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USGS2024

Leveraging angler effort to inform fisheries management: Using harvest and harvest rate to estimate abundance of White Sturgeon

Traditional methods for estimating abundance of fish populations are not feasible in some systems due to complex population structure and constraints on sampling effort. Lincoln’s estimator provides a technique that uses harvest and harvest rate to estimate abundance. Using angler catch data allows assumptions of the estimator to be addressed without relying on methods that could be prohibitively field-intensive or costly. Historic estimates of White Sturgeon Acipenser transmontanus abundance in the Sacramento–San Joaquin River basin have been obtained using mark–recapture methods; however, White Sturgeon population characteristics often cause violations of model assumptions, such as population closure and independent capture probabilities. We developed a version of Lincoln’s estimator using a joint likelihood, estimated abundance of White Sturgeon in the Sacramento–San Joaquin River basin in 2015 using this method and empirical data and assessed accuracy and precision of estimates in a simulation study. Estimating abundance using harvest and harvest rate, as represented by our model framework, has the potential to be precise and accurate. The joint likelihood–based approach fitted using Bayesian methods is advantageous because it includes all sources of variation in a single model. Precision of abundance estimates was low with application of the model to White Sturgeon in the Sacramento–San Joaquin River basin and to similar conditions in a simulated dataset. Using simulation, precision and accuracy increased with increases in the number of high-reward and standard tags released, tag reporting rate, tag retention rate, and harvest rate. Results demonstrate potential sources of error when using this approach and suggest that increasing the number of tagged fish and tag reporting rate are potential actions to improve precision and accuracy of abundance estimates of the model.

California↗

USGS2016

Benefits and limitations of using decision analytic tools to assess uncertainty and prioritize Landscape Conservation Cooperative information needs

The Landscape Conservation Cooperatives (LCCs) are a network of partnerships throughout North America that are tasked with integrating science and management to support more effective delivery of conservation at a landscape scale. In order to achieve this integration, some LCCs have adopted the approach of providing their partners with better scientific information in an effort to facilitate more effective and coordinated conservation decisions. Taking this approach has led many LCCs to begin funding research to provide the information for improved decision making. To ensure that funding goes to research projects with the highest likelihood of leading to more integrated broad scale conservation, some LCCs have also developed approaches for prioritizing which information needs will be of most benefit to their partnerships. We describe two case studies in which decision analytic tools were used to quantitatively assess the relative importance of information for decisions made by partners in the Plains and Prairie Potholes LCC. The results of the case studies point toward a few valuable lessons in terms of using these tools with LCCs. Decision analytic tools tend to help shift focus away from research oriented discussions and toward discussions about how information is used in making better decisions. However, many technical experts do not have enough knowledge about decision making contexts to fully inform the latter type of discussion. When assessed in the right decision context, however, decision analyses can point out where uncertainties actually affect optimal decisions and where they do not. This helps technical experts understand that not all research is valuable in improving decision making. But perhaps most importantly, our results suggest that decision analytic tools may be more useful for LCCs as way of developing integrated objectives for coordinating partner decisions across the landscape, rather than simply ranking research priorities.

Journal of Fish and Wildlife Management↗

USGS2023

Precision of structures used to estimate age and growth of Apache Trout from Arizona

