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Estimating discharge and nonpoint source nitrate loading to streams from three end‐member pathways using high‐frequency water quality data

The myriad hydrologic and biogeochemical processes taking place in watersheds occurring across space and time are integrated and reflected in the quantity and quality of water in streams and rivers. Collection of high‐frequency water quality data with sensors in surface waters provides new opportunities to disentangle these processes and quantify sources and transport of water and solutes in the coupled groundwater‐surface water system. A new approach for separating the streamflow hydrograph into three components was developed and coupled with high‐frequency nitrate data to estimate time‐variable nitrate loads from chemically dilute quick flow, chemically concentrated quick flow, and slowflow groundwater end‐member pathways for periods of up to 2 years in a groundwater‐dominated and a quick‐flow‐dominated stream in central Wisconsin, using only streamflow and in‐stream water quality data. The dilute and concentrated quick flow end‐members were distinguished using high‐frequency specific conductance data. Results indicate that dilute quick flow contributed less than 5% of the nitrate load at both sites, whereas 89 ± 8% of the nitrate load at the groundwater‐dominated stream was from slowflow groundwater, and 84 ± 25% of the nitrate load at the quick‐flow‐dominated stream was from concentrated quick flow. Concentrated quick flow nitrate concentrations varied seasonally at both sites, with peak concentrations in the winter that were 2–3 times greater than minimum concentrations during the growing season. Application of this approach provides an opportunity to assess stream vulnerability to nonpoint source nitrate loading and expected stream responses to current or changing conditions and practices in watersheds.

Water Resources Research↗

Simulation of rapid ecological change in Lake Ontario

Lower trophic level processes are integral to proper functioning of large aquatic ecosystems and have been disturbed in Lake Ontario by various stressors including exotic species. The invasion of benthic habitats by dreissenid mussels has led to systemic changes and native faunal declines. Size-dependent physiological rates, spatial differences and connectivity, competition, and differential population dynamics among invertebrate groups contributed to the change and system complexity. We developed a spatially explicit, individual-based mechanistic model of the benthic ecosystem in Lake Ontario, with coupling to the pelagic system, to examine ecosystem dynamics and effects of dreissenid mussel invasion and native fauna losses. Benthic organisms were represented by functional groups; filter-feeders (i.e., dreissenid mussels), surface deposit-feeders (e.g., native amphipod Diporeia spp.), and deposit-feeders (e.g., oligochaetes and other burrowers). The model was stable, represented ecological structure and function effectively, and reproduced observed effects of the mussel invasion. Two hypotheses for causes of Diporeia loss, competition or disease-like mortality, were tested. Simple competition for food did not explain observed declines in native surface deposit-feeders during the filter-feeder invasion. However, the elevated mortality scenario supports a disease-like cause for loss of the native amphipod, with population changes in various lake areas and altered benthic biomass transfers. Stabilization of mussel populations and possible recovery of the native, surface-deposit feeding amphipod were predicted. Although further research is required on forcing functions, model parameters, and natural conditions, the model provides a valuable tool to help managers understand the benthic system and plan for response to future disruptions.

Lake Ontario↗

Changes in aquatic prey resources in response to estuary restoration in Willapa Bay, southwestern Washington

