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At least 1,495 records · Page 83Linked to original sources
USGS2010

Petrography, mineralogy, and geochemistry of deep gravelly sands in the Eyreville B core, Chesapeake Bay impact structure

The ICDP–USGS Eyreville drill cores in the Chesapeake Bay impact structure reached a total depth of 1766 m and comprise (from the bottom upwards) basement-derived schists and granites/pegmatites, impact breccias, mostly poorly lithified gravelly sand and crystalline blocks, a granitic slab, sedimentary breccias, and postimpact sediments. The gravelly sand and crystalline block section forms an approximately 26 m thick interval that includes an amphibolite block and boulders of cataclastic gneiss and suevite. Three gravelly sands (basal, middle, and upper) are distinguished within this interval. The gravelly sands are poorly sorted, clast supported, and generally massive, but crude size-sorting and subtle, discontinuous layers occur locally. Quartz and K-feldspar are the main sand-size minerals and smectite and kaolinite are the principal clay minerals. Other mineral grains occur only in accessory amounts and lithic clasts are sparse (only a few vol%). The gravelly sands are silica rich (~80 wt% SiO 2 ). Trends with depth include a slight decrease in SiO 2 and slight increase in Fe 2 O 3 . The basal gravelly sand (below the cataclasite boulder) has a lower SiO 2 content, less K-feldspar, and more mica than the higher sands, and it contains more lithic clasts and melt particles that are probably reworked from the underlying suevite. The middle gravelly sand (below the amphibolite block) is finer-grained, contains more abundant clay minerals, and displays more variable chemical compositions than upper gravelly sand (above the block). Our mineralogical and geochemical results suggest that the gravelly sands are avalanche deposits derived probably from the nonmarine Potomac Formation in the lower part of the target sediment layer, in contrast to polymict diamictons higher in the core that have been interpreted as ocean-resurge debris flows, which is in agreement with previous interpretations. The mineralogy and geochemistry of the gravelly sands are typical for a passive continental margin source. There is no discernible mixing with marine sediments (no glauconite or Paleogene marine microfossils noted) during the impact remobilization and redeposition. The unshocked amphibolite block and cataclasite boulder might have originated from the outer parts of the transient crater.

Virginia↗
USGS2015

The first description of oarfish Regalecus glesne ( Regalecus russellii Cuvier 1816) ageing structures

Despite being a large, conspicuous teleost with a worldwide tropical and temperate distribution, the giant oarfish Regalecus spp. remain very rare fish species in terms of scientific sampling. Subsequently, very little biological information is known about Regalecus spp. and almost nothing has been concluded in the field of age and growth (Roberts, 2012). No studies of otoliths or temporal (annual) markings on any hard structures have been reported, and to our knowledge otoliths have never been recovered from any specimens (Tyson Roberts, personal communication),although a few texts do provide illustrations of Regalecus sp. otoliths (Lin and Chang, 2012; Nolf, 2013). Further inferential difficulty comes from the fact that age and growth studies of any Lampridiforme species are rare. Lampris guttatus is perhaps the only Lampridiforme species for which any biological information has been reported(Francis et al., 2004), which stems from the species commercial value. In order to begin understanding any species (for later purposes of management, conservation, etc.), basic biological information is needed. In the present study, we examine not only the first Regalecus russellii otolith, but provide suggestions toward future work that should direct data collection that can be used to generate basic biological information for this species.

Journal of Applied Ichthyology↗
USGS2015

Shaping species with ephemeral boundaries: The distribution and genetic structure of desert tortoise ( Gopherus morafkai ) in the Sonoran Desert region

