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At least 1,531 records · Page 85Linked to original sources

Physiological and gene transcription assays to assess responses of mussels to environmental changes

Coastal regions worldwide face increasing management concerns due to natural and anthropogenic forces that have the potential to significantly degrade nearshore marine resources. The goal of our study was to develop and test a monitoring strategy for nearshore marine ecosystems in remote areas that are not readily accessible for sampling. Mussel species have been used extensively to assess ecosystem vulnerability to multiple, interacting stressors. We sampled bay mussels ( Mytilus trossulus ) in 2015 and 2016 from six intertidal sites in Lake Clark and Katmai National Parks and Preserves, in south-central Alaska. Reference ranges for physiological assays and gene transcription were determined for use in future assessment efforts. Both techniques identified differences among sites, suggesting influences of both large-scale and local environmental factors and underscoring the value of this combined approach to ecosystem health monitoring.

Alaska↗

Quality of streams in Johnson County, Kansas, 2002--10

Stream quality in Johnson County, northeastern Kansas, was assessed on the basis of land use, hydrology, stream-water and streambed-sediment chemistry, riparian and in-stream habitat, and periphyton and macroinvertebrate community data collected from 22 sites during 2002 through 2010. Stream conditions at the end of the study period are evaluated and compared to previous years, stream biological communities and physical and chemical conditions are characterized, streams are described relative to Kansas Department of Health and Environment impairment categories and water-quality standards, and environmental factors that most strongly correlate with biological stream quality are evaluated. The information is useful for improving water-quality management programs, documenting changing conditions with time, and evaluating compliance with water-quality standards, total maximum daily loads (TMDLs), National Pollutant Discharge Elimination System (NPDES) permit conditions, and other established guidelines and goals. Constituent concentrations in water during base flow varied across the study area and 2010 conditions were not markedly different from those measured in 2003, 2004, and 2007. Generally the highest specific conductance and concentrations of dissolved solids and major ions in water occurred at urban sites except the upstream Cedar Creek site, which is rural and has a large area of commercial and industrial land less than 1 mile upstream on both sides of the creek. The highest base-flow nutrient concentrations in water occurred downstream from wastewater treatment facilities. Water chemistry data represent base-flow conditions only, and do not show the variability in concentrations that occurs during stormwater runoff. Constituent concentrations in streambed sediment also varied across the study area and some notable changes occurred from previously collected data. High organic carbon and nutrient concentrations at the rural Big Bull Creek site in 2003 decreased to at least one-fourth of those concentrations in 2007 and 2010 likely because of the reduction in upstream wastewater discharge contributions. The highest concentrations of trace metals in 2010 occurred at urban sites on Mill and Indian Creeks. Zinc was the only metal to exceed the probable effects concentration in 2010, which occurred at a site on Indian Creek. In 2007, chromium and nickel at the upstream urban Cedar Creek site exceeded the probable effects concentrations, and in 2003, no metals exceeded the probable effects concentrations. Of 72 organic compounds analyzed in streambed sediment, 26 were detected including pesticides, polycyclic aromatic hydrocarbons (PAHs), fuel products, fragrances, preservatives, plasticizers, manufacturing byproducts, flame retardants, and disinfectants. All 6 PAH compounds analyzed were detected, and the probable effects concentrations for 4 of the 6 PAH compounds analyzed were exceeded in 2010. Only five pesticide compounds were detected in streambed sediment, including carbazole and four pyrethroid compounds. Chronic toxicity guidelines for pyrethroid compounds were exceeded at five sites. Biological conditions reflected a gradient in urban land use, with the less disturbed streams located in rural areas of Johnson County. About 19 percent of sites in 2010 (four sites) were fully supporting of aquatic life on the basis of the four metrics used by Kansas Department of Health and Environment to categorize sites. This is a notable difference compared to previous years when no sites (in 2003 and 2004) or just one site (in 2007) was fully supporting of aquatic life. Multimetric macroinvertebrate scores improved at the Big Bull Creek site where wastewater discharges were reduced in 2007. Environmental variables that consistently were highly negatively correlated with biological conditions were percent impervious surface and percent urban land use. In addition, density of stormwater outfall points adjacent to streams was significantly negatively correlated with biological conditions. Specific conductance of water and sum of PAH concentrations in streambed sediment also were significantly negatively correlated with biological conditions. Total nitrogen in water and total phosphorus in streambed sediment were correlated with most of the invertebrate variables, which is a notable difference from previous analyses using smaller datasets, in which nutrient relations were weak or not detected. The most important habitat variables were sinuosity, length and continuity of natural buffers, riffle substrate embeddedness, and substrate cover diversity, each of which was correlated with all invertebrate metrics including a 10-metric combined score. Correlation analysis indicated that if riparian and in-stream habitat conditions improve then so might invertebrate communities and stream biological quality. Sixty-two percent of the variance in macroinvertebrate community metrics was explained by the single environmental factor, percent impervious surface. Invertebrate responses to urbanization in Johnson County indicated linearity rather than identifiable thresholds. Multiple linear regression models developed for each of the four macroinvertebrate metrics used to determine aquatic-life-support status indicated that percent impervious surface, as a measure of urban land use, explained 34 to 67 percent of the variability in biological communities. Results indicate that although multiple factors are correlated with stream quality degradation, general urbanization, as indicated by impervious surface area or urban land use, consistently is determined to be the fundamental factor causing change in stream quality. Effects of urbanization on Johnson County streams are similar to effects described in national studies that assess effects of urbanization on stream health. Individually important environmental factors such as specific conductance of water, PAHs in streambed sediment, and stream buffer conditions, are affected by urbanization and, collectively, all contribute to stream impairments. Policies and management practices that may be most important in protecting the health of streams in Johnson County are those minimizing the effects of impervious surface, protecting stream corridors, and decreasing the loads of sediment, nutrients, and toxic chemicals that directly enter streams through stormwater runoff and discharges.

