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At least 1,513 records · Page 84Linked to original sources
USGS2025

Data standardization and management to facilitate large-scale and interdisciplinary approaches access

Bringing data related to recreational fishers and fisheries together across large scales can provide tremendous insight. Methods for collecting, analysing, and storing data can vary dramatically, which can have significant implications for the use of these data. Efforts to standardise data within organisations often increase the ability to compare datasets from different areas, monitor changes over time, and increase the utility of the data for management and research. Though employing standardised methodology and data architecture results in the most straightforward and robust opportunities for data integration, doing so may not be possible due to variation in data collection objectives, continuity with historical programs, and resource limitations. Additionally, managing data according to FAIR principles (findability, accessibility, interoperability, and reusability) helps support data sharing and large-scale research efforts. Key elements of integrable data include appropriate data structures, adequate documentation of methodology, interpretable and complete metadata, and accessible storage formats. We document the potential benefits of standardising data and offer example approaches. We also explore best practices regarding the formatting, storage, and transmission of recreational fisher data. Efforts to increase the level of standardisation and integrability of recreational fisher data can create opportunities to better understand fisher behaviour, needs, and fulfilment.

Book chapter↗
USGS2025

Best practices for understanding recreational fishers

In this closing chapter of our edited book, we summarize what we believe are best practices for understanding recreational fishers. Fishers are an integral part of the recreational fishery social-ecological system, and we emphasize the importance of placing them in that context. We begin with an overview of the process of developing a project and conclude with some broad suggestions for standardising approaches to gather data from and about fishers, mainly focusing on social science methods. Throughout, we emphasize tactics to promote the development of inter- and transdisciplinary tools and processes, as a means of more fully understanding the full social-ecological system. This chapter draws from methodological details and suggestions developed throughout this book; we describe how they work together but point the reader to these specific chapters to further understand how to build interdisciplinarity into research and management.

Book chapter↗
USGS2017

Octocoral diseases in a changing ocean

Octocorals (Cnidaria, Octocorallia) constitute a geographically widely distributed and common group of marine invertebrates commonly referred to as “soft-corals,” “sea fans,” “horny corals,” “sea feathers,” and “sea plumes.” They are found from shallow coastal habitats to mesophotic and abyssal depths. Octocorals are important members of most Atlantic-Caribbean, Indo-Pacific, and Mediterranean coastal and mesophotic reef communities; however, information about their susceptibility to diseases, predation, and competition, and their relationship with changing environmental conditions is limited. At least 19 diseases have been observed in at least 42 common octocoral species throughout their range. Twelve of these have been reported in the wider Caribbean (CA), one in Brazil (BR), two in the Mediterranean (ME), one in the Eastern Pacific (EP), and three in the western Pacific (WP). Pathogenic and/or environmental causes have been identified for eight diseases, including viruses, terrestrial fungi, protozoans, bacteria and cyanobacteria, filamentous algae, parasitic copepods, and high temperature. Only a few of the suspected pathogens have been tested with Koch’s postulates. At least eight disease outbreaks have led to extensive octocoral mortalities in the CA, ME, BR, and EP with detrimental ecological consequences. The fungal disease Aspergillosis has produced the highest mortalities in the CA and the EP. Other fungi, protozoans, and the bacterium Vibrio coralliilyticus were identified as potential causes of the death of millions of colonies in two Mediterranean disease outbreaks. Bacterial and fungal agents seemed to be responsible for the mass mortalities in Brazil and the WP. Most outbreaks in all regions were linked to high thermal anomalies associated with climate change, which seems to be the major driver. Other biological stressors such as predation and/or competition produce injuries that may contribute to the spread of infections and mortality. Overfishing of common predators could lead to population explosions of octocoral-feeding species that produced mass mortalities in some Caribbean localities. Our lack of knowledge of causes and pathogenesis of octocoral diseases parallels that of hard corals. New diseases are being described almost every year concomitant with increasing seawater temperatures. The ecological and economic consequences could be significant, with drastic changes in the seascape of shallow coral reefs and other coastal marine habitats and reduction of their ecological services. Given our limited knowledge, our best options for recovery of octocorals and coral reefs in general include sound management of coastal fisheries, development and tourism; reduction of land- and sea-based pollution; and abating effects of climate change.