Aim We examine the role biogeographical features played in the evolution of Morafka's desert tortoise ( Gopherus morafkai ) and test the hypothesis that G. morafkai maintains genetically distinct lineages associated with different Sonoran Desert biomes. Increased knowledge of the past and present distribution of the Sonoran Desert region's biota provides insight into the forces that drive and maintain its biodiversity. Location Sonoran Desert biogeographical region; Sonora and Sinaloa, Mexico and Arizona, USA. Methods We examined wild tortoises from Mexico ( n = 155) and Arizona ( n = 78), spanning their known distribution. We used mtDNA sequences to reconstruct matrilineal relationships and 25 microsatellite (STR) loci for Bayesian analyses of gene flow. We performed clinal analyses on both mtDNA and STR loci to determine the position and amount of introgression where lineages co-occur. We used GIS to assess the association of genetic structuring with ecological features. We used these data in a hypothesis-driven approach to assess different models of how genetic diversity is maintained and distributed in G. morafkai . Results Gopherus morafkai was found to comprise genetically and geographically distinct ‘Sonoran’ and ‘Sinaloan’ lineages. Both lineages occurred in a relatively narrow zone of overlap in Sinaloan thornscrub, where it transitions into Sonoran desertscrub. Limited introgression occurred at the contact zone. The best-fit model suggests that these lineages diverged in parapatry where the distribution of genotypes is environment-dependent and introgression is inhibited by exogenous selection. Main conclusions The historically shifting ecotone between tropical deciduous forest and Sonoran desertscrub appears to be a boundary that fostered divergence between parapatric lineages of tortoises. The sharp genetic cline between the two lineages suggests that periods of isolation in temporary refugia due to Pleistocene climatic cycling influenced divergence. Despite incomplete reproductive isolation, the Sonoran and Sinaloan lineages of G. morafkai are on separate evolutionary trajectories.

Arizona, Sonora↗
USGS2019

Assemblage structure, vertical distributions and stable‐isotope compositions of anguilliform leptocephali in the Gulf of Mexico

In August 2007, October 2008 and September–October 2010, 241 Tucker trawl and plankton net tows were conducted at the surface to depths of 1377 m at six locations in the northern and eastern Gulf of Mexico (GOM) to document leptocephalus diversity and determine how assemblage structure, larval size, abundance and isotopic signatures differ across the region and with depth. Overall, 2696 leptocephali representing 59 distinct taxa from 10 families were collected. Five families accounted for 96% of the total catch with Congridae and Ophichthidae being the most abundant. The top four most abundant species composed 59% of the total catch and included: Ariosoma balearicum , Paraconger caudilimbatus , Rhynchoconger flavus and Ophichthus gomesii . Four anguilliform species not previously documented in the GOM as adults or leptocephali were collected in this study, including Monopenchelys acuta , Quassiremus ascensionis , Saurenchelys stylura and one leptocephalus only known from its larval stage, Leptocephalus proboscideus . Leptocephalus catches were significantly greater at night than during the day. Catches at night were concentrated in the upper 200 m of the water column and significantly declined with increasing depth. Leptocephali abundances and assemblages were significantly different between sites on the upper continental slope ( c . 500 m depth) and sites on the middle to lower continental slope ( c . 1500–2300 m). Sites on the lower continental slope had a mixture of deep‐sea demersal, bathypelagic and coastal species, whereas upper‐slope sites contained several numerically dominant species ( e.g ., A. balearicum , P. caudilimbatus ) that probably spawn over the continental shelf and upper slope of the GOM. Standard lengths of the four dominant species differed between sites and years, indicating heterochronic reproduction and potential larval source pools within and outside of the GOM. Stable‐isotope analyses (δ 13 C and δ 15 N) conducted on 185 specimens from six families revealed that leptocephali had a wide range of isotopic values at the family and size‐class levels. Species in the families Muraenidae, Congridae and Ophichthidae had similar δ 15 N values compared with the broad range of δ 15 N values seen in the deep‐sea families Nemichthyidae, Nettastomatidae and Synaphobranchidae. Stable‐isotope values were variably related to length, with δ 15 N values being positively size correlated in ophichthids and δ 13 C values being negatively size correlated in A. balearicum and P. caudilimbatus . Results suggest that leptocephali feed in various water depths and masses, and on different components of POM, which could lead to niche partitioning. Ecological aspects of these important members of the plankton community provide insight into larval connectivity in the GOM as well as the early life history of Anguilliformes.

Gulf of Mexico↗
USGS2024

Population genetic structure and demographic history reconstruction of introduced flathead catfish (Pylodictis olivaris) in two US Mid-Atlantic rivers

Population genetic analysis of invasive populations can provide valuable insights into the source of introductions, pathways for expansion, and their demographic histories. Flathead catfish ( Pylodictis olivaris ) are a prolific invasive species with high fecundity, long-distance dispersal, and piscivorous feeding habits that can lead to declines in native fish populations. In this study, we analyse the genetics of invasive P. olivaris in the Mid-Atlantic region to assess their connectivity and attempt to reconstruct the history of introduced populations. Based on an assessment across 13 microsatellite loci, P. olivaris from the Susquehanna River system ( N = 537), Schuylkill River ( N = 33), and Delaware River ( N = 1) have low genetic diversity (global H obs = 0.504), although we detected no evidence of substantial inbreeding ( F IS = −0.083 to 0.022). P. olivaris from these different river systems were genetically distinct, suggesting separate introductions. However, population structure was much weaker within each river system and exhibited a pattern of high connectivity, with some evidence of isolation by distance. P. olivaris from the Susquehanna and Schuylkill rivers showed evidence for recent genetic bottlenecks, and demographic models were consistent with historical records, which suggest that populations were established by recent founder events consisting of a small number of individuals. Our results show the risk posed by small introductions of P. olivaris , which can spread widely once a population is established, and highlight the importance of prevention and sensitive early detection methods to prevent the spread of P. olivaris in the future.

