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USGS2025

Future forest conditions under alternative management and hydrological scenarios in the Upper Mississippi River floodplain

Context Floodplain forests are being transformed by multiple pressures, prompting widespread management and restoration efforts. It is uncertain how disturbances, including hydrologic change, and management actions will interact to influence the ecology of these threatened forests. Objectives This study examined the effects of alternative management and hydrologic regimes on forest succession at an Upper Mississippi River floodplain site with a restoration project in planning. Methods We used the spatially explicit forest landscape model, LANDIS-II, to simulate forest succession for 100 years under four hydrogeomorphic management scenarios, three forest management scenarios, and two scenarios of future hydrologic conditions. We evaluated changes in forest biomass and composition over time and assessed the relative importance of management actions and hydrologic change on succession. Results Forest aboveground biomass decreased in all management-hydrology scenarios, especially in the wetter hydrological scenario. Intensified hydrogeomorphic and forest management scenarios reduced the magnitude and extent of biomass declines; however, they were unable to prevent overall declines in biomass or cause large shifts in tree species composition. Silver maple ( Acer saccharinum ) was projected to decrease in biomass, while increases in biomass were projected for several late-successional species including swamp white oak ( Quercus bicolor ). Among the factors influencing variation in biomass, forest management had the largest influence in the first 50 years of our simulations, but hydrological regime became the most important factor by the end of the century. Conclusions Our simulations indicate that management actions could play an important role in the conservation of floodplain forests, but their effectiveness will likely be limited if recent upward trends in flooding conditions in this system continue in the future. Thus, our results highlight both the potential benefits and limitations of management actions in the face of hydrologic change.

Iowa, Minnesota, Wisconsin↗

USGS2023

Evaluating the utility of effective breeding size estimates for monitoring sea lamprey spawning abundance

Sea lamprey ( Petromyzon marinus ) is an invasive species that is a significant source of mortality for populations of valued fish species across the North American Great Lakes. Large annual control programs are needed to reduce the species' impacts; however, the number of successfully spawning adults cannot currently be accurately assessed. In this study, effective breeding size ( N b ) and the minimum number of spawning adults ( N s ) were estimated for larval cohorts from 17 tributaries across all five Great Lakes using single nucleotide polymorphisms (SNP) genotyped via RAD-capture sequencing. Reconstructed larval pedigrees showed substantial variability in the size and number of full- and half-sibling groups, N b (<1–367), and N s (5–545) among streams. Generalized linear models examining the effects of stream environmental characteristics and aspects of sampling regimes on N b and N s estimates identified sample size, the number of sampling sites, and drainage area as important factors predicting N b and N s . Correlations between N b , N s , and capture–mark–recapture estimates of adult census size ( N c ) increased when streams with small sample sizes ( n < 50) were removed. Results collectively indicate that parameters estimated from genetic data can provide valuable information on spawning adults in a river system, especially if sampling regimes are standardized and physical stream covariates are included.

Ecology and Evolution↗

USGS2021

Assessment of multiple ecosystem metabolism methods in an estuary

Ecosystem metabolism is a key ecological attribute and easy to describe, but quantifying metabolism in estuaries is challenging. Properly scaling measurements through time and space requires consideration of hydrodynamics and mixing water from heterogeneous sources, making any estimation uncertain. Here, we compared three methods for modeling ecosystem metabolism in a portion of the Sacramento-San Joaquin Delta. Metabolism estimates based on laboratory incubations, continuous in situ buoys, and an oxygen isotope approach all indicated the system was net heterotrophic, and calculated rates were comparable in magnitude when averaged over the 2-month study. Daily metabolic rates based on in situ buoys were the most variable, likely due to horizontal and vertical advection and poor portrayal of the dissolved oxygen budget. After temporally averaging in situ buoy estimates or smoothing the dissolved oxygen time series for tidal effects, rates were more comparable to the other methods, which may be necessary to account for tidal advection and unbalanced contributions from subhabitats within the metabolic footprint. Incubation-based rates represent the finest temporal and spatial scale and only account for pelagic processes, which may explain why incubation-based rates were lower than the other two methods. The oxygen isotope method provided temporally and spatially integrated rates that were bracketed by the other two methods and may be a valuable tool in systems matching the model requirements. Because uncertainty arises in each method from a number of assumptions and scaling calculations, the resolution of metabolic rates in estuaries is likely coarser and more variable than in other aquatic ecosystems.