Obtaining reliable information on the age structure of fish populations is important for making conservation and management decisions. We sought to evaluate precision and reader confidence in age estimates from scales (two body locations), sectioned fin rays (pectoral, pelvic, anal), and sectioned sagittal otoliths from Apache Trout Oncorhynchus apache ( n = 78 fish) sampled from the East Fork White River, Arizona, in 2017. Two experienced readers without prior knowledge of fish length aged structures independently. Each reader provided a confidence rating of 0 (no confidence) to 3 (completely confident) as a measure of readability. Both readers were unable to estimate age from scales collected from the area just posterior to the insertion of the pectoral fin. We used scales removed from an area just dorsal to the lateral line and posterior to the dorsal fin in all analyses. Percentage of exact agreement between readers was highest for scales and otoliths (>72.0%) and lowest for fin rays (31.8–58.1%). Average confidence rating was highest for sectioned otoliths (mean ± SE, 2.1 ± 0.07), and lowest for anal fin rays (0.3 ± 0.06) and scales (0.7 ± 0.05). We compared consensus ages from otoliths to the other structures. Percentage of exact agreement with otolith age was low and varied from 21.6 to 35.7% among structures. Similarly, percentage of agreement within 1 y was also low among structures (58.0–70.2%). Scales consistently underestimated age of age-4 and older fish (based on otolith age), whereas fin rays tended to overestimate age of younger fish and underestimate age of older Apache Trout. Although sectioned otoliths require lethal sampling, they produced the most precise age estimates for Apache Trout with the highest reader confidence. Dorsal scales may be a suitable nonlethal alternative to otoliths if ages for only young fish (age 3 and younger) meet study objectives.

Arizona↗

USGS2022

Nonlethal tools to identify mass ovarian follicular atresia in Burbot

Skipped spawning, or variation in spawning periodicity, occurs in many annual spawning fish species and is an important consideration for population management. We assessed plasma sex steroid concentrations and measured gonad size and ovarian follicle diameter as metrics to nonlethally identify mass ovarian follicular atresia, which may contribute to skipped spawning in Burbot Lota lota . We maintained wild fish in captivity and exposed them to increasing water temperatures during a 3-wk period before the spawning season to induce mass ovarian follicular atresia. We collected ovarian follicles, blood plasma, and gonadal sonograms from fish weekly between January 28, 2018, and March 25, 2018. We histologically analyzed ovarian follicles to confirm stage of maturity. We measured concentrations of plasma sex steroids testosterone (T) and estradiol-17β (E2) by radioimmunoassay. We measured gonad diameter and circumference by ultrasonography and ovarian follicle diameter by image analysis. Mean plasma T concentration decreased from 8.94 ng/mL during late vitellogenesis to 1.83 ng/mL during atresia, suggesting that plasma T concentrations may be used to identify mass ovarian follicular atresia. We do not recommend using plasma E2 concentrations to identify mass ovarian follicular atresia because E2 concentrations rapidly decreased during the completion of vitellogenesis and the initiation of atresia in Burbot; therefore, plasma E2 may not accurately identify mass ovarian follicular atresia. Mean gonad diameter measured by ultrasonography decreased from 4.05 cm during late vitellogenesis to 3.65 cm during atresia. Mean diameter of ovarian follicles decreased during the final week of the study, suggesting that ovarian follicle diameter may be used to identify advanced mass ovarian follicular atresia. The nonlethal tools assessed—plasma sex steroid concentrations, ultrasonography, and ovarian follicle diameter—enable fisheries biologists to determine the occurrence and frequency of mass ovarian follicular atresia among Burbot in Lake Roosevelt and may be applied to other Burbot populations.

Journal of Fish and Wildlife Management↗

USGS2024

Estimating age and growth of Largemouth Bass in southwestern reservoirs using otoliths and scales