Kansas↗

Response of algal metrics to nutrients and physical factors and identification of nutrient thresholds in agricultural streams

Many streams within the United States are impaired due to nutrient enrichment, particularly in agricultural settings. The present study examines the response of benthic algal communities in agricultural and minimally disturbed sites from across the western United States to a suite of environmental factors, including nutrients, collected at multiple scales. The first objective was to identify the relative importance of nutrients, habitat and watershed features, and macroinvertebrate trophic structure to explain algal metrics derived from deposition and erosion habitats. The second objective was to determine if thresholds in total nitrogen (TN) and total phosphorus (TP) related to algal metrics could be identified and how these thresholds varied across metrics and habitats. Nutrient concentrations within the agricultural areas were elevated and greater than published threshold values. All algal metrics examined responded to nutrients as hypothesized. Although nutrients typically were the most important variables in explaining the variation in each of the algal metrics, environmental factors operating at multiple scales also were important. Calculated thresholds for TN or TP based on the algal metrics generated from samples collected from erosion and deposition habitats were not significantly different. Little variability in threshold values for each metric for TN and TP was observed. The consistency of the threshold values measured across multiple metrics and habitats suggest that the thresholds identified in this study are ecologically relevant. Additional work to characterize the relationship between algal metrics, physical and chemical features, and nuisance algal growth would be of benefit to the development of nutrient thresholds and criteria.

Environmental Monitoring and Assessment↗

Simulation of nutrient and sediment concentrations and loads in the Delaware inland bays watershed: Extension of the hydrologic and water-quality model to ungaged segments