Executive Summary The ongoing restoration of more than 200 hectares of estuarine habitat at Willapa National Wildlife Refuge, southwestern Washington, is expected to benefit a variety of species, including salmonids that use estuarine and tidal marshes as rearing and feeding areas as well as migratory waterbirds. During March–June 2014 and 2015, U.S. Geological Survey Western Ecological Research Center (WERC) initiated a study to assess aquatic prey resources, in coordination with a separate but parallel fish study done by the Columbia River Estuary Study Taskforce. WERC collected data on environmental variables and invertebrate community structure, and the taskforce provided salmonid diet data at restored (Lewis Stream and Porter Point) and reference (Greenhead Slough and Ellsworth Creek) sites. We analyzed these data to determine the functional capacity of the estuary for supporting invertebrate prey resources for fish following restoration. The results of our analyses were as follows: Water temperatures were roughly 0.74 degrees Celsius warmer in 2015 than in 2014 at all sites, with potential consequences for salmonid bioenergetics in June and July. Mudflat was colonized by low marsh species such as pickleweed from 2014 to 2015 at restored Lewis Stream. Vegetation community structure remained stable at Greenhead Slough, Ellsworth Creek, and Porter Point in both years, and consisted of halophilic sedges (for example, Carex lyngbyei ) and saltgrass ( Distichlis spicata ). Benthic invertebrate community structure consisted of Polychaeta, Nematoda, Oligochaeta, Amphipoda, and Diptera larvae, all of which contribute to the foraging capacity of juvenile salmon and migratory shorebirds. Benthic invertebrate biomass increased as much as 30-fold at some sites from 2014 to 2015. Terrestrial invertebrate community structure was dominated by Dipteran flies, especially at restored Lewis Stream, which primarily was unvegetated in 2014. Other key taxa included Hemiptera, Arachnida, and Collembola. Aquatic invertebrate prey consisted of planktonic taxa and terrestrial invertebrate drift that fell into the water column from overhanging vegetation. The restored Porter Point had markedly fewer Copepoda, but had the highest levels of neuston biomass primarily due to Dipteran drift (terrestrial flies that fell into the water column). Average proportion similarity index (PSI) values between salmon diet and invertebrate prey availability were relatively low at all sites (<0.1), but were highest at the restored Lewis Stream (0.105±0.102). This likely was influenced by the predominance of Diptera in the surrounding habitat and in the diets of juvenile Chinook and chum salmon ( Oncorhynchus tshawytscha and O. keta , respectively). The invasive New Zealand mud snail ( Potamopyrgus antipodarum ) was detected at both Lewis Stream (8 out of 34 aquatic and benthic samples) and Porter Point (1 out of 32 aquatic and benthic samples) restoration sites, but not at reference sites Greenhead Slough or Ellsworth Creek. This invasive species has been observed throughout the Pacific Northwest coastline is not palatable to most fish (including salmonids) and may even be detrimental to some fish species. Although invertebrate communities differed between restored and reference sites, invertebrate biomass at the restored Lewis Stream and Porter Point was like or exceeded that of reference sites Greenhead Slough and Ellsworth Creek. The restored sites are still in the early phases of restoration and succession, but our study suggests they have the capacity to support foraging wildlife species such as salmonids.

Washington↗

History of surface displacements at the Yellowstone Caldera, Wyoming, from leveling surveys and InSAR observations, 1923-2008

Modern geodetic studies of the Yellowstone caldera, Wyoming, and its extraordinary tectonic, magmatic, and hydrothermal systems date from an initial leveling survey done throughout Yellowstone National Park in 1923 by the U.S. Coast and Geodetic Survey. A repeat park-wide survey by the U.S. Geological Survey (USGS) and the University of Utah during 1975-77 revealed that the central part of the caldera floor had risen more than 700 mm since 1923, at an average rate of 14&plusmn;1 mm/yr. From 1983 to 2007, the USGS conducted 15 smaller surveys of a single level line that crosses the northeast part of the caldera, including the area where the greatest uplift had occurred from 1923 to 1975-77. The 1983 and 1984 surveys showed that uplift had continued at an average rate of 22&plusmn;1 mm/yr since 1975-77, but no additional uplift occurred during 1984-85 (-2&plusmn;5 mm/yr), and during 1985-95 the area subsided at an average rate of 19&plusmn;1 mm/yr. The change from uplift to subsidence was accompanied by an earthquake swarm, the largest ever recorded in the Yellowstone area (as of March 2012), starting in October 1985 and located near the northwest rim of the caldera. Interferometric synthetic aperture radar (InSAR) images showed that the area of greatest subsidence migrated from the northeast part of the caldera (including the Sour Creek resurgent dome) during 1992-93 to the southwest part (including the Mallard Lake resurgent dome) during 1993-95. Thereafter, uplift resumed in the northeast part of the caldera during 1995-96, while subsidence continued in the southwest part. The onset of uplift migrated southwestward, and by mid-1997, uplift was occurring throughout the entire caldera (essentially rim to rim, including both domes). Consistent with these InSAR observations, leveling surveys indicated 24&plusmn;3 mm of uplift in the northeast part of the caldera during 1995-98. The beginning of uplift was coincident with or followed shortly after an earthquake swarm near the north caldera rim during June-July 1995 - the strongest swarm since 1985. Rather than a single deformation source as inferred from leveling surveys, the InSAR images revealed two distinct sources - one beneath each resurgent dome on the caldera floor. Subsequently, repeated GPS surveys (sometimes referred to as "campaign" surveys to distinguish them from continuous GPS observations) and InSAR images revealed a third deformation source beneath the north caldera rim. The north-rim source started to inflate in or about 1995, resulting in as much as 80 mm of surface uplift by 2000. Meanwhile, motion of the caldera floor changed from uplift to subsidence during 1997-8. The north rim area rose, while the entire caldera floor (including both domes) subsided until 2002, when both motions paused. Uplift in the northeast part of the caldera resumed in mid-2004 at a historically unprecedented rate of as much as 70 mm/yr, while the north rim area subsided at a lesser rate. Resurveys of the level line across the northeast part of the caldera in 2005 and 2007 indicated the greatest average uplift rate since the initial survey in 1923-53&plusmn;3 mm/yr. Data from a nearby continuous GPS (CGPS) station showed that the uplift rate slowed to 40-50 mm/yr during 2007-8 and to near zero by September 2009. Following an intense earthquake swarm during January-February 2010, this one near the northwest caldera rim and the strongest since the 1985 swarm in the same general area, CGPS stations recorded the onset of subsidence throughout the entire caldera. Any viable model for the cause(s) of ground deformation at Yellowstone should account for (1) three distinct deformation sources and their association with both resurgent domes and the north caldera rim; (2) interplay among these sources, as suggested by the timing of major changes in deformation mode; (3) migration of the area of greatest subsidence or uplift from the northeast part of the caldera to the southwest part during 1992-95 and 1995-97, respectively; (4) repeated cycles of uplift and subsidence and sudden changes from uplift to subsidence or vice versa; (5) spatial and temporal relationships between changes in deformation mode and strong earthquake swarms; and (6) lateral dimensions of all three deforming areas that indicate source depths in the range of 5 to 15 km. We prefer a conceptual model in which surface displacements at Yellowstone are caused primarily by variations in the flux of basaltic magma into the crust beneath the caldera. Specifically, we envision a magmatic conduit system beneath the northeast part of the caldera that supplies basalt from a mantle source to an accumulation zone at 5-10 km depth, perhaps at a rheological boundary within a crystallizing rhyolite body remnant from past eruptions. Increases in the magma flux favor uplift of the caldera and decreases favor subsidence. A delicate equilibrium exists among the mass and heat flux from basaltic intrusions, heat and volatile loss from the crystallizing rhyolite body, and the overlying hydrothermal system. In the absence of basalt input, steady subsidence occurs mainly as a result of fluid loss from crystallizing rhyolite. At times when a self-sealing zone in the deep hydrothermal system prevents the escape of magmatic fluid, the resulting pressure increase contributes to surface uplift within the caldera; such episodes end when the seal ruptures during an earthquake swarm. To account for the north rim deformation source, we propose that magma or fluid exsolved from magma episodically escapes the caldera system at the three-way structural intersection of (1) the northern caldera boundary, (2) an active seismic belt to the north-northwest that is associated with the Hebgen Lake fault zone, and (3) the Norris - Mammoth corridor - a zone of faults, volcanic vents, and thermal activity that strikes north from the north rim of the caldera near Norris Geyser Basin to Mammoth Hot Springs near the northern boundary of Yellowstone National Park. Increased fluid flux out of the caldera by way of this intersection favors subsidence of the north rim area, and decreased flux favors uplift. This model does not account for poroelastic and thermoelastic effects, nonelastic rheology, or heat and mass transport in the hot and wet subcaldera crust. Such effects almost surely play a role in caldera deformation and are an important topic of ongoing research.