Age and growth data are frequently used to monitor and manage important North American sport fishes such as Largemouth Bass Micropterus salmoides . Continental and regional growth standards have been developed for this species to assess fish growth over time and across space. However, Largemouth Bass age and growth data are infrequently collected in Arizona and the reliability of age estimates derived from typical structures (e.g., scales, otoliths) in the Southwest is uncertain. Our objectives were to 1) compare precision and bias of age estimates from scales with those from otoliths and 2) estimate Largemouth Bass growth in several southwestern warmwater reservoirs by using otoliths. We collected Largemouth Bass from three Arizona reservoirs—Alamo, Peña Blanca, and Roosevelt—by boat electrofishing in spring 2021. We removed scales and sagittal otoliths from fish and then prepared and independently aged them three times. We compared differences in precision and bias between scales and otoliths using reader agreement percentages, confidence ratings, average coefficients of variation, and age-bias plots. We used age estimates from Largemouth Bass otoliths to calculate mean lengths-at-age at capture and relative growth indices based on published growth standards in each reservoir. Largemouth Bass scale age estimates were less precise, overestimated ages of younger fish, and underestimated age of older fish compared with those of otoliths. Growth was lower in Peña Blanca Lake than in the other two reservoirs according to mean length-at-age estimates, and relative growth indices suggested that Largemouth Bass growth in all three reservoirs was above average at younger ages, but less so at older ages. The results from this study add to a growing body of literature supporting the use of otoliths for estimating age and growth of Largemouth Bass.

Arizona↗

USGS2015

Consolidation drainage and climate change may reduce Piping Plover habitat in the Great Plains

Many waterbird species utilize a diversity of aquatic habitats; however, with increasing anthropogenic needs to manage water regimes there is global concern over impacts to waterbird populations. The federally threatened Piping Plover (Charadrius melodus; hereafter plovers) is a shorebird that breeds in three habitat types in the Prairie Pothole Region of North Dakota, South Dakota, and Canada: riverine sandbars; reservoir shorelines; and prairie wetlands. Water surface areas of these habitats fluctuate in response to wet-dry periods; decreasing water surface areas expose shorelines that plovers utilize for nesting. Climate varies across the region so when other habitats are unavailable for plover nesting because of flooding, prairie wetlands may periodically provide habitat. Over the last century, many of the wetlands used by plovers in the Prairie Pothole Region have been modified to receive water from consolidation drainage (drainage of smaller wetlands into another wetland), which could eliminate shoreline nesting habitat. We evaluated whether consolidation drainage and fuller wetlands have decreased plover presence in 32 wetlands historically used by plovers. We found that wetlands with more consolidation drainage in their catchment and wetlands that were fuller had a lower probability of plover presence. These results suggest that plovers could have historically used prairie wetlands during the breeding season but consolidation drainage and/or climate change have reduced available shoreline habitat for plovers through increased water levels. Prairie wetlands, outside of some alkali wetlands in the western portion of the region, are less studied as habitat for plovers when compared to river and reservoir shorelines. Our study suggests that these wetlands may have played a larger role in plover ecology than previously thought. Wetland restoration and conservation, through the restoration of natural hydrology, may be required to ensure that adequate habitat exists among the three habitat types in the face of existing or changing climate and to ensure long-term conservation.

North Dakota↗

USGS2017

Body mass, wing length, and condition of wintering ducks relative to hematozoa infection

Waterfowl managers lack information regarding factors that may be reducing the positive response of waterfowl body condition to habitat improvements. Protozoan blood parasites (i.e., hematozoa) are commonly found in birds and have been related to reduced body mass, wing length, and body condition. We studied relationships between 12 measures of hematozoa infection and body mass, wing length, and body mass divided by wing length (i.e., body condition index [BCI]) of the five most common duck species (northern pintail [ Anas acuta ], mallard [ A. platyrhynchos ], green-winged teal [ A. crecca ], American wigeon [ A. Americana ], northern shoveler [ A. clypeata ]) wintering in the Central Valley of California during October 2006-January 2007. After accounting for variation due to species, age-sex cohort, Central Valley region, and month; wing length, body mass, and BCI were found to be negatively related to infection by Leucocytozoon and by "any hematozoa" but not related to infection by only Plasmodium or Haemoproteus , or coinfections of greater than one genera or parasite haplotype (albeit, few ducks had Plasmodium or Haemoproteus infection or coinfections). Evidence of a negative relationship with infection was stronger for body mass and BCI than for wing length and indicated that the relationships varied among species, age-sex cohorts, regions, and months. Compared to uninfected ducks, hematozoa-infected duck body mass, wing length, and BCI was -1.63% (85% CI = -2.79%- -0.47%), -0.12% (-0.41%- +0.17%), and -1.38% (-2.49%- -0.26%), respectively. Although, seemingly small, the -1.63% difference in body mass represents a large percentage (e.g., 38% for northern pintail) of the observed increase in wintering duck body mass associated with Central Valley habitat improvements. Because infection prevalence and relationship to body condition might change over time due to climate or other factors, tracking hematozoa infection prevalence might be important to inform and accurately assess the effect of conservation programs designed to improve waterfowl body condition.

