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Geospatial PDF map of the compilation of GIS data for the mineral industries of select countries in the Indo-Pacific region

Introduction In 2024, the U.S. Geological Survey's (USGS) National Minerals Information Center (NMIC) completed the project titled "Compilation of geospatial data for the mineral industries of select countries in the Indo-Pacific." This project aimed to leverage the expertise and capabilities of the NMIC to collect, synthesize, and interpret geospatial data to inform on the extractive resources of select countries in the Indo-Pacific region (area of study) and expand the NMIC's understanding on the impact of mineral industry of these countries in the global economy. The 19 countries of interest in the Indo-Pacific study area include Bangladesh, Bhutan, Brunei, Burma, Fiji, Malaysia, Mongolia, Nauru, New Caledonia, New Zealand, Papua New Guinea, Philippines, Singapore, Solomon Islands, South Korea (Republic of Korea), Sri Lanka, Taiwan, Timor-Leste, and Vietnam. The primary objective of this effort was to create a fully attributed Geographic Information System (GIS) portraying existing mining infrastructure, resources, and production capacities across the Indo-Pacific study area as well as highlight mineral production and processing sites under development and potential areas of future extractive industry operations and development in the region. The compiled GIS geodatabase with supporting documentation including comprehensive metadata was published as a USGS data release titled "Compilation of Geospatial Data (GIS) for the Mineral Industries of Select Countries in the Indo-Pacific." This georeferenced portable document format (GeoPDF) map sheet presents a new geographic information product containing a partial representation of the GIS data. This GeoPDF map provides a visual comparison of the distribution of mineral industry GIS data, which contributes to a deeper understanding of the intersections and complexities of the extractive industries within the select countries in the Indo-Pacific region.

Open-File Report

Foundational uncertainties in terminal Ediacaran chronostratigraphy revealed by high-precision zircon U-Pb geochronology of the Nama Group, Namibia

The Nama Group of southern Namibia and northwestern South Africa hosts the best-dated mixed carbonate-siliciclastic foreland basin succession of the terminal Ediacaran [ca. 551 million years (Ma) ago to <538 Ma] and is key for resolving the chronology of early metazoan evolution. Numerous silicified volcanic tuff interbeds are present, but differing interpretations regarding the fidelity of their ages lead to different regional stratigraphic correlations, especially for the Urusis Formation of the Schwarzrand Subgroup. An expanded record of the Urusis Formation is found in the Swartpunt area of southern Namibia, which has yielded an important metazoan biota. But the succession in this area is preserved as a series of thrusts at the leading edge of the Gariep orogenic belt and zircon U-Pb data show systematic age repetition. We use regional stratigraphic and structural mapping, integrated with carbonate carbon isotope (δ 13 C carb ) chemostratigraphy and high-precision radioisotope U-Pb zircon geochronology from outcrop and recently acquired drill core to develop a temporally calibrated basin-wide depositional model. This integrated dataset either reflects complex zircon reworking, inheritance, or potential analytical biases (Scenario 1) or the presence of a Gariep-related cryptic décollement within the Spitskop Member that has resulted in stratigraphic repetition (Scenario 2). We investigate the evidence for and against both scenarios and consider their implications for stratigraphic and δ 13 C carb correlations between the Swartpunt area and coeval exposures along the Orange River border with South Africa. Given that these issues are in an area that hosts numerous silicified ash beds and extensive exposure, an inability to confidently discount either scenario highlights a level of compounding uncertainty in zircon U-Pb geochronology that must be considered when attempting to build global chronostratigraphic frameworks. Scenario 1 implies that some of the weighted mean ages and Bayesian eruption ages from the Swartpunt area may be >1 Myr older than the depositional age of their respective ash beds when assuming existing stratigraphic correlations. If this scenario is preferred, then a cautious approach would be to consider all weighted mean zircon U-Pb ages from ash beds to reflect maximum depositional ages. Both scenarios support deposition of the Huns Member >540 Ma in the Swartpunt area if the oldest weighted mean age reported here represents a near-depositional age, which has significant implications for the temporal calibration of important terminal Ediacaran ichnofossil assemblages and future cyclostratigraphic studies. Stratigraphic correlations common to both scenarios allow us to temporally calibrate a basin evolution model for the Nama Group. Temporal trends in initial hafnium isotope (εHf) compositions of zircon grains from ash beds throughout the succession may support progressive crustal thickening associated with underplating of the Damara orogenic belt along the northern periphery of the Kalahari craton from ca. 547 Ma to ca. 538 Ma. The compilation of new and published zircon U-Pb ages may also imply that the locus of carbonate platform development migrated from north to south (present co-ordinates), tracking the migration of foredeep subsidence.

