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Occurrence of transformation products in the environment

Historically, most environmental occurrence research has focused on the parent compounds of organic contaminants. Research, however, has documented that the environmental transport of chemicals, such as pesticides and emerging contaminants, are substantially underestimated if transformation products are not considered. Although most examples described herein were drawn from research conducted by the U.S. Geological Survey, such results are generally reflective of those found in other parts of the world. Results from a study of 51 streams in the Midwestern United States found that transformation products were seven of the ten most frequently detected pesticide compounds in late spring runoff (after application of pre-emergent herbicides), and nine of the ten most frequently detected compounds in fall season runoff (during and after harvest). In fact, 70% of the total herbicide concentration in water from the Mississippi River Basin was from transformation products. Results from a study of 86 municipal wells in Iowa found the frequency of detection increased from 17%, when pesticide parent compounds were considered, to 53%, when both parents and transformation products were considered. Transformation products were 12 of the 15 most frequently detected compounds for this groundwater study. Although studies on transformation products of synthetic organic compounds other than pesticides are not as common, wastewater treatment plant discharges have repeatedly been shown to contribute such transformation products to streams. In addition, select detergent transformation products have been commonly found in solid waste in the 1000's mg/kg. These findings and many others document that transformation products must be considered to fully assess the potential environmental occurrence of chemical contaminants and their transport and fate in various compartments of the hydrologic system. ?? 2008 Springer-Verlag Berlin Heidelberg.

The Handbook of Environmental Chemistry series↗

Quantifying wetland–aquifer interactions in a humid subtropical climate region: An integrated approach

Wetlands are widely recognized as sentinels of global climate change. Long-term monitoring data combined with process-based modeling has the potential to shed light on key processes and how they change over time. This paper reports the development and application of a simple water balance model based on long-term climate, soil, vegetation and hydrological dynamics to quantify groundwater–surface water (GW–SW) interactions at the Norman landfill research site in Oklahoma, USA. Our integrated approach involved model evaluation by means of the following independent measurements: (a) groundwater inflow calculation using stable isotopes of oxygen and hydrogen ( 16 O, 18 O, 1 H, 2 H); (b) seepage flux measurements in the wetland hyporheic sediment; and (c) pan evaporation measurements on land and in the wetland. The integrated approach was useful for identifying the dominant hydrological processes at the site, including recharge and subsurface flows. Simulated recharge compared well with estimates obtained using isotope methods from previous studies and allowed us to identify specific annual signatures of this important process during the period of study (1997–2007). Similarly, observations of groundwater inflow and outflow rates to and from the wetland using seepage meters and isotope methods were found to be in good agreement with simulation results. Results indicate that subsurface flow components in the system are seasonal and readily respond to rainfall events. The wetland water balance is dominated by local groundwater inputs and regional groundwater flow contributes little to the overall water balance.

Oklahoma↗

Shrub influence on soil carbon and nitrogen in a semi-arid grassland is mediated by precipitation and largely insensitive to livestock grazing

Dryland (arid and semi-arid) ecosystems globally provide more than half of livestock production and store roughly one-third of soil organic carbon (SOC). Biogeochemical pools are changing due to shrub encroachment, livestock grazing, and climate change. We assessed how vegetation microsite, grazing, and precipitation interacted to affect SOC and total nitrogen (TN) at a site with long-term grazing manipulations and well-described patterns of shrub encroachment across elevation and mean annual precipitation (MAP) gradients. We analyzed SOC and TN in the context of vegetation cover at ungrazed locations within livestock exclosures, high-intensity grazing locations near water sources, and moderate-intensity grazing locations away from water. SOC was enhanced by MAP ( p < 0.0001), but grazing intensity had little effect regardless of MAP ( p = 0.12). Shrubs enhanced SOC (300–1279 g C m −2 ) and TN (27–122 g N m −2 ), except at high MAP where the contribution or stabilization of shrub inputs relative to grassland inputs was likely diminished. Cover of perennial herbaceous plants and litter were significant predictors of SOC ( r 2 = 0.63 and 0.34, respectively) and TN ( r 2 = 0.64 and 0.30, respectively). Our results suggest that continued shrub encroachment in drylands can increase SOC storage when grass production remains high, although this response may saturate with higher MAP. In contrast, grazing – at least at the intensities of our sites – has a lesser effect. These effects underscore the need to understand how future climate and grazing may interact to influence dryland biogeochemical cycling.

