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USGS2023

Linking ecosystem processes to consumer growth rates: Gross primary productivity as a driver of freshwater fish somatic growth in a resource-limited river

Individual growth can exert strong controls on population dynamics and be constrained by resource acquisition rates. Difficulty in accurately quantifying resource availability over large spatial extents and at high temporal frequency often limits attempts to understand the extent that resources limit individual growth. Daily estimates of stream metabolism, including gross primary productivity (GPP), are increasingly available but have not, to our knowledge, been linked to fish growth. Here we examine how GPP, water temperature, high flow and turbidity are linked to spatiotemporal variation in growth of flannelmouth sucker (Catostomus latipinnis). We fit state space growth models to six years of mark-recapture data collected in four river reaches spanning 300 river kilometers. Consistent with past research in this system, we find that water temperature is the dominant driver of spatiotemporal variation in growth. However, we also find that GPP is strongly linked to fish growth. Fish growth is likely to be linked to stream metabolism in other systems where overall productivity, not the quality of primary producers, limits the food webs that support fish growth.

Arizona↗

USGS2023

Climate vulnerability for a desert fish: Integrating hydrologic exposures, adaptive capacity, and growth potential

Climate vulnerability can be evaluated by multiple organismal responses. We developed a climate vulnerability framework focused on growth potential of redband trout (Oncorhynchus mykiss newberri). We employed a bioenergetics model to evaluate spatial variability in growth potential in relation to constraints on body size imposed by stream flow, physiological responses linked to variable thermal regimes, and variation in physiological adaptive capacity inferred from field respirometry. Results indicate that maximum size (g) of redband trout increases with stream discharge. Growth potential is strongly linked to body size, with smaller individuals performing better relative to larger fish in cooler thermal regimes. Annual patterns of growth varied among sites and were related to body size and physiological adaptive capacity. Putatively cold-adapted fish were more likely to exhibit bimodal growth with peaks in spring and autumn, whereas warm-adapted fish exhibit a summer peak in growth potential. These findings offer insights into how climate vulnerability of stream-living fish can be conditioned on both stream flow and thermal regimes, and the potential for physiological adaptive capacity to influence vulnerability.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2023

Persistence of native riverine fishes downstream from two hydropower dams with contrasting operations

Identifying hydropower dam operations that lessen detrimental effects on downstream fauna could inform conservation strategies for native fishes. We compared occurrence of native fishes in 20 shoal habitats downstream from two differently operated hydropower dams in the Coosa River system, Georgia, USA. Species richness averaged 7 and 11, respectively, in surveys downstream from (1) a hydropeaking dam and (2) a dam with a re-regulation structure that stabilized downstream flows. In contrast, surveys in two nearby reference communities averaged 19 and 24 species. Species persisting downstream from the dams tended toward water-column orientation, larger body size, longer life-span, and greater prevalence in tributary stream collections, compared with missing or rarely captured species. We observed no evidence of recovery toward reference conditions when operations were paused for 28 months at the hydropeaking dam. Our observations suggest that (1) strongly contrasting dam operations can result in similar alterations to native fish assemblages, potentially reflecting effects of thermal alteration by hypolimnetic water release, and (2) periodic dispersal from tributary streams may enhance fish persistence in flow-altered rivers.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2016

The social, economic, and environmental importance of inland fish and fisheries

Though reported capture fisheries are dominated by marine production, inland fish and fisheries make substantial contributions to meeting the challenges faced by individuals, society, and the environment in a changing global landscape. Inland capture fisheries and aquaculture contribute over 40% to the world’s reported finfish production from less than 0.01% of the total volume of water on earth. These fisheries provide food for billions and livelihoods for millions of people worldwide. Herein, using supporting evidence from the literature, we review 10 reasons why inland fish and fisheries are important to the individual (food security, economic security, empowerment), to society (cultural services, recreational services, human health and well-being, knowledge transfer and capacity building), and to the environment (ecosystem function and biodiversity, as aquatic “canaries”, the “green food” movement). However, the current limitations to valuing the services provided by inland fish and fisheries make comparison with other water resource users extremely difficult. This list can serve to demonstrate the importance of inland fish and fisheries, a necessary first step to better incorporating them into agriculture, land-use, and water resource planning, where they are currently often underappreciated or ignored.

