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At least 1,459 records · Page 81Linked to original sources
USGS2010

Stomach emptiness in fishes: Sources of variation and study design implications

This study summarizes fish stomach content data from 369,000 fish from 402 species in 1,096 collections and reports on the percentage of individuals with empty stomachs. The mean percentage of individuals with empty stomachs among all species, locations, habitats, seasons, regions, and collection methods was 26.4%. Mean percentage of individuals with empty stomachs varied significantly among fish collection gear types, taxonomic orders, trophic groups, feeding behaviors, and habitats, and with species length at maturity. Most of the variation in percentage of individuals with empty stomachs was explained by species length at maturity, fish collection gear type, and two autecological factors: trophic group (piscivore percentage of individuals with empty stomachs > non-piscivore percentage of individuals with empty stomachs) and feeding habitat (water column feeder percentage of individuals with empty stomachs > benthic feeder percentage of individuals with empty stomachs). After accounting for variation with fish length, the percentage of individuals with empty stomachs did not vary with the stomach removal collection method (dissection vs. gastric lavage), feeding time (diurnal or nocturnal), or time of collection (day or night). The percentage of individuals with empty stomachs was similar between fresh and saltwater fish, but differed within finer habitat classifications and appeared to follow a general prey availability or productivity gradient: percentage of individuals with empty stomachs of open ocean collections > estuary collections, lentic > lotic, and pelagic > littoral. Gear type (active or passive) was the most influential factor affecting the occurrence of empty stomachs that can be readily controlled by researchers.

Reviews in Fisheries Science↗
USGS2017

Movements of Atlantic Sturgeon of the Gulf of Maine inside and outside the geographically defined Distinct Population Segment

Identification of potential critical habitat, seasonal distributions, and movements within and between river systems is important for protecting the Gulf of Maine (GOM) Distinct Population Segment of Atlantic Sturgeon. To accomplish these objectives, we captured Atlantic Sturgeon in four GOM rivers (Penobscot, Kennebec system, Saco, and Merrimack), and tagged 144 (83.3–217.4 cm TL) internally with uniquely coded acoustic transmitters. Tagged fish were detected between 2006 to 2014 by primary receiver arrays deployed in the four GOM rivers or opportunistically on a secondary group of receivers deployed within the GOM and along the continental shelf. Atlantic Sturgeon tagged in the four rivers were documented at three spawning areas in the Kennebec system in June and July, including one that became accessible in 1999 when the Edwards Dam was removed. After being tagged, the majority (74%) of Atlantic sturgeon were detected in the estuaries of the four GOM rivers, primarily from May through October. Tagged fish spent most of their time in saline water in the Saco River and Merrimack River, moved into brackish water in the Penobscot River, and were found in saline, brackish, and fresh water in the Kennebec system. Approximately 70% of the tagged fish were detected in GOM coastal waters, and aggregated in the Bay of Fundy (May–January), offshore of the Penobscot River (September-February and May), offshore of the Kennebec River (September–February), in Saco Bay and the Scarborough River (July–November), and along the eastern Massachusetts coast between Cape Ann and Cape Cod (April–February). Nine tagged Atlantic sturgeon (7%) left the GOM, three of which moved as far north as Halifax in Canada and six moved as far south as the James River in Virginia. Information from this study will be used to make recommendations to avoid, reduce or mitigate the impacts of in-water projects and on Atlantic sturgeon.

Maine, Massachusetts, New Hampshire↗
USGS2017

Lessons from the past: isotopes of an endangered rail as indicators of underlying change to tidal marsh habitats

