ug 100g −1 STX-eq) toxin concentrations in prey. These findings suggest that PSTs present a significant hazard to Arctic Terns and other northern seabirds and should be included in future investigations of avian mortality events as well as assessments of population health.

Alaska↗
USGS2003

Explosive-residue compounds resulting from snow avalanche control in the Wasatch Mountains of Utah

A snow avalanche is a powerful force of nature that can play a significant role in developing mountain landscapes (Perla and Martinelli, 1975). More importantly, loss of life can occur when people are caught in the path of snow avalanches (Grossman, 1999). Increasing winter recreation, including skiing, snowboarding, snowmobiling, snowshoeing, and climbing in mountainous areas, has increased the likelihood of people encountering snow avalanches (fig. 1). Explosives are used by most ski areas and State highway departments throughout the Western United States to control the release of snow avalanches, thus minimizing the loss of human life during winter recreation and highway travel (fig. 2). Common explosives used for snow avalanche control include trinitrotoluene (TNT), pentaerythritoltetranitrate (PETN), cyclotrimethylenetrinitramine (RDX), tetrytol, ammonium nitrate, and nitroglycerin (Perla and Martinelli, 1975). During and after snowfall or wind loading of potential avalanche slopes, ski patrollers and Utah Department of Transportation personnel deliver explosive charges onto predetermined targets to artificially release snow avalanches, thereby rendering the slope safer for winter activities. Explosives can be thrown by hand onto target zones or shot from cannons for more remote delivery of explosive charges. Hand-delivered charges typically contain about 2 pounds of TNT or its equivalent (Perla and Martinelli, 1975). Depending on the size of the ski area, acreage of potential avalanche terrain, and weather conditions, the annual quantity of explosives used during a season of snow avalanche control can be substantial. For example, the three ski areas of Alta, Snowbird, and Brighton, plus the Utah Department of Transportation, may use as many as 11,200 hand charges per year (Wasatch Powderbird Guides, unpub. data, 1999) for snow avalanche control in Big and Little Cottonwood Canyons (fig. 3). If each charge is assumed to weigh 2 pounds, this equates to about 22,400 pounds of explosive hand charges per year. In addition, 2,240 to 3,160 Avalauncher rounds and 626 to 958 military artillery rounds (explosive mass not specified) are used each year by the three ski areas and the Utah Department of Transportation for snow avalanche control in Big and Little Cottonwood Canyons (Wasatch Powderbird Guides, unpub. data, 1999). The other ski area in Big Cottonwood Canyon, Brighton, uses about 2,000 pounds of explosives per year for snow avalanche control (Michele Weidner, Cirrus Ecological Solutions consultant, written commun., 2001).

Utah↗
USGS2010

Water quality and ecological condition of urban streams in Independence, Missouri, June 2005 through December 2008