Wyoming↗

Imaging the transition from Aleutian subduction to Yakutat collision in central Alaska, with local earthquakes and active source data

In southern and central Alaska the subduction and active volcanism of the Aleutian subduction zone give way to a broad plate boundary zone with mountain building and strike-slip faulting, where the Yakutat terrane joins the subducting Pacific plate. The interplay of these tectonic elements can be best understood by considering the entire region in three dimensions. We image three-dimensional seismic velocity using abundant local earthquakes, supplemented by active source data. Crustal low-velocity correlates with basins. The Denali fault zone is a dominant feature with a change in crustal thickness across the fault. A relatively high-velocity subducted slab and a low-velocity mantle wedge are observed, and high Vp/Vs beneath the active volcanic systems, which indicates focusing of partial melt. North of Cook Inlet, the subducted Yakutat slab is characterized by a thick low-velocity, high-Vp/Vs, crust. High-velocity material above the Yakutat slab may represent a residual older slab, which inhibits vertical flow of Yakutat subduction fluids. Alternate lateral flow allows Yakutat subduction fluids to contribute to Cook Inlet volcanism and the Wrangell volcanic field. The apparent northeast edge of the subducted Yakutat slab is southwest of the Wrangell volcanics, which have adakitic composition consistent with melting of this Yakutat slab edge. In the mantle, the Yakutat slab is subducting with the Pacific plate, while at shallower depths the Yakutat slab overthrusts the shallow Pacific plate along the Transition fault. This region of crustal doubling within the shallow slab is associated with extremely strong plate coupling and the primary asperity of the Mw 9.2 great 1964 earthquake. Copyright 2006 by the American Geophysical Union.