Rapid population increases, agriculture, and industrial practices have been identified as important sources of excessive nutrients and sediments in the Delaware Inland Bays watershed. The amount and effect of excessive nutrients and sediments in the Inland Bays watershed have been well documented by the Delaware Geological Survey, the Delaware Department of Natural Resources and Environmental Control, the U.S. Environmental Protection Agency’s National Estuary Program, the Delaware Center for Inland Bays, the University of Delaware, and other agencies. This documentation and data previously were used to develop a hydrologic and water-quality model of the Delaware Inland Bays watershed to simulate nutrients and sediment concentrations and loads, and to calibrate the model by comparing concentrations and streamflow data at six stations in the watershed over a limited period of time (October 1998 through April 2000). Although the model predictions of nutrient and sediment concentrations for the calibrated segments were fairly accurate, the predictions for the 28 ungaged segments located near tidal areas, where stream data were not available, were above the range of values measured in the area. The cooperative study established in 2000 by the Delaware Department of Natural Resources and Environmental Control, the Delaware Geological Survey, and the U.S. Geological Survey was extended to evaluate the model predictions in ungaged segments and to ensure that the model, developed as a planning and management tool, could accurately predict nutrient and sediment concentrations within the measured range of values in the area. The evaluation of the predictions was limited to the period of calibration (1999) of the 2003 model. To develop estimates on ungaged watersheds, parameter values from calibrated segments are transferred to the ungaged segments; however, accurate predictions are unlikely where parameter transference is subject to error. The unexpected nutrient and sediment concentrations simulated with the 2003 model were likely the result of inappropriate criteria for the transference of parameter values. From a model-simulation perspective, it is a common practice to transfer parameter values based on the similarity of soils or the similarity of land-use proportions between segments. For the Inland Bays model, the similarity of soils between segments was used as the basis to transfer parameter values. An alternative approach, which is documented in this report, is based on the similarity of the spatial distribution of the land use between segments and the similarity of land-use proportions, as these can be important factors for the transference of parameter values in lumped models. Previous work determined that the difference in the variation of runoff due to various spatial distributions of land use within a watershed can cause substantialloss of accuracy in the model predictions. The incorporation of the spatial distribution of land use to transfer parameter values from calibrated to uncalibrated segments provided more consistent and rational predictions of flow, especially during the summer, and consequently, predictions of lower nutrient concentrations during the same period. For the segments where the similarity of spatial distribution of land use was not clearly established with a calibrated segment, the similarity of the location of the most impervious areas was also used as a criterion for the transference of parameter values. The model predictions from the 28 ungaged segments were verified through comparison with measured in-stream concentrations from local and nearby streams provided by the Delaware Department of Natural Resources and Environmental Control. Model results indicated that the predicted edge-of-stream total suspended solids loads in the Inland Bays watershed were low in comparison to loads reported for the Eastern Shore of Maryland from the Chesapeake Bay watershed model. The flatness of the terrain and the low annual surface runoff are important factors in determining the amount of detached sediment from the land that is delivered to streams. The highest predicted total suspended solids loads were found in the southern part of the watershed, where the values are associated with high total streamflow and a high surface-runoff component, and related to soil and aquifer permeability and land use. Nutrient loads from model segments in the southern part of the Inland Bays watershed were also higher than those measured in the northern part of the basin, due to relatively high runoff and the substantial amount of available organic fertilizer (animal waste) that results in over-application of organic fertilizer to crops. Time series of simulated hourly concentrations indicated a seasonal pattern in the simulated base flow for total nitrogen, with the lowest values occurring during the summer and the highest values during the winter months. Total phosphorus and total-suspended-solids concentrations were less seasonal and were more storm-dependent; in general, base-flow concentrations of total phosphorus and total suspended solids were low. During storm events, the total nitrogen concentrations tended to be diluted and total phosphorus concentrations tended to rise sharply. Nitrogen was transported mainly in the aqueous phase and largely through ground water, whereas phosphorus was strongly associated with sediment, which washes off during rainfall events.

Delaware↗

Indicators of ecosystem structure and function for the Upper Mississippi River System

This report documents the development of quantitative measures (indicators) of ecosystem structure and function for use in a Habitat Needs Assessment (HNA) for the Upper Mississippi River System (UMRS). HNAs are led periodically by the U.S. Army Corps of Engineers’ Upper Mississippi River Restoration (UMRR) Program, which is the primary habitat restoration program on the UMRS. The UMRR Program helps determine how Federal, State and nongovernmental agencies can best address environmental issues on one of the world’s largest and most diverse river systems. Each indicator in this report represents at least one management objective developed for the river system. These objectives were developed in a previous planning effort using an ecosystem management conceptual framework (USACE, 2011). The objectives represent five essential ecosystem characteristics: hydraulics and hydrology, biogeochemistry, geomorphology, habitat, and biota. Subsequent to the 2011 planning effort, the UMRR increased its focus on improving the health and resilience of the UMRS. The indicators presented here are based on the five essential ecosystem characteristics and four aspects of ecosystems thought to support general ecosystem resilience (the ability of an ecosystem to adapt and respond to disturbances): (1) connectivity, (2) diversity and redundancy, (3) controlling variables, and (4) slow processes. Thus, we developed indicators that quantify both essential ecosystem characteristics and characteristics of a resilient river system. The indicators documented in this report focus on important aspects of river floodplain hydrogeomorphology, given the fundamental role hydrogeomorphology plays in determining habitat conditions and ecosystem health and resilience at broad geographic scales. The information contained within this report provides a broader scale (for example, system-wide) context for management decisions made at finer scales (for example, within river reaches or at project sites) and is designed for use in the formal system-wide Habitat Needs Assessment II (HNA–II) led by the UMRR Program.