Book chapter↗
USGS2017

Human interactions with sirenians (manatees and dugongs)

There are three extant sirenian species of the Trichechidae family and one living Dugongidae family member. Given their close ties to coastal and often urbanized habitats, sirenians are exposed to many types of anthropogenic activities that result in challenges to their well-being, poor health, and even death. In the wild, they are exposed to direct and indirect local pressures as well as subject to large-scale stressors such as global climate change acting on regions or entire genetic stocks. In captivity, they are subject to husbandry and management practices based on our collective knowledge, or in some cases lack thereof, of their needs and welfare. It is therefore reasonable to consider that their current imperiled status is very closely linked to our actions. In this chapter, we identify and define human interactions that may impact dugongs and manatees, including hunting, fisheries, boat interactions, negative interactions with man-made structures, disease and contaminants, and global climate change. We examine techniques used to investigate these impacts and the influence of sirenian biology and of changing human behaviors on potential outcomes. We examine how this differs for dugongs and manatees in the wild and for those held in captivity. Finally, we provide possible mitigation strategies and ways to assess the efforts we are making to improve the welfare of individuals and to conserve these species. This chapter identifies how the welfare of these species is intrinsically linked to the human interactions these animals experience, and how the nature of these interactions has changed with societal shifts. We proffer suggested ways to minimize negative impacts. Current knowledge should be used to minimize negative human interactions and impacts, to promote positive impacts, and to protect these animals for the future.

Book chapter↗
USGS1997

The frequency and intensity of Atlantic hurricanes and their influence on the structure of south Florida mangrove communities

Hurricanes are formidable forces that wreak havoc on society and nature alike. Mangrove ecosystems are especially vulnerable because they thrive in the intertidal zone of tropical regions where hurricanes originate and are most frequent. Because mangroves are found at the land-sea interface where hurricanes are often most intense, these coastal forests are subject to damage from both high wind and surge. Mangroves are also an important habitat for many colonial and migratory birds and other wildlife, along with being nursery grounds for our fisheries. The fate of mangrove habitat as influenced by hurricanes may be threatened in the future under a global warming environment that might yield more intense storms than have been previously observed. Simulation models of hurricane abiotics and mangrove community dynamics have been developed to evaluate the effects of hurricanes on mangrove habitat across the South Florida landscape. Model applications show that hurricane frequency and intensity have varied spatially across Florida’s lower peninsula over the last century of record. Hindcast simulations of actual hurricane tracks and conditions seem to account for the structural composition of modernday mangrove forests across South Florida. A recurrence interval of major storms every 30 years over the last century is the major factor controlling mangrove ecosystem dynamics in South Florida. Some climate change models predict an increase in hurricane intensity over the next century that may further alter the structure and composition of our mangrove ecosystems. Model results of climate change scenarios indicate that future mangrove forests are likely to be diminished in stature and perhaps include a higher proportion of red mangroves. This modeling approach offers the ability to assess decadal and longer time scale changes in hurricane behavior and its effects on community structure and distribution of important plant associations such as the fate of mangrove habitat.

Florida↗
USGS2010

The transboundary nature of seabird ecology

The term ‘seabird’ is generally applied to avian species that forage in the marine environment over open water. Seabirds typically nest in colonies and are long-lived species with low annual reproductive rates. Seabird breeding sites typically occur on islands or along coasts and as such are often at the boundaries of ecological or political zones. During the breeding season, seabirds cross a very distinct terrestrial/marine ecological boundary on a regular basis to forage. Even relatively ‘local’ species cross multiple jurisdictions within a day (e.g., state lands and waters, and federal waters) while pelagic species may transit through international waters on a daily, weekly, or monthly time-frame. Seabird life-histories expose individuals and populations to environmental conditions affecting both terrestrial and marine habitats. The wide-ranging and transboundary nature of seabird ecology also exposes these species to various environmental and anthropogenic forces such as contamination, commercial fisheries and climate forcing that also are transboundary in nature. Therefore, wherever conservation of seabirds or the management of their populations is the goal, consideration must be given to ecosystem dynamics on land and at sea. Because the jurisdiction of agencies does not cross the land-sea boundary in the same manner as the seabirds they are managing, these efforts are facilitated by multi-agency communication and collaboration. By their very nature and by the nature of the systems that they must function within, seabirds embody the complexity of wildlife ecology and conservation in the twenty-first century.