Environmental Reviews↗

USGS2004

Swimming performance of upstream migrant fishes in open-channel flow: A new approach to predicting passage through velocity barriers

The ability to traverse barriers of high-velocity flow limits the distributions of many diadromous and other migratory fish species, yet very few data exist that quantify this ability. We provide a detailed analysis of sprint swimming ability of six migratory fish species (American shad (Alosa sapidissima), alewife (Alosa pseudoharengus), blueback herring (Alosa aestivalis), striped bass (Morone saxatilis), walleye (Stizostedion vitreum), and white sucker (Catostomus commersoni)) against controlled water velocities of 1.5-4.5 m??s-1 in a large, open-channel flume. Performance was strictly voluntary: no coercive incentives were used to motivate fish to sprint. We used these data to generate models of maximum distance traversed, taking into account effects of flow velocity, body length, and temperature. Although the maximum distance traversed decreased with increasing velocity, the magnitude of this effect varied among species. Other covariate effects were likewise variable, with divergent effects of temperature and nonuniform length effects. These effects do not account for all of the variability in performance, however, and behavioral traits may account for observed interspecific differences. We propose the models be used to develop criteria for fish passage structures, culverts, and breached dams.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2004

Ecological correlates of fish movement in a network of Virginia streams

Identifying factors that influence fish movement is a key step in predicting how populations respond to environmental change. Using mark-recapture (four species) and trap capture (eight species) data, we examined relationships between three attributes of movement and 15 ecological variables. The probability of emigrating from a reach was positively related to intermittency (one species) and body size (one species) and negatively related to distance from the mainstem creek (two species) and habitat complexity (one species). The number of fish moving upstream through traps was positively related to increases in flow (five species), day length (three species), and water temperature (two species); the number moving through downstream traps was positively associated with increases in flow (three species). Distance moved was greater for fish moving through unsuitable reaches (one species). Floods have a pervasive effect on fish movement, and human activities that affect flows will have widespread implications. The importance of other factors varies interspecifically, which may translate into variation in persistence and colonization rates. For example, species that exhibit reach fidelity in complex habitats may increase movement if habitats are homogenized. These species may suffer population declines because of the cost of increased movement and may ultimately be replaced by ecological generalists.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2005

Life history trade-offs and community dynamics of small fishes in a seasonally pulsed wetland

We used a one-dimensional, spatially explicit model to simulate the community of small fishes in the freshwater wetlands of southern Florida, USA. The seasonality of rainfall in these wetlands causes annual fluctuations in the amount of flooded area. We modeled fish populations that differed from each other only in efficiency of resource utilization and dispersal ability. The simulations showed that these trade-offs, along with the spatial and temporal variability of the environment, allow coexistence of several species competing exploitatively for a common resource type. This mechanism, while sharing some characteristics with other mechanisms proposed for coexistence of competing species, is novel in detail. Simulated fish densities resembled patterns observed in Everglades empirical data. Cells with hydroperiods less than 6 months accumulated negligible fish biomass. One unique model result was that, when multiple species coexisted, it was possible for one of the coexisting species to have both lower local resource utilization efficiency and lower dispersal ability than one of the other species. This counterintuitive result is a consequence of stronger effects of other competitors on the superior species. ?? 2005 NRC.

Conference Paper↗

USGS2006

Long-term changes of the Lake Michigan fish community following the reduction of exotic alewife ( Alosa pseudoharengus )

We used our long-term annual bottom trawl survey (1973–2004) in Lake Michigan to reveal the response of the native fish community to the biological control of a dominant exotic fish, alewife ( Alosa pseudoharengus ), as well as to changes in total phosphorus and salmonine biomass. Through nonmetric multidimensional scaling, we documented a 1970s community largely dominated by alewife, and then a shift to a community dominated by several native species during the 1980s through 1990s, when alewife remained at relatively low levels. We argue that the recovery of burbot ( Lota lota ), deepwater sculpin ( Myoxocephalus thompsonii ), and yellow perch ( Perca flavescens ) was partially or fully aided by the alewife reduction. We argue that changes in phosphorus or salmonines were not directly related to abundance increases of native species. An additional community shift occurred during 1999–2004, which coincided with a reduction in species richness and total fish biomass in our trawl. The mechanisms underlying this latest shift may be related to reductions in nutrients, but further research is required. The restoration of the native fish community has been incomplete, however, as emerald shiner ( Notropis atherinioides ), cisco ( Coregonus artedii ), and lake trout ( Salvelinus namaycush ) have yet to demonstrate recovery.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2012

Semi-discrete biomass dynamic modeling: an improved approach for assessing fish stock responses to pulsed harvest events