Arid Land Research and Management↗

Controls on ecosystem and root respiration across a permafrost and wetland gradient in interior Alaska

Permafrost is common to many northern wetlands given the insulation of thick organic soil layers, although soil saturation in wetlands can lead to warmer soils and increased thaw depth. We analyzed five years of soil CO 2 fluxes along a wetland gradient that varied in permafrost and soil moisture conditions. We predicted that communities with permafrost would have reduced ecosystem respiration (ER) but greater temperature sensitivity than communities without permafrost. These predictions were partially supported. The colder communities underlain by shallow permafrost had lower ecosystem respiration (ER) than communities with greater active layer thickness. However, the apparent Q 10 of monthly averaged ER was similar in most of the vegetation communities except the rich fen, which had smaller Q 10 values. Across the gradient there was a negative relationship between water table position and apparent Q 10 , showing that ER was more temperature sensitive under drier soil conditions. We explored whether root respiration could account for differences in ER between two adjacent communities (sedge marsh and rich fen), which corresponded to the highest and lowest ER, respectively. Despite differences in root respiration rates, roots contributed equally (~40%) to ER in both communities. Also, despite similar plant biomass, ER in the rich fen was positively related to root biomass, while ER in the sedge marsh appeared to be related more to vascular green area. Our results suggest that ER across this wetland gradient was temperature-limited, until conditions became so wet that respiration became oxygen-limited and influenced less by temperature. But even in sites with similar hydrology and thaw depth, ER varied significantly likely based on factors such as soil redox status and vegetation composition.

Alaska↗

Larval coregonine density and diet composition along beaches of northern Lake Michigan

Recent oligotrophication in Lake Michigan has contributed to reduced biomass of spring zooplankton and a shift in the zooplankton assemblage toward more calanoid copepods. These changes have likely altered prey availability for first feeding native fish species that hatch in early spring, including coregonines. While spring zooplankton density and community composition are routinely monitored in offshore areas of Lake Michigan, descriptions of zooplankton in nearshore areas such as shallow beach environments and associated diet characteristics among larval coregonine species are limited. In this study, we describe the nearshore (<1 m depth, beach environment) zooplankton community in northeastern Lake Michigan during early spring 2015-2019 and compare the diets and diet selectivity of larval Lake Whitefish ( Coregonus clupeaformis ) and Cisco ( C. artedi ). Zooplankton density and composition varied among years, but calanoid copepods and copepod nauplii consistently dominated the zooplankton assemblage. Cisco and Lake Whitefish larvae were captured regularly, with Elk Rapids containing the highest proportion of Ciscoes each year. Calanoid and cyclopoid copepods were common in diets and estimated to have a positive selection. Although previous research has indicated high consumption of cyclopoid copepods by larval coregonines in Lake Michigan, our results provide new evidence that larval Lake Whitefish and Cisco of northeastern Lake Michigan will also consume and positively select for calanoid copepods when they are abundant. As such, should calanoid zooplankton continue to dominate the copepod community in Lake Michigan, larval coregonines appear capable of exploiting this abundant prey to improve their likelihood of survival to later life stages.

Michigan↗

Biodiversity connections—‘ties that bind’

Connectivity is a foundational concept in ecology and conservation and was the organising theme for the 2022 Annual Meeting of the Southeastern Fishes Council, a professional organisation dedicated to the study and conservation of freshwater fishes native to the southeast region of the United States (US). We introduce a Special Contribution of six papers selected from presentations at that meeting that illustrate perspectives on connections created by fish migration and dispersal, evolved life histories and habitat affinities and interspecific facilitation. Although focused on streams of the southeast US, each of these topics is broadly relevant to freshwater fish conservation, particularly with respect to causes and consequences of migratory fish depletion, population fragmentation and species declines. Many other connections relevant to the ecology and conservation of freshwater fishes remain relatively unexplored but could substantively advance conservation. We highlight the potential that species evolutionary histories, that is connections through time, reconstructed using species distributions and phylogenies may improve predictions of species responses to environmental change. Identifying species interdependencies, including undiscovered interactions that support survival or reproduction, could provide insights into how species losses may cascade as aquatic communities unravel. Finally, efforts to elucidate diverse connections between people and freshwater biodiversity, particularly where fisheries are historic and streams mostly go unnoticed, may prove essential to building public support for conservation measures. A research agenda anchored on ‘biodiversity connections’ has the potential to advance ecological understanding and public engagement, elements essential to conserving freshwater fishes.