Book chapter↗
USGS2015

Bioenergetics modeling of percid fishes

A bioenergetics model for a percid fish represents a quantitative description of the fish’s energy budget. Bioenergetics modeling can be used to identify the important factors determining growth of percids in lakes, rivers, or seas. For example, bioenergetics modeling applied to yellow perch ( Perca flavescens ) in the western and central basins of Lake Erie revealed that the slower growth in the western basin was attributable to limitations in suitably sized prey in western Lake Erie, rather than differences in water temperature between the two basins. Bioenergetics modeling can also be applied to a percid population to estimate the amount of food being annually consumed by the percid population. For example, bioenergetics modeling applied to the walleye ( Sander vitreus ) population in Lake Erie has provided fishery managers valuable insights into changes in the population’s predatory demand over time. In addition, bioenergetics modeling has been used to quantify the effect of the difference in growth between the sexes on contaminant accumulation in walleye. Field and laboratory evaluations of percid bioenergetics model performance have documented a systematic bias, such that the models overestimate consumption at low feeding rates but underestimate consumption at high feeding rates. However, more recent studies have shown that this systematic bias was due, at least in part, to an error in the energy budget balancing algorithm used in the computer software. Future research work is needed to more thoroughly assess the field and laboratory performance of percid bioenergetics models and to quantify differences in activity and standard metabolic rate between the sexes of mature percids.

Book chapter↗
USGS2023

Aging contrast: A contrastive learning framework for fish re-identification across seasons and years.

The fields of biology, ecology, and fisheries management are witnessing a growing demand for distinguishing individual fish. In recent years, deep learning methods have emerged as a promising tool for image-based fish recognition. Our study is focused on the re-identification of masu salmon from Japan, wherein fish were individually marked and photographed to evaluate discriminative body characteristics. Unlike previous studies where fish were sampled during the same time period, we evaluated individual re-identification across seasons and years to address challenges due to aging, seasonal variation, and other factors. In this paper, we propose a new contrastive learning framework called Ag ing Co ntrast (AgCo) and evaluate its performance on the masu salmon dataset. Our analysis indicates that, unlike large changes in body size over time, the pattern of parr marks on the lateral line of the fish body remains relatively stable, despite some change in coloration across seasons. AgCo accounts for such seasonally-invariant features and performs re-identification based on the cosine similarity of these features. Extensive experiments show that our AgCo method outperforms other state-of-the-art methods.

Conference Paper↗
USGS1986

Distribution of early life history stages of fishes in selected pools of the upper Mississippi River

Effective management of the fishery resources of the Upper Mississippi River and successful mitigation of the loss of critical habitat depend in part on an understanding of the reproductive and early life history requirements of the affected fishes. However, little is known about the use of nursery areas by fishes in the river. Of the nearly 130 species identified in the adult ichthyofauna, only a few are represented proportionally in the available data on early life stages because study designs have not included consideration of the early stages, collection gears have not adequately sampled the young, and eggs and larvae of some species are difficult to sample by conventional approaches. For the species collected, information is available on seasonal variations in total densities, composition, and catch among different habitat types. However, the data are most accurate for species with buoyant early life stages, such as freshwater drum ( Aplodinotus grunniens ) and gizzard shad ( Dorosoma cepedianum ). Eggs and larvae of freshwater drum dominate collections made in the main channel, whereas other larval fishes are usually most abundant in backwater habitats. The species found there usually deposit eggs on the substrate or on vegetation. Habitat preferences (as indicated by relative abundance) often shift as development proceeds and physical and behavioral changes occur in the larvae. Only limited information is available on the distribution of larvae within habitats, but it is clear that variations within habitats are significant.

