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Results for “Journal of Comparative Physiology A”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

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1,681 records · Page 82Linked to original sources
USGS2025

Enhancing mineral systems exploration through geochronology, thermochronology, and isotope analysis: USGS Geochron and USGS Isotope databases

A mineral systems approach to mineral exploration provides a comprehensive framework for understanding ore deposit formation by examining the geodynamic, magmatic, hydrothermal, and sedimentary processes responsible for mineralization, alteration, and remobilization of economic mineral deposits. Temporal and thermal constraints on ore genesis are crucial for refining mineral system models and guiding predictive exploration strategies. Geochronology and thermochronology offer invaluable insights into the timing and thermal evolution of ore-forming processes, whereas isotopic analyses provide critical information on the source and geochemical history of ore-forming fluids. Combining these methodologies have proven highly effective for mineral exploration in regions like Australia, however, their combined application has been limited in the United States. To apply these tools to mineral systems-based exploration, the U.S. Geological Survey (USGS) has developed two products: (1) The USGS Geochron Database, and (2) the USGS Isotope Database. These databases provide centralized repositories of geo/thermochronological dates and data (Geochron Database) and both radiogenic and stable isotope data (Isotope Database) generated by the USGS and partners over the past decades. Integrating these datasets together and with traditional exploration approaches provides the mineral exploration community with powerful tools for determining the temporal and thermal histories of ore systems and identifying metallogenic source provinces.

Continental United States↗
USGS2025

Paleoseismology and paleogeodesy using coral microatolls

Establishing the rupture extent and slip distribution of individual paleo-earthquakes is vital for assessing fault behavior including the persistence of rupture segmentation, recurrence patterns, and similarity of successive events, key issues in both fault mechanics and hazard assessment. Techniques with high temporal and geodetic precision as well as a wide distribution of study sites are necessary to investigate past earthquakes in such detail. Coral microatoll growth is one of the best types of geologic record for paleoseismology and paleogeodesy given these needs, as it provides long, continuous, widely distributed records of centimeter-scale vertical tectonic motion with potentially annual-level temporal precision. This chapter describes the process of interpreting microatoll growth records to obtain time series of relative sea level, tectonic vertical deformation fields, and finally slip and coupling parameters on an underlying fault interface.

Book chapter↗
USGS2025

Scientific opportunities in the National Landscape Conservation System

The National Landscape Conservation System consists of unique and beautiful places across America’s landscapes where identified resources and values are protected and science is highlighted. The mission of the National Landscape Conservation System (NLCS), which is managed by the Bureau of Land Management and is often referred to as the agency’s National Conservation Lands, is to conserve, protect, and restore nationally significant landscapes for their cultural, ecological, and scientific values. This clear inclusion of science in the NLCS mission sets the stage for individual units to serve as places of learning, teaching, discovery, and innovation. Science is an integral part of managing the National Conservation Lands, and science conducted within and across the more than 900 units that make up the NLCS can inform and influence conservation and public land management well beyond its boundaries. Here, we highlight seven core aspects of National Conservation Lands that present valuable science opportunities: (1) the scientific values for which individual units are designated; (2) the many other resources, objects, and values within units; (3) the value of units as “control” sites for understanding the effects of activities such as mineral extraction that commonly occur elsewhere on multiple-use public lands but are often prohibited within National Conservation Lands; (4) the value of units for studying the effects of activities such as recreation that regularly occur and may be intensified on National Conservation Lands; (5) the high visibility of units, which draws strong interest and engagement from scientists, partners, and the public; (6) the functioning of the units as a network managed for a common purpose, which provides an opportunity to explore cross-cutting science questions across widely varying contexts and geographies; and (7) the opportunities units provide to promote and apply Indigenous Knowledge to scientific research to manage natural and cultural resources. Because of all of these characteristics, National Conservation Lands can serve as hubs for basic and applied science that can inform management of all public lands and resources into the future. We highlight these science opportunities through examples from existing units and suggest two actions that could help further science activities and impact on National Conservation Lands.