Earth-Science Reviews

Disparate groundwater responses to wildfire

Post-wildfire investigations of groundwater response reveal a range of outcomes, varying from substantial increases to notable decreases in recharge and baseflow, with some studies indicating negligible or short-lived effects. This review assesses these varied responses within five critical categories: climate, vegetation, hydrogeology, fire characteristics, and the cryosphere, examining both short-term (within 2 years) and intermediate (2–10 years post-fire) effects. Despite considerable variability, some consistent patterns emerge. For instance, in hydroclimatic settings where water input and evaporative demand cycles are out of sync, post-wildfire groundwater responses tend to be positive (i.e., increased flux or storage), whereas under low fire severity conditions or in vegetation types that quickly recover, groundwater responses tend to be negative (i.e., decreased flux or storage). We synthesize relevant findings into a compendium of testable hypotheses aimed at explaining the spatiotemporal variability in observed post-wildfire groundwater responses. A recurring theme is the critical influence of the pre-wildfire groundwater regime on expected response and recovery. We identify opportunities for specific improvements in post-wildfire monitoring and modeling that would further advance capabilities to predict groundwater response. A key area for further research is understanding how wildfire effects on snow dynamics and other cryospheric processes translate to changes in groundwater.

WIREs Water

Characterizing the scale of regional landslide triggering from storm hydrometeorology

Rainfall strongly affects landslide triggering; however, understanding how storm characteristics relate to the severity of landslides at the regional scale has thus far remained unclear, despite the societal benefits that would result from defining this relationship. As mapped landslide inventories typically cover a small region relative to a storm system, here we develop a dimensionless index for landslide-inducing rainfall, A * , based on extremes of modeled soil water relative to its local climatology. We calibrate A * using four landslide inventories, comprising over 11 000 individual landslides over four unique storm events, and find that a common threshold can be applied to estimate regional shallow-landslide-triggering potential across diverse climatic regimes in California (USA). We then use the spatial distribution of A * , along with topography, to calculate the landslide potential area (LPA) for nine landslide-inducing storm events over the past 20 years, and we test whether atmospheric metrics describing the strength of landfalling storms, such as integrated water vapor transport, correlate with the magnitude of hazardous landslide-inducing rainfall. We find that although the events with the largest LPA do occur during exceptional atmospheric river (AR) storms, the strength of landfalling atmospheric rivers does not scale neatly with landslide potential area, and even exceptionally strong ARs may yield minimal landslide impacts. Other factors, such as antecedent soil moisture driven by storm frequency and mesoscale precipitation features within storms, are instead more likely to dictate the patterns of landslide-generating rainfall throughout the state.

California

The eruptive behavior of distributed volcanism forming low shield edifices—A case study of Sentinel-Arlington volcanic field, U.S.A.

Distributed volcanic fields are present in various tectonic settings worldwide, and their characteristics reflect differing influences from magmatic and tectonic processes. In the southwestern United States alone, there are 37 Quaternary distributed volcanic fields. After the primary period of extensional tectonics in the southern Basin and Range 15–5 million years ago, the Sentinel-Arlington volcanic field developed in southwestern Arizona between 4 and 1 million years ago. The Sentinel-Arlington volcanic field consists primarily of low relief shield volcanoes, a type of distributed volcanism with poorly understood temporal evolution. The Sentinel-Arlington volcanic field is less than 200 kilometers (km) from the Colorado Plateau, Gulf of California, and southern San Andreas Fault system. This work identifies and examines controls on the emplacement of the Sentinel-Arlington volcanic field by documenting shallow and surficial structures as well as eruption characteristics and style through time. The Sentinel-Arlington volcanic field consists of 21 volcanoes with a total of 33 vents over an area of about 770 square kilometers (km 2 ). The prominence of low relief shield volcanoes may be explained by ascent of basaltic magmas through thin Basin and Range crust, without much crustal contamination, and low viscosities common to mafic compositions. Typical eruption characteristics involve the construction of low relief shield volcanoes followed by Strombolian fissure eruptions at the summits or near-summit medial areas that produce scoria lapilli, which may weld to form agglomerate. The total lifetime erupted volume of about 4.3 cubic kilometers (km 3 ) represents an average eruptive flux of approximately 2x10 -3 km 3 per thousand years (k.y.). This erupted volume is low relative to Neogene basaltic intraplate distributed volcanic fields worldwide, which typically range from 10 -3 to 1 km 3 k.y. -1 . Sentinel-Arlington volcanic field eruptions were likely triggered by intermittent rejuvenation of transient magmatic zones that exist in thinned crust. Instantaneous flux from point sources feeding the lava flows is estimated to be on the order of 10 -1 to 10 cubic meters per second.