Introduction: Tidal marsh systems along the Pacific coast of the United States have experienced substantial stress and loss of area and ecosystem function, which we examined by using the endangered California Ridgway’s Rail, Rallus obsoletus obsoletus (‘rail’) as an indicator of its tidal marsh habitat in the San Francisco Estuary. We organized a collection of historical (1885-1940) and modern (2005-2014) rail feathers and analyzed the feather isotope means for delta carbon (δ 13 C), sulfur (δ 34 S), and nitrogen (δ 15 N) by region and time period. Outcomes: Feather isotopes represented the primary foraging habitat during historical then modern time periods. Neither individual nor regional rail feather isotopes suggested freshwater or terrestrial foraging by the rail. Three regions with both historic and modern feather isotopes revealed non-uniform spatial shifts in isotope levels consistent with a marine based food web and significant δ 15 N enrichment. Discussion: Our results supported the rail’s status as a generalist forager and obligate tidal marsh species throughout the historic record. The variable isoscape trends generated from feather isotope means illustrated a modern loss of the isotopic homogeneity between regions of historical tidal marsh, which correlated with spatially-explicit habitat alterations such as increasing biological invasions and sewage effluent over time. Conclusion: These findings have reinforced the importance of tidal marsh conservation in the face of ongoing underlying changes to these important ecosystems.

California↗
USGS2026

A new inventory and conservation assessment of United States islands

To support conservation-focused research and management we developed a new 30-m resolution polygon data layer of the nonlacustrine and nonriverine islands of the United States, with associated attributes describing key physical and conservation geography characteristics. Islands were grouped into a three-tiered hierarchy of island regions (twelve), island provinces (twenty-eight), and individual islands (19,023). Islands were classified as either continental or oceanic based on their physiographic position relative to the North America continental shelf, and estuarine versus nonestuarine depending on their location within or external to estuaries. For each island we assessed the diversity of terrestrial and coastal ecosystems, the number of threatened and endangered (T&E) species listed under the Endangered Species Act, the number of T&E species critical habitats, the number of migratory bird species listed under the Migratory Bird Treaty Act, the number of Key Biodiversity Areas, and the number of and management responsibility for protected areas. We conclude that the conservation importance of islands is disproportionate to their total area as, for example, islands contain 52 percent of the T&E species yet their total area is only 2 percent of the area of the continental mainland. Similarly, of the global total of 431 World Terrestrial Ecosystems, 201 (47 percent) occur on U.S. islands compared with 286 (66 percent) that occur on the U.S. continental mainland.

Annals of the American Association of Geographers↗
USGS1982

Sources, sinks and storage of river sediments in the Atlantic drainage of the United States

The history of sediment and its movement in the Atlantic drainage demonstrate some of the difficulties of modeling sediment on a river-basin scale. Soil erosion was accelerated by a factor of at least 10 when European settlers cleared forests and planted crops. Although increasing soil-conservation practice and decreasing crop farming have since reduced the rates of erosion, large quantities of eroded material are still stored on hillslopes and in stream valleys where they continue to augment the sediment loads of the rivers. The sediment from this episode of erosion that is largely past can be expected to emerge from storage for many decades and perhaps even several centuries to come. The reservoirs that have been built on many of the major rivers trap significant portions of the moving sediment which, in some places, may be remobilized by large floods. Essentially all the river sediment that reaches the Atlantic coastal zone is trapped in estuaries and coastal marshlands. Probably less than 5% is deposited on the floor of the continental shelf or the deep sea.

Journal of Geology↗
USGS2020

Low threshold for nitrogen concentration saturation in headwaters increases regional and coastal delivery

River corridors store, convey, and process nutrients from terrestrial and upstream sources, regulating delivery from headwaters to estuaries. A consequence of chronic excess nitrogen loading, as supported by theory and field studies in specific areas, is saturation of the biogeochemically-mediated nitrogen removal processes that weakens the capacity of the river corridor to remove nitrogen. Regional nitrogen models typically assume that removal capacity exhibits first-order behavior, scaling positively and linearly with increasing concentration, which may bias the estimation of where and at what rate nitrogen is removed by river corridors. Here we estimate the nitrogen concentration saturation threshold and its effects on nitrogen export from the Northeastern United States, revealing an average 42% concentration-induced reduction in headwater removal capacity. The weakened capacity caused an average 10% increase in the predicted delivery of riverine nitrogen from urban and agricultural watersheds compared to estimates using first-order process assumptions. Our results suggest that nitrogen removal may fall below a first-order process at a low riverine threshold concentration of 0.5 mg N L-1. Threshold behavior indicates that even modest mitigation of nitrogen concentration in river corridors above the threshold can cause a self-reinforcing boost to nitrogen removal.