Alaska↗

Applying U.S. Geological Survey science to understand effects to water supply in the Upper Colorado River Basin

Introduction The Colorado River Basin is a vital source of water to more than 40 million people in the Western United States and Mexico, including in major cities like Denver, Las Vegas, Phoenix, Tucson, Los Angeles, and San Diego, and supports irrigation for about 16,000 square kilometers of agricultural land. Since 2000, the southwestern United States has been unusually dry due to low precipitation and warm air temperatures, contributing to extreme water level declines of the two large reservoirs on the Colorado River, Lake Mead and Lake Powell. In 2021, these reservoirs reached their lowest levels on record, resulting in unprecedented restrictions on water usage in the basin. As much as 90 percent of the annual runoff in the Colorado River Basin originates in areas upstream from Lake Powell (hereafter, these areas will be referred to collectively as the “Upper Basin”). Consequently, understanding the processes that can affect water supply in the Upper Basin could be crucial for supporting human, agricultural, and ecological needs across a large spatial scale. The U.S. Geological Survey (USGS) does a wide variety of science in cooperation with resource managers, municipalities, tribes, and local, State, and Federal agencies to help improve understanding of processes, such as streamflow and water quality, potentially affecting water supply in the Upper Basin. This fact sheet describes three key potential factors affecting water supply in the Upper Basin—snow processes and water storage, wildfire and basin hydrology, and salinity concentrations and water quality—and highlights associated USGS research activities in the basin.

Arizona, Colorado, New Mexico, Utah, Wyoming↗

Compositions of modern dust and surface sediments in the Desert Southwest, United States

Modern dusts across southwestern United States deserts are compositionally similar to dust-rich Av soil horizons (depths of 0-0.5 cm and 1-4 cm at 35 sites) for common crustal elements but distinctly different for some trace elements. Chemical compositions and magnetic properties of the soil samples are similar among sites relative to dust sources, geographic areas, and lithologic substrates. Exceptions are Li, U, and W, enriched in Owens Valley, California, and Mg and Sr, enriched in soils formed on calcareous fan gravel in southeast Nevada. The Av horizons are dominated by dust and reflect limited mixing with substrate sediments. Modern dust samples are also similar across the region, except that Owens Valley dusts are higher in Mg, Ba, and Li and dusts both there and at sites to the north on volcanic substrates are higher in Sb and W. Thus, dust and Av horizons consist of contributions from many different sources that are well mixed before deposition. Modern dusts contain significantly greater amounts of As, Cd, Cr, Cu, Ni, Pb, and Sb than do Av horizons, which record dust additions over hundreds to thousands of years. These results suggest that modern dust compositions are influenced by anthropogenic sources and emissions from Owens (dry) Lake after its artificial desiccation in 1926. Both modern dusts and Av horizons are enriched in As, Ba, Cu, Li, Sb, Th, U, and W relative to average crustal composition, which we interpret to indicate that the geologic sources of dust in the southwestern United States are geochemically distinctive.

Journal of Geophysical Research F: Earth Surface↗

A roadmap for identifying and interpreting physical processes and national water model prediction bias associated with baseflow index regimes across the contiguous United States

Understanding how groundwater–surface water interactions shape streamflow variability is critical for diagnosing low flow behavior and prediction bias in continental scale hydrologic models. We present a process informed framework that links observed baseflow (BF) dynamics, watershed attributes, and National Water Model (NWM) performance across the contiguous United States. Using daily observed streamflow from 797 reference quality streamgages, we developed monthly baseflow index (BFI) signatures using a streamgage specific, calibrated digital filter. Hierarchical clustering of these signatures identified seven distinct BFI regimes capturing regional and seasonal variability. We evaluated NWM v3.0 retrospective streamflow performance within each regime using multiple hydrograph and flow duration curve-based metrics. Model skill varied systematically across regimes: mixed flow systems were simulated most accurately, while predominantly BF dominated and quickflow dominated regimes exhibited substantially poorer performance. Across nearly all regimes, the NWM underestimated observed BFI magnitude and frequently failed to reproduce seasonal BF patterns, indicating systematic biases in simulated low flow contributions. To relate these regimes to potential process controls, we trained a Random Forest classifier using static watershed attributes and applied Shapley Additive Explanations to identify features most strongly associated with each regime. Results highlight regionally varying influences, including the dominant role of snow fraction and seasonal runoff timing in snow dominated basins and the importance of evapotranspiration and aridity in quickflow dominated systems. Collectively, these findings demonstrate how hydrologic signatures combined with interpretable machine learning can diagnose regime specific model biases and generate process-based hypotheses about limitations in large scale hydrologic prediction systems.

contiguous United States↗

Ice and debris in the fretted terrain, Mars

Viking moderate- and high-resolution images along the northern highland margin were studied monoscopically and stereoscopically to contribute to an understanding of the development of fretted terrain. Results support the hypothesis that the fretting process involved flow facilitated by interstitial ice. The process apparently continued for a long period of time, and debris-apron formation shaped the fretted terrain in the past as well as the present. Interstitial ice in debris aprons is most likely derived from ground ice obtained by sapping or scarp collapse. Debris aprons could have been removed by sublimation if they consisted mostly of ice, or by deflation if they consisted mostly of debris. To remove the debris, wind erosion was either very intense early in martian history, or was intermittent, perhaps owing to climatic cycles.