Arizona

Parameter ESTimation with the Gauss–Levenberg–Marquardt algorithm: An intuitive guide

In this paper, we review the derivation of the Gauss–Levenberg–Marquardt (GLM) algorithm and its extension to ensemble parameter estimation. We explore the use of graphical methods to provide insights into how the algorithm works in practice and discuss the implications of both algorithm tuning parameters and objective function construction in performance. Some insights include understanding the control of both parameter trajectory and step size for GLM as a function of tuning parameters. Furthermore, for the iterative Ensemble Smoother (iES), we discuss the importance of noise on observations and show how iES can cope with non-unique outcomes based on objective function construction. These insights are valuable for modelers using PEST, PEST++, or similar parameter estimation tools.

Groundwater

Opportunities for the U.S. Geological Survey’s National Seismic Hazard Model to improve seismic risk assessment of critical infrastructure.

As fragility and risk modeling techniques and computational capabilities evolve, complemented by moving toward more routine and systematic seismic risk assessment of all buildings and critical infrastructure, the authors pose a few critical questions to investigate how the U.S. Geological Survey (USGS) National Seismic Hazard Models (NSHMs) can be used and enhanced further to serve such issues. In this paper, we use three examples from multiple sectors to (1) identify the role of USGS NSHMs in evaluating seismic risks to critical infrastructure, (2) quantify potential impacts from NSHM enhancements (i.e., [i] hazard curves for the vertical component of ground motion, [ii] stochastic event sets, and [iii] maps of probabilistic ground failure hazards), and (3) clarify the feasibility of relevant NSHM improvements. We illuminate that NSHMs are commonly used in location-specific performance assessments, whereas earthquake effects on critical infrastructure can be widespread across large geospatial regions. Further, we found that without the NSHM extensions considered here, risk can be severely underestimated, e.g., neglecting ground failure hazards can underestimate regional loss by a factor of two or more. Although many challenges remain, we developed example prototypes to clarify the feasibility of the NSHM extensions, which can facilitate improved management of risks to critical infrastructure.

Earthquake Spectra Journal

Agricultural return flow dynamics on a reach of the East River, Colorado, as assessed by mass balance

The U.S. Geological Survey, in cooperation with the Upper Gunnison River Water Conservancy District, studied historical streamflow in a reach of the East River, Colorado, to gain a preliminary understanding of return flow dynamics. Return flow is agricultural irrigation water that is not consumed by evapotranspiration and instead reaches streams by surface and subsurface flow paths. The study reach had a contributing area of 50 square miles and contained 5.23 square miles of pastures irrigated with water diverted from the East River and its tributaries. By comparing upstream inflows to downstream outflows, the net water balance of the study reach from 1994 to 2023 was assessed. Two general hydrologic conditions for the study reach were identified. One hydrologic condition was characterized by a net loss or consumption of water, termed here as general deficit. This general deficit condition extended about 16 years, from 1997 to 2012. During general deficit years, there was usually a notable net loss of streamflow from April through July, and a small net gain, possibly related to return flows, occurred in August about 75 days after the minimums for losses. The second hydrologic condition was characterized by a net gain of water, termed here as general surplus. This second condition extended about 10 years, from 2014 to 2023. During general surplus years, two separate transitions from net loss to net gain commonly occurred during June through August. Losses during general surplus years were smaller than losses during general deficit years, the respective gains were larger, and times between losses and gains were about 18 and 22 days. Differences between the two hydrologic conditions could reflect interactions among irrigation water, available capacity to store additional shallow groundwater, and streamflow. However, deciphering the causes for the shifts between the two general hydrologic conditions was beyond the scope of this report.