Upper Mississippi River System↗

Assessing vegetation recovery from energy development using a dynamic reference approach

Ecologically relevant references are useful for evaluating ecosystem recovery, but references that are temporally static may be less useful when environmental conditions and disturbances are spatially and temporally heterogeneous. This challenge is particularly acute for ecosystems dominated by sagebrush ( Artemisia spp.), where communities may require decades to recover from disturbance. We demonstrated application of a dynamic reference approach to studying sagebrush recovery using three decades of sagebrush cover estimates from remote sensing (1985–2018). We modelled recovery on former oil and gas well pads ( n = 1200) across southwestern Wyoming, USA, relative to paired references identified by the Disturbance Automated Reference Toolset. We also used quantile regression to account for unmodelled heterogeneity in recovery, and projected recovery from similar disturbance across the landscape. Responses to weather and site-level factors often differed among quantiles, and sagebrush recovery on former well pads increased more when paired reference sites had greater sagebrush cover. Little (<5%) of the landscape was projected to recover within 100 years for low to mid quantiles, and recovery often occurred at higher elevations with cool and moist annual conditions. Conversely, 48%–78% of the landscape recovered quickly (within 25 years) for high quantiles of sagebrush cover. Our study demonstrates advantages of using dynamic reference sites when studying vegetation recovery, as well as how additional inferences obtained from quantile regression can inform management.

Wyoming↗

Range condition as input to water quality monitoring in the northern Plains

Federal Clean Water Act requires that states develop Total Maximum Daily Loads (TMDLs) for water bodies. Once the state has developed an inventory of TMDLs, it is required to provide public notice of the report and have it approved by the Environmental Protection Agency. The South Dakota Department of Environment and Natural Resources (DENR) is using the USDA’s annualized Agricultural Non-Point Source Pollution Model to determine what land use changes are required to meet TMDL goals (South Dakota DENR, 2006). Of the approximately 450 parameters required for running the model, several are related to the condition of range and pasture sites and their respective management practices. Range condition is highly correlated with the nature of runoff occurring in a site. In addition to assisting the DENR, USGS is interested in improving its overall ability to monitor Northern Plains range condition with particular emphasis on the seven state study area (Colorado, Kansas, Montana, Nebraska, North Dakota, South Dakota, and Wyoming) being addressed by the Drought Monitoring, Carbon Cycle Research, Phenological Trends and other projects. It is understood than no one project can develop tools that adequately characterize the dynamics of the region’s rangelands, but by developing a suite of tools brought together from a number of projects there exists the opportunity to provide state, regional, and tribal land managers with the ability to address their particular needs.

Colorado, Kansas, Montana, Nebraska, North Dakota,↗

Evaluating temporal and spatial transferability of a tidal inundation model for foraging waterbirds

For ecosystem models to be applicable outside their context of development, temporal and spatial transferability must be demonstrated. This presents a challenge for modeling intertidal ecosystems where spatiotemporal variation arises at multiple scales. Models specializing in tidal dynamics are generally inhibited from having wider ecological applications by coarse spatiotemporal resolution or high user competency. The Tidal Inundation Model of Shallow-water Availability (TiMSA) uniquely simulates tides to empirically derive a time-integrated measure of availability for a shallow-water depth range defined by the user. To evaluate temporal and spatiotemporal transferability, we employed TiMSA at the development site in the Florida Keys and at novel subsites in the Florida Bay (application site) under a different time period (application period). We used foraging little blue herons ( Egretta caerulea ) as the ecological unit with which to constrain the model's “water depth window,” that is, range of water depths to estimate shallow-water availability. At the development site, temporally consistent water depth windows contrasted with interannual variation in shallow-water availability, which revealed short-term changes in Little Blue Heron foraging habitat. At the application site, water depth accuracy varied by subsite and was correlated with spatial error in bathymetric elevation. Although TiMSA parameters were sensitive to environmental temporal variation and uncertainty in spatial data, a spatially explicit water depth window generated reliable estimates of shallow-water conditions over space and time at the development and application sites. By exploring the contributing factors to model error, we provide solutions to reduce uncertainty of TiMSA parameters at potential application sites and recommendations for addressing bathymetric inaccuracy in digital elevation models. Accurately quantifying spatiotemporal changes of shallow water has implications for monitoring habitat conditions for tidally influenced species and projecting future changes to coastal ecosystems in response to anthropogenic stressors and natural disturbances such as sea level rise.