Connecticut, District of Columbia, Delaware, Massa↗
USGS2020

Non-freezing cold event stresses can cause significant damage to mangrove seedlings: Assessing the role of warming and nitrogen enrichment in a mesocosm study

Mangroves are expanding poleward along coastlines globally as a response to rising temperatures and reduced incidence of freezing under climate change. Yet, knowledge of mangrove responses to infrequent cold events in the context of future global and regional environmental changes is limited. We initiated a mesocosm experiment in which the seedlings of two mangrove species were grown either at ambient temperature or under warming with and without nitrogen (N) loading. During a short winter period, an unusually severe cold event occurred with the lowest temperature of 2°C. We assessed the possible response of these two mangrove species to the cold stress. We found that the cold event caused various degrees of damage to the seedlings of both mangrove species, with the warming treatment seemingly protecting leaves and branches from the cold damage. However, warming did not buffer mangroves to mortality from those low temperatures in either species. The cold event resulted in a significant decrease in seedling growth rates and net ecosystem CO2 uptake in the post-cold period relative to the pre-cold period, though the cold event did not alter the effects of warming on these parameters of both mangrove species. The cold event differentially altered physiological responses of the two species growing under N loading, with A. marina growing in higher N concentrations having a reduced growth response after the cold event, whereas B. gymnorrhiza displayed no change in post-cold period versus pre-cold period growth. Our findings suggest the pivotal role of cold events, versus freeze events, in regulating mangrove survival and growth even under future warming scenarios. Two mangrove species exhibited differential survival and growth responses to the cold event at different N concentrations, which has implications for how we can restore and conserve mangroves among the world's eutrophied sub-tropical estuaries and with future warming.

Environmental Research↗
USGS2020

Inter-population differences in salinity tolerance of adult wild Sacramento splittail: osmoregulatory and metabolic responses to salinity

The Sacramento splittail ( Pogonichthys macrolepidotus ) is composed of two genetically distinct populations endemic to the San Francisco Estuary (SFE). The allopatric upstream spawning habitat of the Central Valley (CV) population connects with the sympatric rearing grounds via relatively low salinity waters, whereas the San Pablo (SP) population must pass through the relatively high-salinity Upper SFE to reach its allopatric downstream spawning habitat. We hypothesize that if migration through SFE salinities to SP spawning grounds is more challenging for adult CV than SP splittail, then salinity tolerance, osmoregulatory capacity, and metabolic responses to salinity will differ between populations. Osmoregulatory disturbances, assessed by measuring plasma osmolality and ions, muscle moisture and Na + -K + -ATPase activity after 168 to 336 h at 11‰ salinity, showed evidence for a more robust osmoregulatory capacity in adult SP relative to CV splittail. While both resting and maximum metabolic rates were elevated in SP splittail in response to increased salinity, CV splittail metabolic rates were unaffected by salinity. Further, the calculated difference between resting and maximum metabolic values, aerobic scope, did not differ significantly between populations. Therefore, improved osmoregulation came at a metabolic cost for SP splittail but was not associated with negative impacts on scope for aerobic metabolism. These results suggest that SP splittail may be physiologically adjusted to allow for migration through higher-salinity waters. The trends in interpopulation variation in osmoregulatory and metabolic responses to salinity exposures support our hypothesis of greater salinity-related challenges to adult CV than SP splittail migration and are consistent with our previous findings for juvenile splittail populations, further supporting our recommendation of population-specific management.

California↗
USGS2021

Divergence in salinity tolerance of northern Gulf of Mexico eastern oysters under field and laboratory exposure