Maryland, New Jersey, Pennsylvania↗
USGS2016

Coesite in suevites from the Chesapeake Bay impact structure

The occurrence of coesite in suevites from the Chesapeake Bay impact structure is confirmed within a variety of textural domains in situ by Raman spectroscopy for the first time and in mechanically separated grains by X-ray diffraction. Microtextures of coesite identified in situ investigated under transmitted light and by scanning electron microscope reveal coesite as micrometer-sized grains (1–3 μm) within amorphous silica of impact-melt clasts and as submicrometer-sized grains and polycrystalline aggregates within shocked quartz grains. Coesite-bearing quartz grains are present both idiomorphically with original grain margins intact and as highly strained grains that underwent shock-produced plastic deformation. Coesite commonly occurs in plastically deformed quartz grains within domains that appear brown (toasted) in transmitted light and rarely within quartz of spheroidal texture. The coesite likely developed by a mechanism of solid-state transformation from precursor quartz. Raman spectroscopy also showed a series of unidentified peaks associated with shocked quartz grains that likely represent unidentified silica phases, possibly including a moganite-like phase that has not previously been associated with coesite.

Chesapeake Bay↗
USGS2017

Persistence of historical population structure in an endangered species despite near-complete biome conversion in California's San Joaquin Desert

Genomic responses to habitat conversion can be rapid, providing wildlife managers with time-limited opportunities to enact recovery efforts that use population connectivity information that reflects predisturbance landscapes. Despite near-complete biome conversion, such opportunities may still exist for the endemic fauna and flora of California's San Joaquin Desert, but comprehensive genetic data sets are lacking for nearly all species in the region. To fill this knowledge gap, we studied the rangewide population structure of the endangered blunt-nosed leopard lizard Gambelia sila , a San Joaquin Desert endemic, using restriction site-associated DNA (RAD), microsatellite and mtDNA data to test whether admixture patterns and estimates of effective migration surfaces (EEMS) can identify land areas with high population connectivity prior to the conversion of native xeric habitats. Clustering and phylogenetic analyses indicate a recent shared history between numerous isolated populations and EEMS reveals latent signals of corridors and barriers to gene flow over areas now replaced by agriculture and urbanization. Conflicting histories between the mtDNA and nuclear genomes are consistent with hybridization with the sister species G. wislizenii , raising important questions about where legal protection should end at the southern range limit of G. sila . Comparative analysis of different data sets also adds to a growing list of advantages in using RAD loci for genetic studies of rare species. We demonstrate how the results of this work can serve as an evolutionary guidance tool for managing endemic, arid-adapted taxa in one of the world's most compromised landscapes.

California↗
USGS1960

Crystal structure refinement of reedmergnerite, the boron analog of albite

Ordering of boron in a feldspar crystallographic site T 1 (0) has been found in reedmergnerite, which has silicon-oxygen and sodium-oxygen distances comparable to those in isostructural low albite. If a simple ionic model is assumed, calculated bond strengths yield a considerable charge imbalance in reedmergnerite, an indication of the inadequacy of the model with respect to these complex structures and of the speculative nature of conclusions based on such a model.

Science↗
USGS1963

Boron-oxygen polyanion in the crystal structure of tunellite

The crystal structure of tunellite, SrO·3B 2 O 3 ·4H 2 O, with infinite sheets of composition n[B 6 O 9 (OH) 2 ] 2- , has cations and water molecules in the spaces within the sheets. Adjacent sheets are held together by hydrogen bonding through the water molecules. The boron-oxygen polyanions provide the first example in hydrated borate crystals of one oxygen linked to three borons.

Science↗
USGS1974

Sea otters: Their role in structuring nearshore communities

A comparison of western Aleutian Islands with and without sea otter populations shows that this species is important in determining littoral and sublittoral community structure. Sea otters control herbivorous invertebrate populations. Removal of sea otters causes increased herbivory and ultimately results in the destruction of macrophyte associations. The observations suggest that sea otter reestablishment indirectly affects island fauna associated with macrophyte primary productivity.