California↗

USGS2025

Sediment transport modeling in Lake Ontario embayments: Impacts on fish spawning substrates

Anthropogenically-driven sedimentation changes have had adverse environmental impacts on aquatic environments, including reductions in fish spawning habitats in embayments worldwide. This study was motivated by the need to understand the impacts of waves and current-driven sedimentation patterns on traditional spawning areas and their effect on sustainable fish reproduction in the Great Lakes. Coupled hydrodynamic, wave, and sediment transport models were developed within the Delft3D-SWAN (DS) framework to predict sedimentation patterns in two embayments in Lake Ontario, Sodus Bay and Chaumont Bay, that have been historically important fish spawning habitats. These bays, with distinct geomorphic characteristics and connectivity to Lake Ontario, offer an opportunity to examine how wind-generated waves and currents impact bed shear stress and subsequent sedimentation patterns. Areas experiencing greater wave-induced bed shear stress were identified and compared between the two bays. Simulated sediment transport patterns showed notable erosion near the lake-bay connections and increased deposition in the inner areas of both embayments. Observed Cisco embryo deposition corresponded to regions of high sheer stress and lower sedimentation, indicating physical attributes in those areas that are important for embryo survival. These results show where sediment settling and erosion occur in the two bays and highlight potential impacts on traditional spawning areas.

New York↗

USGS2024

Factors contributing to pesticide contamination in riverine systems: The role of wastewater and landscape sources

Wastewater treatment plant (WWTP) discharges can be a source of organic contaminants, including pesticides, to rivers. An integrated model was developed for the Potomac River watershed (PRW) to determine the amount of accumulated wastewater percentage of streamflow (ACCWW) and calculate predicted environmental concentrations (PECs) for 14 pesticides in non-tidal National Hydrography Dataset Plus Version 2.1 stream segments. Predicted environmental concentrations were compared to measured environmental concentrations (MECs) from 32 stream sites that represented a range of ACCWW and land use to evaluate model performance and to assess possible non-WWTP loading sources. Statistical agreement between PECs and MECs was strongest for insecticides, followed by fungicides and herbicides. Principal component analysis utilizing optical fluorescence and ancillary water quality data identified wastewater and urban runoff sources. Pesticides that indicated relatively larger sources from WWTPs included dinotefuran, fipronil, carbendazim, thiabendazole, and prometon whereas imidacloprid, azoxystrobin, propiconazole, tebuconazole, and diuron were more related to urban runoff. In addition, PECs generally comprised a low proportion of MECs, which indicates possible dominant loading sources beyond WWTP discharges. Cumulative potential toxicity was higher for sites with greater ACCWW and/or located in developed areas. Imidacloprid, fipronil, and carbendazim accounted for the largest portion of predicted potential toxicity across sites. The chronic aquatic life toxicity benchmarks for freshwater invertebrates were exceeded for 82 % of the imidacloprid detections ( n = 28) and 47 % of the fipronil detections ( n = 19). These results highlight the ecological implications of pesticide contamination from WWTP discharges and also the potential legacy effects from accumulated soil and groundwater sources. Pesticide management strategies that mitigate both current and historical impacts may improve the health of aquatic ecosystems.

Potomac River watershed↗

USGS2006

Hyporheic exchange and fulvic acid redox reactions in an alpine stream/wetland ecosystem, Colorado front range

The influence of hyporheic zone interactions on the redox state of fulvic acids and other redox active species was investigated in an alpine stream and adjacent wetland, which is a more reducing environment. A tracer injection experiment using bromide (Br - ) was conducted in the stream system. Simulations with a transport model showed that rates of exchange between the stream and hyporheic zone were rapid (α ≈ 10 - 3 s -1 ). Parallel factor analysis of fluorescence spectra was used to quantify the redox state of dissolved fulvic acids. The rate coefficient for oxidation of reduced fulvic acids (λ = 6.5 × 10 - 3 s -1 ) in the stream indicates that electron-transfer reactions occur over short time scales. The rate coefficients for decay of ammonium (λ = 1.2 × 10 - 3 s -1 ) and production of nitrate (λ = −1.0 × 10 - 3 s -1 ) were opposite in sign but almost equal in magnitude. Our results suggest that fulvic acids are involved in rapid electron-transfer processes in and near the stream channel and may be important in determining ecological energy flow at the catchment scale.

Colorado↗

USGS1991

Introgression of coyote mitochondrial DNA into sympatric North American gray wolf populations

Mitochondrial DNA (mtDNA) genotypes of gray wolves and coyotes from localities throughout North America were determined using restriction fragment length polymorphisms. Of the 13 genotypes found among the wolves, 7 are clearly of coyote origin, indicating that genetic transfer of coyote mtDNA into wolf populations has occurred through hybridization. The transfer of mtDNA appears unidirectional from coyotes into wolves because no coyotes sampled have a wolf-derived mtDNA genotype. Wolves possessing coyote-derived genotypes are confined to a contiguous geographic region in Minnesota, Ontario, and Quebec, and the frequency of coyote-type mtDNA in these wolf populations is high (>50%). The ecological history of the hybrid zone suggests that hybridization is taking place in regions where coyotes have only recently become abundant following conversion of forests to farmlands. Dispersing male wolves unable to find conspecific mates may be pairing with female coyotes in deforested areas bordering wolf territories. Our results demonstrate that closely related species of mobile terrestrial vertebrates have the potential for extensive genetic exchange when ecological conditions change suddenly.