Ecology of Freshwater Fish↗

Low pathogenic avian influenza viruses in wild migratory waterfowl in a region of high poultry production, Delmarva, Maryland

Migratory waterfowl are natural reservoirs for low pathogenic avian influenza viruses (AIVs) and may contribute to the long-distance dispersal of these pathogens as well as spillover into domestic bird populations. Surveillance for AIVs is critical to assessing risks for potential spread of these viruses among wild and domestic bird populations. The Delmarva Peninsula on the east coast of the United States is both a key convergence point for migratory Atlantic waterfowl populations and a region with high poultry production (>4,700 poultry meat facilities). Sampling of key migratory waterfowl species occurred at 20 locations throughout the Delmarva Peninsula in fall and winter of 2013–14. Samples were collected from 400 hunter-harvested or live-caught birds via cloacal and oropharyngeal swabs. Fourteen of the 400 (3.5%) birds sampled tested positive for the AIV matrix gene using real-time reverse transcriptase PCR, all from five dabbling duck species. Further characterization of the 14 viral isolates identified two hemagglutinin (H3 and H4) and four neuraminidase (N2, N6, N8, and N9) subtypes, which were consistent with isolates reported in the Influenza Research Database for this region. Three of 14 isolates contained multiple HA or NA subtypes. This study adds to the limited baseline information available for AIVs in migratory waterfowl populations on the Delmarva Peninsula, particularly prior to the highly pathogenic AIV A(H5N8) and A(H5N2) introductions to the United States in late 2014.

Delaware, Maryland↗

Understanding contaminants associated with mineral deposits

Interdisciplinary studies by the U.S. Geological Survey (USGS) have resulted in substantial progress in understanding the processes that control the release of metals and acidic water from inactive mines and mineralized areas, the transport of metals and acidic water to streams, and the fate and effect of metals and acidity on downstream ecosystems. The potential environmental effects associated with abandoned and inactive mines, resulting from the complex interaction of a variety of chemical and physical processes, is an area of study that is important to the USGS Mineral Resources Program. Understanding the processes contributing to the environmental effects of abandoned and inactive mines is also of interest to a wide range of stakeholders, including both those responsible for managing lands with historically mined areas and those responsible for anticipating environmental consequences of future mining operations. The recently completed (2007) USGS project entitled 'Process Studies of Contaminants Associated with Mineral Deposits' focused on abandoned and inactive mines and mineralized areas in the Rocky Mountains of Montana, Colorado, New Mexico, Utah, and Arizona, where there are thousands of abandoned mines. Results from these studies provide new information that advances our understanding of the physical and biogeochemical processes causing the mobilization, transport, reaction, and fate of potentially toxic elements (including aluminum, arsenic, cadmium, copper, iron, lead, and zinc) in mineralized near-surface systems and their effects on aquatic and riparian habitat. These interdisciplinary studies provide the basis for scientific decisionmaking and remedial action by local, State, and Federal agencies charged with minimizing the effects of potentially toxic elements on the environment. Current (2007) USGS research highlights the need to understand (1) the geologic sources of metals and acidity and the geochemical reactions that release them from their sources, (2) the pathways that facilitate transport from those sources, and (3) the processes that control the fate of the elements once released from the sources. Experts in the fields of economic geology, structural geology, mineralogy, geophysics, geochemistry, hydrology, ground-water modeling, microbiology, and toxicology came together for a series of studies that address these relationships on scales ranging from the microscopic to the watershed. This Circular presents results and highlights from the detailed, interdisciplinary studies that include investigations in both mining-affected areas and mineralized but unmined areas. The first section of the Circular describes laboratory and site-scale field investigations that primarily focus on mineralogic and biologic controls on the source and release of metals and acidity from mine-waste rock and hydrothermally altered areas. The second section describes a set of basin- to watershed-scale studies that not only investigate the source and release of metals and acidity but also the transport of these constituents away from the source areas. The third section is a summary of results from postremediation ecosystem monitoring. For more information on these and other project-related studies, please visit the project Web site at http://minerals.cr.usgs.gov/projects/contaminants/index.html. The Web site includes a complete bibliography and detailed descriptions of each interdisciplinary study.