Alaska↗
USGS1993

The Manson Impact Structure: 40Ar/39Ar age and its distal impact ejecta in the Pierre Shale in southeastern South Dakota

The 40 Ar/ 39 Ar ages of a sanidine clast from a melt-matrix breccia of the Manson, Iowa, impact structure (MIS) indicate that the MIS formed 73.8 ± 0.3 million years ago (Ma) and is not coincident with the Cretaceous-Tertiary boundary (64.43 ± 0.05 Ma). The MIS sanidine is 9 million years older than 40 Ar/ 39 Ar age spectra of MIS shock-metamorphosed microcline and melt-matrix breccia interpreted earlier to be 64 to 65 Ma. Grains of shock-metamorphosed quartz, feldspar, and zircon were found in the Crow Creek Member (upper Campanian) at a biostratigraphic level constrained by radiometric ages in the Pierre Shale of South Dakota that are consistent with the 40 Ar/ 39 Ar age of 73.8 ± 0.3 Ma for MIS reported herein.

South Dakota↗
USGS2003

Crystal structure and chemistry of lithium-bearing trioctahedral micas-3T

Chemical analyses and crystal structure refinements were performed on lithian siderophyllite-3T crystals from granitic pegmatites of the anorogenic Pikes Peak batholith (Colorado) to characterize the crystal chemistry and relations with trioctahedral lithium-bearing micas showing different stacking sequences. Chemical data show that the studied samples fall on the siderophyllite-polylithionite join, closer to the siderophyllite end-member. Single-crystal X-ray refinements were carried out on three samples (two of which were taken from core and rim of the same crystal) in space-group P3 1 12 (the agreement factor, Robs, varies between 0.034 and 0.036). Mean bond distances and mean electron counts of M1, M2 and M3 octahedral sites indicate an ordered cation distribution with M1 and M3 positions substantially larger than M2. In the sample with the largest iron content, the M2 mean electron count increases as well as the mean distance, whereas remains smaller than or . The tetrahedral cation-oxygen atom mean distances range from 1.614 to 1.638 A and from 1.663 to 1.678 A for T1 and T2 sites, respectively, being consistent with Al 3+ enrichment in the T2 sites. The tetrahedral rotation angle, α, is generally small (3.1 ≤ α ≤ 4.6) and decreases with siderophyllite content. As Fe increases, the T1 tetrahedron becomes flatter (112.4 ≤ t1 ≤ 110.5??), whereas T2 tetrahedron distortion appears unchanged (110.7 ≤ T2 ≤ 110.9).

European Journal of Mineralogy↗
USGS1978

Tectolinear interpretation of a 1:5,000,000 Landsat-1 mosaic compared with the structure of central and eastern United States

The pattern of lineaments and curvilinear features interpreted from a 1:5,000,000 mosaic of satellite images (Landsat-1 was superimposed on a simplified version of the Geological Map of the United States, 1:2,500,000 scale, showing the structural scheme of Central and Eastern United States. A comparison of the above two patterns, shown in Fig. 1, is presented in this paper.

Global Tectonics and Metallogeny↗
USGS2006

Bacterial community structure in the hyperarid core of the Atacama Desert, Chile

Soils from the hyperarid Atacama Desert of northern Chile were sampled along an east-west elevational transect (23.75 to 24.70°S) through the driest sector to compare the relative structure of bacterial communities. Analysis of denaturing gradient gel electrophoresis (DGGE) profiles from each of the samples revealed that microbial communities from the extreme hyperarid core of the desert clustered separately from all of the remaining communities. Bands sequenced from DGGE profiles of two samples taken at a 22-month interval from this core region revealed the presence of similar populations dominated by bacteria from the Gemmatimonadetes and Planctomycetes phyla.

Atacama Desert↗
USGS1984

Multilocus electrophoretic assessment of the genetic structure and diversity of Yersinia ruckeri

Multilocus isoenzyme electrophoresis was used to screen 47 field isolates of Yersinia ruckeri for electrophoretic variation at 15 enzyme loci. Only four electrophoretic types were observed, thus indicating that the genetic structure of Y. ruckeri is clonal. Forty-two isolates were of one electrophoretic type, a reflection of the low amount of genetic diversity extant in this species. Although sorbitol fermentation has been considered to be indicative of a second biotype, no significant gene frequency differences were found between the group of 20 isolates that readily used sorbitol as the sole carbon source and the group of 27 that did not.