Evolution↗

USGS2000

Seasonal distribution of bird populations at the Patuxent Research Refuge

A detailed study of seasonal changes in bird populationswas made at the Patuxent Research Refuge, located between Bowie and Laurel, Maryland during the years 1936-1949. The history of the Refuge is reviewed and its physical and biological characteristlcs summarized.. The methods of study used during the investigation mcluded: periodic censuses of a representative 304-acre study area over a two-year period; a census of the breeding population of the entire. Refuge during one year; detailed population studies of representative habitats during the breeding season; censuses of the wintering population of. the entire Refuge during two years; general surveys of wintering populations for seven years; and general observations of seasonal changes in bird populatlons over a fourteen-year period, including data from an extensive banding program and from many special types of censuses. The phenology of the Refuge is described in conslderable detail throughout the year, with special attention given to major fluctuatIons in bIrd populations as correlated with climatic changes and with seasonal aspectlon. of the vegetation. The component specIes of birds m the more important migration waves are listed. Figures approximating the Refuge breeding and wmtering populations are given, while indices representing the relative abundance of bird populations, based on figures from the two-year seasonal populatlon study, were obtained for the entire year. The greatest variety of species as well as the greatest number of individuals occurred on the Refuge during the migration .periods in spring and fall, the variety of species being slightly higher in spring than in fa!l, while the population of individuals was considerably higher in fall. Wmtering and breeding populations were low and relatively stable compared to the populations at other seasons.The ecological affinities of the bird populations differed greatly from one season to another. Species characteristic of edge habitats were much more numerous in winter, while forest species were predominant in summer. Insectivorous species comprised a large proportion (40 to 60 percent) of the total population during the warmer months, but were of minor importance in winter. The greatest number of species of birds on the Refuge occurred during the population peaks of insectivorous species, while the largest number of individuals was found during the population peaks of omnivorous and herbivorous species. The population peaks of insectivorous species were found to occur much later in spring and considerably earlier in fall than the. corresponding peaks of omnivorous and herbivorous species. The Fringillidae contributed the greatest number of individuals in winter, while the Parulidae was the most important family (numerically) in summer. Water birds and marsh birds were relatively unimportant throughout the year, due to the scarcity of suitable habitats. Permanent resident species were found to vary from about one-fifth to slightly less than one-half of the total population throughout the year, although many individuals of these species were either transients or part-time residents. Summer residents and winter residents were more abundant than permanent residents during their respective periods of occurrence. During the greater part of the migration period, transient species were found to comprise only 10 to 20 percent of the total population. transient individuals of all species would account for a much larger proportion of the population at this time. After comparing the results of these investigations with similar studies in other areas, it is believed that the seasonal population changes on the Patuxent Research Refuge are fairly representative of those occurring throughout the Middle Atlantic and East-central States. Yearly variations in seasonal population changes are described and the causative factors indicated, when known. Of these, food supply and weather conditions were generally the m

Society of Environmental Toxicology and Chemistry,↗

USGS2021

Improved fire severity mapping in the North American boreal forest using a hybrid composite method

Fire severity is a key driver shaping the ecological structure and function of North American boreal ecosystems, a biome dominated by large, high-intensity wildfires. Satellite-derived burn severity maps have been an important tool in these remote landscapes for both fire and resource management. The conventional methodology to produce satellite-inferred fire severity maps generally involves comparing imagery from 1 year before and 1 year after a fire, yet environmental conditions unique to the boreal have limited the accuracy of resulting products. We introduce an alternative method – the ‘hybrid composite’ – based on deriving mean severity over time on a per-pixel basis within the cloud-computing environment of Google Earth Engine. It constructs the post-fire image from satellite data composited from all valid images (i.e., clear-sky and snow-free) acquired in the time period immediately after fire through the early growing season of the following year. We compare this approach to paired-scene and composite approaches where the post-fire time period is from the growing season 1 year after fire. Validation statistics based on field-derived data for 52 fires across Alaska and Canada indicate that the hybrid composite method outperforms the other approaches. This approach presents an efficient and cost-effective means to monitor and explore trends and patterns across broad spatial domains, and could be applied to fires in other regions, especially those with frequent cloud cover or rapid vegetation recovery.