Colorado

Testing megathrust rupture models using tsunami deposits

The 26 January 1700 CE Cascadia subduction zone earthquake ruptured much of the plate boundary and generated a tsunami that deposited sand in coastal marshes from northern California to Vancouver Island. Although the depositional record of tsunami inundation is extensive in some of these marshes, few sites have been investigated in enough detail to map the inland extent of sand deposition and depict variability in tsunami deposit thickness and grain size. We collected 129 cores in marshes of the Salmon River estuary in Oregon and reanalyzed 114 core logs from a 1987–88 study that mapped the inland extent of circa 1700 CE sandy tsunami deposits. The ca. 1700 CE tsunami deposit in the Salmon River estuary is easily recognized in cores ≤1 m deep in which a buried marsh peat is overlain by a well sorted sand bed with a sharp lower contact that thins and fines inland. We use tsunami deposit data and models of sandy tsunami sediment transport (using Delft3D-FLOW) to test 15 rupture models that could represent a ca. 1700 CE earthquake. At least 12–16 m of slip offshore of the Salmon River, which results in 0.8–1.0 m of coastal coseismic subsidence, is required to match the ca. 1700 CE sand deposit's inland extent, which is consistent with models of heterogeneous megathrust slip in ca. 1700 CE. Our methods of detailed tsunami deposit mapping, combined with sediment transport modeling, can be used to test models of megathrust ruptures and their tsunamis to potentially improve earthquake and tsunami hazard assessments.

JGR Earth Surface

A newly identified creeping strand of the Concord fault, San Francisco Bay Area

The Concord fault constitutes a major branch of the Pacific–North America transform plate boundary in Northern California, bridging the strike‐slip Bartlett Springs ‐ Green Valley Fault system to the north with the Greenville and Calaveras Faults to the south. Like many faults in the San Francisco Bay Area its long‐term slip is partially accommodated by aseismic slip (creep). Although creep has been recognized and monitored on the northern half of the fault for decades, the precise location of the southern half of the fault and its slip rate—whether accommodated seismically or aseismically—has remained enigmatic. How slip transfers between the Concord and Greenville or Calaveras faults to the south remains an outstanding question. New field observations presented here indicate that the active trace of the fault south of downtown Concord is not where previously interpreted and is indeed actively creeping. We report observations of shallow creep continuing >7 km farther south along the Concord fault than previously reported, along a fault strand not previously recognized for most of its length. This is evident as right‐laterally deflected concrete curbs and sidewalk slabs on both sides of every street that crosses the fault at a high angle in southeast Concord and northeast Walnut Creek. We document the magnitude and location of these deflections to estimate accumulated right‐lateral aseismic slip expressed in engineered structures. Offsets of these piercing lines range from 8 to 18 cm, over widths varying from narrow breaks along centimeter‐scale concrete joints to 10‐m‐wide zones of deflection. Significantly, this active trace is ∼400 m west of where the Quaternary active trace has previously been inferred, placing it within—rather than bounding—the built area of suburban Concord. Slip along the fault has already caused infrastructure damage. These results revise our understanding of the southern Concord fault and help constrain its seismic potential.

California

Compact seismicity bursts have different characteristics from regional seismicity

Earthquakes tend to cluster, developing into sequences driven by stress perturbations and transient fault-zone processes. Depending on the driving process, earthquake sequences show differing behaviors. This variability challenges our ability to observe or distinguish these driving processes in high resolution. Here we systematically identify seismicity bursts throughout southern California using new statistical methods and examine their causes with other independent geophysical observations. Seismicity bursts are defined as statistically significant seismicity rate anomalies. Our approach has the advantage of being data driven, depending on few earthquake occurrence assumptions. We find abundant seismicity bursts across southern California, most frequently occurring along the San Jacinto Fault and in the Salton Sea and Coso geothermal fields. These seismicity bursts are highly compact in space and time, often encompassed by a 5 km radius and have durations less than 10 hr. Many of the seismicity bursts have their largest earthquake near the beginning of the sequence, but the largest earthquake is usually not an obvious mainshock. We utilize a variety of independent geophysical data sets to analyze the characteristics of the seismicity bursts, finding that the seismicity bursts have low b-values, low spectral stress drops, and varied stress ratios compared to regional seismicity. These differences suggest that seismicity bursts are driven by transient processes acting frequently across fault networks.