Parks Stewardship Forum↗
USGS2026

Stream sediment sources in Medicine Creek, northern Missouri and southern Iowa

This report presents the results of a cooperative study by the U.S. Geological Survey and Missouri Department of Natural Resources to quantify sediment transport source contributions in the Medicine Creek drainage basin. Understanding relative source contributions provides valuable information for selecting the conservation practices that may be most effective in reducing sediment and sediment-associated nutrient transport in the Medicine Creek drainage basin and similar areas of the Lower Grand River drainage basin. Sediment samples were collected from potential contributing areas (source samples) and from fluvial-transported samples (target samples). Source sample types included streambanks, row crop fields, and a combined pastures and forests category. Samples were analyzed for particle size and quantity of carbon, nitrogen, stable isotopes of carbon and nitrogen, and 49 mineral elements as potential tracers. Results for the carbon stable isotope ratio of carbon-13/carbon-12 (δ 13 C) and concentrations of total carbon, total nitrogen, calcium, potassium, and copper were selected by discriminant function analysis as the best combination of multiple tracers to differentiate each source type. The discriminant function analysis poorly differentiated pastures and forests, so these source types were combined. The sources defined by the discriminant function analysis were then used in an unmixing model to apportion sources for each target sample. In the study area, transported sediment was predominantly bank sediment, with an overall average of 86.9 percent of suspended-sediment samples and depositional streambed samples attributed to bank material. Suspended-sediment samples from the mainstem of Medicine Creek were dominated by bank sediments (average of 95.8 percent), and depositional streambed samples from throughout the drainage basin had more variable source contributions with an average of 71.1 percent attributed to bank material. The relative importance of upland sources (row crop fields and the combined pastures and forests category) varied seasonally and with streamflow but was not related to land use or drainage basin size. Relative contributions from upland sources were greater in the summer through winter rather than spring and during lower streamflow, though this may be driven by the seasonality of streamflow. These results indicate management practices that reduce bank erosion could be effective strategies for managing the dominant source of sediment and sediment-associated phosphorus.

Iowa, Missouri↗
USGS2025

PFAS sampling activities in the U.S. Geological Survey national networks

Per- and polyfluoroalkyl substances (PFAS), frequently called “forever chemicals,” are used for a wide variety of industrial purposes and are often found in common household and industrial items such as firefighting foams, non-stick cookware, and water-resistant materials. The contamination of water, air, and soil by PFAS is a national and global issue due to their widespread occurrence in multiple applications and resistance to biodegradation and other traditional treatment processes. Research indicates that many PFAS can be emitted to the atmosphere and transported and deposited long distances from the source. The U.S. Geological Survey (USGS) Water Resources Mission Area received funding to implement a national-scale sampling effort to assess PFAS occurrence. To follow agency directives, the National Water Quality Network (NWQN) added PFAS sample monitoring for both surface water and groundwater, and also added PFAS monitoring to selected sites in the National Atmospheric Deposition Program (NADP).

General Information Product↗
USGS2026

Predictable seismic cycles result from structural rupture barriers on oceanic transform faults

Earthquakes of magnitude ( M ) >5.5 on oceanic transform faults (OTFs) repeatedly rupture the same locked patches, sometimes quasiperiodically. These patches are separated by “barriers” that halt earthquake propagation and slip mostly aseismically. However, the physical processes governing this systematic behavior remain unclear. We analyzed two barriers along the Gofar transform fault that have arrested ~15 M 6 earthquakes over the past three decades. Ocean bottom seismometer data indicate that the barriers hosted intense microseismicity before the mainshocks and comprise multistrand faults and transtensional stepovers with 100- to 400-m lateral offset. These characteristics contradict earthquake rupture termination models invoking velocity-strengthening friction or large geometric steps and instead point to damage-enhanced porosity and dilatancy-strengthening mechanisms. By isolating rupture segments, the barriers regulate the quasiperiodic recurrence of OTF earthquakes.