Continuous harvest over an annual period is a common assumption of continuous biomass dynamics models (CBDMs); however, fish are frequently harvested in a discrete manner. We developed semidiscrete biomass dynamics models (SDBDMs) that allow discrete harvest events and evaluated differences between CBDMs and SDBDMs using an equilibrium yield analysis with varying levels of fishing mortality ( F ). Equilibrium fishery yields for CBDMs and SDBDMS were similar at low fishing mortalities and diverged as F approached and exceeded maximum sustained yield ( F MSY ). Discrete harvest resulted in lower equilibrium yields at high levels of F relative to continuous harvest. The effect of applying harvest continuously when it was in fact discrete was evaluated by fitting CBDMs and SDBDMs to time series data generated from a hypothetical fish stock undergoing discrete harvest and evaluating parameter estimates bias. Violating the assumption of continuous harvest resulted in biased parameter estimates for CBDM while SDBDM parameter estimates were unbiased. Biased parameter estimates resulted in biased biological reference points derived from CBDMs. Semidiscrete BDMs outperformed continuous BDMs and should be used when harvest is discrete, when the time and magnitude of harvest are known, and when F is greater than F MSY .

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS1970

Concentrations of trace elements in Great Lakes fishes

The concentration of 15 trace elements was determined by activation analysis of samples of whole fish and fish livers from three of the Great Lakes: Michigan, Superior, and Erie. The average concentrations of 7 elements in 19 whole fish from 3 species were as follows: uranium, 3ppb (parts per billion); thorium, 6ppb; cobalt, 28ppb; cadmium, 94ppb; arsenic, 16ppb; chromium, 1ppm; and copper, 1.3ppm. The average concentrations of 8 elements in 40 liver samples from 10 species of fish were as follows: uranium, 2ppb; thorium, 2ppb; cobalt, 40ppb; copper, 9ppm; zinc, 30ppm; bromine, 0.4ppm; arsenic, 30ppb; and cadmium, 0.4ppm. Other elements observed in most of the samples were: antimony, 5100ppb; gold, 25ppb; lanthanum, 120ppb; rhenium, 0.55ppb; rubidium, 0.064ppm; and selenium, 0.12ppb.Trace element concentrations varied with species and lake. Uranium and thorium varied with species, but not for the same species from different lakes. The levels of copper, cobalt, zinc, and bromine varied little between species and lakes. The concentration of cadmium, arsenic, and chromium varied between species and with species between lakes.

Great Lakes↗

USGS2016

A stochastic bioenergetics model based approach to translating large river flow and temperature in to fish population responses: The pallid sturgeon example

In managing fish populations, especially at-risk species, realistic mathematical models are needed to help predict population response to potential management actions in the context of environmental conditions and changing climate while effectively incorporating the stochastic nature of real world conditions. We provide a key component of such a model for the endangered pallid sturgeon ( Scaphirhynchus albus ) in the form of an individual-based bioenergetics model influenced not only by temperature but also by flow. This component is based on modification of a known individual-based bioenergetics model through incorporation of: the observed ontogenetic shift in pallid sturgeon diet from marcroinvertebrates to fish; the energetic costs of swimming under flowing-water conditions; and stochasticity. We provide an assessment of how differences in environmental conditions could potentially alter pallid sturgeon growth estimates, using observed temperature and velocity from channelized portions of the Lower Missouri River mainstem. We do this using separate relationships between the proportion of maximum consumption and fork length and swimming cost standard error estimates for fish captured above and below the Kansas River in the Lower Missouri River. Critical to our matching observed growth in the field with predicted growth based on observed environmental conditions was a two-step shift in diet from macroinvertebrates to fish.

Missouri River↗

USGS1959

Plasmoptysis and gelatin of erythrocytes in coagulation of blood of freshwater bony fishes

1. A clot-like material which results from very rapid plasmoptysis and hydrophyllic swelling of karyoplasm of erythrocytes from freshwater fish was reported. This attribute was found to a lesser degree in erythrocytes from an amphibian, but it was almost lacking in those of an aquatic reptile. 2. Rapid clotting of fish blood with the usual clinical methods was confirmed in this work. Fish blood clotted more quickly with the slide test than with the capillary tube test. In the presence of water, complete coagulation of fish blood occurred in only 65 per cent of the time required for clotting to be completed in air. This speed is attributed to the water-erythrocyte reaction, and not to a quality of the plasma. 3. An attempt was made to correlate the findings with the need for hemostasis and blood coagulation that is peculiar to aquatic vertebrates.

