USGS Science⌕ Search

SEARCH · USGS Science

Results for “Research Paper”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,513 records · Page 84Linked to original sources

Hot spots on Io: Initial results from Galileo's near infrared mapping spectrometer

The Near-Infrared Mapping Spectrometer on Galileo has monitored the volcanic activity on Io since June 28, 1996. This paper presents preliminary analysis of NIMS thermal data for the first four orbits of the Galileo mission. NIMS has detected 18 new hot spots and 12 others which were previously known to be active. The distribution of the hot spots on Io's surface may not be random, as hot spots surround the two bright, SO 2 -rich regions of Bosphorus Regio and Colchis Regio. Most hot spots seem to be persistently active from orbit to orbit and 10 of those detected were active in 1979 during the Voyager encounters. We report the distribution of hot spot temperatures and find that they are consistent with silicate volcanism.

Geophysical Research Letters↗

Unusual downhole and surface free-field records near the Carquinez Strait bridges during the 24 August 2014 Mw6.0 South Napa, California earthquake

This paper reports the results of Part A of a study of the recorded strong-motion accelerations at the well-instrumented network of the two side-by-side parallel bridges over the Carquinez Strait during the 24 August 2014 (Mw6.0 ) South Napa, Calif. earthquake that occurred at 03:20:44 PDT with epicentral coordinates 38.22N, 122.31W. (http://earthquake.usgs.gov/earthquakes/eqarchives/poster/2014/20140824.php, last accessed on October 17, 2014). Both bridges and two boreholes were instrumented by the California Strong motion Instrumentation Program (CSMIP) of California Geological Survey (CGS) (Shakal et al., 2014). A comprehensive comparison of several ground motion prediction equations as they relate to recorded ground motions of the earthquake is provided by Baltay and Boatright (2015).

California↗

Pleistocene plants from North Carolina

The field work upon which this report is based was done in 1906 and 1907 as a part of the cooperative study of the Atlantic Coastal Plain, under the direction of the late William Bullock Clark. Associated with the writer in this work were L. W. Stephenson, B. L. Miller, Jr., and J. E. Pogue. Preliminary accounts of the plants collected were published in 1907 and 1909. As has been frequently emphasized, the study of the Pleistocene floras in this country is in an exceedingly backward state as measured by the volume and precision of our knowledge of Pleistocene floras in Europe. Researches in Pleistocene geology in North America have been confined almost entirely to glaciology, and the problem of the correlation of the glacial deposits with those outside the glaciated area has not been solved, nor is there any general agreement regarding the genesis of the Pleistocene deposits south of the terminal moraines. The present account of what is known of the Pleistocene flora of North Carolina and the conclusions that may be legitimately derived from it is offered in the hope that it may stimulate an interest in a neglected field of research and form a small part of the evidence upon which to base future more comprehensive conclusions and generalizations. A word of explanation regarding the illustrations is required. Nearly all of them have been made from leaves preserved as carbonaceous films in the peaty clays. These specimens were carefully washed out, and blue prints were made directly from them. Outlines and as much of the venation as could be seen were inked on the blue prints, which were then bleached. This procedure made it possible to handle a much larger amount of material and prevented any possible damage to the exceedingly fragile specimens, which were mounted on cards or between glass. The accompanying drawings were made from tracings of the original nature prints.

North Carolina↗

Joint system-input identification of bridge structures

This paper presents a novel framework for system identification of bridge structures using recorded earthquake data. Bridge structures are prone to spatial variability of ground motions because they extend over relatively long distances. So, input motion measurement is a challenging task, especially for long bridges with multiple piers. Moreover, direct measurement of the bridge Foundation Input Motions (FIMs) may not be possible due to both inertial and kinematic Soil-Structure Interaction (SSI) effects. In this study, we propose a joint system-input identification solution using sparsely measured earthquake-induced responses. We verify this method and its applicability for real scale problems using simulated data obtained from the Golden Gate Bridge.