California

Groundwater budget for the surficial aquifer surrounding Lake Nokomis, Minneapolis, Minnesota

During prolonged periods of above-average precipitation, rising groundwater levels have the potential to cause damage to and interfere with underground infrastructure and building foundations. To understand the relations between precipitation and groundwater in the vicinity of Lake Nokomis, the U.S. Geological Survey, in collaboration with the University of Minnesota, quantified five components of the groundwater budget: groundwater recharge, change in surficial aquifer storage, surficial aquifer groundwater discharge to Lake Nokomis, groundwater evapotranspiration, and groundwater discharge to underlying bedrock aquifers. Field data, geologic records, and empirical calculation methods were used to quantify groundwater budget components for April 2023 through April 2024. Lake water budget data indicate that Lake Nokomis is a flowthrough system during periods with no outflow through the weir, with groundwater inputs equal to outputs. Roughly 40 percent of precipitation that fell in the study area was added to the surficial aquifer as recharge. Uncertainty in the vertical hydraulic conductivity resulted in wide-ranging estimates (spanning three orders of magnitude) of water discharging from the surficial aquifer to the underlying bedrock aquifer. Drought conditions persisted for the duration of this study and were not representative of the conditions that motivated this study. This study is a start towards understanding relations between precipitation, Lake Nokomis levels, and groundwater levels that could affect local underground infrastructure.

Minnesota

Computation of regional groundwater budgets for the Virginia Coastal Plain aquifer system

Computation of detailed groundwater flow budgets for subdivisions of the Virginia Coastal Plain aquifer system has enabled quantification and more thorough understanding of groundwater flow within this important water resource. A zone budget analysis based on previously published groundwater models of the Virginia Coastal Plain and Virginia Eastern Shore indicates that groundwater conditions vary substantially throughout the Coastal Plain aquifer system because of local variations in hydrogeology and historical and ongoing variations in groundwater use and management. Decades of substantial groundwater withdrawal from the Coastal Plain aquifer system have altered groundwater flow from predevelopment conditions. Rates of sustainable withdrawal are limited because the downward groundwater flow rate into confined aquifers is a relatively small part of the total groundwater budget for the aquifer system compared to the rate of recharge at the land surface. Analyses of groundwater budgets from the Virginia Coastal Plain model indicate that groundwater flow is generally outward from the surficial aquifer to rivers and coastal waterbodies and downward through a series of underlying aquifers and confining units to the Potomac aquifer, which is the deepest aquifer and the source of most groundwater withdrawals. Downward flow into the Potomac aquifer is estimated to be only 7 percent of total net precipitation-derived net recharge at the land surface but makes up about 66 percent of inflow to the aquifer in Virginia, with much of the remaining inflow occurring laterally from outside of defined groundwater budget regions in Virginia. For several decades prior to 2010, high rates of withdrawal from the Potomac aquifer resulted in substantial decline in groundwater storage in the aquifer and in most overlying aquifers and confining units. From 2010 to 2023, rates of withdrawal substantially lower than the historical maximum resulted in small net increases in groundwater storage in the confined aquifer system for most regions of the Virginia Coastal Plain. Nevertheless, for the same period, groundwater storage for the entire model domain continues to incrementally decline, indicating that storage recovery in Virginia is offset by a continued decrease in storage in areas beneath the Chesapeake Bay or adjacent areas of Maryland and North Carolina. Withdrawals from the Potomac aquifer have induced substantial downward flow which is a large part of groundwater budgets for confined aquifers such as the Potomac. For the most recent simulated conditions (2023) downward groundwater flow continues, but because vertical flow rates are a function of the difference between water pressure in the upper surficial systems and lower confined units, rates of downward flow are lower than those in earlier decades as the confined water levels partially recover from larger groundwater withdrawals in the past. Geographically, groundwater flow is generally inward from perimeter regions of the Virginia Coastal Plain toward central regions with the largest withdrawal rates. Groundwater inflow from coastal regions could be contributing to saltwater intrusion, even though that was not measured in this study. Analyses of groundwater budgets from the Virginia Eastern Shore peninsula, a geographic region of the Virginia Coastal Plain, indicate that groundwater flow for that isolated aquifer system is generally outward from the surficial aquifer to coastal water bodies and downward into the confined Yorktown-Eastover aquifer system, which is the source of most withdrawals. Downward groundwater flow into the confined Yorktown-Eastover aquifer system is estimated to be less than 2 percent of total recharge and less than 9 percent of net recharge at the water table but makes up more than 93 percent of all inflow to the confined aquifer system. Decades of substantial but relatively consistent groundwater withdrawals have induced greater downward flow rates into the confined aquifer system but also have resulted in loss of groundwater from storage. For the most recent simulated period (2023), estimated storage loss accounts for slightly under 7 percent of withdrawals from the confined aquifer system. The reported withdrawal rate for this period from the confined Yorktown-Eastover system is near the highest reported rate for the Virginia Eastern Shore, which means that the storage depletion is expected to continue, even though groundwater levels appear to be relatively stable. Estimated groundwater flow rates upward from the confining unit underlying the Yorktown-Eastover system and low rates of inflow from coastal water bodies underscore ongoing concerns about up-coning and lateral intrusion of salty groundwater.