Journal of Geophysical Research↗

Metabolic interactions underpinning high methane fluxes across terrestrial freshwater wetlands

Current estimates of wetland contributions to the global methane budget carry high uncertainty, particularly in accurately predicting emissions from high methane-emitting wetlands. Microorganisms drive methane cycling, but little is known about their conservation across wetlands. To address this, we integrate 16S rRNA amplicon datasets, metagenomes, metatranscriptomes, and annual methane flux data across 9 wetlands, creating the Multi-Omics for Understanding Climate Change (MUCC) v2.0.0 database. This resource is used to link microbiome composition to function and methane emissions, focusing on methane-cycling microbes and the networks driving carbon decomposition. We identify eight methane-cycling genera shared across wetlands and show wetland-specific metabolic interactions in marshes, revealing low connections between methanogens and methanotrophs in high-emitting wetlands. Methanoregula emerged as a hub methanogen across networks and is a strong predictor of methane flux. In these wetlands it also displays the functional potential for methylotrophic methanogenesis, highlighting the importance of this pathway in these ecosystems. Collectively, our findings illuminate trends between microbial decomposition networks and methane flux while providing an extensive publicly available database to advance future wetland research.

Nature Communications↗

Contributions of year-classes of blue pike to the commercial fishery of Lake Erie, 1943-59

The blue pike ( Stizostedion vitreum glaucum ) contributed about 12.7 million lb annually to the commercial production of fish in Lake Erie in 1915–59. Production averaged about 27% of the total for all species; in some years it exceeded 50%. The catch fluctuated greatly and was featured by a series of seven "highs" and "lows" during the 45-year period. The landings ranged between 2 million and 26 million lb; periods of peak production were 5 to 9 years apart. A sharp decline in the catch started in 1957. The take of 79,000 lb in 1959 was the lowest on record to that time.Age and size compositions of the catch were determined from samples of blue pike taken from commercial landings in the fall, 1943–59. Peaks in production in that period were attributed to a few strong year-classes separated by several weak year-classes. Of the 20 year-classes represented in the samples, those of 1944 and 1949 were by far the strongest; together they contributed 42% (by weight) of the fall blue pike production in 1943–59. The strength of the 1939 and 1940 year-classes was moderate and the 1954 year-class was the last one of any importance. The other 15 year-classes were weak.The 1957–59 decline in production was accompanied by a marked increase in rate of growth. Blue pike in age-group III weighed nearly eight times more and were 7.7 inches longer in 1959 than in 1951. Landings after 1958 consisted of only a few large fish. The collapse of the fishery forced blue pike fishermen either to fish for less valuable species or to discontinue operation.

Journal of the Fisheries Research Board of Canada↗

Big Spring spinedace and associated fish populations and habitat conditions in Condor Canyon, Meadow Valley Wash, Nevada

Executive Summary: This project was designed to document habitat conditions and populations of native and non-native fish within the 8-kilometer Condor Canyon section of Meadow Valley Wash, Nevada, with an emphasis on Big Spring spinedace (Lepidomeda mollispinis pratensis). Other native fish present were speckled dace (Rhinichthys osculus) and desert sucker (Catostomus clarki). Big Spring spinedace were known to exist only within this drainage and were known to have been extirpated from a portion of their former habitat located downstream of Condor Canyon. Because of this extirpation and the limited distribution of Big Spring spinedace, the U.S. Fish and Wildlife Service listed this species as threatened under the Endangered Species Act in 1985. Prior to our effort, little was known about Big Spring spinedace populations or life histories and habitat associations. In 2008, personnel from the U.S. Geological Survey's Columbia River Research Laboratory began surveys of Meadow Valley Wash in Condor Canyon. Habitat surveys characterized numerous variables within 13 reaches, thermologgers were deployed at 9 locations to record water temperatures, and fish populations were surveyed at 22 individual sites. Additionally, fish were tagged with Passive Integrated Transponder (PIT) tags, which allowed movement and growth information to be collected on individual fish. The movements of tagged fish were monitored with a combination of recapture events and stationary in-stream antennas, which detected tagged fish. Meadow Valley Wash within Condor Canyon was divided by a 12-meter (m) waterfall known as Delmue Falls. About 6,100 m of stream were surveyed downstream of the falls and about 2,200 m of stream were surveyed upstream of the falls. Although about three-quarters of the surveyed stream length was downstream of Delmue Falls, the highest densities and abundance of native fish were upstream of the falls. Big Spring spinedace and desert sucker populations were highest near the upper end of Condor Canyon, where a tributary known as Kill Wash, and several springs, contribute flow and moderate high and low water temperature. Kill Wash and the area around its confluence with Meadow Valley Wash appeared important for spawning of all three native species. Detections of PIT-tagged fish indicated that there were substantial movements to this area during the spring. Our surveys included about 700 m of Meadow Valley Wash upstream of Kill Wash. A small falls about 2 m high was about 560 m upstream of Kill Wash. This falls is likely a barrier to upstream fish movement at most flows. Populations of all three native species were found upstream of this small falls. Age-0 fish of all three species were present, indicating successful spawning. The maximum upstream extent of native fish within Meadow Valley Wash was not determined. Our surveys included about 700 m of Meadow Valley Wash upstream of Kill Wash. A small falls about 2 m high was about 560 m upstream of Kill Wash. This falls is likely a barrier to upstream fish movement at most flows. Populations of all three native species were found upstream of this small falls. Age-0 fish of all three species were present, indicating successful spawning. The maximum upstream extent of native fish within Meadow Valley Wash was not determined. A population of non-native rainbow trout (Oncorhynchus mykiss) was found within the 2,000 m of stream immediately downstream of Delmue Falls. Non-native crayfish were very common both upstream and downstream of Delmue Falls. We were not able to quantify crayfish populations, but they compose a significant portion of the biomass of aquatic species in Condor Canyon. There were some distinctive habitat features that may have favored native fish upstream of Delmue Falls. Upstream of the falls, water temperatures were moderated by inputs from springs, turbidity was lower, pool habitat was more prevalent, substrate heterogeneity was higher, and there was less fine sediment than