Circular↗

Recovery strategies for the California clapper rail (Rallus longirostris obsoletus) in the heavily-urbanized San Francisco estuarine ecosystem

The California clapper rail ( Rallus longirostris obsoletus ), a Federal- and State-listed endangered marsh bird, has a geographic range restricted to one of the most heavily-urbanized estuaries in the world. The rail population has long been in a state of decline, although the exact contribution of each of the many contributing causes remains unclear. The rail is one of the key targets of emerging plans to conserve and restore tidal marshlands. Reduction of tidal marsh habitat, estimated at 85–95%, has been the major historical cause of rail decline. Increased predation intensity may be the more important present problem, because habitat fragmentation and alteration coupled with the invasion of the red fox have made the remaining populations more vulnerable to predators. Population viability analysis shows that adult survivorship is the key demographic variable; reversals in population fate occur over a narrow range of ecologically realistic values. Analysis of habitat requirements and population dynamics of the clapper rail in the San Francisco Estuary shows that decreased within-marsh habitat quality, particularly reduction of tidal flows and alteration of drainage, is an important barrier to population recovery. Management and restoration activities should emphasize the development of well-channelized high tidal marsh, because this is the key requirement of rail habitat. Developing effective restoration programs depends upon having information that field research will not provide. The effect of spatial pattern of reserves requires accurate estimation of the effects of prédation and inter-marsh movement, both of which are practically impossible to measure adequately. It will be necessary to develop and use simulation models that can be applied to geographic data to accomplish this task.

Landscape and Urban Planning↗

Influence of permafrost distribution on groundwater flow in the context of climate-driven permafrost thaw: Example from Yukon Flats Basin, Alaska, United States

Understanding the role of permafrost in controlling groundwater flow paths and fluxes is central in studies aimed at assessing potential climate change impacts on vegetation, species habitat, biogeochemical cycling, and biodiversity. Recent field studies in interior Alaska show evidence of hydrologic changes hypothesized to result from permafrost degradation. This study assesses the hydrologic control exerted by permafrost, elucidates modes of regional groundwater flow for various spatial permafrost patterns, and evaluates potential hydrologic consequences of permafrost degradation. The Yukon Flats Basin (YFB), a large (118,340 km 2 ) subbasin within the Yukon River Basin, provides the basis for this investigation. Model simulations that represent an assumed permafrost thaw sequence reveal the following trends with decreasing permafrost coverage: (1) increased groundwater discharge to rivers, consistent with historical trends in base flow observations in the Yukon River Basin, (2) potential for increased overall groundwater flux, (3) increased spatial extent of groundwater discharge in lowlands, and (4) decreased proportion of suprapermafrost (shallow) groundwater contribution to total base flow. These trends directly affect the chemical composition and residence time of riverine exports, the state of groundwater-influenced lakes and wetlands, seasonal river-ice thickness, and stream temperatures. Presently, the YFB is coarsely mapped as spanning the continuous-discontinuous permafrost transition that model analysis shows to be a critical threshold; thus, the YFB may be on the verge of major hydrologic change should the current permafrost extent decrease. This possibility underscores the need for improved characterization of permafrost and other hydrogeologic information in the region via geophysical techniques, remote sensing, and ground-based observations.