Alaska↗

USGS2026

Invasion resistance varies by fuel break type in sagebrush ecosystems

Background Wildfire is an increasingly important driver of changes within sagebrush (Artemisia spp. L.) ecosystems of the western USA, often resulting in increased spread of exotic annual grasses, such as cheatgrass (Bromus tectorum L.), and subsequent losses of native vegetation and wildlife habitat. Fuel breaks— areas of land treated to reduce or redistribute fuel loads — are widely implemented to help prevent the spread of wildfires and provide areas to facilitate firefighting efforts. However, localized installation and maintenance of fuel breaks directly reduce or remove vegetation and may propagate the spread of exotic annual grasses into fuel break boundaries and surrounding areas, inadvertently weakening ecological resilience to disturbance. To investigate if exotic annual grass cover was associated with mowed or green strip fuel breaks across the sagebrush biome, we combined multiple data sources and methodologies. We used targeted field surveys and land-management agency monitoring data within a space-for-time substitution framework coupled with a progressive-change before-after control-impact (PC BACI) study design using historical remotely sensed vegetation cover data which allowed us to account for potential confounding effects of roads on annual grass cover. Results Models using both field collected and remotely sensed vegetation indices estimated increases in exotic annual grass cover over time following mowed fuel break installation, and higher exotic annual grass cover closer to mowed fuel breaks. These increases in exotic annual grass occurred within, at 500 m and at 1000 m from mowed fuel breaks. However, we found variable patterns of exotic annual grass after green strip fuel break installation depending on the data source. No increase in exotic annual grass were indicated by either analysis at distances greater than 500 m from green strip fuel breaks. However, our and field data analyses disagreed on the direction of the association of exotic annual grass cover and green strip fuel breaks. Conclusions Although fuel breaks are an important tool in managing wildland fire, our analysis underscores the importance of planting fire-resistant vegetation, rather than mowing alone, to reduce invasion by annual grasses within and around fuel breaks in sagebrush ecosystems. In addition, site characteristics that hinder the proliferation of exotic annual grasses could be evaluated when installing fuel breaks to minimize unintended effects of exotic annual grass on surrounding sagebrush habitat.

California, Idaho, Nevada, Oregon, Utah↗

USGS2016

Habitat drives dispersal and survival of translocated juvenile desert tortoises

1.In spite of growing reliance on translocations in wildlife conservation, translocation efficacy remains inconsistent. One factor that can contribute to failed translocations is releasing animals into poor quality or otherwise inadequate habitat. 2.Here we used a targeted approach to test the relationship of habitat features to post-translocation dispersal and survival of juvenile Mojave desert tortoises Gopherus agassizii . 3.We selected three habitat characteristics—rodent burrows, substrate texture (prevalence and size of rocks), and washes (ephemeral river beds)–that are tied to desert tortoise ecology. At the point of release, we documented rodent burrow abundance, substrate texture, and wash presence and analysed their relationship to maximum dispersal. We also documented relative use by each individual for each habitat characteristic and analysed their relationships with survival and fatal encounters with a predator in the first year after release. 4.In general, the presence of refugia or other areas that enabled animals to avoid detection, such as burrows and substrate, decreased overall mortality as well as predator-mediated mortality. The presence of washes and substrate that enhanced the tortoises’ ability to avoid detection also associated with reduced dispersal away from the release site. These results indicate an important role for all three measured habitat characteristics in driving dispersal, survival, or fatal encounters with a predator in the first year after translocation. 5. Synthesis and applications . Resource managers using translocations as a conservation tool should prioritize acquiring data linking habitat to fitness. In particular, for species that depend on avoiding detection, refuges such as burrows and habitat that improved concealment had notable ability to improve survival and dispersal. Our study on juvenile Mojave desert tortoises showed that refuge availability or the distributions of habitat appropriate for concealment are important considerations for identifying translocation sites for species highly dependent on crypsis, camouflage, or other forms of habitat matching.