Florida↗

A caveat regarding diatom-inferred nitrogen concentrations in oligotrophic lakes

Atmospheric deposition of reactive nitrogen (Nr) has enriched oligotrophic lakes with nitrogen (N) in many regions of the world and elicited dramatic changes in diatom community structure. The lakewater concentrations of nitrate that cause these community changes remain unclear, raising interest in the development of diatom-based transfer functions to infer nitrate. We developed a diatom calibration set using surface sediment samples from 46 high-elevation lakes across the Rocky Mountains of the western US, a region spanning an N deposition gradient from very low to moderate levels (<1 to 3.2 kg Nr ha −1 year −1 in wet deposition). Out of the fourteen measured environmental variables for these 46 lakes, ordination analysis identified that nitrate, specific conductance, total phosphorus, and hypolimnetic water temperature were related to diatom distributions. A transfer function was developed for nitrate and applied to a sedimentary diatom profile from Heart Lake in the central Rockies. The model coefficient of determination (bootstrapping validation) of 0.61 suggested potential for diatom-inferred reconstructions of lakewater nitrate concentrations over time, but a comparison of observed versus diatom-inferred nitrate values revealed the poor performance of this model at low nitrate concentrations. Resource physiology experiments revealed that nitrogen requirements of two key taxa were opposite to nitrate optima defined in the transfer function. Our data set reveals two underlying ecological constraints that impede the development of nitrate transfer functions in oligotrophic lakes: (1) even in lakes with nitrate concentrations below quantification (<1 μg L −1 ), diatom assemblages were already dominated by species indicative of moderate N enrichment; (2) N-limited oligotrophic lakes switch to P limitation after receiving only modest inputs of reactive N, shifting the controls on diatom species changes along the length of the nitrate gradient. These constraints suggest that quantitative inferences of nitrate from diatom assemblages will likely require experimental approaches.

Colorado, Idaho, Montana, Utah, Wyoming↗

Hydrogeology and water chemistry of Montezuma Well in Montezuma Castle National Monument and surrounding area, Arizona

Increasing population and associated residential and commercial development have greatly increased water use and consumption in the Verde Valley near Montezuma Well, a unit of Montezuma Castle National Monument in central Arizona. Flow from Montezuma Well and water levels in eight wells that are measured annually do not indicate that the ground-water system has been affected by development. Additional data are needed to develop an adequate ground-water monitoring program so that future effects of development can be detected. Monitoring the ground-water system would detect changes in discharge from the Montezuma Well or changes in the ground-water system that might indicate a potential change of flow to the well. Water samples were collected, and field measurements of specific conductance, pH, temperature, and dissolved oxygen were made throughout the pond at Montezuma Well during an exploration in May 1991. The exploration included two fissures in the bottom of the pond that were filled with sand. The sand in the fissures was kept in suspension by water entering the pond. Water chemistry indicates that the ground water from the area is a mixed combination of calcium, magnesium, sodium, and bicarbonate type water. The analyses for 18O/16O and 2H/1H show that the water from the wells and springs in the area, including Montezuma Well, has been exposed to similar environmental conditions and could have had similar flow paths. The MODFLOW finite-difference ground-water model was used to develop an uncalibrated interpretive model to study possible mechanisms for discharge of water at Montezuma Well. The study presents the hypothesis that ground water in the Supai Formation is the source of discharge to Montezuma Well because of the differences between the surface elevation of the pond at Montezuma Well and the stage in the adjacent Wet Beaver Creek. A series of simulations shows that upward flow from the Supai Formation is a possible mechanism for discharge to Montezuma Well, and that a geologic structure in the Supai Formation could play a role in the upward movement of water to Montezuma Well. The mechanism for inflow from the Verde Formation is not understood; however, this study concludes that the Verde Formation, Supai Formation, and other underlying rock units are probably the sources of water to Montezuma Well.

Water-Resources Investigations Report↗

Scoping decision-maker needs and science availability to support regional natural capital accounting in the U.S. Colorado River Basin