California↗

Distribution of invasive ants and methods for their control in Hawai'i Volcanoes National Park

The first invasive ants were detected in Hawai`i Volcanoes National Park (HAVO) more than 80 years ago. Ecological impacts of these ants are largely unknown, but studies in Hawai`i and elsewhere increasingly show that invasive ants can reduce abundance and diversity of native arthropod communities as well as disrupt pollination and food webs. Prior to the present study, knowledge of ant distributions in HAVO has primarily been restricted to road- and trail-side surveys of the Kīlauea and Mauna Loa Strip sections of the park. Due to the risks that ants pose to HAVO resources, understanding their distributions and identifying tools to eradicate or control populations of the most aggressive species is an important objective of park managers. We mapped ant distributions in two of the most intensively managed sections of the park, Mauna Loa Strip and Kahuku. We also tested the efficacy of baits to control the Argentine ant ( Linepithema humile ) and the big-headed ant ( Pheidole megacephala ), two of the most aggressive and ecologically destructive species in Hawai`i. Efficacy testing of formicidal bait was designed to provide park managers with options for eradicating small populations or controlling populations that occur at levels beyond which they can be eradicated. Within the Mauna Loa Strip and Kahuku sections of HAVO we conducted systematic surveys of ant distributions at 1625 stations covering nearly 200 km of roads, fences, and transects between August 2008 and April 2010. Overall, 15 ant species were collected in the two areas, with 12 being found on Mauna Loa Strip and 11 at Kahuku. Cardiocondyla kagutsuchi was most widespread at both sites, ranging in elevation from 920 to 2014 m, and was the only species found above 1530 m. Argentine ants and big-headed ants were also found in both areas, but their distributions did not overlap. Surveys of Argentine ants identified areas of infestation covering 560 ha at Mauna Loa Strip and 585 ha at Kahuku. At both sites, upper boundaries of big-headed ants coincided with lower boundaries of Argentine ants. Significantly, Wasmannia auropunctata (little fire ant) was not detected during our surveys. Formicidal baits tested for controlling Argentine ants included Xstinguish TM (containing fipronil at 0.01%), Maxforce ® (hydramethylnon 1.0%), and Australian Distance ® (pyriproxyfen 0.5%). Each bait was distributed evenly over four 2500 m 2 replicate plots. Applications were repeated approximately four weeks after the initial treatment. Plots were subdivided into 25 subplots and ants monitored within each subplot using paper cards containing tuna bait at approximately one week intervals for about 14 weeks. All treatments reduced ant numbers, but none eradicated ants on any of the plots. Xstinguish TM produced a strong and lasting effect, depressing ant abundance below 1% of control plot levels within the first week and for about eight weeks afterward. Maxforce ® was slower to attain maximum effectiveness, reducing ants to 8% of control levels after one week and 3% after six weeks. Australian Distance ® was least effective, decreasing ant abundance to 19% of control levels after one week with numbers subsequently rebounding to 40% of controls at four weeks and 72% at 10 weeks. In measurements of the proportion of bait cards at which ants were detected, Xstinguish TM clearly out-performed Maxforce ® , reaching a minimum detection rate of 3% of bait cards at one week compared to a low of 19% for Maxforce ® two weeks following the second treatment. Although ant abundances were dramatically reduced on Xstinguish TM plots, it is not currently registered for use in the USA. Our results suggest that ant abundance can be greatly reduced using registered baits, but further research is needed before even small-scale eradication of Argentine ants can be achieved. Formicidal baits tested to control big-headed ants included Amdro ® (hydramethylnon 0.75%), Xstinguish TM (fipronil 0.01%), Extinguish ® Plus (a blend of hydramethylnon 0.365% and S- methoprene 0.25%), and Australian Distance ® Plus (hydramethylnon 0.365% and pyriproxyfen 0.25%). Application methods were the same as used for Argentine ants, with baits being applied on two occasions (approximately four weeks apart) on four 2500 m 2 replicate plots. All four baits reduced populations to below 2% of control plot levels within one week of treatment. Amdro ® was particularly effective as no ants were detected on two of the four Amdro ® plots immediately following treatment. Suppression was long-lived in three of the treatments; Amdro ® , Australian Distance ® Plus, and Extinguish ® Plus all maintained ant abundances at levels less than 1% of control plots over 12 weeks of study. In contrast, ant abundances in Xstinguish TM plots rose to 7% of control plots after four weeks and 20% after 10 weeks. Our results corroborate other recent studies indicating that small populations of big-headed ants can be controlled in natural areas using products registered in the USA.