To identify the sources of selected constituents in urban streams and better understand processes affecting water quality and their effects on the ecological condition of urban streams and the Little Blue River in Independence, Missouri the U.S. Geological Survey in cooperation with the City of Independence Water Pollution Control Department initiated a study in June 2005 to characterize water quality and evaluate the ecological condition of streams within Independence. Base-flow and stormflow samples collected from five sites within Independence, from June 2005 to December 2008, were used to characterize the physical, chemical, and biologic effects of storm runoff on the water quality in Independence streams and the Little Blue River. The streams draining Independence-Rock Creek, Sugar Creek, Mill Creek, Fire Prairie Creek, and the Little Blue River-drain to the north and the Missouri River. Two small predominantly urban streams, Crackerneck Creek [12.9-square kilometer (km2) basin] and Spring Branch Creek (25.4-km2 basin), were monitored that enter into the Little Blue River between upstream and downstream monitoring sites. The Little Blue River above the upstream site is regulated by several reservoirs, but streamflow is largely uncontrolled. The Little Blue River Basin encompasses 585 km2 with about 168 km2 or 29 percent of the basin lying within the city limits of Independence. Water-quality samples also were collected for Rock Creek (24.1-km2 basin) that drains the western part of Independence. Data collection included streamflow, physical properties, dissolved oxygen, chloride, metals, nutrients, common organic micro-constituents, and fecal indicator bacteria. Benthic macroinvertebrate community surveys and habitat assessments were conducted to establish a baseline for evaluating the ecological condition and health of streams within Independence. Additional dry-weather screenings during base flow of all streams draining Independence were conducted to identify point-source discharges and other sources of potential contamination. Regression models were used to estimate continuous and annual flow-weighted concentrations, loadings, and yields for chloride, total nitrogen, total phosphorus, suspended sediment, and Escherichia coli bacteria densities. Base-flow and stormflow water-quality samples were collected at five sites within Independence. Base-flow samples for Rock Creek and two tributary streams to the Little Blue River exceeded recommended U.S. Environmental Protection Agency standards for the protection of aquatic life for total nitrogen and total phosphorus in about 90 percent of samples, whereas samples collected at two Little Blue River sites exceeded both the total nitrogen and total phosphorus standards less often, about 30 percent of the time. Dry-weather screening identified a relatively small number (14.0 percent of all analyses) of potential point-source discharges for total chlorine, phenols, and anionic surfactants. Stormflow had larger median measured concentrations of total common organic micro-constituents than base flow. The four categories of common organic micro-constituents with the most total detections in stormflow were pesticides (100 percent), polyaromatic hydrocarbons and combustion by-products (99 percent), plastics (93 percent), and stimulants (91 percent). Most detections of common organic micro-constituents were less than 2 micrograms per liter. Median instantaneous Escherichia coli densities for stormflow samples showed a 21 percent increase measured at the downstream site on the Little Blue River from the sampled upstream site. Using microbial source-tracking methods, less than 30 percent of Escherichia coli bacteria in samples were identified as having human sources. Base-flow and stormflow data were used to develop regression equations with streamflow and continuous water-quality data to estimate daily concentrations, loads, and yields of various water-quality contaminants.

Scientific Investigations Report↗
USGS2022

Environmental implications of Ptolemaic Period rodents and shrews from the Sacred Falcon Necropolis at Quesna, Egypt (Mammalia: Muridae and Soricidae)

Background Assemblages of mummified and preserved animals in necropoleis of Ptolemaic Period Egypt (ca. 332–30 BC) document some aspects of the ceremonial and religious practices of the ancient Egyptians, but study of these animal remains can also provide insight into the local environments in which the animals and humans lived. Results Excavations of the Sacred Falcon Necropolis at Quesna in the Nile Delta have yielded many thousands of animal remains, mostly of raptors, but also of a lesser number of small, wild mammals. Among the latter, we identified four species of murid rodents (Rodentia: Muridae) and five species of shrews (Eulipotyphla: Soricidae). The soricids are of particular interest because they represent a more diverse assemblage of species than occurs in the delta today. They include one species, Crocidura gueldenstaedtii (Pallas, 1811), that no longer occurs in the delta and another, C. fulvastra (Sundevall, 1843), that is now extirpated from Egypt. Conclusions The coexistence of this diverse small mammal community suggests that a greater availability and variety of mesic habitats were present during the Ptolemaic Period than occur there now. The local mammal faunas recovered at Quesna and other well-studied ancient Egyptian sites together provide evidence of a richer, more complex regional environment along the Nile Valley. They also provide important insight regarding the biogeography of the individual species comprising the faunas and about the extent of faunal turnover since the Ptolemaic Period.

BMC Ecology and Evolution↗
USGS2022

Offspring sex ratios are male-biased reflecting sex-biased dispersal in Idaho, USA, wolves.