Natural capital accounting has the potential to yield important policy insights at multiple scales, but there remains a disconnect between regional-scale natural capital accounts and their use for informing policy. In this paper, we propose a roadmap that could lead to the creation of policy-relevant regional accounts, with steps split across an initial scoping phase and a subsequent development phase. We demonstrate the scoping steps in action with an application to the Colorado River Basin (“Basin”), a large watershed in the southwestern United States (U.S.) that has faced aridification and substantial high-profile tradeoffs around the use of its water and other natural resources. Drawing on prior U.S. Geological Survey science co-production efforts, we conducted a series of eight discussion sessions with 41 scientists and science representatives whose work is relevant to Basin water, riparian and riverine ecosystems, upland ecosystems and energy and minerals. We summarise participants' thoughts on key topics and economic linkages, their insights and questions of interest and their recommendations on existing scientific data sources and gaps. We evaluate the suitability of the available data for construction of System of Environmental-Economic Accounting (SEEA) Central Framework and SEEA Ecosystem Accounting accounts, including those for land, water, forests, energy and minerals and ecosystems (covering extent, condition and ecosystem services). We present a series of lessons learned during the scoping phase, as well as lessons that could be relevant for future practitioners engaging in the development phase. The information can help guide the development of timely and relevant regional-scale environmental-economic accounts in the U.S. and beyond.

Arizona, California, Colorado, Nevada, New Mexico,↗

Statistical analyses to support guidelines for marine avian sampling. Final report

Interest in development of offshore renewable energy facilities has led to a need for high-quality, statistically robust information on marine wildlife distributions. A practical approach is described to estimate the amount of sampling effort required to have sufficient statistical power to identify species-specific “hotspots” and “coldspots” of marine bird abundance and occurrence in an offshore environment divided into discrete spatial units (e.g., lease blocks), where “hotspots” and “coldspots” are defined relative to a reference (e.g., regional) mean abundance and/or occurrence probability for each species of interest. For example, a location with average abundance or occurrence that is three times larger the mean (3x effect size) could be defined as a “hotspot,” and a location that is three times smaller than the mean (1/3x effect size) as a “coldspot.” The choice of the effect size used to define hot and coldspots will generally depend on a combination of ecological and regulatory considerations. A method is also developed for testing the statistical significance of possible hotspots and coldspots. Both methods are illustrated with historical seabird survey data from the USGS Avian Compendium Database. Our approach consists of five main components: 1. A review of the primary scientific literature on statistical modeling of animal group size and avian count data to develop a candidate set of statistical distributions that have been used or may be useful to model seabird counts. 2. Statistical power curves for one-sample, one-tailed Monte Carlo significance tests of differences of observed small-sample means from a specified reference distribution. These curves show the power to detect "hotspots" or "coldspots" of occurrence and abundance at a range of effect sizes, given assumptions which we discuss. 3. A model selection procedure, based on maximum likelihood fits of models in the candidate set, to determine an appropriate statistical distribution to describe counts of a given species in a particular region and season. 4. Using a large database of historical at-sea seabird survey data, we applied this technique to identify appropriate statistical distributions for modeling a variety of species, allowing the distribution to vary by season. For each species and season, we used the selected distribution to calculate and map retrospective statistical power to detect hotspots and coldspots, and map pvalues from Monte Carlo significance tests of hotspots and coldspots, in discrete lease blocks designated by the U.S. Department of Interior, Bureau of Ocean Energy Management (BOEM). 5. Because our definition of hotspots and coldspots does not explicitly include variability over time, we examine the relationship between the temporal scale of sampling and the proportion of variance captured in time series of key environmental correlates of marine bird abundance, as well as available marine bird abundance time series, and use these analyses to develop recommendations for the temporal distribution of sampling to adequately represent both shortterm and long-term variability. We conclude by presenting a schematic “decision tree” showing how this power analysis approach would fit in a general framework for avian survey design, and discuss implications of model assumptions and results. We discuss avenues for future development of this work, and recommendations for practical implementation in the context of siting and wildlife assessment for offshore renewable energy development projects.

NOAA Technical Memorandum↗

Environmental conditions influencing the abundance of the salmonid ectoparasite Salmincola californiensis across upper Willamette River Reservoirs, Oregon