Journal of Applied Ecology↗

USGS2026

Evaluating harvest liberalization strategies on population dynamics of southern latitude temperate-breeding Canada geese

The recovery of the Canada goose ( Branta canadensis ) is one of North America's greatest conservation success stories. Today, continental abundance of temperate-breeding Canada geese (those breeding in southern Canada and lower 48 states in the United States) greatly exceeds historical levels. As a result of increased abundance, human–goose conflicts have also increased, ranging from private and agricultural property damage to human health concerns. Managers have primarily attempted to lower Canada goose populations using hunter harvest via liberalized hunting regulations (increased bag limits and total hunting days). To evaluate the effectiveness of harvest strategies for temperate-breeding Canada geese, managers need a better understanding of how liberalized hunting regulations affect population dynamics. We estimated survival and harvest probabilities, abundance, and recovery distribution of temperate-breeding Canada geese banded in Arkansas, USA, during 2005–2020. We found that adult harvest probabilities declined overall during the study and adult survival probabilities increased. Annual abundances of juvenile geese (≤1 year old) declined during the study, whereas there was no detectable trend in abundance of the adult population over time. Most Canada geese breeding in Arkansas were shot in Arkansas, indicating potential for population dynamics to be influenced largely by state-specific harvest regulations. However, our results suggest that harvest liberalization as a management tool may have limited capacity to further influence population dynamics of Canada geese. Declines in productivity and recruitment likely had a greater influence on the similar observed declines in juvenile and adult abundances, respectively, during our study. More research is needed to better understand the ecological mechanism affecting the population dynamics of Canada geese in both urban and rural environments.

Arkansas↗

USGS2023

Influence of invasive bigheaded carps on abundance of Gizzard Shad in the Tennessee River

Objective The Tennessee River basin and its cascade of reservoirs are home to some of the most diverse freshwater fish assemblages in the world. This unique system is threatened by the ongoing invasion of Silver Carp Hypophthalmichthys molitrix and Bighead Carp H. nobilis , hereafter referred to together as “bigheaded carps.” Bigheaded carps may directly compete for food resources with native clupeid species such as Gizzard Shad Dorosoma cepedianum , and this potential interaction could have damaging ecological and economic consequences. High relative abundances of Gizzard Shad are crucial to the Tennessee River food web and associated fisheries because of their role as a forage base for piscivorous species. Methods We analyzed a collection of annual gillnetting and electrofishing data spanning from 1990 to 2017 to test whether Gizzard Shad relative abundances have changed in Tennessee River reservoirs since the arrival of bigheaded carps. Result Our analyses indicated that Gizzard Shad abundances have been declining but were already declining prior to the arrival of bigheaded carps in the Tennessee River. Conclusion At this stage in the invasion, we could not attribute a cause-and-effect relationship to the inverse correlation between Gizzard Shad and bigheaded carps, but we advise continued monitoring of indicators of harmful interactions.

Alabama, Georgia, Kentucky, North Carolina, South ↗

USGS2013

Using landscape epidemiological models to understand the distribution of chronic wasting disease in the Midwestern USA

Animal movement across the landscape plays a critical role in the ecology of infectious wildlife diseases. Dispersing animals can spread pathogens between infected areas and naïve populations. While tracking free-ranging animals over the geographic scales relevant to landscape-level disease management is challenging, landscape features that influence gene flow among wildlife populations may also influence the contact rates and disease spread between populations. We used spatial diffusion and barriers to white-tailed deer gene flow, identified through landscape genetics, to model the distribution of chronic wasting disease (CWD) in the infected region of southern Wisconsin and northern Illinois, USA. Our generalized linear model showed that risk of CWD infection declined exponentially with distance from current outbreaks, and inclusion of gene flow barriers dramatically improved fit and predictive power of the model. Our results indicate that CWD is spreading across the Midwestern landscape from these two endemic foci, but spread is strongly influenced by highways and rivers that also reduce deer gene flow. We used our model to plot a risk map, providing important information for CWD management by identifying likely routes of disease spread and providing a tool for prioritizing disease monitoring and containment efforts. The current analysis may serve as a framework for modeling future disease risk drawing on genetic information to investigate barriers to spread and extending management and monitoring beyond currently affected regions.

Landscape Ecology↗

USGS2024

Discovery of giant and conventional magnetofossils bookending Cretaceous Oceanic Anoxic Event 2

Conventional magnetofossils are the remains of magnetotactic bacteria and giant magnetofossils are the remains of iron biomineralizing organisms that have not yet been identified. We report the oldest robust conventional and giant magnetofossil records, ~97 Ma, from marine sediments drilled in Holland Park, Virginia, USA. The Holland Park core records the Cenomanian-Turonian boundary and Oceanic-Anoxic Event 2 (OAE2). Magnetic datasets indicate single domain magnetite within the clay-rich sediments bookending OAE2. Electron microscopy images from these intervals highlight conventional and giant magnetofossil morphologies, including three potentially new giant magnetofossil morphologies: seeds, squash, and spades. There is an overall high abundance and morphological disparity of magnetofossils at Holland Park. However, we observe abundance, disparity, and preservation changes between the magnetofossil assemblages bookending OAE2. Our observations provide clues toward understanding the ecological thresholds of the enigmatic organisms that produce giant magnetofossils and evidence that magnetofossils may be widely distributed in the geologic record.