The eastern oyster, Crassostrea virginica , is a foundation species within US Gulf of Mexico (GoM) estuaries that has experienced substantial population declines. As changes from management and climate are expected to continue to impact estuarine salinity, understanding how local oyster populations might respond and identifying populations with adaptations to more extreme changes in salinity could inform resource management, including restoration and aquaculture programs. Wild oysters were collected from four estuarine sites from Texas [Packery Channel (PC): 35.5, annual mean salinity, Aransas Bay (AB): 23.0] and Louisiana [Calcasieu Lake (CL): 16.2, Vermilion Bay (VB): 7.4] and spawned. The progeny were compared in field and laboratory studies under different salinity regimes. For the field study, F1 oysters were deployed at low (6.4) and intermediate (16.5) salinity sites in Alabama. Growth and mortality were measured monthly. Condition index and Perkinsus marinus infection intensity were measured quarterly. For the laboratory studies, mortality was recorded in F1 oysters that were exposed to salinities of 2.0, 4.0, 20.0/22.0, 38.0 and 44.0 with and without acclimation. The results of the field study and laboratory study with acclimation indicated that PC oysters are adapted to high-salinity conditions and do not tolerate very low salinities. The AB stock had the highest plasticity as it performed as well as the PC stock at high salinities and as well as Louisiana stocks at the lowest salinity. Louisiana stocks did not perform as well as the Texas stocks at high salinities. Results from the laboratory studies without salinity acclimation showed that all F1 stocks experiencing rapid mortality at low salinities when 3-month oysters collected at a salinity of 24 were used and at both low and high salinities when 7-month oysters collected at a salinity of 14.5 were used.

Alabama, Louisiana, Texas↗
USGS2016

Inter-population differences in salinity tolerance and osmoregulation of juvenile wild and hatchery-born Sacramento splittail

The Sacramento splittail ( Pogonichthys macrolepidotus ) is a minnow endemic to the highly modified San Francisco Estuary of California, USA and its associated rivers and tributaries. This species is composed of two genetically distinct populations, which, according to field observations and otolith strontium signatures, show largely allopatric distribution patterns as recently hatched juveniles. Juvenile Central Valley splittail are found primarily in the nearly fresh waters of the Sacramento and San Joaquin rivers and their tributaries, whereas San Pablo juveniles are found in the typically higher-salinity waters (i.e. up to 10‰) of the Napa and Petaluma Rivers. As the large salinity differences between young-of-year habitats may indicate population-specific differences in salinity tolerance, we hypothesized that juvenile San Pablo and Central Valley splittail populations differ in their response to salinity. In hatchery-born and wild-caught juvenile San Pablo splittail, we found upper salinity tolerances, where mortalities occurred within 336 h of exposure to 16‰ or higher, which was higher than the upper salinity tolerance of 14‰ for wild-caught juvenile Central Valley splittail. This, in conjunction with slower recovery of plasma osmolality, but not ion levels, muscle moisture or gill Na + ,K + -ATPase activity, in Central Valley relative to San Pablo splittail during osmoregulatory disturbance provides some support for our hypothesis of inter-population variation in salinity tolerance and osmoregulation. The modestly improved salinity tolerance of San Pablo splittail is consistent with its use of higher-salinity habitats. Although confirmation of the putative adaptive difference through further studies is recommended, this may highlight the need for population-specific management considerations.

California↗
USGS2013

Intragenomic sequence variation at the ITS1 - ITS2 region and at the 18S and 28S nuclear ribosomal DNA genes of the New Zealand mud snail, Potamopyrgus antipodarum (Hydrobiidae: mollusca)

Molecular genetic analysis was conducted on two populations of the invasive non-native New Zealand mud snail ( Potamopyrgus antipodarum ), one from a freshwater ecosystem in Devil's Lake (Oregon, USA) and the other from an ecosystem of higher salinity in the Columbia River estuary (Hammond Harbor, Oregon, USA). To elucidate potential genetic differences between the two populations, three segments of nuclear ribosomal DNA (rDNA), the ITS1-ITS2 regions and the 18S and 28S rDNA genes were cloned and sequenced. Variant sequences within each individual were found in all three rDNA segments. Folding models were utilized for secondary structure analysis and results indicated that there were many sequences which contained structure-altering polymorphisms, which suggests they could be nonfunctional pseudogenes. In addition, analysis of molecular variance (AMOVA) was used for hierarchical analysis of genetic variance to estimate variation within and among populations and within individuals. AMOVA revealed significant variation in the ITS region between the populations and among clones within individuals, while in the 5.8S rDNA significant variation was revealed among individuals within the two populations. High levels of intragenomic variation were found in the ITS regions, which are known to be highly variable in many organisms. More interestingly, intragenomic variation was also found in the 18S and 28S rDNA, which has rarely been observed in animals and is so far unreported in Mollusca. We postulate that in these P. antipodarum populations the effects of concerted evolution are diminished due to the fact that not all of the rDNA genes in their polyploid genome should be essential for sustaining cellular function. This could lead to a lessening of selection pressures, allowing mutations to accumulate in some copies, changing them into variant sequences.