Hydrobiologia↗
USGS1991

Acute toxicities to larval rainbow trout of representative compounds detected in Great Lakes fish

In recent years the National Fisheries Research Center-Great Lakes has ranked the potential hazard to fish and invertebrates of various chemical compounds detected in two Great Lakes fishes-- lake trout, Salvelinus namaycush , and walleye, Stizostedion vitreum vitreum (Hesselberg and Seelye 1982). This hazard assessment has included the identification of the potential sources of the compounds, determination of the occurrence and abundance of the compounds in Great Lakes fish, and the determination of acute toxicities of representative compounds of 19 chemical classes (Passino and Smith 1987a). In further studies Smith et al. (1988) focused on 6 of the 19 classes of compounds using the zooplankter Daphnia pulex as the test organism. They ranked the six classes as follows (in decreasing order of toxicity): polycyclic aromatic hydrocarbons (PAHs), alkyl halides, nitrogen-containing compounds, cyclic alkanes, heterocyclic nitrogen compounds, and silicon-containing compounds.

Bulletin of Environmental Contamination and Toxico↗
USGS1993

Resource protection for waterbirds in Chesapeake Bay

Many living resources in the Chesapeake Bay estuary have deteriorated over the past 50 years. As a result, many governmental committees, task forces, and management plans have been established. Most of the recommendations for implementing a bay cleanup focus on reducing sediments and nutrient flow into the watershed. We emphasize that habitat requirements other than water quality are necessary for the recovery of much of the bay's avian wildlife, and we use a waterbird example as illustration. Some of these needs are: (1) protection of fast-eroding islands, or creation of new ones by dredge deposition to improve nesting habitat for American black ducks(Anas rubripes), great blue herons(Ardea herodias), and other associated wading birds; (2) conservation of remaining brackish marshes, especially near riparian areas, for feeding black ducks, wading birds, and wood ducks(Aix sponsa); (3) establishment of sanctuaries in open-water, littoral zones to protect feeding and/or roosting areas for diving ducks such as canvasbacks(Aythya valisineria) and redheads(Aythya americana), and for bald eagles(Haliaeetus leucocephalus); and (4) limitation of disturbance by boaters around nesting islands and open-water feeding areas. Land (or water) protection measures for waterbirds need to include units at several different spatial scales, ranging from ?points? (e.g., a colony site) to large-area resources (e.g., a marsh or tributary for feeding). Planning to conserve large areas of both land and water can be achieved following a biosphere reserve model. Existing interagency committees in the Chesapeake Bay Program could be more effective in developing such a model for wildlife and fisheries resources.

Chesapeake Bay↗
USGS2002

Distribution and movement of shortnose sturgeon (Acipenser brevirostrum) in the Chesapeake Bay

During a reward program for Atlantic sturgeon ( Acipenser oxyrinchus ), 40 federally endangered shortnose sturgeon ( Acipenser brevirostrum ) were captured and reported by commercial fishers between January 1996 and January 2000 from the Chesapeake Bay. Since this is more than double the number of published records of shortnose sturgeon in the Chesapeake Bay between 1876 and 1995, little information has been available on distributions and movement. We used fishery dependent data collected during the reward program to determine the distribution of shortnose sturgeon in the Chesapeake Bay. Sonically-tagged shortnose sturgeon in the Chesapeake Bay and Delaware River were tracked to determine if individuals swim through the Chesapeake and Delaware Canal. Shortnose sturgeon were primarily distributed within the upper Chesapeake Bay. The movements of one individual, tagged within the Chesapeake Bay and later relocated in the canal and Delaware River, indicated that individuals traverse the Chesapeake and Delaware Canal.