Hawaii↗

Fluorine

Fluorine compounds are essential in numerous chemical and manufacturing processes. Fluorspar is the commercial name for fluorite (isometric CaF 2 ), which is the only fluorine mineral that is mined on a large scale. Fluorspar is used directly as a fluxing material and as an additive in different manufacturing processes. It is the source of fluorine in the production of hydrogen fluoride or hydrofluoric acid, which is used as the feedstock for numerous organic and inorganic chemical compounds. The United States was the world’s leading producer of fluorspar until the mid-1950s. In the mid-1970s, the U.S. fluorspar mining industry began to decline because of foreign competition. By 1982, there was essentially only a single U.S. producer left, and that company ceased mining in 1996. Consumption of fluorspar in the United States peaked in the early 1970s, which was also the peak period of U.S. steel production. Since then, U.S. fluorspar consumption has decreased substantially; the United States has nonetheless increased its imports of downstream fluorine compounds, such as, in order of tonnage imported, hydrofluoric acid, aluminum fluoride, and cryolite. This combination of no U.S. production (until recently) and high levels of consumption has made the United States the world’s leading fluorspar-importing country, in all its various forms. The number of fluorspar-exporting countries has decreased substantially in recent decades, and, as a result, the United States has become dependent on just a few countries to supply its needs. In 2013, the United States imported the majority of its fluorspar from three countries, which were, in descending order of the amount imported, Mexico, China, and South Africa. Geologically, in igneous systems, fluorine is one of a number of elements that are “incompatible.” These incompatible elements become concentrated in the residual magma while the common silicates crystallize upon magma ascent and cooling, leading to relatively high fluorine concentrations in the more evolved or differentiated igneous rocks and in hydrothermal deposits associated with those evolved igneous rocks. In sedimentary rocks, fluorine’s highest concentrations are found in phosphorites because fluorine substitutes for hydroxyl ions in apatite, which leads to fluorine concentrations of, typically, from 2 to 4 weight percent in phosphorites. Because of the presence of fluorine, phosphate fertilizer manufacturers can produce a fluorosilicic acid byproduct. Most deposits mined for fluorine are hydrothermal, however, and consist of fluorine minerals that precipitated from hot water. Magmatic brines and brines from deep within sedimentary basins that have high concentrations of dissolved fluoride are the mineralizing fluids for various types of hydrothermal fluorspar deposits. Relatively dilute hydrothermal fluids that formed in some volcanic rocks can also transport sufficient fluoride to form a high-grade fluorspar deposit. Fluorite has low solubility in a common range of hydrothermal temperatures, particularly from about 160 degrees Celsius (°C) down to 60 °C. The increasing fluorite solubility below 60 °C partly explains why some water with exceptionally high levels of dissolved fluorine are found even at ambient temperatures in evaporitic lake basins in some East African Rift valleys in Kenya and Tanzania. The geologic conditions that led to the high concentrations there are known to exist in a number of other places in the world as well, including, perhaps, places in the Basin and Range province of the United States. Eight minerals or mineral groups have sufficient fluorine in their structures to be considered as possible ores of the element; they are bastnaesite (also spelled bastnäsite; and other fluorocarbonates), cryolite, sellaite, villiaumite, fluorite, fluorapatite (in phosphorites), various phyllosilicates, and topaz. Fluorite is currently the only mineral that is mined for fluorine, and nomineral except fluorite is likely to become a source of commercially produced fluorine as a primary product as long as supplies from relatively thick and high-grade fluorite deposits continue to be available. At least seven classes (which include one subclass) of hydrothermal fluorite deposits are recognized; they are classified according to their tectonic and (or) magmatic settings, as follows: (1) carbonatite-related fluorspar deposits; (2) alkaline-intrusion-related fluorspar deposits; (3) alkaline-volcanic-related epithermal fluorspar deposits; (4) Mississippi Valley-type fluorspar deposits (and a subclass of salt-related carbonate-hosted fluorspar deposits); (5) fluorspar deposits related to strongly differentiated granites; (6) subalkaline-volcanic-related epithermal fluospar