Science↗
USGS2025

Estimated hydrogeologic, spatial, and temporal distribution of self-supplied domestic groundwater withdrawals for aquifers of the Virginia Coastal Plain

Water use from private-domestic wells accounts for nearly 40 percent of total groundwater withdrawals in the Virginia Coastal Plain Physiographic Province (henceforth called the Virginia Coastal Plain). However, because self-supplied domestic water use generally falls below the Virginia Department of Environmental Quality (VDEQ) reporting and management threshold of 300,000 gallons per month, quantifying these withdrawals is challenging. This report builds upon the foundation of previous U.S. Geological Survey investigations by providing revised techniques to improve estimates of the aquifer source, spatial distribution, and monthly magnitude of these groundwater withdrawals. The aquifer sources of private-domestic wells in the Virginia Coastal Plain were estimated by cross-referencing 8,264 well records from the VDEQ and the Virginia Department of Health to a digital model of the Virginia Coastal Plain hydrogeologic framework. This analysis highlights the regional importance of the Yorktown-Eastover, Potomac, and surficial aquifers. Collectively, these three aquifers account for 80 percent of self-supplied domestic groundwater withdrawals. The population using self-supplied domestic water was estimated using census blocks, well-use ratios, building footprints, and land-use and land-cover data to produce a high-resolution, disaggregated, raster-based dataset. This approach improves upon previous models at the census-block or road-network scale by reducing the low-density spread of the self-supplied domestic population across undeveloped areas and concentrating the population and its corresponding water use in the areas where it is most likely to occur. Results show that an estimated 475,332 people comprise the 2020 self-supplied domestic population of the Virginia Coastal Plain, an increase of 5.7 percent since 2010, and the greatest concentrations of self-supplied domestic population surround large cities. Estimates could be further refined with the addition of current and complete spatial data on public water-system service areas. The quantity of water used by the self-supplied domestic population was estimated by modifying published state per-capita water-use coefficients with the corresponding monthly variability assessed from Virginia Coastal Plain public water-system withdrawal data. This analysis estimates an average increase of 12 percent from June through August and an average decrease of 8 percent from December through March from the baseline annual average of 80 gallons per day per capita, which generally matches similar studies in the eastern United States. The application of these revised methodologies for the estimation of private-domestic wells and the self-supplied domestic population improves understanding of domestic groundwater use in the Virginia Coastal Plain across hydrogeologic, spatial, and temporal scales. These revisions help better inform water-resource managers and decision makers and support higher resolution groundwater modeling. Furthermore, these methods are transferrable to other areas where self-supplied domestic water withdrawals are important to the overall water budget.

Virginia↗
USGS2024

Mapping Arundo donax (Arundo cane) with multispectral imagery before, during, and after herbicide treatment along the Rio Grande in Webb County, Texas, 2020–21

Arundo donax , commonly called Arundo cane, giant reed, or Carrizo cane, is an invasive bamboo-like perennial grass common in riparian areas throughout the southwestern United States. In Texas, not only does it negatively affect riparian ecosystems, but it has also become a problem for border security because it reduces visibility along the Rio Grande. To address these problems, in 2015 the Texas State Soil and Water Conservation Board was authorized by the Texas State Legislature to develop a program to eradicate Arundo cane along the Rio Grande. In 2020, the Texas State Soil and Water Conservation Board applied imazapyr and glyphosate herbicides along a 19.3-kilometer reach of the Rio Grande, northwest of Laredo, Texas. The U.S. Geological Survey, in cooperation with the Texas State Soil and Water Conservation Board and the Webb Soil and Water Conservation District, used WorldView-3 Standard high-resolution satellite imagery to map Arundo cane extent along the reach before , during , and after the herbicide-treatment period on June 30, 2020, September 26, 2020, and May 7, 2021, respectively. A maximum likelihood supervised classification analysis was computed on the images to map the spatial extent and estimate the area covered by Arundo cane. The estimated area covered by Arundo cane in the before classification was 1,282,000 square meters, in the during classification was 1,064,000 square meters, and in the after classification was 1,108,000 square meters. The qualitative comparison of the three images shows that there was an overall decrease in vegetation classified as Arundo cane throughout the study area.