The freshwater copepod Salmincola californiensis is an ectoparasite of Pacific salmon and trout ( Oncorhynchus spp.). High levels of infection by this parasite can significantly damage gills and result in blood loss, affecting the fitness and survival of hosts, and it may hinder recovery efforts of threatened and endangered salmonids. Juvenile salmonids that rear in reservoirs have been reported to experience higher rates of infection than their stream-dwelling counterparts. To date, the relationship between reservoir environmental conditions and infection rates remains poorly understood. Here, we evaluated sampling methods designed to capture S. californiensis copepodids, the free-swimming infectious life stage of this parasitic copepod, and develop predictive models of parasite abundance in reservoirs . We used light traps to collect 675 zooplankton samples from various sites and depths in Cougar, Lookout Point, and Fall Creek reservoirs, Oregon, USA during five months in 2020. We tested several predictive models of parasite abundance using environmental covariates obtained concurrently during plankton surveys ( e.g. , temperature, ambient light and water clarity, reservoir plankton profiles, and water flow). Our models showed a strong influence of water temperature on abundance of copepodids, with maximum initial abundance occurring at the mean water temperature 15.2 °C. At that temperature, August abundance was estimated to be 58.6 copepodids per site in Cougar Reservoir, 43.8 copepodids per site in Fall Creek Reservoir, and 3.5 copepodids per site in Lookout Point Reservoir. Water temperature and reservoir outflow both affected population growth of copepodids: increased water temperature was associated with an increase in population growth rate while an increased reservoir outflow was associated with a decrease in population growth rate. The efficacy of our sampling method was influenced by percent of moon fullness, whether the sample site was above or below the thermocline, water temperature, and number of juvenile sculpin fishes ( Cottus spp.) captured in the trap. The mean probability of detecting a single copepodid if one was present was 0.042, but detection probability increased to 0.29 under ideal trap set conditions of warmer water, location above the thermocline, and a full moon. Biologists and managers could use these methods to assess the presence and abundance of S. californiensis in other locations, or to inform reservoir operations to reduce potential salmonid infections.

Oregon↗

In-flight validation and recovery of water surface temperature with Landsat-5 thermal infrared data using an automated high-altitude lake validation site at Lake Tahoe

The absolute radiometric accuracy of the thermal infrared band (B6) of the Thematic Mapper (TM) instrument on the Landsat-5 (L5) satellite was assessed over a period of approximately four years using data from the Lake Tahoe automated validation site (California-Nevada). The Lake Tahoe site was established in July 1999, and measurements of the skin and bulk temperature have been made approximately every 2 min from four permanently moored buoys since mid-1999. Assessment involved using a radiative transfer model to propagate surface skin temperature measurements made at the time of the L5 overpass to predict the at-sensor radiance. The predicted radiance was then convolved with the L5B6 system response function to obtain the predicted L5B6 radiance, which was then compared with the radiance measured by L5B6. Twenty-four cloud-free scenes acquired between 1999 and 2003 were used in the analysis with scene temperatures ranging between 4/spl deg/C and 22/spl deg/C. The results indicate L5B6 had a radiance bias of 2.5% (1.6/spl deg/C) in late 1999, which gradually decreased to 0.8% (0.5/spl deg/C) in mid-2002. Since that time, the bias has remained positive (predicted minus measured) and between 0.3% (0.2/spl deg/C) and 1.4% (0.9/spl deg/C). The cause for the cold bias (L5 radiances are lower than expected) is unresolved, but likely related to changes in instrument temperature associated with changes in instrument usage. The in situ data were then used to develop algorithms to recover the skin and bulk temperature of the water by regressing the L5B6 radiance and the National Center for Environmental Prediction (NCEP) total column water data to either the skin or bulk temperature. Use of the NCEP data provides an alternative approach to the split-window approach used with instruments that have two thermal infrared bands. The results indicate the surface skin and bulk temperature can be recovered with a standard error of 0.6/spl deg/C. This error is larger than errors obtained with other instruments due, in part, to the calibration bias. L5 provides the only long-duration high spatial resolution thermal infrared measurements of the land surface. If these data are to be used effectively in studies designed to monitor change, it is essential to continue to monitor instrument performance in-flight and develop quantitative algorithms for recovering surface temperature.

IEEE Transactions on Geoscience and Remote Sensing↗

Potential effects of climate change on ground water in Lansing, Michigan

Computer simulations involving general circulation models, a hydrologic modeling system, and a ground water flow model indicate potential impacts of selected climate change projections on ground water levels in the Lansing, Michigan, area. General circulation models developed by the Canadian Climate Centre and the Hadley Centre generated meteorology estimates for 1961 through 1990 (as a reference condition) and for the 20 years centered on 2030 (as a changed climate condition). Using these meteorology estimates, the Great Lakes Environmental Research Laboratory's hydrologic modeling system produced corresponding period streamflow simulations. Ground water recharge was estimated from the streamflow simulations and from variables derived from the general circulation models. The U.S. Geological Survey developed a numerical ground water flow model of the Saginaw and glacial aquifers in the Tri-County region surrounding Lansing, Michigan. Model simulations, using the ground water recharge estimates, indicate changes in ground water levels. Within the Lansing area, simulated ground water levels in the Saginaw aquifer declined under the Canadian predictions and increased under the Hadley.