deposits; and (7) fluorspar deposits that appear to be conformable within tuffaceous limy lacustrine sediments. An eighth class (not hydrothermal) is that of fluorspar deposits concentrated in soils and weathered zones; that is, residual fluorspar deposits. Generally, fluorspar deposits related to strongly differentiated granites have larger tonnages and lower grades than carbonatite-related fluorspar deposits, which, in turn, have larger tonnages and lower grades than fluorspar vein deposits from various other classes. The United States has a few identified resources of fluorspar, most notably the Klondike II property in the Illinois- Kentucky fluorspar district located about 8 kilometers southwest of Salem, Kentucky, which has a large vein that contains at least 1.6 million metric tons at a grade of 60 percent CaF 2 (Feytis, 2009). Additional fluorspar resources of lower grade but larger tonnage have been identified at Hicks Dome in the Illinois-Kentucky fluorspar district and at Lost River near the western tip of the Seward Peninsula in Alaska, along with a couple of dozen smaller, higher grade resources. Internationally, new mines that either opened before the beginning of 2013 or were scheduled to open soon after that time include the Nui Phao tungsten-fluorspar-bismuth-copper-gold deposit in northern Vietnam; the St. Lawrence project in Newfoundland, Canada, which is located in a well-known fluorspar district; the Bamianshan deposit, which is related to a strongly differentiated granite in northwestern Zhejiang Province, China, near some of that Province’s large, subalkaline-volcanic-related epithermal veins; and the Nokeng project in South Africa, which is also related to a strongly differentiated granite. Other deposits in northwestern Australia, Nevada (United States), Norway, South Africa, and Sweden have been identified and could be put into production within just a few years. Among undiscovered resources, an interesting possibility might be to produce a fluorine product from evaporitic, high-fluorine, high-pH sodium-carbonate brines like Lake Magadi (Kenya) and Lake Natron (Tanzania) in Africa’s Eastern Rift Valley. In addition, apparently conformable fluorspar deposits in tuffaceous limy lacustrine sediments, such as those in Italy, are likely to occur in similar young alkalic volcanic settings elsewhere in the world. Modern geophysical and geochemical exploration techniques have typically not been brought to bear in exploration for new fluorspar deposits, although such techniques are likely to be used in future exploration. The tendency for fluorine to dissolve in significant concentrations in water at low temperature allows both surface water and groundwater to be used as sampling media in geochemical exploration. Evolved granite-related fluorspar deposits may be particularly susceptible to geophysical exploration methods because crystalline rocks that form a basement to sedimentary sections can be approximately defined with gravity and magnetic methods, and magnetite-bearing skarns can be directly detected with magnetic surveys. Environmental considerations of fluorine mining focus especially on drinking water, where high fluorine concentrations can lead to tooth decay; dental and skeletal fluorosis; and bone and cartilage conditions, including genu valgum, which is the crippling bone deformity more commonly known as knock knee. Trace amounts of other elements in fluorspar ores are a concern at some deposits; for example, high beryllium concentrations in alkaline-volcanic-related epithermal deposits or high cadmium concentrations associated with Mississippi Valley-type and salt-related carbonate-hosted fluorspar deposits. Future research might include testing whether fluorine can be extracted economically from high-pH, sodium-carbonate brines and exploring for new occurrences of apparently conformable fluorspar deposits in tuffaceous limy lacustrine sediments outside of the Latium Region of Italy. Other promising new areas of research could be studies of fluorspar deposit fluid inclusion compositions by quadrupole mass spectrometry, by noble gas mass spectrometry on irradiated fluid inclusions, or by chlorine isotopes, while also measuring the chemistry of the same fluid inclusions either by bulk crush-and-leach methods or by laser ablation-inductively coupled plasma mass spectrometry. Advanced studies of fluid inclusion chemistry could be applied beneficially to some of the enigmatic large epithermal fluorspar veins at various places in the world, where they might determine those deposits’ possible relationships to igneous intrusions, or to dissolved salt, or to heated meteoric water in volcanic sections, or perhaps to all three. This knowledge could help focus new exploration.