Alaska↗

The effects of varying injection rates in Osage County, Oklahoma, on the 2016 Mw5.8 Pawnee earthquake

The 2016 M w 5.8 Pawnee earthquake occurred in a region with active wastewater injection into a basal formation group. Prior to the earthquake, fluid injection rates at most wells were relatively steady, but newly collected data show significant increases in injection rate in the years leading up to earthquake. For the same time period, the total volumes of injected wastewater were roughly equivalent between variable‐rate and constant‐rate wells. To understand the possible influence of these changes in injection, we simulate the variable‐rate injection history and its constant‐rate equivalent in a layered poroelastic half‐space to explore the interplay between pore‐pressure effects and poroelastic effects on the fault leading up to the mainshock. In both cases, poroelastic stresses contribute a significant proportion of Coulomb failure stresses on the fault compared to pore‐pressure increases alone, but the resulting changes in seismicity rate, calculated using a rate‐and‐state frictional model, are many times larger when poroelastic effects are included, owing to enhanced stressing rates. In particular, the variable‐rate simulation predicts more than an order of magnitude increase in seismicity rate above background rates compared to the constant‐rate simulation with equivalent volume. The observed cumulative density of earthquakes prior to the mainshock within 10 km of the injection source exhibits remarkable agreement with seismicity predicted by the variable‐rate injection case.

Seismological Research Letters↗

Greater sage-grouse habitat of Nevada and northeastern California—Integrating space use, habitat selection, and survival indices to guide areas for habitat management

Executive Summary Greater sage-grouse populations ( Centrocercus urophasianus ; hereafter sage-grouse) are threatened by a suite of disturbances and anthropogenic factors that have contributed to a net loss of sagebrush-dominant shrub cover in recent decades. Declines in sage-grouse populations are largely linked to habitat loss across their range. A key component of conservation and land use planning efforts for sage-grouse involves the continued monitoring and modeling of habitat requirements and suitability across its range. The Bureau of Land Management (BLM) is addressing the management of sage-grouse habitats on BLM-authorized public lands throughout the western United States through a land use planning amendment and associated environmental impact statement (86 FR 66331). More than 25 percent of the range-wide distribution of sage-grouse is within Nevada and northeastern California, and information on sage-grouse distribution and habitat requirements is important to guide appropriate management decisions. Therefore, the BLM has identified the need for updated spatially explicit information on sage-grouse habitat in Nevada and northeastern California to guide the land use planning amendment and associated management decisions. To address this need, researchers with the U.S. Geological Survey, in close cooperation with multiple State and Federal resource agency partners, including BLM, Nevada Department of Wildlife (NDOW) and California Department of Fish and Wildlife (CDFW), sought to map sage-grouse distribution and produce example habitat designations in these states. Herein, we report results of our primary study objective, which was to map sage-grouse habitat and create example habitat management areas, based on more than a decade of location and survival data collected from marked sage-grouse across the study region coupled with lek count survey data managed by the NDOW and the CDFW. We expanded on previously developed methodology to incorporate information on habitat selection and survival during reproductive life stages and specific seasons with updated sage-grouse location and known fate datasets, while also including brood-rearing areas that are understood to be threatened and important for population persistence. We combined predictive habitat map surfaces for each life stage and season with updated information on current occupancy patterns to classify habitat based on its suitability and probability of occupancy. We carried out additional steps to delineate specific example habitat management areas, specifically (1) incorporated corridors connecting key nesting and brood-rearing habitat, (2) corrected outputs for pre-wildfire habitat conditions within areas burned in the last 16 years, and (3) masked out areas of anthropogenic development. Our methodological example of deriving habitat management areas was intended to help inform decisions by BLM and other land managers regarding conservation and management of sage-grouse. Associated data products in the form of habitat maps provide updated, detailed, and comprehensive information about the status of habitats and can be useful to partner agencies in their efforts to designate and rank habitats for this species of high conservation concern in Nevada and California, with full recognition that on-the-ground field data and local sources of information and expertise should be used in conjunction with inferences from these models.