California↗

USGS2022

Behavior of female adult Pacific lamprey (Entosphenus tridentatus) exposed to natural and synthesized odors

Conservation and management of Pacific Lamprey Entosphenus tridentatus and other imperiled lamprey species could include the use of chemosensory cues to attract or repel migrating adults. For restoration programs, passage of adult lamprey at dams might be improved by using cues to help guide lamprey through fishway entrances. In contrast, odors might repel unwanted invasive Sea Lamprey Petromyzon marinus in the Laurentian Great Lakes from spawning habitats or improve trapping efficiency. We conducted bioassays with Pacific Lamprey in a two-choice maze to evaluate the behavioral response of pre-ovulatory adult females to introduced chemical cues and changes in flow. During overnight tests, for each female we measured the number of entries into each arm of the maze and the amount of time spent in each arm after application of natural odors from pre-spawning conspecifics (males and females) in one of the arms. Using the same methods, we also tested whether adult females were attracted to natural odor from spermiating males, to a synthesized (artificially produced) component of a Sea Lamprey sex pheromone (3-keto petromyzonol sulfate, 3kPZS), or to an attraction flow (12 L/min as reference). In all tests, the lamprey showed consistent nocturnal activity, typically moving from sunset until sunrise and remaining inactive during daylight hours. For natural odors, the number of entries and the amount of time females spent in the treatment arm were not significantly different between control and treatment periods. However, females spent significantly less time in the treatment arm with the synthesized 3kPZS than when no odor was delivered. Females showed strong, positive responses to the attraction flow and with our assay, we could identify significant behavioral responses when the differences between the control and experimental means were greater than 15-20%. The response of lampreys to sex pheromones may be species-specific, with Pacific Lamprey less likely to respond to conspecific odors than Sea Lamprey.

Journal of Fish and Wildlife Management↗

USGS2017

Genetic mark–recapture improves estimates of maternity colony size for Indiana bats

Genetic mark–recapture methods are increasingly being used to estimate demographic parameters in species where traditional techniques are problematic or imprecise. The federally endangered Indiana bat Myotis sodalis has declined dramatically and threats such as white-nose syndrome continue to afflict this species. To date, important demographic information for Indiana bats has been difficult to estimate precisely using traditional techniques such as emergence counts. Successful management and protection of Indiana bats requires better methods to estimate population sizes and survival rates throughout the year, particularly during summer when these bats reproduce and are widely dispersed away from their winter hibernacula. In addition, the familial makeup of maternity colonies is unknown, yet important for understanding local and regional population dynamics. We had four objectives in this study. For the first two objectives we investigated the potential use of DNA from fecal samples (fecal DNA) collected at roosts to obtain genetically based mark–recapture estimates of 1) colony size and 2) survival rates, for an Indiana bat maternity colony in Indianapolis, Indiana. The third objective was to compare our genetically based colony-size estimates with emergence counts conducted at the same roost tree to evaluate the genetic mark–recapture method. Our fourth objective was to use fecal DNA to estimate levels of relatedness among individuals sampled at the roost. In the summer of 2008, we collected fecal pellets and conducted emergence counts at a prominent roost tree during three time periods each lasting 7 or 8 d. We genotyped fecal DNA using five highly polymorphic microsatellite loci to identify individuals and used a robust-design mark–recapture approach to estimate survival rates as well as colony size at the roost tree. Emergence count estimates at the roost tree ranged from 100 to 215, whereas genetic mark–recapture estimates were higher, ranging from 122 to 266 and more precise. Apparent survival was 0.994 (SE = 0.04) between sampling periods suggesting that few bats died or permanently emigrated during the course of the study. Relatedness estimates, r, between all pairs of individuals averaged 0.055 ranging from 0 to 0.779, indicating that most individuals were not closely related. We demonstrate here the promise of using fecal DNA to estimate demographic information for Indiana bats and potentially other bat species.