Texas↗
USGS2024

Reference 1D seismic velocity models for volcano monitoring and imaging: Methods, models, and applications

Seismic velocity models of the crust are an integral part of earthquake monitoring systems at volcanoes. 1D models that vary only in depth are typically used for real‐time hypocenter determination and serve as critical reference models for detailed 3D imaging studies and geomechanical modeling. Such models are usually computed using seismic tomographic methods that rely on P ‐ and S ‐wave arrival‐time picks from numerous earthquakes recorded at receivers around the volcano. Traditional linearized tomographic methods that jointly invert for source locations, velocity structure, and station corrections depend critically on having reasonable starting values for the unknown parameters, are susceptible to local misfit minima and divergence, and often do not provide adequate uncertainty information. These issues are often exacerbated by sparse seismic networks, inadequate distributions of seismicity, and/or poor data quality common at volcanoes. In contrast, modern probabilistic global search methods avoid these issues only at the cost of increased computation time. In this article, we review both approaches and present example applications and comparisons at several volcanoes in the United States, including Mount Hood (Oregon), Mount St. Helens (Washington), the Island of Hawai’i, and Mount Cleveland (Alaska). We provide guidance on the proper usage of these methods as relevant to challenges specific to volcano monitoring and imaging. Finally, we survey‐published 1D P ‐wave velocity models from around the world and use them to derive a generic stratovolcano velocity model, which serves as a useful reference model for comparison and when local velocity information is sparse.

Seismological Research Letters↗
USGS2026

Asynchronous landslide seasonality across the United States

Mid-range landslide outlooks can facilitate weather-related landslide preparedness and disaster response planning, but seasonal landslide activity remains poorly quantified at continental scales. Leveraging >55,000 reported landslides from across the United States (U.S.), we used circular statistics to quantify landslide seasonality in 67 National Weather Service County Warning Areas (CWAs). We found regional differences in landslide season timing and duration, with transitions between domains variably corresponding to climate class or river basin. We assessed differences in seasonality by movement type for slides, flows, and falls, detecting apparent, but uncertain, differences between slide and fall seasonalities in 27 of 35 (77%) of CWAs with both types reported. In the Pacific Northwest, where long records exist, we found a credible shift toward a later mean landslide season in western Washington from 1990 to 2020, but no trend in western Oregon. Our results can provide emergency planners a resource to assess seasonal landslide probability nationwide.

Geophysical Research Letters↗
USGS2024

2024 Crustal Deformation Modeling Workshop report

The 2024 Crustal Deformation Modeling Workshop was held June 10–14 at the Colorado School of Mines. The workshop included two days of tutorials on using PyLith for crustal deformation modeling, followed by three days of science talks and discussions. The workshop focused on four primary themes: ● Constraining long-term fault slip rates and their uncertainties using geodetic and geologic data; ● Earthquake cycle modeling with a focus on constraining models using seismic and geodetic data; ● Interaction of fluids and faulting; and ● Separating contributions of surface loading and tectonic loading in crustal deformation. The complete agenda is available on the CIG website.

Conference Paper↗
USGS2024

3-D mapping of the conterminous U.S. within the USGS National Cooperative Geologic Mapping Program: Progress and future prospects

The U.S. Geological Survey (USGS) National Cooperative Mapping Program (NCGMP) is bringing together subsurface and three-dimensional information at multiple scales for the conterminous United States from data produced throughout the USGS and by federal and state partners. Components of this work include data inventory and catalog development, data integration and database development, and construction of subregional and basin-scale three-dimensional (3-D) geologic models. At small scales, the NCGMP is compiling subsurface data to create a limited number of subsurface layers that map the majority of the lower 48 States. At larger scales, 3-D models of stratigraphic units are intended to be the subsurface analog and extension of the surface geologic maps made within the Program. The Mapping Program is developing methods of storing, visualizing, and distributing 3-D models and subsurface data from multiple sources in easily shareable, queryable, non-proprietary format(s). We report on progress in 3-D mapping of the conterminous U.S. and on future prospects.

conterminous United States↗
USGS2026

Extreme precipitation variability and soil texture controls on water-table response