Virginia

Exploration for blind geothermal systems in the eastern Great Basin of Utah: An update on the “Lund North” INGENIOUS detailed study site

Existing geothermal production in Utah is commonly collocated with surficial expressions of geothermal heat including active hot springs and hot spring deposits. However, geothermal potential across the Great Basin region is thought to be much higher for hidden or blind geothermal systems. Accordingly, exploration techniques that can locate geothermal resources that lack surface thermal features could support future development of these systems. The goal of the INGENIOUS project is to reduce exploration risk and discover new, economically viable hidden geothermal systems in the Great Basin region. This paper summarizes the efforts and preliminary results of blind geothermal resource prospecting in Utah as part of the larger INGENIOUS project. The Lund North site in the Basin and Range province of southwest Utah was designated as the fourth detailed study site for the project. The site was initially identified from the preliminary Play Fairway Analysis (PFA) geothermal favorability map, which is based on various data elements, and the identification of favorable structural settings across Utah. This site contains existing legacy data including a thermal gradient borehole with a heat-flow value exceeding 220 mW/m 2 . New data collected at this site include terrestrial gravity, magnetotellurics, transient electromagnetics, fluid geochemistry, geologic mapping, UAV-based lidar, paleomagnetism, aeromagnetic surveys, and a shallow temperature survey. Preliminary data and model interpretations corroborate the presence of a large, east-dipping, northeast-southwest-trending normal fault on the edge of a typical Basin and Range graben. Quaternary fault mapping refined by high-resolution lidar surveys suggests a complex step over fault geometry. Utilizing multi-disciplinary datasets for further site assessment at Lund North will facilitate the development of a local-scale PFA and geothermal conceptual model. This new data will be used to site successive thermal gradient drilling to verify heat flow with temperatures at depth at the Lund North site and further investigate the existence of a local geothermal system.

Utah

Extremophile hotspots linked to containerized industrial waste dumping in a deep-sea basin

Decaying barrels on the seafloor linked to DDT contamination have raised concerns about the public health implications of decades old industrial waste dumped off the coast of Los Angeles. To explore their contents, we collected sediment cores perpendicular to five deep-sea barrels. The concentration of DDT and its breakdown products were highly elevated relative to control sites yet did not vary with distance from the barrels, suggesting that they were not associated with the contamination. Sediment cores collected through white halos surrounding three barrels were enriched in calcite and had elevated pH. The associated microbial communities were low diversity and dominated by alkalophilic bacteria with metagenome-assembled genomes adapted to high pH. A solid concretion sampled between a white halo and barrel was composed of brucite, a magnesium hydroxide mineral that forms at high pH. Based on these findings, we postulate that leakage of containerized alkaline waste triggered the formation of mineral concretions that are slowly dissolving and raising the pH of the surrounding sediment pore water. This selects for taxa adapted to extreme alkalinity and drives the precipitation of “anthropogenic” carbonates forming white halos, which serve as a visual identifier of barrels that contained alkaline waste. Remarkably, containerized alkaline waste discarded >50 years ago represents a persistent pollutant creating localized mineral formations and microbial communities that resemble those observed at some hydrothermal systems. These formations were observed at one-third of the visually identified barrels in the San Pedro Basin and have unforeseen, long-term consequences for benthic communities in the region.