Professional Paper↗

Revisiting the Apollo photogrammetric mapping system

The integrated photogrammetric mapping system flown on the last three Apollo lunar missions (15, 16, and 17) in 1971 and 1972 incorporated a Metric (mapping) Camera, a high-resolution Panoramic Camera, and a star camera and laser altimeter to provide support data. The U.S. Geological Survey’s Astrogeology Science Center, the Intelligent Robotics Group of the NASA Ames Research Center, and Arizona State University are working together in an ongoing collaboration to achieve the most complete cartographic development of Apollo mapping system data into versatile digital map products. These will enable a variety of scientific/engineering uses of the data including mission planning, geologic mapping, geophysical process modelling, slope dependent correction of spectral data, and change detection. After a brief discussion of the origins of the mapping system, we describe the Metric and Panoramic cameras, processing of the associated image and support data, work to photogrammetrically control the Metric Camera images, and future plans.

Conference Paper↗

Taming a wild geothermal research well in yellowstone national park

In November 1992 the valve at the top of a U.S. Geological Survey drill hole in Yellowstone National Park parted from the casting as a result of corrosion. This allowed uncontrolled venting of boiling water and steam from the well at an estimated liquid flow rate of about 25-50 gallons per minute. A flow diverter assembly was designed, fabricated and installed on the well within 16 days, which allowed drill rods to be safely stripped into the well through on annular Blow-Out Preventer. Once this was accomplished it was a relatively routine matter to set a packer in the casting and cement the well shut permanently. The drill hole was brought under control and cemented shut within 18 days of the wellhead failure at a total cost of $47,066, which was about $5,000 less than anticipated.

Conference Paper↗

Preliminary assessment of DOC and THM precursor loads from a freshwater restored wetland, an agricultural field, and a tidal wetland in the Sacramento-San Joaquin River Delta

Water exported from the Sacramento-San Joaquin River Delta supplies drinking water to more than 22 million people in California. At certain times of the year, Delta waters contain relatively high concentrations of dissolved organic carbon (DOC) and bromide. During these times, chlorination of Delta water for drinking water disinfection will form disinfection byproducts, such as trihalomethanes (THMs), that can exceed the U.S. Environmental Protection Agency's maximum contaminant level for THMs of 80 mg/L. Important sources of DOC and THM precursors (types of DOC that form THMs when chlorinated) to the Delta include rivers, drainage water from peat islands, water from wetlands and areas with extensive riparian vegetation, and in-channel growth of algae and macrophytes. Due to proposed ecosystem restoration and creation of wetlands in the Delta, there is an urgent need for information on the relative loads of DOC and THM precursors produced from three different land uses: restored wetlands constructed for subsidence mitigation, tidal wetlands, and agricultural operations. We have been conducting research in the Delta to provide this information. A restored wetland and agricultural field located on Twitchell Island, and a tidal wetland on Browns Island have been monitored for flow, DOC, and THM precursors. Initial results indicate that the loads of DOC and THM precursors are similar for the restored wetland (surface water only) and the agricultural field. These land uses produce DOC loads of about 14 and 11 g C/m2/yr, respectively, and THM precursor loads of about 1.7 and 1.0 g THM/m2/yr, respectively. Estimates of DOC and THM precursor loads for the tidal wetland site on Browns Island and seepage associated with the restored wetland are being developed.