Offspring sex ratios can vary widely across species, and the reasons for such variation have long intrigued ecologists. For group-living animals, predicting offspring sex ratios as a function of group and environmental characteristics can be challenging. Additionally, mortality of group members can upend traditional theory used to explain offspring sex ratios observed in populations. Gray wolves ( Canis lupus ) in Idaho, USA, are an excellent study species for asking questions about offspring sex ratios given their group-living behavior and persistent exposure to human-caused mortality. I hypothesized that offspring sex ratios would be influenced by the characteristics of individuals, groups, and populations. I generated genotypes for 419 adult and 400 pup wolves during 2008–2018. There was a significant male-bias in litters of wolf pups with nearly 12% more male pups born than females. The individual, group, and population variables I considered did not have significant associations with offspring sex ratios. Local resource competition helped explain offspring sex ratios in wolves in my study system, but not local resource enhancement theory. Although female helpers have been shown to help slightly more than males, offspring sex ratios did not favor the helping sex suggesting that the overall benefit of female helpers may have been negligible in wolf groups during my study. Three wolf groups consistently overproduced males, the dispersing sex, suggesting that habitat quality was poor in their territories. The male-biased offspring sex ratios observed throughout this population reflect sex-biased dispersal in wolves in Idaho. Such a pattern suggests breeding females may be reducing local resource competition (e.g., mates and successful reproduction) by producing more males than females.

Idaho↗
USGS1960

Ecological systems and the water resources

In ancient Sparta there were two principal classes of society, the citizen and the helot. The citizen was trained principally to be a warrior. The helot, a serf, was the tiller of the land but could be called to military duty. The history of Herodotus makes it amply clear that making war was the biggest business of the times. Because the Spartans were always marching off to war with someone, they found the landbound position of their city, located as its is in a small central basin nearly surrounded by mountains, somewhat of a disadvantage. When they were under attack, of course, this situation was a favorable one inasmuch as a seaborne enemy had to march inland to come to grips with the Lacedaemonians. The relatively small size of the independent states meant that the Spartans had no direct access through their own lands to the sea. There is evidence that the Spartans reached an agreement with surrounding states concerning a free corridor. There would be maintained by all the Grecian states of the Peloponnesus an access route stretching essentially from Sparta to Corinth, through which a marching army could have access to a seaport. As a secondary benefit, this no man's land, which in our western lingo might be called a stock driveway, allowed merchants and their caravans to move freely between the flourishing trading port of Corinth and the inland cities to the south and west. Apparently one portion of the agreement between the states with regard to the use of this access zone was that there should be no permanent agricultural or grazing in the driveway. As a result, through several centuries B.C. during which there was high population density in the Aegean area, one strip of land was exempted from the pressures of grazing, lumbering, and agriculture which characterized most of the rest of the landscape. Today this driveway maintains a forest cover. In contrast, mountainsides nearby with an even larger annual rainfall support hardly a tree. It is not entirely apparent why subsequent centuries did not see this area denuded. Even with the scanty details known to me it seems clear that the peculiar history of this one area potentially offers us a greater insight into some aspects of forest and land conditions of classical times than extant written records. The several references to sources of timber and cutting of forests contained in the vivid chronicle of Herodotus are valuable, but they lack species identification for the most part. Though rich in human understanding and psychological insight, his history strongly resembles the travel sagas of the Spanish Conquistadors of our Southwest, who had no real eye for "country." Even a careful reading of the works of early travelers such as Coronado, Garces, and Espejo, gives no picture of the nature of the country, its vegetation, or its rivers. To describe a biota there is no substitute for a sample. It is logical to ask what one might want to know which would require the preservation of a sample. Whether such a question is asked at all is a reflection on the stage of intellectual maturity of a civilization. We take for granted that there is social gain in the erection and maintenance of a museum of fine arts, a museum of natural history, or a historical museum. Sooner or later we should be mature enough to extend this concept to include a "museum" consisting of samples of land types as nearly as possible unaffected by man.