Open-File Report↗

Developing an outcome-based biodiversity metric in support of the field to market project: Final report

Our objective was to create a metric that would calculate the relative impact of common commercial agricultural practices on terrestrial vertebrate richness. We sought to define impacts in fields (including field borders) of the southeastern region’s commercial production of corn, wheat, soy, and cotton. The metric is intended to serve as an educational tool, allowing producers to see how operational decisions made at the field level impact overall vertebrate species richness and to explore decision impacts to targeted species groups (e.g. game, pest, or beneficial species). Agricultural landscapes are often mistakenly thought to be unsuitable habitat for most species. However, as demonstrated by results reported here, even large-scale, conventional agricultural producers are potentially important partners in biodiversity conservation. Many vertebrate species do inhabit agricultural landscapes, benefitting from the provision of water, food, or shelter within cultivated fields and their immediate borders (e.g., Holland et al. 2012). In the Southeastern US, of the 613 terrestrial vertebrate species modeled by the Southeast Gap Analysis Program (SEGAP) (http://www.basic.ncsu.edu/segap/index.html), 263 utilize row crop and associated agricultural land cover classes as potential habitat (Box 1). While some species may be sensitive to certain operational practices (e.g., tillage, pest management, or field border management practices), others are generally tolerant, and some may benefit either directly or indirectly. For example, field margins and ditches often serve as semi-natural habitats providing foraging resources and shelter for vertebrates and are shown to positively influence species richness and abundance (Billeter et al. 2007; Herzon & Helenius 2008; Marshall & Moonen 2002; Shore et al. 2005; Weibull et al. 2003; Wuczyńskia et al. 2011). Biodiversity responses are, therefore, complex, as an individual species’ responses to agricultural production practices depends on that animal’s resource specialization, mobility, and life history strategies (Jeanneret et al. 2003a, b; Jennings & Pocock 2009). The knowledge necessary to define the biodiversity contribution of agricultural lands is specialized, dispersed, and nuanced, and thus not readily accessible. Given access to clearly defined biodiversity tradeoffs between alternative agricultural practices, landowners, land managers and farm operators could collectively enhance the conservation and economic value of agricultural landscapes. Therefore, Field to Market: The Keystone Alliance for Sustainable Agriculture and The Nature Conservancy jointly funded a pilot project to develop a biodiversity metric to integrate into Field to Market’s existing sustainability calculator, The Fieldprint Calculator (http://www. fieldtomarket.org/). Field to Market: The Keystone Alliance for Sustainable Agriculture is an alliance among producers, agribusinesses, food companies, and conservation organizations seeking to create sustainable outcomes for agriculture. The Fieldprint Calculator supports the Keystone Alliance’s vision to achieve safe, accessible, and nutritious food, fiber and fuel in thriving ecosystems to meet the needs of 9 billion people in 2050. In support of this same vision, our project provides proof-of-concept for an outcome-based biodiversity metric for Field to Market to quantify biodiversity impacts of commercial row crop production on terrestrial vertebrate richness. Little research exists examining the impacts of alternative commercial agricultural practices on overall terrestrial biodiversity (McLaughlin & Mineau 1995). Instead, most studies compare organic versus conventional practices (e.g. Freemark & Kirk 2001; Wickramasinghe et al. 2004), and most studies focus on flora, avian, or invertebrate communities (Jeanneret et al. 2003a; Maes et al. 2008; Pollard & Relton 1970). Therefore, we used an expert-knowledge-based approach to develop a metric that predicts expected impacts to shelter and forage resources, individual species, and overall biodiversity (species richness). This approach is modeled after an ecosystems services concept (WRI 2005), except that we examine services (i.e., resources) provided to vertebrate wildlife rather than service provided to the human population. SEGAP predicts species that are potentially present in an area given landscape-scale habitat availability, configuration, and context (e.g., patch size, proximity to resources, connectivity, potential for disturbance). Based on the prediction of species that may be potentially present, the impacts of management decisions within fields and around their borders can be analyzed based on the impact of those practices to the availability of species’ resources. The final metric provides an index of a producer’s relative impact, but perhaps even more importantly, the underlying database allows producers to explore details such as which species are most impacted or how alternative decisions would impact their score.