Applied and Environmental Microbiology↗
USGS2004

Structural and spectral features of selenium nanospheres produced by Se-respiring bacteria

Certain anaerobic bacteria respire toxic selenium oxyanions and in doing so produce extracellular accumulations of elemental selenium [Se(0)]. We examined three physiologically and phylogenetically diverse species of selenate- and selenite-respiring bacteria, Sulfurospirillum barnesii, Bacillus selenitireducens, and Selenihalanaerobacter shriftii, for the occurrence of this phenomenon. When grown with selenium oxyanions as the electron acceptor, all of these organisms formed extracellular granules consisting of stable, uniform nanospheres (diameter, ???300 nm) of Se(0) having monoclinic crystalline structures. Intracellular packets of Se(0) were also noted. The number of intracellular Se(0) packets could be reduced by first growing cells with nitrate as the electron acceptor and then adding selenite ions to washed suspensions of the nitrate-grown cells. This resulted in the formation of primarily extracellular Se nanospheres. After harvesting and cleansing of cellular debris, we observed large differences in the optical properties (UV-visible absorption and Raman spectra) of purified extracellular nanospheres produced in this manner by the three different bacterial species. The spectral properties in turn differed substantially from those of amorphous Se(0) formed by chemical oxidation of H2Se and of black, vitreous Se(0) formed chemically by reduction of selenite with ascorbate. The microbial synthesis of Se(0) nanospheres results in unique, complex, compacted nanostructural arrangements of Se atoms. These arrangements probably reflect a diversity of enzymes involved in the dissimilatory reduction that are subtly different in different microbes. Remarkably, these conditions cannot be achieved by current methods of chemical synthesis.

Applied and Environmental Microbiology↗
USGS2004

Diazotrophic community structure and function in two successional stages of biological soil crusts from the Colorado Plateau and Chihuahuan Desert

The objective of this study was to characterize the community structure and activity of N 2 -fixing microorganisms in mature and poorly developed biological soil crusts from both the Colorado Plateau and Chihuahuan Desert. Nitrogenase activity was approximately 10 and 2.5 times higher in mature crusts than in poorly developed crusts at the Colorado Plateau site and Chihuahuan Desert site, respectively. Analysis of nifH sequences by clone sequencing and the terminal restriction fragment length polymorphism technique indicated that the crust diazotrophic community was 80 to 90% heterocystous cyanobacteria most closely related to Nostoc spp. and that the composition of N 2 -fixing species did not vary significantly between the poorly developed and mature crusts at either site. In contrast, the abundance of nifH sequences was approximately 7.5 times greater (per microgram of total DNA) in mature crusts than in poorly developed crusts at a given site as measured by quantitative PCR. 16S rRNA gene clone sequencing and microscopic analysis of the cyanobacterial community within both crust types demonstrated a transition from a Microcoleus vaginatus -dominated, poorly developed crust to mature crusts harboring a greater percentage of Nostoc and Scytonema spp. We hypothesize that ecological factors, such as soil instability and water stress, may constrain the growth of N 2 -fixing microorganisms at our study sites and that the transition to a mature, nitrogen-producing crust initially requires bioengineering of the surface microenvironment by Microcoleus vaginatus .

New Mexico, Utah↗
USGS1975

Structural proteins of two salmonid rhabdoviruses

Purified infectious hematopoietic necrosis (IHN) virus and the virus of haemorrhagic septicaemia (VHS) (Egtved virus) each contain five structural proteins which were designated L, G, N, M-1, and M-2. The IHN viral polypeptides have molecular weights estimated to be 157,000, 72,000, 40,000, 25,000 and 20,000, respectively, whereas those of VHS viral polypeptides are estimated to be 157,000 74,000, 41,000, 21,500, and 19,000, respectively. The carbohydrate composition of the glycoprotein (G) was confirmed by demonstrating selective incorporation of [3H]glucosamine into the designated G protein of both viruses. Phosphoproteins were identified by incorporation of [32P]orthophosphate into the N and M-1 proteins of IHN virus and into the N protein of VHS virus. The glycoprotein of each virus was selectively solubilized by treatment with Triton X-100 in low salt buffer, whereas the M-1, and M-2 proteins along with the G protein were solubilized by Ttition X-100 in 0.43 M NaCl. The protein composition of the salmonid rhabdoviruses resembles that of the rabies virus group more closely than the vesicular stomatitis virus group.

Journal of Virology↗