Circular↗
USGS2006

Response of Everglades tree islands to environmental change

Tree islands are centers of biodiversity within the Florida Everglades, USA, but the factors controlling their distribution, formation, and development are poorly understood. We use pollen assemblages from tree islands throughout the greater Everglades ecosystem to reconstruct the timing of tree island formation, patterns of development, and response to specific climatic and environmental stressors. These data indicate that fixed (teardrop-shaped) and strand tree islands developed well before substantial human alteration of the system, with initial tree island vegetation in place between 3500 and 500 calibrated years before present (cal yr BP), depending on the location in the Everglades wetland. Tree island development appears to have been triggered by regional- to global-scale climatic events at 2800 cal yr BP, 1600–1500 cal yr BP, 1200–1000 cal yr BP (early Medieval Warm Period), and 500–200 cal yr BP (Little Ice Age). These periods correspond to drought intervals documented in Central and South America and periods of southward displacement of the Intertropical Convergence Zone. The records indicate a coherence of climate patterns in both subtropical North America and the Northern Hemisphere Neotropics. Water management practices of the 20th century altered plant communities and size of tree islands throughout the Everglades. Responses range from loss of tree islands due to artificially long hydroperiods and deep water to expansion of tree islands after flow reductions. These data provide evidence for the rapidity of tree island response to specific hydrologic change and facilitate prediction of the response to future changes associated with Everglades restoration plans.

Florida↗
USGS2013

Evolution of a reassortant North American gull influenza virus lineage: drift, shift and stability

Background: The role of gulls in the ecology of avian influenza (AI) is different than that of waterfowl. Different constellations of subtypes circulate within the two groups of birds and AI viruses isolated from North American gulls frequently possess reassortant genomes with genetic elements from both North America and Eurasian lineages. A 2008 isolate from a Newfoundland Great Black-backed Gull contained a mix of North American waterfowl, North American gull and Eurasian lineage genes. Methods: We isolated, sequenced and phylogenetically compared avian influenza viruses from 2009 Canadian wild birds. Results: We analyzed six 2009 virus isolates from Canada and found the same phylogenetic lineage had persisted over a larger geographic area, with an expanded host range that included dabbling and diving ducks as well as gulls. All of the 2009 virus isolates contained an internal protein coding set of genes of the same Eurasian lineage genes except PB1 that was from a North American lineage, and these genes continued to evolve by genetic drift. We show evidence that the 2008 Great Black-backed Gull virus was derived from this lineage with a reassortment of a North American PA gene into the more stable core set of internal protein coding genes that has circulated in avian populations for at least 2 years. From this core, the surface glycoprotein genes have switched several times creating H13N6, H13N2, and H16N3 subtypes. These gene segments were from North American lineages except for the H16 and N3 vRNAs. Conclusions: This process appears similar to genetic shifts seen with swine influenza where a stable "triple reassortant internal gene" core has circulated in swine populations with genetic shifts occurring with hemaggluttinin and neuraminidase proteins getting periodically switched. Thus gulls may serve as genetic mixing vessels for different lineages of avian influenza, similar to the role of swine with regards to human influenza. These findings illustrate the need for continued surveillance in gull and waterfowl populations, both on the Pacific and especially Atlantic coasts of North America, to document virus intercontinental movement and the role of gull species in the evolution and epidemiology of AI.

Virology Journal↗
USGS2013

A multi-decade time series of kelp forest community structure at San Nicolas Island, California

San Nicolas Island is surrounded by broad areas of shallow subtidal habitat, characterized by dynamic kelp forest communities that undergo dramatic and abrupt shifts in community composition. Although these reefs are fished, the physical isolation of the island means that they receive less impact from human activities than most reefs in Southern California, making San Nicolas an ideal place to evaluate alternative theories about the dynamics of these communities. Here we present monitoring data from seven sampling stations surrounding the island, including data on fish, invertebrate, and algal abundance. These data are unusual among subtidal monitoring data sets in that they combine relatively frequent sampling (twice per year) with an exceptionally long time series (since 1980). Other outstanding qualities of the data set are the high taxonomic resolution captured and the monitoring of permanent quadrats and swaths where the history of the community structure at specific locations has been recorded through time. Finally, the data span a period that includes two of the strongest ENSO events on record, a major shift in the Pacific decadal oscillation, and the reintroduction of sea otters to the island in 1987 after at least 150 years of absence. These events provide opportunities to evaluate the effects of bottom-up forcing, top-down control, and physical disturbance on shallow rocky reef communities.