Maryland, Virginia↗
USGS2002

Spatial and temporal distribution of horseshoe crab (Limulus polyphemus) Spawning Delaware Bay: Implications for monitoring

Concern for the status of horseshoe crab ( Limulus polyphemus ) has increased as harvest for conch and eel bait has increased and spawning habitat has decreased. In early 1999 a workshop was held at the behest of the Atlantic States Marine Fisheries Commission to design a statistically valid survey of horseshoe crab spawning in Delaware Bay. The survey that resulted was a redesign of a volunteer-based spawning survey that began in 1990, and its network of volunteers was relied on to implement the three-stage sampling design in 1999. During May and June of 1999, 163 participants surveyed during the highest of the daily high tides on 16 beaches (8 on each site of Delaware Bay). During the first half of the spawning season, spawning was associated with lunar phases, but moderated by wave height. Disproportionately more spawning occurred within 3 d of the first new and full moons, and spawning activity (measured by an index of female density) was correlated inversely to the percent of beaches with waves ≥0.3 m. Spawning was heaviest on the Delaware shore around the full moon in May in spite of low waves in New Jersey during the new and full moons in May. Number of beaches sampled was the most important factor in determining the precision of the spawning index and power to detect a decline. Explicit consideration of statistical power has been absent from the current debate on horseshoe crab status and harvest. Those who argue against harvest restrictions because of a lack of statistically significant declines take on a burden to show that the surveys they cite have high statistical power. We show the Delaware Bay spawning survey will achieve high statistical power with sufficient sampling intensity and duration. We recommend that future Delaware Bay spawning surveys sample on 3 d around each new and full moon in May and June and increase the number of beaches to ensure high statistical power to detect trends in baywide spawning activity.

Delaware, New Jersey↗
USGS2001

Effects of stream acidification and habitat on fish populations of a North American river

Water quality, physical habitat, and fisheries at sixteen reaches in the Neversink River Basin were studied during 1991-95 to identify the effects of acidic precipitation on stream-water chemistry and on selected fish-species populations, and to test the hypothesis that the degree of stream acidification affected the spatial distribution of each fish-species population. Most sites on the East Branch Neversink were strongly to severely acidified, whereas most sites on the West Branch were minimally to moderately acidified. Mean density of fish populations ranged from 0 to 2.15 fish/m 2 ; biomass ranged from 0 to 17.5 g/m 2 . Where brook trout were present, their population density ranged from 0.04 to 1.09 fish/m 2 , biomass ranged from 0.76 to 12.2 g/m 2 , and condition (K) ranged from 0.94 to 1.07. Regression analyses revealed strong relations ( r 2 ± 0.41 to 0.99; p ≤ 0.05) between characteristics of the two most common species (brook trout and slimy sculpin) populations and mean concentrations of inorganic monomeric aluminum (Al im ), pH, Si, K + , NO 3 - , NH 4 + , DOC, Ca 2+ , and Na + ; acid neutralizing capacity (ANC); and water temperature. Stream acidification may have adversely affected fish populations at most East Branch sites, but in other parts of the Neversink River Basin these effects were masked or mitigated by other physical habitat, geochemical, and biological factors.

New York↗
USGS2008

Contaminant levels in rainbow trout, Oncorhynchus mykiss, and their diets from Missouri coldwater hatcheries

Organochlorine and metal contaminants often occur in commercial fish diets and can accumulate in fish to levels of concern for human consumption. Contaminant levels were investigated in diet and rainbow trout fillets from Missouri coldwater hatcheries used in 'put and take' fisheries. The average fillet:diet ratio was <0.1 for lead and cadmium, 0.4-0.6 for organochlorine compounds, and about 0.8 for mercury. Trout fillet concentrations for all contaminants were low (<50 ng/g) and below Missouri's fish consumption advisory trigger levels. ?? 2008 Springer Science+Business Media, LLC.

Bulletin of Environmental Contamination and Toxico↗
USGS2008

Cause-specific temporal and spatial trends in green sea turtle strandings in the Hawaiian Archipelago (1982-2003)