Virginia↗

USGS1957

Physical and ecologic features of the Sagadahoc Bay Tidal Flat, Georgetown, Maine

Sagadahoc Bay is open to the ocean at the south and has no significant fresh-water stream entering it. The intertidal zone is roughly a mile long by half a mile wide; most of it is made up of medium to fine sand, but organic-rich mud characterizes the head of the flat and the protected coves. Refraction-seismograph surveys showed that the bedrock surface lies 30 to 200 feet below the surface of the tidal flat and that it is irregular and fluted longitudinally. Repeated surveys indicate that the intertidal flat builds up and cuts down but is apparently in equilibrium with the present sea level. The sediment that fills the bay came from the sea. Waves and tidal currents tend to move it landward; storms accelerate this, or reverse the direction of movement, depending on the characteristics of the storm. Tidal- and wave-generated currents 0.1 foot above the bottom range in velocity from 0.35 to 0.82 foot per second on incoming tides and from 0.20 to 0.58 foot per second on ebbing tides. Incoming tides float large quantities of sand landward; ebbing tides never carry floating sand. Two distinctive and extensive Mya shell-pavement layers were found at depths of roughly 2 and 3 feet below the present surface of the tidal flat. The lower layer is approximately 1,000 years old according to a radiocarbon age determination of its Mya shells. It is suggested that these shell layers formed by sluicing away of a layer of sand about 2 feet thick, which had been thrown into loose packing by an earthquake at high tide. The earth shock induced a submarine slide of the sand in the outer part of the bay, which oversteepened the profile of the sand headward nearly to the head of the bay. Mya and other shells settled through the layer of quicksand while the sand was running out seaward. Living in the intertidal zone is the usual assemblage of clams, gastropods, crustaceans, worms, and seaweeds found on most northern New England tidal flats. The Mya arenaria population is decreasing, but in general myas are more numerous in the muddy areas than in the sandy areas. They grow more rapidly in the sand, though in the past decade there has been no significant renewal of the Mya population in the sandy part of the flat. Macoma balthica inhabits the muddy areas, whereas Ensis, Spisula, and Arctica are restricted to the low-tide zone and the shallow water below. Gemma gemma grows in great abundance in the sandy part of the flat but is rare in the muddy parts. Small shrimp and green crabs are common. The calcareous shells of these animals are all potential fossils, but the shrimp and crab exoskeletons are not, for their tests are rapidly decomposed in this environment. Other potential fossils are wood and bark, acorn caps, conifer cones, leaves of deciduous trees, seeds, and occasionally even grass stems and pieces of eel grass. All these are reasonably well preserved in the constant reducing environment that prevails an inch or two below the surface. An inverse relationship exists between the abundances of Mya arenaria and Gemma gemma. Cores and test pits show that gemmas are more numerous on the Sagadahoc flat now than they have been in the recent past (estimated 10–100 years). Gemmas are the dominant mollusk in the sandy part of the flat now that the myas are so extremely rare. The speculation is that gemmas became dominant largely because the Mya population was greatly reduced by intensive digging during and just after the last war and through depredations by green crabs. Possibly the warming climate has favored the gemmas selectively. The writer infers that the gemmas are a serious competitor of the myas and that the gemmas now starve out Mya spat, which is known to be carried into the bay each spring and fall. Two recommendations are made: (1) determining under controlled laboratory conditions the food requirements of Gemma and the density of Gemma population that will permit survival of Mya larvae from set through a stage that will assure maturation; and (2) killing off a large percentage of the Gemma population and observing whether or not a natural set of Mya occurs. Gemmas can be killed quickly under a flame shield such as is used to soften asphalt-sand mixtures in street paving. Inasmuch as gemmas are ovoviviparous they should not repopulate the flat rapidly.