Extreme precipitation events (EPEs), a key class of hydrometeorological extremes, are intensifying globally under climate change; however, their effects on water-table dynamics across varying soil textures remain poorly understood. To better understand the impacts of EPEs, we conducted one-dimensional modeling to evaluate water-table response time, displacement, recession time, and total recharge under EPEs of 0.20 m, 0.40 m, and 0.60 m amounts, applied over 1-, 7-, and 20-day durations across twelve soil textures. The results show that coarse soils (i.e., sand) respond within days, while fine soils (i.e., clay) may take over 200 days. Water-table displacement ranged from 0.30 to 1.64 m and increased with EPE magnitude. The time it took for water tables to recede ranged from 1.2 to 3.0 years. A first-order estimate of total possible recharge, calculated from porosity and displacement, ranged from 17% (clay) to 97% (sand), averaging ~63% across soil textures. These findings highlight that recharge is primarily governed by EPE magnitude and soil properties, not event duration. This modeling effort provides new insight into how soil texture modulates groundwater response to extreme precipitation, informing future water budget and resilience assessments.

Water↗
USGS2024

Potentially toxic elements in wild Agassiz’s desert tortoises: Tissue concentrations and association with disease

Background: Desert tortoise ( Gopherus agassizii ) populations have continued to decline due to infectious and other diseases, predation, and habitat alteration. The potential contribution of minerals and heavy metals to tortoise health and susceptibility to disease remains uncertain. Objective: The objective of this study was to evaluate the results of elemental analysis of trace minerals and macrominerals in scute keratin, kidney, and liver tissue from ill and dying desert tortoises salvaged for necropsy between 1993 and 2000. Methods: Salvaged tortoises were categorized by age (adult, juvenile), geographic location, and primary disease based on necropsy findings. A subset of tortoises that were injured or killed by vehicular trauma or predation but with no notable pathologic abnormalities were used as controls. A panel of 21 trace minerals and 6 macrominerals was analyzed in scute keratin, kidney, and liver tissue samples by inductively-coupled plasma spectrometry and atomic absorption spectrophotometry. Results: Necropsies were done on 46 tortoises, including 9 juveniles salvaged from 5 regions in the Colorado and Mojave deserts of California. Primary diseases were cutaneous dyskeratosis (n=9), infection/ inflammation (n=8), malnutrition (n=7), mycoplasmosis (n=5), and urolithiasis (n=3); 14 tortoises were classified as controls. Concentrations of elements differed significantly by tissue, age, desert region, and disease (P < 0.05). Tortoises with cutaneous dyskeratosis had significantly higher Se concentrations, primarily in keratin and liver, than tortoises with other diseases (P < 0.001). Juveniles were more likely than adults to have high Pb, Sn, and Zn levels (P < 0.05). All tortoises had detectable levels of more than one potentially toxic heavy metal, including As, Cd, Cr, Hg, Ni, Pb, Sn and V. Conclusions: Potentially toxic elements are frequently found in tissue from tortoises in desert regions of California, with significantly higher concentrations in diseased tortoises. Metal exposure from soils, mining, historic and ongoing military activities, and other human activities could increase susceptibility to disease in desert tortoises.

California↗
USGS1992

Nonpoint-source pollutant discharges of the three major tributaries to Reelfoot Lake, west Tennessee, October 1987-September 1989