California, Idaho, Nevada↗

A simple approach to distinguish land-use and climate-change effects on watershed hydrology

Impacts of climate change on watershed hydrology are subtle compared to cycles of drought and surplus precipitation (PPT), and difficult to separate from effects of land-use change. In the US Midwest, increasing baseflow has been more attributed to increased annual cropping than climate change. The agricultural changes have led to increased fertilizer use and nutrient losses, contributing to Gulf of Mexico hypoxia. In a 25-yr, small-watershed experiment in Iowa, when annual hydrologic budgets were accrued between droughts, a coupled water-energy budget (ecohydrologic) analysis showed effects of tillage and climate on hydrology could be distinguished. The fraction of PPT discharged increased with conservation tillage and time. However, unsatisfied evaporative demand (PET - Hargreaves method) increased under conservation tillage, but decreased with time. A conceptual model was developed and a similar analysis conducted on long-term (>1920s) records from four large, agricultural Midwest watersheds underlain by fine-grained tills. At least three of four watersheds showed decreases in PET, and increases in PPT, discharge, baseflow and PPT:PET ratios (p < 0.10). An analysis of covariance showed the fraction of precipitation discharged increased, while unsatisfied evaporative demand decreased with time among the four watersheds (p < 0.001). Within watersheds, agricultural changes were associated with ecohydrologic shifts that affected timing and significance, but not direction, of these trends. Thus, an ecohydrologic concept derived from small-watershed research, when regionally applied, suggests climate change has increased discharge from Midwest watersheds, especially since the 1970s. By inference, climate change has increased susceptibility of nutrients to water transport, exacerbating Gulf of Mexico hypoxia.

Journal of Hydrology↗

A spatiotemporal interrogation of hydrologic drought model performance for machine learning model interpretability

The predictive accuracy of regional hydrologic models often varies across both time and space. Interpreting relationships between watershed characteristics, hydrologic regimes, and model performance can reveal potential areas for model improvement. In this study, we use machine learning to assess model performance of a regional hydrologic model to forecast the occurrence of streamflow drought. We demonstrate our methodology using a regional long short-term memory (LSTM) deep learning model developed by the U.S. Geological Survey (USGS) and data from 384 streamgages across the Colorado River Basin region. Performance was assessed by clustering catchments using: (a) physical and climatological catchment attributes, and (b) streamflow drought signatures time series. We examined the association of USGS LSTM model error measures with clusters generated by both approaches to interpret meaningful spatial and temporal information about LSTM model performance. Clustering static catchment attributes identified elevation, degree of streamflow regulation, baseflow contribution, catchment aridity, and drainage area as the most influential attributes to model performance. Clustering gages by their drought signatures revealed that catchments with significant seasonal peak runoff between January and June generally exhibited better model performance. Additionally, a Random Forest classifier was trained to successfully predict LSTM model performance (F1 score of 0.72) based on physical and climatological catchment attributes. Low degree of flow regulation was identified as a key indicator of better LSTM model performance. These findings point to the opportunities for improving the USGS LSTM model performance in future hydrologic drought prediction efforts across regional and CONUS scales.

Arizona, California, Colorado, Idaho, Montana, Nev↗

Geologic map of Big Bend National Park, Texas

The purpose of this map is to provide the National Park Service and the public with an updated digital geologic map of Big Bend National Park (BBNP). The geologic map report of Maxwell and others (1967) provides a fully comprehensive account of the important volcanic, structural, geomorphological, and paleontological features that define BBNP. However, the map is on a geographically distorted planimetric base and lacks topography, which has caused difficulty in conducting GIS-based data analyses and georeferencing the many geologic features investigated and depicted on the map. In addition, the map is outdated, excluding significant data from numerous studies that have been carried out since its publication more than 40 years ago. This report includes a modern digital geologic map that can be utilized with standard GIS applications to aid BBNP researchers in geologic data analysis, natural resource and ecosystem management, monitoring, assessment, inventory activities, and educational and recreational uses. The digital map incorporates new data, many revisions, and greater detail than the original map. Although some geologic issues remain unresolved for BBNP, the updated map serves as a foundation for addressing those issues. Funding for the Big Bend National Park geologic map was provided by the United States Geological Survey (USGS) National Cooperative Geologic Mapping Program and the National Park Service. The Big Bend mapping project was administered by staff in the USGS Geology and Environmental Change Science Center, Denver, Colo. Members of the USGS Mineral and Environmental Resources Science Center completed investigations in parallel with the geologic mapping project. Results of these investigations addressed some significant current issues in BBNP and the U.S.-Mexico border region, including contaminants and human health, ecosystems, and water resources. Funding for the high-resolution aeromagnetic survey in BBNP, and associated data analyses and interpretation, was from the USGS Crustal Geophysics and Geochemistry Science Center. Mapping contributed from university professors and students was mostly funded by independent sources, including academic institutions, private industry, and other agencies.