Conference Paper↗

Improving data analysis in herpetology: Using Akaike's information criterion (AIC) to assess the strength of biological hypotheses

In ecology, researchers frequently use observational studies to explain a given pattern, such as the number of individuals in a habitat patch, with a large number of explanatory (i.e., independent) variables. To elucidate such relationships, ecologists have long relied on hypothesis testing to include or exclude variables in regression models, although the conclusions often depend on the approach used (e.g., forward, backward, stepwise selection). Though better tools have surfaced in the mid 1970's, they are still underutilized in certain fields, particularly in herpetology. This is the case of the Akaike information criterion (AIC) which is remarkably superior in model selection (i.e., variable selection) than hypothesis-based approaches. It is simple to compute and easy to understand, but more importantly, for a given data set, it provides a measure of the strength of evidence for each model that represents a plausible biological hypothesis relative to the entire set of models considered. Using this approach, one can then compute a weighted average of the estimate and standard error for any given variable of interest across all the models considered. This procedure, termed model-averaging or multimodel inference, yields precise and robust estimates. In this paper, I illustrate the use of the AIC in model selection and inference, as well as the interpretation of results analysed in this framework with two real herpetological data sets. The AIC and measures derived from it is should be routinely adopted by herpetologists. ?? Koninklijke Brill NV 2006.

Amphibia-Reptilia↗

Effects of antenna length and material on output power and detection of miniature radio transmitters

The optimal antenna of transmitters used in small aquatic animals is often a compromise between efficient radio wave propagation and effects on animal behavior. Radio transmission efficiency generally increases with diameter and length of the conductor, but increased antenna length or weight can adversely affect animal behavior. We evaluated the effects of changing antenna length and material on the subsequent tag output power, reception, and detection of tagged fish. In a laboratory, we compared the relative signal strengths in water of 150 MHz transmitters over a range of antenna lengths (from 6 to 30 cm) and materials (one weighing about half of the other). The peak relative signal strengths were at 20 and 22 cm, which are approximately one wavelength underwater at the test frequency. The peak relative signal strengths at these lengths were approximately 50% greater than those of 30 cm antennas, a length commonly used in fisheries research. Few significant differences were present in distances for the operator to hear or the telemetry receiver to decode transmitters from a boat-mounted receiving system based on antenna length, but the percent of tagged fish detected passing a hydroelectric dam fitted with an array of receiving systems was significantly greater at the antenna length with peak output power in laboratory tests. This study indicates careful choice of antenna length and material of small transmitters can be used to reduce weight and possible antenna effects on animal behavior, to maximize tag output power and detection, or to balance these factors based on the needs of the application. ?? 2007 Springer Science+Business Media B.V.

Conference Paper↗

WHE-PAGER Project: A new initiative in estimating global building inventory and its seismic vulnerability

The U.S. Geological Survey’s Prompt Assessment of Global Earthquake’s Response (PAGER) Project and the Earthquake Engineering Research Institute’s World Housing Encyclopedia (WHE) are creating a global database of building stocks and their earthquake vulnerability. The WHE already represents a growing, community-developed public database of global housing and its detailed structural characteristics. It currently contains more than 135 reports on particular housing types in 40 countries. The WHE-PAGER effort extends the WHE in several ways: (1) by addressing non-residential construction; (2) by quantifying the prevalence of each building type in both rural and urban areas; (3) by addressing day and night occupancy patterns, (4) by adding quantitative vulnerability estimates from judgment or statistical observation; and (5) by analytically deriving alternative vulnerability estimates using in part laboratory testing.