Technical Bulletin↗

DNA and allozyme markers provide concordant estimates of population differentiation: Analyses of U.S. and Canadian populations of Yukon River fall-run chum salmon ( Oncorhynchus keta )

Although the number of genetic markers available for fisheries research has steadily increased in recent years, there is limited information on their relative utility. In this study, we compared the performance of different "classes" of genetic markers (mitochondrial DNA (mtDNA), nuclear DNA (nDNA), and allozymes) in terms of estimating levels and partitioning of genetic variation and of the relative accuracy and precision in estimating population allocations to mixed-stock fisheries. Individuals from eight populations of fall-run chum salmon ( Oncorhynchus keta ) from the Yukon River in Alaska and Canada were assayed at 25 loci. Significant differences in mitochondrial haplotype and nuclear allele frequencies were observed among five drainages. Populations from the U.S.-Canada border region were not clearly distinguishable based on multilocus allele frequencies. Although estimates of total genetic diversities were higher for the DNA loci ( H t = 0.592 and h = 0.647 for nDNA and mtDNA, respectively) compared with protein allozymes ( H t = 0.250), estimates of the extent of population differentiation were highly concordant across marker classes (mean theta = 0.010, 0.011, and 0.016 for allozymes, nDNA, and mtDNA, respectively). Simulations of mixed-stock fisheries composed of varying contributions of U.S. and Canadian populations revealed a consistent bias for overallocation of Canadian stocks when expected Canadian contributions varied from 0 to 40%, due primarily to misallocations among genetically similar border populations. No single marker class is superior for differentiating populations of this species at the spatial scale examined.

Yukon River↗

Point sources and agricultural practices control spatial-temporal patterns of orthophosphate in tributaries to Chesapeake Bay

Orthophosphate (PO 4 ) is the most bioavailable form of phosphorus (P). Excess PO 4 may cause harmful algal blooms in aquatic ecosystems. A major restoration effort is underway for Chesapeake Bay (CB) to reduce P, nitrogen, and sediment loading to CB. Although PO 4 cycling and delivery to streams has been characterized in small-scale studies, regional drivers of PO 4 patterns remain poorly understood because most water quality trend assessment focus on total P. Moreover, these trend assessments are usually at an annual timestep. To address this research gap, we analyzed PO 4 patterns over a 9-year period at 53 monitoring stations across the CB watershed to: 1) characterize the role of PO 4 in total P fluxes and trends; 2) describe spatial and temporal patterns of PO 4 concentrations across seasons and streamflow ; and 3) explore factors explaining these patterns. Agricultural watersheds exported the most total P compared with watersheds under different land uses (e.g., urban or forest), with PO 4 comprising up to 50% of those exports. Although PO 4 exports are declining at many sites, some agricultural regions are experiencing increasing trends at a rate sufficient to drive total P trends. Regression modeling results suggest that point source load reductions are likely responsible for decreasing PO 4 concentrations observed at many sites. Watersheds with more Conservation Reserve Program enrollment had lower summer PO 4 concentrations, highlighting the effectiveness of this practice. Manure inputs strongly predicted PO 4 concentrations at high flows across all seasons. Both manure applications and conservation tillage were correlated with changes in PO 4 concentrations at high flow, suggesting these activities could contribute to increasing PO 4 concentrations. This study highlights the effectiveness of point source control for reducing PO 4 exports and underscores the need for management strategies to target sources, practices, and landscape factors determining PO 4 loss from soils where manure inputs remain high.