Maine↗

USGS2010

Grassland birds wintering at U.S. Navy facilities in southern Texas

Grassland birds have undergone widespread decline throughout North America during the past several decades. Causes of this decline include habitat loss and fragmentation because of conversion of grasslands to cropland, afforestation in the East, brush and shrub invasion in the Southwest and western United States, and planting of exotic grass species to enhance forage production. A large number of exotic plant species, including grasses, have been introduced in North America, but most research on the effects of these invasions on birds has been limited to breeding birds, primarily those in northern latitudes. Research on the effects of exotic grasses on birds in winter has been extremely limited. This is the first study in southern Texas to examine and compare winter bird responses to native and exotic grasslands. This study was conducted during a period of six years (2003–2009) on United States Navy facilities in southern Texas including Naval Air Station–Corpus Christi, Naval Air Station–Kingsville, Naval Auxiliary Landing Field Waldron, Naval Auxiliary Landing Field Orange Grove, and Escondido Ranch, all of which contained examples of native grasslands, exotic grasslands, or both. Data from native and exotic grasslands were collected and compared for bird abundance and diversity; ground cover, vegetation density, and floristic diversity; bird and vegetation relationships; diversity of insects and arachnids; and seed abundance and diversity. Effects of management treatments in exotic grasslands were evaluated by comparing numbers and diversity of birds and small mammals in mowed, burned, and control areas. To determine bird abundance and bird species richness, birds were surveyed monthly (December–February) during the winters of 2003–2008 in transects (100 meter × 20 meter) located in native and exotic grasslands distributed at all five U.S. Navy facilities. To compare vegetation in native and exotic grasslands, vegetation characteristics were measured during 2003–2008 in the same transects used for bird surveys and included five measures of ground cover, plus estimates of plant species richness, vegetation density (visual obstruction) at two different heights, and shrub numbers. These data, plus seasonal rainfall, were then used to evaluate components of variation in native and exotic grasslands. Relations between total bird numbers and bird species richness with environmental variation in native and exotic grasslands were compared. To compare diversity of arthropods in native and exotic grasslands, insects and arachnids were collected using three different methodologies (standardized sweep-net, random sweep-net, and pitfall traps) during four seasons, (2005–2006), at Naval Air Station–Corpus Christi, Naval Auxiliary Landing Field Waldron, and Naval Air Station–Kingsville. To compare seed abundance and diversity between native and exotic grasslands, seeds were collected for two winters (2004–2006) at Naval Air Station–Corpus Christi and Naval Air Station–Kingsville. To evaluate effects of management on grassland vertebrates, abundance and diversity of birds and small mammals were estimated and compared in exotic grasses subjected to mowing, burning, or no active management (control) for one full year (2008–2009). Observations were made of 1,044 birds of 30 species in grassland transects during five winters. The Savannah Sparrow ( Passerculus sandwichensis ) was the most common bird, which, with 644 detections, accounted for 63 percent of all individuals identified to species. Meadowlarks ( Sturnella spp. ) and Le Conte’s Sparrows ( Ammodramus leconteii ) were the second (10 percent) and third (7 percent) most abundant bird species, respectively. Six of the seven most abundant species detected in grasslands were grassland species, and their numbers accounted for 87 percent of all birds, but 20 of the 30 species (67 percent) that used grasslands were not grassland species. Seven species observed in grassland transects during the study were Species of Conservation Concern: Le Conte’s Sparrow, Sedge Wren ( Cistothorus platensis ), Grasshopper Sparrow ( Ammodramus savannarum ), Long-billed Curlew ( Numenius americanus ), Sprague’s Pipit ( Anthus spragueii ), Cassin’s Sparrow ( Aimophila cassinii ), and Loggerhead Shrike ( Lanius ludovicianus ). Native grasslands consistently supported greater bird species richness than exotic grasslands. In one winter, exotic grasslands supported more birds than native grasslands. Native grasslands were determined to have more forb cover, more bare ground, and greater plant species richness than exotic grasslands, whereas exotic grasslands were characterized by more grass cover and relatively greater vegetation density during dry years. Not only did these individual measures differ between native and exotic grasslands, but components of variation also differed. In native grasslands, grass density and cover contributed more to variation, whereas in exotic grasslands, non-grass vegetation was a greater component of variation. Total bird numbers and bird species richness in native grasslands were related to the principal component that contained a measure of litter cover. Total bird numbers and bird species richness in exotic grasslands indicated no significant relationships with any of the principal components of variation. The two most common insect orders in native grasslands were Hymenoptera and Coleoptera, which accounted for 42 percent of all insects. The two most common insect orders in exotic grasslands were Hemiptera and Homoptera, which accounted for about 80 percent of all insects. Insect family richness was greater in exotic grasslands than in native grasslands in two of four seasons. Proportions of arachnid families were similar in native and exotic grasslands, but arachnid family richness was greater in exotic grasslands than in native grasslands. Abundance of seeds was greater in exotic than in native grasslands. However, seed diversity was greater in native grasslands than in exotic grasslands. Among the three types of management (mowed, burned, and control) applied to exotic grasses, birds were most abundant in the mowed area. Sedge Wrens, however, were never encountered in mowed sites. Meadowlarks were similarly abundant in all treatments, but Le Conte’s Sparrows were detected only in the control (unmanaged) area. Hispid cotton rats ( Sigmodon hispidus ) accounted for 93 percent of all rodent captures, with the number of captures peaking December through February. Hispid cotton rat numbers and total rodent numbers were greatest in control and pre-burn areas, and lowest in the mowed area. Mammal diversity, however, was greatest in the mowed habitat. Native and exotic grasslands differed essentially in all categories (bird numbers and diversity, vegetation characteristics, components of variation, diversity of insects and arachnids, and seed abundance and diversity) used to measure and compare them. This indicates that fundamental ecosystem processes have been altered after native grasslands have undergone invasion and ultimate domination by exotic grass species. Future research in Texas grassland ecosystems is essential because: 1) Texas sustains more area in grasslands than any other state or province in the Central Flyway; 2) Texas serves as the winter destination or migration pathway for hundreds of species of birds, including winter residents and Neotropical migrants; 3) ecology, distribution, and numbers of grassland birds wintering in southern latitudes of the United States remains poorly understood; and 4) climate change threatens to further accelerate advances of invading grass species.