Texas↗

Bacterial community diversity and potential eco-physiological roles in toxigenic blooms composed of Microcystis, Aphanizomenon or Planktothrix

Cyanobacterial toxicity, cyanotoxins, and their impact on aquatic ecosystems and human health are well documented. In comparison, less is known about bloom-associated bacterial communities. Co-occurring bacteria can influence bloom development, physiology and collapse, and may also provide a niche for pathogenic bacteria. Existing research focuses on the cyanosphere of Microcystis -dominated blooms, despite the increasing prevalence of filamentous genera ( Aphanizomenon and Planktothrix ). This pilot study aimed to broaden our understanding of the bacterial consortia attached to morphologically distinct cyanobacteria (coccoid and filamentous) dominating phytoplankton communities and to explore their potential roles in amplifying the impacts of cyanobacterial blooms. We investigated four shallow freshwater bodies across three continents and two climate zones: an urban pond in the USA, a dammed reservoir and a natural lake in Poland, and an urban water body in Singapore. Amplicon sequencing (16S rRNA gene) was used to characterize bacterial communities, while shotgun metagenomics identified nitrogen- and phosphorus-cycling genes to infer potential eco-physiological functions. Cyanobacteria dominated bacterioplankton assemblages at all sites (>35.6%), with bloom composition influencing toxigenic profiles. A mixed bloom of Microcystis , Snowella , and Aphanizomenon had the broadest range of cyanotoxin synthetase genes ( mcy E, cyr J, ana F and sxt A). Microcystis blooms correlated with increased Roseomonas , while Planktothrix co-occurred with Flavobacterium – both bacteria likely contribute to nutrient-cycling within blooms and represent potential opportunistic pathogens for aquatic organisms and humans. The Microcystis cyanosphere exhibited the highest number of significant positive correlations with bacteria (19 relations), compared to Planktothrix and Aphanizomenon (11 and 2 relations, respectively). Non-diazotrophic blooms of Microcystis and Planktothrix showed greater abundances of nitrogen – ( ure B, gln A, nar B, and nar HZ) and phosphorus-cycling genes ( pho BHPR and ppk 1), indicating a strong dependence on associated bacteria for nutrient acquisition compared to diazotrophic Aphanizomenon . These findings suggest that Aphanizomenon -dominated blooms may be sustained by simpler microbiomes. Our results provide preliminary evidence of cyanosphere heterogeneity potentially shaped by the dominance or coexistence of three morphologically and eco-physiologically distinct genera of cyanobacteria. A comprehensive knowledge of the taxonomy and functional roles of bloom-associated microbiomes is therefore essential to understand bloom activity, evaluate the environmental threat, and develop effective strategies for prevention and mitigation.

Frontiers in Microbiology↗

Lateral carbon exports from drained peatlands: An understudied carbon pathway in the Sacramento-San Joaquin Delta, California

Degradation of peatlands via drainage is increasing globally and destabilizing peat carbon (C) stores. The effects of drainage on the timing and magnitude of lateral C losses from degraded peatlands remains understudied. We measured spatial and temporal variability in lateral C exports from three drained peat islands in the Sacramento‐San Joaquin Delta in California across the 2017 and 2018 water years using measurements of dissolved inorganic C (DIC), dissolved organic C (DOC), and suspended particulate organic C (POC) concentration combined with discharge. These measurements were supplemented with stable isotope data (δ 13 C‐DIC, δ 13 C‐POC, δ 15 N‐PON, and δ 2 H‐H 2 O values) to provide insight into hydrological and biogeochemical controls on lateral C exports from drained peatlands. Drainage DOC and DIC concentrations were seasonally variable with the highest values in the winter rainy season, when discharge was also elevated. Seasonal differences in the mobilization of dissolved C appeared to result from changing water sources and water table levels. Peat island drainage C contributions to surrounding waterways were also greatest during the winter. Although temporal variability in C cycling processes and trends were generally similar across islands, baseline drainage DIC, DOC, and POC concentrations were spatially variable, likely a result of sub‐island‐scale differences in soil organic matter content and hydrology. This spatial variability complicates system‐wide assessments of C budgets. Net lateral C exports were water year dependent and comparable to previously published vertical C emission rates for this system. This work highlights the importance of including lateral C exports from drained peatlands in local and regional C budgets.