Journal of Fish and Wildlife Management↗

USGS2020

Carbon dioxide-induced mortality of four species of North American fishes

Fisheries managers have a growing interest in the use of carbon dioxide (CO 2 ) as a tool for controlling invasive fishes. However, limited published data exist on susceptibility of many commonly encountered species to elevated CO 2 concentrations. Our objective was to estimate the 24-h 50% lethal concentration (LC 50 ) and 95% lethal concentration (LC 95 ) of CO 2 for four fishes (Rainbow Trout Oncorhynchus mykiss , Common Carp Cyprinus carpio , Channel Catfish Ictalurus punctatus , and Westslope Cutthroat Trout Oncorhynchus clarkii lewisi ). In the laboratory, we exposed juvenile fish to a range of CO 2 concentrations for 24 h in unpressurized, flow-through tanks. We developed a Bayesian hierarchical model to estimate the dose-response relationship for each fish species with associated uncertainty, and estimated 24-h LC 50 and LC 95 values based on laboratory trials for each species. The minimum concentration inducing mortality differed among cold water–adapted species and warm water–adapted species groups: 150 mg CO 2 /L for Westslope Cutthroat Trout and Rainbow Trout and 225 mg CO 2 /L for Common Carp and Channel Catfish. We observed complete mortality at 275 mg CO 2 /L (38,672 microatmospheres [μatm]), 225 mg CO 2 /L (30,711 μatm), and 495 mg CO 2 /L (65,708 μatm [Common Carp]; 77,213 μatm [Channel Catfish]) for Westslope Cutthroat Trout, Rainbow Trout, and both Common Carp and Channel Catfish, respectively. There was evidence of a statistical difference between the 24-h LC 95 values of Westslope Cutthroat Trout and Rainbow Trout (245.0 [222.2–272.2] and 190.6 [177.2–207.8] mg CO 2 /L, respectively). Additionally, these values were almost half the estimated 24-h LC 95 values for Common Carp and Channel Catfish (422.5 [374.7–474.5] and 434.2 [377.2–492.2] mg CO 2 /L, respectively). Although the experimental findings show strong relationships between increased CO 2 concentration and higher mortality, additional work is required to assess the efficacy and feasibility of a CO 2 application in a field setting.

Journal of Fish and Wildlife Management↗

USGS2018

Short-term mortality and retention associated with tagging Age-0 walleye using passive integrated transponders (PITs) in the absence of anesthesia