Conference Paper↗

Resource-driven pattern formation in consumer-resource systems with asymmetric dispersal on a plane

This paper considers resource-driven pattern formation in consumer-resource systems. Here, a planar pattern consists of many big patches, and a big patch can be regarded as combination of many patches on the plane. The consumer moves between patches asymmetrically, while the asymmetry is driven by the resource abundance. Based on experimental models with linearly-linked patches, we propose a planarly-linked-patch model with asymmetric dispersal. Using dynamical systems theory, we show global stability of equilibria in the model, and demonstrate how the resource-driven dispersal forms patterns. It is shown that appropriate asymmetry in dispersal would make the consumer persist in the system, even in sink patches. The asymmetry could also make the consumer’s total population abundance larger than that without dispersal. However, inappropriate asymmetry would make the consumer go into extinction, even in source patches. Dispersal rates are also shown to play a role in the persistence and abundance increase. Our results are consistent with experimental observations and provide new insights. Numerical simulations by the model reproduce various vegetation patterns in the real world. This work has potential applications in spatial pattern formation in biological research.

SIAM Journal on Applied Mathematics↗

A video surveillance system to monitor breeding colonies of common terns (Sterna Hirundo)

Many waterbird populations have faced declines over the last century, including the common tern ( Sterna hirundo ), a waterbird species with a widespread breeding distribution, that has been recently listed as endangered in some habitats of its range. Waterbird monitoring programs exist to track populations through time; however, some of the more intensive approaches require entering colonies and can be disruptive to nesting populations. This paper describes a protocol that utilizes a minimally invasive surveillance system to continuously monitor common tern nesting behavior in typical ground-nesting colonies. The video monitoring system utilizes wireless cameras focused on individual nests as well as over the colony as a whole, and allows for observation without entering the colony. The video system is powered with several 12 V car batteries that are continuously recharged using solar panels. Footage is recorded using a digital video recorder (DVR) connected to a hard drive, which can be replaced when full. The DVR may be placed outside of the colony to reduce disturbance. In this study, 3,624 h of footage recorded over 63 days in weather conditions ranging from 12.8 °C to 35.0 °C produced 3,006 h (83%) of usable behavioral data. The types of data retrieved from the recorded video can vary; we used it to detect external disturbances and measure nesting behavior during incubation. Although the protocol detailed here was designed for ground-nesting waterbirds, the principal system could easily be modified to accommodate alternative scenarios, such as colonial arboreal nesting species, making it widely applicable to a variety of research needs.

Journal of Visualized Experiments↗

The Toolbox for River Velocimetry using Images from Aircraft (TRiVIA)

Accurate knowledge of the speed at which water moves along a river is essential for understanding ecohydraulic processes and managing natural resources. Measuring flow velocity via remote sensing can be more efficient than conventional field methods, and powerful computational techniques for inferring velocity fields from videos or image time series have been developed. The development of dedicated software tools for particle image velocimetry (PIV) could facilitate greater use of these methods by the river community. This paper introduces a standalone app designed for this exact purpose: the Toolbox for River Velocimetry using Images from Aircraft, or TRiVIA. The program provides a complete workflow for producing spatially distributed velocity vectors from a video or sequence of images, all within an accessible graphical user interface. TRiVIA includes modules for extracting and resampling frames, stabilization and geo-referencing images, defining a region of interest, enhancing images, performing PIV with an efficient ensemble correlation algorithm, visualizing results, assessing accuracy assessment, and exporting PIV output. We illustrate the software's capabilities using an example data set from a large river in Alaska. The initial release of the toolbox is now freely available. Augmenting TRiVIA to incorporate bathymetric information could enable discharge calculation functionality.