Blood↗

USGS2020

Characterization of acoustic detection efficiency using a gliding robotic fish as a mobile receiver platform

Background Autonomous underwater vehicles (AUVs) and animal telemetry have become important tools for understanding the relationships between aquatic organisms and their environment, but more information is needed to guide the development and use of AUVs as effective animal tracking platforms. A forward-facing acoustic telemetry receiver (VR2Tx 69 kHz; VEMCO, Bedford, Nova Scotia) attached to a novel AUV (gliding robotic fish) was tested in a freshwater lake to (1) compare its detection efficiency (i.e., the probability of detecting an acoustic signal emitted by a tag) of acoustic tags (VEMCO model V8-4H 69 kHz) to stationary receivers and (2) determine if detection efficiency was related to distance between tag and receiver, direction of movement (toward or away from transmitter), depth, or pitch. Results Detection efficiency for mobile (robot-mounted) and stationary receivers were similar at ranges less than 300 m, on average across all tests, but detection efficiency for the mobile receiver decreased faster than for stationary receivers at distances greater than 300 m. Detection efficiency was higher when the robot was moving toward the transmitter than when moving away from the transmitter. Detection efficiency decreased with depth (surface to 4 m) when the robot was moving away from the transmitter, but depth had no significant effect on detection efficiency when the robot was moving toward the transmitter. Detection efficiency was higher when the robot was descending (pitched downward) than ascending (pitched upward) when moving toward the transmitter, but pitch had no significant effect when moving away from the transmitter. Conclusion Results suggested that much of the observed variation in detection efficiency is related to shielding of the acoustic signal by the robot body depending on the positions and orientation of the hydrophone relative to the transmitter. Results are expected to inform hardware, software, and operational changes to gliding robotic fish that will improve detection efficiency. Regardless, data on the size and shape of detection efficiency curves for gliding robotic fish will be useful for planning future missions and should be relevant to other AUVs for telemetry. With refinements, gliding robotic fish could be a useful platform for active tracking of acoustic tags in certain environments.

Animal Biotelemetry↗

USGS2024

Modeling regional occupancy of fishes using acoustic telemetry: A model comparison framework applied to lake trout

Acoustic telemetry is a common tool used in fisheries management to estimate fish space use (i.e., occupancy) from a local habitat scale to entire systems. Numerous analytical models have been developed to estimate different aspects of fish movement from telemetry datasets, yet evaluations of model performance and comparisons among models are limited. Here, we develop a framework to evaluate model estimates of regional occupancy in large and fragmented systems using an acoustic receiver array in Lake Champlain. We simulated the tracks of 100 acoustically tagged fish using a random walk function and created detection events based on receiver positions and distance-based detection probability. Regional occupancy for the simulated data was estimated by six movement models that ranged in analytical complexity, and results were compared to the true distributions for each simulated track to evaluate model error. The six movement models included: (1) a basic residency index using detections alone; (2) a residency index using last-observation-carried-forward; (3) a centers of activity model; (4) linear and non-linear interpolations (i.e., least-cost paths); and (5 and 6) two dynamic Brownian bridge movement models generated using separate packages in R. We developed a model selection process to compare model performance and select the optimal analysis based on simulation error. This process showed significant differences in model performance among the six movement models based on model error. Overall, the model generating least-cost paths using linear and non-linear interpolations consistently provided the most accurate regional occupancy estimates. Based on these simulation results, we applied this model to a case study that evaluated patterns in the regional distribution of stocked lake trout ( Salvelinus namaycush ) in Lake Champlain, which demonstrated distinct regional occupancy of two stocked lake trout groups. These results demonstrate potential for large variability in interpretation of acoustic telemetry data for describing regional fish distribution dependent on the analytical method used.

New York, Vermont↗

USGS2020

Cortisol is an osmoregulatory and glucose-regulating hormone in Atlantic sturgeon, a basal ray-finned fish