California↗
USGS2015

Winter habitat associations of blackbirds and starlings wintering in the south-central United States

Birds can cause extensive crop damage in the United States. In some regions, depredating species comprise a substantial portion of the total avian population, emphasizing their importance both economically and ecologically. We used the National Audubon Society Christmas Bird Count data from the south-central United States and mixed-effects models to identify habitat factors associated with population trend and abundance for 5 species: red-winged blackbird ( Agelaius phoeniceus ), common grackle ( Quiscalus quiscula ), rusty blackbird ( Euphagus carolinus ), Brewer’s blackbird ( Euphagus cyanocephalus ), and European starling ( Sturnus vulgaris ). Overall, we found positive associations between bird abundance and agricultural land-cover for all species. Relationships between abundance and other land-cover types were species-specific, often with contrasting relationships among species. Likewise, we found no consistent patterns among abundance and climate. Of the 5 species, only red-winged blackbirds had a significant population trend in our study area, increasing annually by 2.4%. There was marginal evidence to suggest population increases for rusty blackbirds, whereas all other species showed no trend in population size within our study area. Our study provides managers who are interested in limiting crop damage in the south-central United States with novel information on habitat associations in the region that could be used to improve management and control actions.

Alabama, Arkansas, Kansas, Louisiana, Mississippi,↗
USGS2021

Establishing the foundation for the global observing system for marine life

Maintaining healthy, productive ecosystems in the face of pervasive and accelerating human impacts including climate change requires globally coordinated and sustained observations of marine biodiversity. Global coordination is predicated on an understanding of the scope and capacity of existing monitoring programs, and the extent to which they use standardized, interoperable practices for data management. Global coordination also requires identification of gaps in spatial and ecosystem coverage, and how these gaps correspond to management priorities and information needs. We undertook such an assessment by conducting an audit and gap analysis from global databases and structured surveys of experts. Of 371 survey respondents, 203 active, long-term (>5 years) observing programs systematically sampled marine life. These programs spanned about 7% of the ocean surface area, mostly concentrated in coastal regions of the United States, Canada, Europe, and Australia. Seagrasses, mangroves, hard corals, and macroalgae were sampled in 6% of the entire global coastal zone. Two-thirds of all observing programs offered accessible data, but methods and conditions for access were highly variable. Our assessment indicates that the global observing system is largely uncoordinated which results in a failure to deliver critical information required for informed decision-making such as, status and trends, for the conservation and sustainability of marine ecosystems and provision of ecosystem services. Based on our study, we suggest four key steps that can increase the sustainability, connectivity and spatial coverage of biological Essential Ocean Variables in the global ocean: (1) sustaining existing observing programs and encouraging coordination among these; (2) continuing to strive for data strategies that follow FAIR principles (findable, accessible, interoperable, and reusable); (3) utilizing existing ocean observing platforms and enhancing support to expand observing along coasts of developing countries, in deep ocean basins, and near the poles; and (4) targeting capacity building efforts. Following these suggestions could help create a coordinated marine biodiversity observing system enabling ecological forecasting and better planning for a sustainable use of ocean resources.