We investigated cause-specific temporal and spatial trends in sea turtle strandings in the Hawaiian Archipelago. Five species of sea turtle were recorded in 3,861 strandings over a 22-year period (1982–2003). Green turtles comprised 97% of these strandings with size and gender composition reflecting the demographic structure of the resident green turtle population and relative green turtle abundance in Hawaiian waters. The cause of strandings was determined by necropsy based on a complete gross external and internal examination. Totally 75% of the 3,732 green turtle strandings were from Oahu where strandings occur year-round. The most common known cause of the green turtle strandings was the tumour-forming disease, fibropapillomatosis (28%) followed by hook-and-line fishing gear-induced trauma (7%), gillnet fishing gear-induced trauma (5%), boat strike (2.5%), and shark attack (2.7%). Miscellaneous causes comprised 5.4% of strandings whereas 49% of green turtle strandings could not be attributed to any known cause. Green turtle strandings attributable to boat strike were more likely from Kauai and Oahu while fibropapilloma strandings were more likely from Oahu and Maui. Hook-and-line gear strandings were more likely from Oahu due to higher per capita inshore fishing effort. The specific mortality rate (conditional probability) for fibropapillomatosis was 88%, 69% for gillnet gear and 52% for hook-and-line gear. The probability of a dead green turtle stranding increased from 1982 but levelled off by the mid-1990s. The declining mortality risk was because the prevalence and severity of fibropapillomatosis has decreased recently and so has the mortality risk attributable to gillnet gear. Despite exposure to disease and inshore fishing gears, the Hawaiian green turtle stock continues to recover following protection since the late 1970s. Nevertheless, measures to reduce incidental capture of sea turtles in coastal Hawaiian fisheries would be prudent, especially since strandings attributable to hook-and-line fishing gear have increased steadily since 1982.

Hawai'i↗
USGS2024

In-situ valve opening response of eastern oysters to estuarine conditions

High-frequency recordings of valve opening behavior (VOB) in bivalves are often used to detect changes in environmental conditions. However, generally a single variable such as temperature or the presence of toxicants in the water is the focus. A description of routine VOB under non-stressful conditions is also important for interpreting responses to environmental changes. Here we present the first detailed quantitative investigation of the in-situ VOB of eastern oysters ( Crassostrea virginica ) to environmental variables typically not considered stressful. The VOB of eight individuals was monitored for seven weeks in a Louisiana estuary. We examined the relationships between VOB metrics (variance in mean % max opening among oysters, the probability of an oyster being closed, and the rate of valve closure), and temperature, salinity, chlorophyll-a (chl-a) concentration, the rate of change in those environmental variables, and the rate of change in water depth. Relationships were analyzed through statistical models including rates of change over 0, 0.25, 1-, 6-, 12-, and 24-hours. All the responses were best explained by the 12-hour time step model. The interaction effect between salinity and the rate of change of salinity had the greatest impact on variance in oysters’ behavior. Oysters closed faster at higher salinities and were more likely to be closed at lower chl-a concentrations. Significant interactions were found between many environmental variables, indicating a high level of complexity of oyster behavior in the natural environment. This study contributes to a better understanding of the impact of environmental conditions on oyster behavior and can help inform predictive tools for restoration initiatives and fisheries practices.

Louisiana↗
USGS2013

PCB concentrations and activity of sea lamprey Petromyzon marinus vary by sex

We determined the polychlorinated biphenyl (PCB) concentrations of 40 male and 40 female adult sea lampreys Petromyzon marinus captured in the Cheboygan River, a tributary to Lake Huron, during May 2011. In addition, we performed a laboratory experiment using passive integrated transponder tags to determine whether male adult sea lampreys were more active than female adult sea lampreys. Sex had a significant effect on PCB concentration, and PCB concentration at a given level of sea lamprey condition was approximately 25 % greater in males than in females. Adjusting for the difference in condition between the sexes, males averaged a 17 % greater PCB concentration compared with females. Results from the laboratory experiment indicated that males were significantly more active than females. The observed sex difference in PCB concentrations was not due to female sea lampreys releasing eggs at spawning because the sea lamprey is semelparous, and we caught the sea lampreys before spawning. Rather, we attributed the sex difference in PCB concentrations to a greater rate of energy expenditure in males compared with females. We proposed that this greater rate of energy expenditure was likely due to greater activity. Our laboratory experiment results supported this hypothesis. A greater resting metabolic rate may also have contributed to a greater rate of energy expenditure. Our findings should eventually be applicable toward improving control of sea lamprey, a pest responsible for considerable damage to fisheries in lakes where it is not native.

Michigan↗