California↗

White-nose syndrome in bats: U.S. Geological Survey updates

White-nose syndrome (WNS) is a devastating disease that has killed millions of hibernating bats since it first appeared in New York in 2007 and has spread at an alarming rate from the northeastern to the central United States and Canada. The disease is named for the white fungus Geomyces destructans that infects the skin of the muzzle, ears, and wings of hibernating bats. The U.S. Geological Survey (USGS) National Wildlife Health Center (NWHC), the USGS Fort Collins Science Center, the U.S. Fish and Wildlife Service, and other partners continue to play a primary role in WNS research. Studies conducted at the NWHC led to the discovery (Blehert and others, 2009), characterization, and naming (Gargas and others, 2009) of the cold-loving fungus G. destructans and to the development of standardized criteria for diagnosing the disease (Meteyer and others, 2009). Additionally, scientists at the NWHC have pioneered laboratory techniques for studying the effects of the fungus on hibernating bats (Lorch and others, 2011). To determine if bats are affected by white-nose syndrome, scientists look for a characteristic microscopic pattern of skin erosion caused by G. destructans (Meteyer and others, 2009). Field signs of WNS can include visible white fungal growth on the bat's muzzle, wings, or both, but these signs alone are not a reliable disease indicator - laboratory examination and testing are required for disease confirmation. Infected bats also arouse from hibernation more frequently than uninfected bats (Warnecke and others, 2012) and often display abnormal behaviors in their hibernation sites, such as congregating at or near cave openings and daytime flights during winter. These abnormal behaviors may contribute to the bat's accelerated consumption of stored fat reserves, causing emaciation, a characteristic documented in some of the bats that die with WNS. During hibernation, bats likely have lowered immunity (Bouma and others, 2010), which may facilitate the ability of G. destructans to colonize and damage large areas of wing membrane (fig. 2). A current hypothesis suggests that erosion or ulceration of wing membrane caused by the fungus has the potential to alter the physiology of hibernating bats, resulting in fatal disruption of hydration, electrolyte balance, circulation, and thermoregulation (Cryan and others, 2010). Current estimates of bat population declines in the northeastern United States since the emergence of WNS are over 80 percent (Turner and others, 2011). This sudden and widespread mortality associated with WNS is unprecedented in hibernating bats, among which large-scale disease outbreaks have not been previously documented. It is unlikely that species of bats affected by WNS will recover quickly because most are long-lived and have only a single pup per year. Consequently, repopulation after widespread mortality of breeding adults will be a slow process. Worldwide, bats play essential roles as pollinators, seed dispersers, and as primary consumers of insects. The true ecological consequences of the recent large-scale reductions in populations of hibernating bats are not yet known. However, farmers might feel the impact. A recent economic analysis indicated that insect control services (ecosystem services) provided by bats to U.S. agriculture is valued between 4 to 50 billion dollars nationwide per year (Boyles and others, 2011). The number of North American bats estimated to have died from WNS thus far had the capacity to consume up to 8,000 tons of insects per year (Boyles and others, 2011). The area of North America affected by WNS continues to expand. Within the last 2 years, the disease has been confirmed in several Central States, including Alabama, Indiana, Kentucky, Ohio, Tennessee, and Missouri. High mortality of bats has not yet been reported at these locations, and it remains to be seen if WNS will develop and manifest in other States with the same severity as that in the Northeast.

Alabama;Connecticut;Delaware;Illinois;Indiana;Iowa↗