Michigan↗

Framework for a long-term strategic plan for the Capital Area Groundwater Conservation Commission

The Capital Area Groundwater Conservation Commission oversees the use of groundwater in six parishes in Louisiana. In carrying out its statutory responsibilities and authorities, the Commission recognizes the complexity of its decisions: the long-term objectives it is seeking are multifaceted; the actions it can choose from are numerous and interdependent; and the understanding of the hydrogeological, economic, and social systems affected by its actions is limited. To navigate this complexity, the Commission is developing a long-term strategic plan to guide its activities and to serve as a primary mode of communication to stakeholders and the public. The long-term strategic plan is intended to consider actions and outcomes over at least the next 50 years within the 6 parishes in the Commission’s jurisdiction and related to all the confined aquifers in the 3000 feet below the district. The primary purposes of the plan are to promote long-term sustainability of groundwater extraction, continuity of operations of the Commission, long-term planning by water users, and clear communication with the public. The plan will describe specific management actions to be taken over time by the Commission, and the conditions under which those actions are to be taken. It will include intermediate milestones the Commission intends to achieve on the way toward achieving its long-term objectives. The actions under consideration include regulation and monitoring of groundwater withdrawal, mitigation of the environmental effects of withdrawal, support of relevant scientific studies, as well as work with partner agencies to implement measures to conserve, develop, and supplement groundwater resources. The plan will have greater detail about short-term actions than mid-term and long-term actions, and the Commission anticipates updating the plan periodically to adapt to changing circumstances and knowledge. To develop its long-term strategic plan, the Commission is working with The Water Institute of the Gulf and the U.S. Geological Survey using a facilitated process based on the principles of structured decision making (Gregory et al., 2012). This document outlines the framework for the strategic plan by describing the legal, economic, and scientific context for the plan, the fundamental objectives the Commission seeks to achieve in the long term, and the strategic alternatives it is considering.

Report↗

Differentiating climatic and successional influences on long-term development of a marsh

Comparison of long&mdash;term records of local wetland vegetation dynamics with regional, climate&mdash;forced terrestrial vegetation changes can be used to differentiate the rates and effects of autogenic successional processes and allogenic environmental change on wetland vegetation dynamics. We studied Holocene plant macrofossil and pollen sequences from Portage Marsh, a shallow, 18&mdash;ha marsh in northeastern Indiana. Between 10 000 and 5700 yr BP the basin was occupied by a shallow, open lake, while upland vegetation consisted of mesic forests of Pinus, Quercus, Ulmus, and Carya. At 5700 yr BP the open lake was replaced rapidly by a shallow marsh, while simultaneously Quercus savanna developed on the surrounding uplands. The marsh was characterized by periodic drawdowns, and the uplands by periodic fires. Species composition of the marsh underwent further changes between 3000 and 2000 yr BP. Upland pollen spectra at Portage Marsh and other sites in the region shifted towards more mesic vegetation during that period. The consistency and temporal correspondence between the changes in upland vegetation and marsh vegetation indicate that the major vegetational changes in the marsh during the Holocene resulted from hydrologic changes forced by regional climate change. Progressive shallowing of the basin by autogenic accumulation of organic sediment constrained vegetational responses to climate change but did not serve as the direct mechanism of change.

Ecology↗

Testing ecosystem accounting in the United States: A case study for the Southeast

Ecosystem accounts, as formalized by the System of Environmental-Economic Accounting Experimental Ecosystem Accounts (SEEA EEA), have been compiled in a number of countries, yet there have been few attempts to develop them for the U.S. We explore the potential for U.S. ecosystem accounting by compiling ecosystem extent, condition, and ecosystem services supply and use accounts for a ten-state region in the Southeast. The pilot accounts address air quality, water quality, biodiversity, carbon storage, recreation, and pollination for selected years from 2001 to 2015. Results illustrate how information from ecosystem accounts can contribute to policy and decision-making. Using an example from Atlanta, we also show how ecosystem accounts can be considered alongside other SEEA accounts to give a more complete picture of a local area’s environmental-economic trends. The process by which we determined where to place metrics within the accounting framework, which was strongly informed by the National Ecosystem Services Classification System (NESCS), can provide guidance for future ecosystem accounts in the U.S. and other countries. Finally, we identify knowledge gaps that limit the inclusion of certain ecosystem services in the accounts and suggest future research that can close these gaps and improve future U.S. ecosystem accounts.

Missouri, Arkansas, Louisiana, Tennessee, Mississi↗