Frontiers in Marine Science↗
USGS2015

Spatiotemporal analysis of gene flow in Chesapeake Bay Diamondback Terrapins (Malaclemys terrapin)

There is widespread concern regarding the impacts of anthropogenic activities on connectivity among populations of plants and animals, and understanding how contemporary and historical processes shape metapopulation dynamics is crucial for setting appropriate conservation targets. We used genetic data to identify population clusters and quantify gene flow over historical and contemporary time frames in the Diamondback Terrapin ( Malaclemys terrapin ). This species has a long and complicated history with humans, including commercial over-harvesting and subsequent translocation events during the early twentieth century. Today, terrapins face threats from habitat loss and mortality in fisheries bycatch. To evaluate population structure and gene flow among Diamondback Terrapin populations in the Chesapeake Bay region, we sampled 617 individuals from 15 localities, and screened individuals at 12 polymorphic microsatellite loci. Our goals were to demarcate metapopulation structure, quantify genetic diversity, estimate effective population sizes, and document temporal changes in gene flow. We found that terrapins in the Chesapeake Bay region harbor high levels of genetic diversity and form four populations. Effective population sizes were variable. Among most population comparisons, estimates of historical and contemporary terrapin gene flow were generally low ( m ≈ 0.01). However, we detected a substantial increase in contemporary gene flow into Chesapeake Bay from populations outside the bay, as well as between two populations within Chesapeake Bay, possibly as a consequence of translocations during the early twentieth century. Our study shows that inferences across multiple time scales are needed to evaluate population connectivity, especially as recent changes may identify threats to population persistence.

Maryland↗
USGS2005

Influence of barriers to movement on within-watershed genetic variation of coastal cutthroat trout

Because human land use activities often result in increased fragmentation of aquatic and terrestrial habitats, a better understanding of the effects of fragmentation on the genetic heterogeneity of animal populations may be useful for effective management. We used eight microsatellites to examine the genetic structure of coastal cutthroat trout (Oncorhynchus clarki clarki) in Camp Creek, an isolated headwater stream in western Oregon. Our objectives were to determine if coastal cutthroat trout were genetically structured within streams and to assess the effects of natural and anthropogenic barriers on coastal cutthroat trout genetic variation. Fish sampling occurred at 10 locations, and allele frequencies differed significantly among all sampling sections. Dispersal barriers strongly influenced coastal cutthroat trout genetic structure and were associated with reduced genetic diversity and increased genetic differentiation. Results indicate that Camp Creek coastal cutthroat trout exist as many small, partially independent populations that are strongly affected by genetic drift. In headwater streams, barriers to movement can result in genetic and demographic isolation leading to reduced coastal cutthroat trout genetic diversity, and potentially compromising long-term population persistence. When habitat fragmentation eliminates gene flow among small populations, similar results may occur in other species.

Oregon↗
USGS2024

Photogrammetry-based body condition for monitoring an Arctic marine mammal experiencing habitat loss

Monitoring animal body condition can provide insight on population responses to environmental change. Pacific walruses ( Odobenus rosmarus divergens ) are experiencing loss of their sea ice habitat which has decreased the time that females spend foraging during a critical period of pregnancy and lactation. Here we investigate the potential for body condition to track demographic change and be monitored via two-dimensional aerial imagery by (1) examining whether walrus somatic growth and body mass data tracked estimated historic demographic changes, (2) collecting morphometric and body mass data and aerial imagery of walruses in human care to determine if sex, age group, and body size and condition can be determined from imagery, and (3) examining aerial imagery from a large coastal haulout used primarily by females and young to estimate potential sample sizes of measurable walruses. Body mass and growth in body length decreased between the last 1970s and early 1980s concurrent with a period when the population apparently approached carrying capacity and subsequently declined. Measures from aerial imagery (1) accurately distinguished reproductive age females from subadults and adult males and (2) enabled body mass estimates with 6-7% error using either areal footprint or a combination of length and width. We found a mean of 216 ± 77 walruses appropriately positioned for measurement from aerial surveys of the haulout enabling measurements of ≥7000 individuals annually via repeated daily imagery. Our results suggest that body mass of reproductive age females and growth of dependent young may be useful indicators to augment monitoring of the Pacific walrus population and can be achieved via non-invasive aerial imagery collections.