Our current understanding of the hormonal control of ion regulation in aquatic vertebrates comes primarily from studies on teleost fishes, with relatively little information on more basal fishes. We investigated the role of cortisol in regulating seawater tolerance and its underlying mechanisms in an anadromous chondrostean, the Atlantic sturgeon ( Acipenser oxyrinchus ). Exposure of freshwater-reared Atlantic sturgeon to seawater (25 ppt) resulted in transient (1–3 day) increases in plasma chloride, cortisol and glucose levels and long-term (6–14 day) increases in the abundance of gill Na + /K + /2Cl − cotransporter (NKCC), which plays a critical role in salt secretion in teleosts. The abundance of gill V-type H + -ATPase, which is thought to play a role in ion uptake in fishes, decreased after exposure to seawater. Gill Na + /K + -ATPase activity did not increase in 25 ppt seawater, but did increase in fish gradually acclimated to 30 ppt. Treatment of Atlantic sturgeon in freshwater with exogenous cortisol resulted in dose-dependent increases in cortisol, glucose and gill NKCC and H + -ATPase abundance. Our results indicate that cortisol has an important role in regulating mechanisms for ion secretion and uptake in sturgeon and provide support for the hypothesis that control of osmoregulation and glucose by corticosteroids is a basal trait of jawed vertebrates.

Journal of Experimental Biology↗

USGS2000

Quantitative polymerase chain reaction for transforming growth factor-β applied to a field study of fish health in Chesapeake Bay tributaries

Fish morbidity and mortality events in Chesapeake Bay tributaries have aroused concern over the health of this important aquatic ecosystem. We applied a recently described method for quantifying mRNA of an immunosuppressive cytokine, transforming growth factor-β (TGF-β), by reverse transcription quantitative-competitive polymerase chain reaction to a field study of fish health in the Chesapeake Basin, and compared the results to those of a traditional cellular immunoassay macrophage bactericidal activity. We selected the white perch ( Morone americana ) as the sentinel fish species because of its abundance at all of the collection sites. White perch were sampled from Chesapeake Bay tributaries in June, August, and October 1998. Splenic mononuclear cell TGF-β mRNA levels increased and anterior kidney macrophage bactericidal activity decreased, particularly in eastern shore tributaries, from June to August and October. The results of the two assays correlated inversely (Kendall's τ b = -0.600; p = 0.0102). The results indicated both temporal and spatial modulation of white perch immune systems in the Chesapeake Basin, and demonstrated the utility of quantitative PCR for TGF-β as a molecular biomarker for field assessment of teleost fish immune status.

Delaware, Maryland, Pennsylvania, Virginia↗

USGS2023

Climate impacts to inland fishes: Shifting research topics over time

Climate change remains a primary threat to inland fishes and fisheries. Using topic modeling to examine trends and relationships across 36 years of scientific literature on documented and projected climate impacts to inland fish, we identify ten representative topics within this body of literature: assemblages, climate scenarios, distribution, climate drivers, population growth, invasive species, populations, phenology, physiology, and reproduction. These topics are largely similar to the output from artificial intelligence application (i.e., ChatGPT) search prompts, but with some key differences. The field of climate impacts on fish has seen dramatic growth since the mid-2000s with increasing popularity of topics related to drivers, assemblages, and phenology. The topics were generally well-dispersed with little overlap of common words, apart from phenology and reproduction which were closely clustered. Pairwise comparisons between topics revealed potential gaps in the literature including between reproduction and distribution and between physiology and phenology. A better understanding of these relationships can help capitalize on existing literature to inform conservation and sustainable management of inland fishes with a changing climate.

PLOS Climate↗

USGS2022

Identifying monitoring information needs that support the management of fish in large rivers

Management actions intended to benefit fish in large rivers can directly or indirectly affect multiple ecosystem components. Without consideration of the effects of management on non-target ecosystem components, unintended consequences may limit management efficacy. Monitoring can help clarify the effects of management actions, including on non-target ecosystem components, but only if data are collected to characterize key ecosystem processes that could affect the outcome. Scientists from across the U.S. convened to develop a conceptual model that would help identify monitoring information needed to better understand how natural and anthropogenic factors affect large river fishes. We applied the conceptual model to case studies in four large U.S. rivers. The application of the conceptual model indicates the model is flexible and relevant to large rivers in different geographic settings and with different management challenges. By visualizing how natural and anthropogenic drivers directly or indirectly affect cascading ecosystem tiers, our model identified critical information gaps and uncertainties that, if resolved, could inform how to best meet management objectives. Despite large differences in the physical and ecological contexts of the river systems, the case studies also demonstrated substantial commonalities in the data needed to better understand how stressors affect fish in these systems. For example, in most systems information on river discharge and water temperature were needed and available. Conversely, information regarding trophic relationships and the habitat requirements of larval fishes were generally lacking. This result suggests that there is a need to better understand a set of common factors across large-river systems. We provide a stepwise procedure to facilitate the application of our conceptual model to other river systems and management goals.

Environmental Management↗