Open-File Report↗

USGS2012

Near-field receiving water monitoring of trace metals and a benthic community near the Palo Alto Regional Water Quality Control Plant in south San Francisco Bay, California: 2011

Trace-metal concentrations in sediment and in the clam Macoma petalum (formerly reported as Macoma balthica), clam reproductive activity, and benthic macroinvertebrate community structure were investigated in a mudflat 1 kilometer south of the discharge of the Palo Alto Regional Water Quality Control Plant (PARWQCP) in South San Francisco Bay, Calif. This report includes the data collected by U.S. Geological Survey (USGS) scientists for the period January 2011 to December 2011. These data serve as the basis for the City of Palo Alto's Near-Field Receiving Water Monitoring Program, initiated in 1994. Following significant reductions in the late 1980s, silver (Ag) and copper (Cu) concentrations in sediment and M. petalum appear to have stabilized. Data for other metals, including chromium, mercury, nickel, selenium, and zinc, have been collected since 1994. Over this period, concentrations of these elements have remained relatively constant, aside from seasonal variation that is common to all elements. In 2011, concentrations of Ag and Cu in M. petalum varied seasonally in response to a combination of site-specific metal exposures and annual growth and reproduction, as reported previously. Seasonal patterns for other elements, including Cr, Hg, Ni, Se, and Zn, were generally similar in timing and magnitude as those for Ag and Cu. In 2011, metal concentrations in both sediments and clam tissue were among the lowest concentrations on record. This record suggests that regional-scale factors now largely control sedimentary and bioavailable concentrations of Ag and Cu, as well as other elements of regulatory interest, at the Palo Alto site. Analyses of the benthic community structure of a mudflat in South San Francisco Bay over a 38-year period show that changes in the community have occurred concurrent with reduced concentrations of metals in the sediment and in the tissues of the biosentinel clam, M. petalum, from the same area. Analysis of the M. petalum community shows increases in reproductive activity concurrent with the decline in metal concentrations in the tissues of this organism. Reproductive activity is presently stable (2011), with almost all animals initiating reproduction in the fall and spawning the following spring. The community has shifted from being dominated by several opportunistic species to a community where the species are more similar in abundance, a pattern that indicates a more stable community that is subjected to fewer stressors. In addition, two of the opportunistic species (Ampelisca abdita and Streblospio benedicti) that brood their young and live on the surface of the sediment in tubes have shown a continual decline in dominance coincident with the decline in metals; both species had short-lived rebounds in abundance in 2008, 2009, and 2010. Heteromastus filiformis (a subsurface polychaete worm that lives in the sediment, consumes sediment and organic particles residing in the sediment, and reproduces by laying its eggs on or in the sediment) showed a concurrent increase in dominance and, in the last several years before 2008, showed a stable population. H. filiformis abundance increased slightly in 2011. An unidentified disturbance occurred on the mudflat in early 2008 that resulted in the loss of the benthic animals, except for those deep-dwelling animals like Macoma petalum. Animals immediately returned to the mudflat in 2008, which was the first indication that the disturbance was not due to a persistent toxin or to anoxia. The reproductive mode of most species present in 2011 is reflective of the species that were available either as pelagic larvae or as mobile adults. Although egg layers were lower in number in this group, the authors hypothesize that these species will return slowly as more species move back into the area. The use of functional ecology was highlighted in the 2011 benthic community data, which show that the animals that have now returned to the mudflat are those that can respond successfully to a physical, nontoxic disturbance. Today, community data show a mix of animals that consume the sediment, filter feed, have pelagic larvae that must survive landing on the sediment, and brood their young. USGS scientists continue to observe the community's response to the 2008 defaunation event because it allows them to examine the response of the community to a natural disturbance (possible causes include sediment accretion or freshwater inundation) and compare this recovery to the long-term recovery observed in the 1970s when the decline in sediment pollutants was the dominating factor.

California↗