Alaska↗
USGS2026

Investigating hydrologic alteration under historical and future scenarios in the Mobile River and Perdido River basins using the cubist algorithm

This study investigates the impacts of human activities and climate variability on hydrologic alterations in the Mobile River and Perdido River Basins of Alabama. The research uses a machine learning approach, specifically cubist models, to quantify and predict changes in flow duration curves (FDCs) under both historical (1980–2009) and future climate scenarios. Future climate projections include the Representative Concentration Pathways (RCP 4.5 and RCP 8.5) and the Shared Socioeconomic Pathways (SSP2 4.5 and SSP5 8.5), evaluated for two future periods: 1980–2069 and 1980–2099. The models incorporate a wide range of covariates, including basin geomorphology, aquifer characteristics, land cover, water storage, environmental factors, solar radiation, census data, and water use data. Under the baseline period (1980–2009), most level 12 hydrologic unit codes (HUC12s) in both basins showed alterations, with substantial differences observed between pre- and post-alteration FDCs. The model performance varied, with a Nash–Sutcliffe Efficiency between 0.91 and 0.95 for testing and between 0.98 and 0.99 for training during the baseline period. Future projections under the RCP 4.5 and RCP 8.5 scenarios generally differed significantly from baseline conditions across all flow regimes ( p < 0.05). In contrast, SSP2 4.5 showed comparatively limited statistical significance, while SSP5 8.5 exhibited significant departures from baseline conditions across all flow regimes, reflecting the greater influence of high-emissions climate forcing on projected hydrologic alterations. Overall, the RCP scenarios projected more widespread statistically significant changes than the corresponding SSP scenarios at the same forcing level, particularly when comparing RCP4.5 with SSP2-4.5, while both RCP8.5 and SSP5-8.5 consistently indicated greater hydrologic alterations than their moderate-emissions counterparts. These findings highlight the importance of considering different flow regimes when assessing the impacts of climate variability on streamflow. This study contributes to the understanding of hydrologic alterations in the Mobile River and Perdido River Basins, providing insights for water resource management and ecological conservation efforts in the region.

Alabama↗
USGS2015

Rapid isolation of microsatellite DNAs and identification of polymorphic mitochondrial DNA regions in the fish rotan (Perccottus glenii) invading European Russia

Human-mediated translocations and subsequent large-scale colonization by the invasive fish rotan (Perccottus glenii Dybowski, 1877; Perciformes, Odontobutidae), also known as Amur or Chinese sleeper, has resulted in dramatic transformations of small lentic ecosystems. However, no detailed genetic information exists on population structure, levels of effective movement, or relatedness among geographic populations of P. glenii within the European part of the range. We used massively parallel genomic DNA shotgun sequencing on the semiconductor-based Ion Torrent Personal Genome Machine (PGM) sequencing platform to identify nuclear microsatellite and mitochondrial DNA sequences in P. glenii from European Russia. Here we describe the characterization of nine nuclear microsatellite loci, ascertain levels of allelic diversity, heterozygosity, and demographic status of P. glenii collected from Ilev, Russia, one of several initial introduction points in European Russia. In addition, we mapped sequence reads to the complete P. glenii mitochondrial DNA sequence to identify polymorphic regions. Nuclear microsatellite markers developed for P. glenii yielded sufficient genetic diversity to: (1) produce unique multilocus genotypes; (2) elucidate structure among geographic populations; and (3) provide unique perspectives for analysis of population sizes and historical demographics. Among 4.9 million filtered P. glenii Ion Torrent PGM sequence reads, 11,304 mapped to the mitochondrial genome (NC_020350). This resulted in 100 % coverage of this genome to a mean coverage depth of 102X. A total of 130 variable sites were observed between the publicly available genome from China and the studied composite mitochondrial genome. Among these, 82 were diagnostic and monomorphic between the mitochondrial genomes and distributed among 15 genome regions. The polymorphic sites (N = 48) were distributed among 11 mitochondrial genome regions. Our results also indicate that sequence reads generated from two three-hour runs on the Ion Torrent PGM can generate a sufficient number of nuclear and mitochondrial markers to improve understanding of the evolutionary and ecological dynamics of non-model and in particular, invasive species.

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