River Research and Applications↗

Material flow analysis for an industry - A case study in packaging

The basic materials used in packaging are glass, metals (primarily aluminum and steel), an ever-growing range of plastics, paper and paperboard, wood, textiles for bags, and miscellaneous other materials (such as glues, inks, and other supplies). They are fabricated into rigid, semirigid, or flexible containers. The most common forms of these containers include cans, drums, bottles, cartons, boxes, bags, pouches, and wraps. Packaging products are, for the most part, low cost, bulky products that are manufactured close to their customers. There is virtually no import or export of packaging products. A material flow analysis can be developed that looks at all inputs to an industrial sector, inventories the losses in processing, and tracks the fate of the material after its useful life. An example is presented that identifies the material inputs to the packaging industry, and addresses the ultimate fate of the materials used.

Natural Resources Research↗

Faunal impact on vegetation structure and ecosystem function in mangrove forests: A review

The last 20 years witnessed a real paradigm shift concerning the impact of biotic factors on ecosystem functions as well as on vegetation structure of mangrove forests. Before this small scientific revolution took place, structural aspects of mangrove forests were viewed to be the result of abiotic processes acting from the bottom-up, while, at ecosystem level, the outwelling hypothesis stated that mangroves primary production was removed via tidal action and carried to adjacent nearshore ecosystems where it fuelled detrital based food-webs. The sesarmid crabs were the first macrofaunal taxon to be considered a main actor in mangrove structuring processes, thanks to a number of studies carried out in the Indo-Pacific forests in the late 1970s and early 1980s. Following these classical papers, a number of studies on Sesarmidae feeding and burrowing ecology were carried out, which leave no doubts about the great importance of these herbivorous crabs in structuring and functioning Old world ecosystems. Although Sesarmidae are still considered very important in shaping mangrove structure and functioning, recent literature emphasizes the significance of other invertebrates. The Ocypodidae have now been shown to have the same role as Sesarmidae in terms of retention of forest products and organic matter processing in New world mangroves. In both New and Old world mangroves, crabs process large amounts of algal primary production, contribute consistently to retention of mangrove production and as ecosystem engineers, change particle size distribution and enhance soil aeration. Our understanding of the strong impact of gastropods, by means of high intake rates of mangrove products and differential consumption of propagules, has changed only recently. The role of insects must also be stressed. It is now clear that older techniques used to assess herbivory rates by insects strongly underestimate their impact, both in case of leaf eating and wood boring species and that herbivorous insects can potentially play a strong role in many aspects of mangrove ecology. Moreover, researchers only recently realized that ant–plant interactions may form an important contribution to our understanding of insect–plant dynamics in these habitats. Ants seem to be able to relieve mangroves from important herbivores such as many insects and sesarmid crabs. It thus seems likely that ants have positive effects on mangrove performance.

Aquatic Botany↗

Development of a coupled wave-flow-vegetation interaction model

Emergent and submerged vegetation can significantly affect coastal hydrodynamics. However, most deterministic numerical models do not take into account their influence on currents, waves, and turbulence. In this paper, we describe the implementation of a wave-flow-vegetation module into a Coupled-Ocean-Atmosphere-Wave-Sediment Transport (COAWST) modeling system that includes a flow model (ROMS) and a wave model (SWAN), and illustrate various interacting processes using an idealized shallow basin application. The flow model has been modified to include plant posture-dependent three-dimensional drag, in-canopy wave-induced streaming, and production of turbulent kinetic energy and enstrophy to parameterize vertical mixing. The coupling framework has been updated to exchange vegetation-related variables between the flow model and the wave model to account for wave energy dissipation due to vegetation. This study i) demonstrates the validity of the plant posture-dependent drag parameterization against field measurements, ii) shows that the model is capable of reproducing the mean and turbulent flow field in the presence of vegetation as compared to various laboratory experiments, iii) provides insight into the flow-vegetation interaction through an analysis of the terms in the momentum balance, iv) describes the influence of a submerged vegetation patch on tidal currents and waves separately and combined, and v) proposes future directions for research and development.

Computers & Geosciences↗