California

Transcriptional changes in wild Yukon River Chinook Salmon associated with Ichthyophonus infections

Objective We compared differentially expressed genes in Chinook Salmon Oncorhynchus tshawytscha with three divergent Ichthyophonus statuses (undetected, subclinical infections, or clinical disease; n = 100) to investigate associated transcriptomic responses. Disease associated with the fish parasite Ichthyophonus sp. was first diagnosed in adult Chinook Salmon from the Yukon River in the late 1980s and has subsequently been implicated in premature host mortality. Methods Chinook Salmon tissue sample collections and Ichthyophonus infection data were leveraged from a multi-agency collaboration during summer 2022 at three locations along the main-stem Yukon River that spanned nearly 2,000 km of freshwater migration (lower, middle, and upper river). We sequenced the transcriptome and compared this to infection status based on routine diagnostic procedures. Results Among the 17,569 genes for which messenger RNA was detected, we identified a transcription signature in the skeletal muscle that was associated with Ichthyophonus infections and included 53 differentially expressed genes. The differentially expressed genes and their pathways included those known for involvement in immune functions, energy synthesis, cellular breakdown, and reproduction—all processes that are known to be influenced by senescence during spawning migrations. Conclusions Results demonstrate a clear transcriptional difference between diseased fish (clinical disease group) and those in which Ichthyophonus was undetected, including identifying candidate markers for infection in this population. These results provide a foundation for development of nonlethal biomarkers to evaluate potential Ichthyophonus infections in Chinook Salmon based on gene transcription, protein products, or gene variants (e.g., polymorphisms).

Journal of Aquatic Animal Health

Advancing outreach effectiveness to improve conservation practice adoption

Agricultural conservation practices are central to achieving Chesapeake Bay watershed restoration goals, yet long-term adoption remains challenging even when practices are technically effective and financial assistance is available. Adoption is not a single decision, but a staged and context-dependent process. Awareness and willingness to commitment, implementation, and persistence, are all important. Progress along this pathway is influenced by interacting factors such as knowledge, attitudes, beliefs, social norms, trust, perceived risk, farm characteristics, and practical constraints. Improving adoption requires outreach strategies that respond to the specific factors limiting progress at each stage rather than relying on a one-size-fits-all approach.

Chesapeake Bay watershed

Groundwater response to managed aquifer recharge at the Southeast Houghton Artificial Recharge Project in Tucson, Arizona

Managed aquifer recharge is a widespread practice for storing water in the subsurface as groundwater. At a managed aquifer recharge facility in southern Arizona, groundwater-level and repeat microgravity data were collected to monitor aquifer response. These data were used to inform parameter identification for an unsaturated-zone flow model used to simulate the recharge process. The facility, the Southeast Houghton Artificial Recharge Project (SHARP), consists of 3 surface basins (about 27,600 square meters [6.8 acres] total surface area) where recycled water is distributed in recharge cycles lasting several months, with dry periods in between. During the study period, December 2020–December 2022, Tucson Water (the City of Tucson’s water utility) reported 6.56×10 6 cubic meters of water (5,320 acre-feet) recharged. Monitoring included groundwater-level observations at 3 monitoring wells and repeat microgravity measurements at as many as 22 locations (some stations were destroyed between surveys). Six gravity surveys were carried out using absolute- and relative-gravity meters. Large gravity increases, more than 250 microgals, were observed during the first repeat survey, 3.5 months after the start of recharge, but only in the immediate vicinity of the recharge basins. Data show that water moved downward to the water table, and storage changes in the unsaturated zone away from the facility were likely minimal. Gravity decreased at stations more than 1 kilometer from the facility, consistent with regional groundwater-level changes. Groundwater-level increases in wells adjacent to the recharge basins began 2 months after the second repeat gravity survey, and 5.5 months after recharge began. Unsaturated-zone flow modeling was carried out using software that simulates water movement and parameter estimation. Model calibration was carried out by minimizing an objective function calculated from the differences between simulated and observed groundwater levels, and between simulated and observed repeat microgravity data. Including repeat microgravity data in the objective function reduced the uncertainty in estimated parameter values for saturated hydraulic conductivity and saturated water content. Modeling indicated that the unsaturated zone between the recharge basins and the water table does not become saturated even after 685 days of simulated infiltration. This gradual wetting may account for increasing infiltration rates over time, as hydraulic conductivity increases with increasing water content. Unsaturated-zone water content decreased rapidly between recharge cycles. Model-simulated groundwater mounding extended about 1 kilometer from the center of SHARP after the 685-day period following the onset of recharge.

Arizona