The ability to individually mark juvenile fishes has important implications for fisheries management. For example, marking age-0 Walleye Sander vitreus could provide important information not provided by batch-marking, including individual variation in growth and estimates of length-dependent survival and recruitment. However, the relatively small size of age-0 Walleye in north temperate lakes has precluded use of many common tagging methods that provide information on individual fish (e.g., various anchor tags, jaw tags). Consequently, we evaluated short-term mortality and retention associated with using 12-mm passive integrated transponders (PITs) to mark age-0 Walleye (TL range = 93-216 mm; mean TL = 157 mm) by conducting 48-h within-lake net-pen trials and 7-d hatchery trials during September-October of 2015 and 2016. Age-0 Walleye were not anesthetized prior to PIT tagging. Our assessment allowed us to determine whether post-tagging mortality and PIT retention varied in relation to implant location (i.e., body cavity or pelvic girdle), fish length, and water temperature. During 2015, mean 48-h mortality rate of age-0 Walleye tagged with PITs in the body cavity was low (7%; SE = 3%) and did not differ from that of fish marked with only a fin clip (4%; SE = 2%) and reference fish (2%; SE = 1%). During 2016, mean mortality rates ranged from 2% (reference fish) to 6% (PIT inserted into pelvic girdle) and did not differ among treatments. During both years, mortality rates for nearly all treatments were highest (> 13%) when water temperatures were {greater than or equal to} 20°C, but decreased below 5% when water temperatures were {less than or equal to} 17°C. During 2016, dead age-0 Walleye in both PIT treatments were smaller than fish that survived. During the 7-d hatchery trials, mean mortality rates were higher for age-0 Walleye with PITs inserted into the body cavity (13%; SE = 4%) than fish that received a PIT in the pelvic girdle (4%; SE = 1%) and reference fish (4%; SE = 2%). Retention of PITs was high (> 96%) during all net-pen and hatchery trials. Collectively, our results suggest that PITs can be used to tag age-0 Walleye without anesthesia with the expectations of high initial retention and low mortality. Mortality rates may be minimized by implanting PITs into the pelvic girdle when water temperatures are {less than or equal to} 17°C.

Journal of Fish and Wildlife Management↗

USGS2011

Diet overlap of top-level predators in recent sympatry: bull trout and nonnative lake trout

The establishment of nonnative lake trout Salvelinus namaycush in lakes containing lacustrine–adfluvial bull trout Salvelinus confluentus often results in a precipitous decline in bull trout abundance. The exact mechanism for the decline is unknown, but one hypothesis is related to competitive exclusion for prey resources. We had the rare opportunity to study the diets of bull trout and nonnative lake trout in Swan Lake, Montana during a concomitant study. The presence of nonnative lake trout in Swan Lake is relatively recent and the population is experiencing rapid population growth. The objective of this study was to evaluate the diets of bull trout and lake trout during the early expansion of this nonnative predator. Diets were sampled from 142 bull trout and 327 lake trout during the autumn in 2007 and 2008. Bull trout and lake trout had similar diets, both consumed Mysis diluviana as the primary invertebrate, especially at juvenile stages, and kokanee Oncorhynchus nerka as the primary vertebrate prey, as adults. A diet shift from primarily M. diluviana to fish occurred at similar lengths for both species, 506 mm (476–545 mm, 95% CI) for bull trout and 495 mm (470–518 mm CI) for lake trout. These data indicate high diet overlap between these two morphologically similar top-level predators. Competitive exclusion may be a possible mechanism if the observed overlap remains similar at varying prey densities and availability.

Montana↗

USGS2011

Demography of the San Francisco gartersnake in coastal San Mateo County, California

The San Francisco gartersnake Thamnophis sirtalis tetrataenia has been federally listed as endangered since 1967, but little demographic information exists for this species. We examined the demography of a San Francisco gartersnake population on approximately 213 ha of California coastal prairie in San Mateo County, California, from 2007 to 2010. The best-supported mark–recapture model indicated annual variation in daily capture probabilities and annual survival rates. Abundance increased throughout the study period, with a mean total population from 2008 to 2010 of 443 (95% CI = 313–646) individuals. Annual survival was slightly greater than that of most other gartersnakes, with an annual probability of survival of 0.78 (0.55–0.95) in 2008–2009 and 0.75 (0.49–0.93) in 2009–2010. Mean annual per capita recruitment rates were 0.73 (0.02–2.50) in 2008–2009 and 0.47 (0.02–1.42) in 2009–2010. From 2008 to 2010, the probability of an increase in abundance at this site was 0.873, with an estimated increase of 115 (−82 to 326) individuals. The estimated population growth rate in 2008–2009 was 1.52 (0.73–3.29) and in 2009–2010 was 1.21 (0.70–2.17). Although this population is probably stable or increasing in the short term, long-term studies of the status of the San Francisco gartersnake at other sites are required to estimate population trends and to elucidate mechanisms that promote the recovery of this charismatic member of our native herpetofauna.