Delaware, Maryland, New York, Pennsylvania, Virgin↗

Endocrine active chemicals and endocrine disruption in Minnesota streams and lakes: Implications for aquatic resources, 1994-2008

The U.S. Geological Survey, in cooperation with St. Cloud State University, Minnesota Department of Health, Minnesota Pollution Control Agency, Minnesota Department of Natural Resources, Metropolitan Council Environmental Services, and the University of Minnesota, has conducted field monitoring studies and laboratory research to determine the presence of endocrine active chemicals and the incidence of endocrine disruption in Minnesota streams and lakes during 1994&ndash;2008. Endocrine active chemicals are chemicals that interfere with the natural regulation of endocrine systems, and may mimic or block the function of natural hormones in fish or other organisms. This interference commonly is referred to as endocrine disruption. Indicators of endocrine disruption in fish include vitellogenin (female egg yolk protein normally expressed in female fish) in male fish, oocytes present in male fish testes, reduced reproductive success, and changes in reproductive behavior. The results from a series of studies during 1994&ndash;2008 demonstrate that endocrine active chemicals are present in Minnesota surface waters, indicating that aquatic organism exposure is likely. Endocrine active chemicals have been identified in wastewater-treatment plant effluent and surface waters downstream from discharge of wastewater-treatment plant effluent throughout Minnesota at low concentrations. Biological indicators of endocrine disruption have been detected in wild fish throughout Minnesota at sites directly downstream from wastewater-treatment plant effluent, indicating that endocrine active chemicals in effluent contribute to endocrine disruption in fish. This finding was confirmed in a controlled study exposing fathead minnows to wastewater-treatment plant effluent at an onsite fish exposure laboratory. During this controlled study, changes in biological responses coincided with changes in wastewater-treatment plant effluent composition demonstrating that effluent effects on fish endocrine systems are temporally variable. Although chemicals contributing to endocrine disruption in fish are complex, several laboratory studies have further confirmed that certain classes of chemicals, such as hormones and alkylphenols, which are components of wastewater-treatment plant effluent, affect the endocrine systems of fish through biochemical, structural, and behavioral disruption. Although these studies indicate that wastewater-treatment plant effluent is a conduit for endocrine active chemicals to surface waters, endocrine active chemicals also were present in surface waters with no obvious wastewater-treatment plant effluent sources. Endocrine active chemicals were detected and indicators of endocrine disruption in fish were measured at numerous sites upstream from discharge of wastewater-treatment plant effluent. These observations indicate that other unidentified sources of endocrine active chemicals exist, such as runoff from land surfaces, atmospheric deposition, inputs from onsite septic systems, or other groundwater sources. Alternatively, some endocrine active chemicals may not yet have been identified or measured. The presence of biological indicators of endocrine disruption in male fish indicates that the fish are exposed to endocrine active chemicals. However indicators of endocrine disruption in male fish does not indicate an effect on fish reproduction or changes in fish populations.

Minnesota↗

Comparison of sediments and organisms in identifying sources of biologically available trace metal contamination

Sediments and an indicator organism (Macoma balthica, a deposit-feeding bivalve) were used to assess the relative importance of secondary sewage, urban runoff, a landfill containing metal-enriched ash wastes and a yacht harbor in contributing to Ag, Cu and Zn enrichment in South San Francisco Bay. Spatial gradients in sediments and organisms showed Cu and Ag enrichment originated from sewage discharge, whereas Zn enrichment originated from both sewage and urban runoff. Elevated concentrations of Cu in the sediments of the yacht harbor resulted from a high abundance of fine particles. The biological availability of Cu, Ag and Zn did not coincide with metal enrichment in sediments. The availability of Cu and Ag was greatest nearest the sewage outfall and greater in winter and spring than in summer. The availability of Zn in urban runoff appeared to be lower than the availability of Zn associated with sewage.

Water Research↗

Interannual variability of snowmelt in the Sierra Nevada and Rocky Mountains, United States: examples from two alpine watersheds

The distribution of snow and the energy flux components of snowmelt are intrinsic characteristics of the alpine water cycle controlling the location of source waters and the effect of climate on streamflow. Interannual variability of these characteristics is relevant to the effect of climate change on alpine hydrology. Our objective is to characterize the interannual variability in the spatial distribution of snow and energy fluxes of snowmelt in watersheds of a maritime setting, Tokopah Basin (TOK) in California's southern Sierra Nevada, and a continental setting, Green Lake 4 Valley (GLV4) in Colorado's Front Range, using a 12 year database (1996&ndash;2007) of hydrometeorological observations and satellite-derived snow cover. Snowpacks observed in GLV4 exhibit substantially greater spatial variability than in TOK (0.75 versus 0.28 spatial coefficient of variation). In addition, modeling results indicate that the net turbulent energy flux contribution to snowmelt in GLV4 is, on average, 3 times greater in magnitude (mean 29% versus 10%) and interannual variability (standard deviation 17% versus 6%) than in TOK. These energy flux values exhibit strong seasonality, increasing as the melt season progresses to times later in the year (R 2 = 0.54&ndash;0.77). This seasonality of energy flux appears to be associated with snowmelt rates that generally increase with onset date of melt (0.02 cm d -2 ). This seasonality in snowmelt rate, coupled to differences in hydrogeology, may account for the observed differences in correspondence between the timing of snowmelt and timing of streamflow in these watersheds.

Sierra Nevada;Rocky Mountains↗