An investigation of the concentration and loads of nitrogen, phosphorus, and suspended sediment in storm runoff to Reelfoot Lake, in western Tennessee, was conducted from October 1987 through September 1989. Concentrations of selected herbicides also were defined. Reelfoot Lake, with a surface area of about 15,500 acres, is the largest natural lake in Tennessee and an important recreation and fisheries resource. Previous studies showed that the lake is hypereutrophic, a condition caused by high concentrations of nutrients in water and sediments discharged from the three principal tributaries (South Reelfoot Creek, North Reelfoot Creek, and Running Slough) to the lake. Pesticides, including herbicides, have been detected in the lake's bottom sediments. Storm runoff contributed about 87percent of the total water discharge of the three main tributaries to Reelfoot Lake. South Reelfoot Creek contributed about 4.7 tons per acre per year of suspended sediment, while North Reelfoot Creek contributed about 1.9 tons per acre per year. Running Slough contributed only about 0.31 ton per acre per year of suspended sediment. Most of the suspended sediment was transported by storm runoff between October and March. About 80 percent of the annual streamflow of the three tributaries occurs during these months. The North Reelfoot Creek basin contributed 8.2 pounds per acre per year of total nitrogen and 2.4 pounds per acre per year of total phosphorus. South Reelfoot Creek basin contributed about 6.5 and 1.3 pounds per acre per year of total nitrogen and phosphorus, respectively, while Running Slough basin contributions were 3.4 and 0.86 pounds per acre per year, respectively. The differences in nutrient yields appear to result from more row-crop agriculture and the relatively steeply sloping agricultural land in the North Reelfoot Creek basin. Ninety-one percent of the total nitrogen load and 95 percent of the total phosphorus load in the three streams was transported by storm runoff. Significant differences in the mean concentrations of nutrients in runoff were defined between the active agricultural months (April through September) and the inactive months (October through March). Storm-runoff samples were analyzed for II selected triazine herbicides. Alachlor and atrazine were the most commonly detected herbicides. Thirty-two percent of the samples contained detectable levels of alachlor and 93 percent of the samples contained detectable levels of atrazine. Ninety percent of the samples collected during the active agricultural months contained detectable leveki of alachlor and all 29 samples contained detectable levels of atrazine. Sixteen samples exceeded lifetime health-advisory levels for atrazine in drinking water (3 micrograms per liter); two samples collected from the April IS, 1988, storm at North Reelfoot Creek and South Reelfoot Creek contained 42 and 57 micrograms per liter of atrazine, respectively. Concentrations of the other nine triazine herbicides were generally less than the level of detection (0.1 microgram per liter).

Tennessee↗
USGS2025

Estimating the probability of export restrictions to inform mineral criticality

As demand for advanced technologies rises, mineral commodities will increase in geopolitical importance. To assess risks associated with mineral commodity supply chain disruptions, governmental agencies and others have developed "criticality" assessments, with criticality described using the economic impact and probability of supply chain disruptions. In previous work, subjective supply risk indicators were developed to approximate this probability, typically combining several factors such as supply diversity and political stability of trading partners, where indicator weightings can substantially impact results. This work explicitly quantifies trade barrier probability using an ensemble of several machine learning classifiers, with probability estimates informed by exogenous variables such as prior trade barrier implementation and global export dominance. Major differences in the high-probability countries and commodities are observed across models, but the ensemble method highlights Indonesia, China, Tanzania, and the United States as particularly high risk. This approach enables a direct, quantitative, objective approach to assessing trade barrier probability, enhancing risk identification and prioritization for policymakers.

SSRN↗
USGS2024

Parameter ESTimation with the Gauss–Levenberg–Marquardt algorithm: An intuitive guide

In this paper, we review the derivation of the Gauss–Levenberg–Marquardt (GLM) algorithm and its extension to ensemble parameter estimation. We explore the use of graphical methods to provide insights into how the algorithm works in practice and discuss the implications of both algorithm tuning parameters and objective function construction in performance. Some insights include understanding the control of both parameter trajectory and step size for GLM as a function of tuning parameters. Furthermore, for the iterative Ensemble Smoother (iES), we discuss the importance of noise on observations and show how iES can cope with non-unique outcomes based on objective function construction. These insights are valuable for modelers using PEST, PEST++, or similar parameter estimation tools.

Groundwater↗
USGS2021

New York and Landsat

From the iconic skyline of New York City to the forested landscapes of the Adirondack Mountains and the countryside of the Allegheny Plateau, the State of New York is overflowing with diversity and life. Bordered by the Atlantic Ocean on the east and two of the Great Lakes to the north and west, New York has more than 7,600 lakes, ponds, and reservoirs and more than 70,000 miles of rivers and streams. New York’s stewardship of its freshwater resources is fundamental to the health and well-being of all who work at, reside in, and visit the State’s landmarks and places. Harmful algal blooms in the State’s waterbodies are a growing concern and threaten the health of the region and its inhabitants. Images and data from Landsat satellites continue to provide critical information to scientists, public health officials, and resource managers who are studying the effects and risks of the problem.

New York↗