California↗

USGS2017

Differences in breeding bird assemblages related to reed canary grass cover cover and forest structure on the Upper Mississippi River

Floodplain forest of the Upper Mississippi River provides habitat for an abundant and diverse breeding bird community. However, reed canary grass Phalaris arundinacea invasion is a serious threat to the future condition of this forest. Reed canary grass is a well-known aggressive invader of wetland systems in the northern tier states of the conterminous United States. Aided by altered flow regimes and nutrient inputs from agriculture, reed canary grass has formed dense stands in canopy gaps and forest edges, retarding tree regeneration. We sampled vegetation and breeding birds in Upper Mississippi River floodplain forest edge and interior areas to 1) measure reed canary grass cover and 2) evaluate whether the breeding bird assemblage responded to differences in reed canary grass cover. Reed canary grass was found far into forest interiors, and its cover was similar between interior and edge sites. Bird assemblages differed between areas with more or less reed canary grass cover (.53% cover breakpoint). Common yellowthroat Geothlypis trichas , black-capped chickadee Parus atricapillus , and rose-breasted grosbeak Pheucticus ludovicianus were more common and American redstart Setophaga ruticilla , great crested flycatcher Myiarchus crinitus , and Baltimore oriole Icterus galbula were less common in sites with more reed canary grass cover. Bird diversity and abundance were similar between sites with different reed canary grass cover. A stronger divergence in bird assemblages was associated with ground cover ,15%, resulting from prolonged spring flooding. These sites hosted more prothonotary warbler Protonotaria citrea , but they had reduced bird abundance and diversity compared to other sites. Our results indicate that frequently flooded sites may be important for prothonotary warblers and that bird assemblages shift in response to reed canary grass invasion.

Upper Mississippi River↗

USGS2013

Size-dependent trophic patterns of pallid sturgeon and shovelnose sturgeon in a large river system

This study compared patterns of δ 15 N and δ 13 C enrichment of pallid sturgeon Scaphirhynchus albus and shovelnose sturgeon S. platorynchus in the Missouri River, United States, to infer their trophic position in a large river system. We examined enrichment and energy flow for pallid sturgeon in three segments of the Missouri River (Montana/North Dakota, Nebraska/South Dakota, and Nebraska/Iowa) and made comparisons between species in the two downstream segments (Nebraska/South Dakota and Nebraska/Iowa). Patterns in isotopic composition for pallid sturgeon were consistent with gut content analyses indicating an ontogenetic diet shift from invertebrates to fish prey at sizes of >500-mm fork length (FL) in all three segments of the Missouri River. Isotopic patterns revealed shovelnose sturgeon did not experience an ontogenetic shift in diet and used similar prey resources as small (<500-mm FL) pallid sturgeon in the two downstream segments. We found stable isotope analysis to be an effective tool for evaluating the trophic position of sturgeons within a large river food web.

Missouri River↗

USGS2012

Waste rice seed in conventional and stripper-head harvested fields in California: Implications for wintering waterfowl

Waste rice seed is an important food for wintering waterfowl and current estimates of its availability are needed to determine the carrying capacity of rice fields and guide habitat conservation. We used a line-intercept method to estimate mass-density of rice seed remaining after harvest during 2010 in the Sacramento Valley (SACV) of California and compared results with estimates from previous studies in the SACV and Mississippi Alluvial Valley (MAV). Posterior mean (95% credible interval) estimates of total waste rice seed mass-density for the SACV in 2010 were 388 (336–449) kg/ha in conventionally harvested fields and 245 (198–307) kg/ha in stripper-head harvested fields; the 2010 mass-density is nearly identical to the mid-1980s estimate for conventionally harvested fields but 36% lower than the mid-1990s estimate for stripped fields. About 18% of SACV fields were stripper-head harvested in 2010 vs. 9–15% in the mid-1990s and 0% in the mid-1980s; but due to a 50% increase in planted rice area, total mass of waste rice seed in SACV remaining after harvest in 2010 was 43% greater than in the mid-1980s. However, total mass of seed-eating waterfowl also increased 82%, and the ratio of waste rice seed to seed-eating waterfowl mass was 21% smaller in 2010 than in the mid-1980s. Mass-densities of waste rice remaining after harvest in SACV fields are within the range reported for MAV fields. However, because there is a lag between harvest and waterfowl use in the MAV but not in the SACV, seed loss is greater in the MAV and estimated waste seed mass-density available to wintering waterfowl in SACV fields is about 5–30 times recent MAV estimates. Waste rice seed remains an abundant food source for waterfowl wintering in the SACV, but increased use of stripper-head harvesters would reduce this food. To provide accurate data on carrying capacities of rice fields necessary for conservation planning, trends in planted rice area, harvest method, and postharvest field treatment should be tracked and impacts of postharvest field treatment and other farming practices on waste rice seed availability should be investigated.

California↗

USGS2014

Sex-biased gene flow among elk in the greater Yellowstone ecosystem

We quantified patterns of population genetic structure to help understand gene flow among elk populations across the Greater Yellowstone Ecosystem. We sequenced 596 base pairs of the mitochondrial control region of 380 elk from eight populations. Analysis revealed high mitochondrial DNA variation within populations, averaging 13.0 haplotypes with high mean gene diversity (0.85). The genetic differentiation among populations for mitochondrial DNA was relatively high ( F ST = 0.161; P = 0.001) compared to genetic differentiation for nuclear microsatellite data ( F ST = 0.002; P = 0.332), which suggested relatively low female gene flow among populations. The estimated ratio of male to female gene flow ( m m / m f = 46) was among the highest we have seen reported for large mammals. Genetic distance (for mitochondrial DNA pairwise F ST ) was not significantly correlated with geographic (Euclidean) distance between populations (Mantel's r = 0.274, P = 0.168). Large mitochondrial DNA genetic distances (e.g., F ST > 0.2) between some of the geographically closest populations (<65 km) suggested behavioral factors and/or landscape features might shape female gene flow patterns. Given the strong sex-biased gene flow, future research and conservation efforts should consider the sexes separately when modeling corridors of gene flow or predicting spread of maternally transmitted diseases. The growing availability of genetic data to compare male vs. female gene flow provides many exciting opportunities to explore the magnitude, causes, and implications of sex-biased gene flow likely to occur in many species.

Yellowstone National Park↗

USGS2015

Detection probabilities of electrofishing, hoop nets, and benthic trawls for fishes in two western North American rivers

Research comparing different sampling techniques helps improve the efficiency and efficacy of sampling efforts. We compared the effectiveness of three sampling techniques (small-mesh hoop nets, benthic trawls, boat-mounted electrofishing) for 30 species in the Green (WY, USA) and Kootenai (ID, USA) rivers by estimating conditional detection probabilities (probability of detecting a species given its presence at a site). Electrofishing had the highest detection probabilities (generally greater than 0.60) for most species (88%), but hoop nets also had high detectability for several taxa (e.g., adult burbot Lota lota , juvenile northern pikeminnow Ptychocheilus oregonensis ). Benthic trawls had low detection probabilities (<0.05) for most taxa (84%). Gear-specific effects were present for most species indicating large differences in gear effectiveness among techniques. In addition to gear effects, habitat characteristics also influenced detectability of fishes. Most species-specific habitat relationships were idiosyncratic and reflected the ecology of the species. Overall findings of our study indicate that boat-mounted electrofishing and hoop nets are the most effective techniques for sampling fish assemblages in large, coldwater rivers.

Idaho, Wyoming↗