Journal of Molluscan Studies↗
USGS2023

Alaska's climate sensitive Yukon-Kuskokwim Delta supports seven million Arctic-breeding shorebirds, including the majority of six North American populations

Baseline information about declining North American shorebird populations is essential to determine the effects of global warming at low-lying coastal areas of the Arctic and subarctic, where numerous taxa breed, and to assess population recovery throughout their range. We estimated population sizes on the Yukon-Kuskokwim Delta in western Alaska on the eastern edge of the Bering Sea. We conducted ground-based surveys during 2015 and 2016 at 589 randomly selected plots from an area of 35,769 km 2 . We used stratified random sampling in 8 physiographic strata and corrected population estimates using detection ratios derived from double sampling on a subset of plots. We detected 11,110 breeding individuals of 21 taxa. Western Sandpiper ( Calidris mauri ), Red-necked Phalarope ( Phalaropus lobatus ), Dunlin (subspecies C. alpina pacifica ), and Wilson’s Snipe ( Gallinago delicata ) were the most abundant taxa. We estimated that ~6.9 million individual shorebirds were breeding on the entire Yukon-Kuskokwim Delta in 2015 and 2016. Our surveys of this region provided robust population estimates (CVs ≤ 0.35) for 14 species. Our results indicate that the Yukon-Kuskokwim Delta supports a large proportion of North America’s breeding populations of the Pacific Golden-Plover ( Pluvialis fulva ), the western population of a Whimbrel subspecies ( Numenius phaeopus hudsonicus ), a Bar-tailed Godwit subspecies ( Limosa lapponica baueri ), Black Turnstone ( Arenaria melanocephala ), a Dunlin subspecies ( Calidris alpina pacifica ), and Western Sandpiper. Our study highlights the importance to breeding shorebirds of this relatively pristine but climatically sensitive deltaic system. Estuaries and deltaic systems worldwide are rapidly being degraded by anthropogenic activities. Our population estimates can be used to refine prior North American population estimates, determine effects of global warming, and evaluate conservation success by measuring population change over time.

Alaska↗
USGS1994

Notes on a Mesodinium rubrum red tide in San Francisco Bay (California, USA)

Discrete red patches of water were observed in South San Francisco Bay (USA) on 30 April 1993, and examination of live samples showed that this red tide was caused by surface accumulations of the pigmented ciliate Mesodinium rubrum . Vertical profiles showed strong salinity and temperature stratification in the upper 5 m, peak chlorophyll fluorescence in the upper meter, and differences in the small-scale density structure and fluorescence distribution among red patches. Events preceding this Mesodinium red tide included: (i) heavy precipitation and run-off, allowing for strong salinity stratification; (ii) a spring diatom bloom where the chlorophyll a concentration reached 50 mg m −3 ; (ii) depletions of dissolved inorganic N and Si in the photic zone; and (iv) several days of rapid warming and stabilization of the upper surface layer. These conditions may be general prerequisites for M.rubrum blooms in temperate estuaries.

California↗
USGS1985

Differences in in vivo fluorescence yield between three phytoplankton size classes

The size-dependent relationship between in vivo fluorescence (IVF) and chlorophyll a was determined for monthly phytoplankton samples from the San Francisco Bay estuary. Chlorophyll a and IVF were both measured on netplankton (>22 &mu;m), nanoplankton (5&ndash;22 &mu;m), and ultraplankton (<5 &mu;m) samples that were separated with screens. IVF and chlorophyll a were linearly related for each size class, but the IVF per unit chlorophyll a (R) was significantly different between these three size classes. The ultraplankton R was twice that of the nanoplankton which was in turn twice the netplankton R. Hence, accurate size fractionation of phytoplankton biomass from measures of IVF requires correction for size-dependent variations in R.

Journal of Plankton Research↗
USGS2000

Methods for accurate estimation of net discharge in a tidal channel

Accurate estimates of net residual discharge in tidally affected rivers and estuaries are possible because of recently developed ultrasonic discharge measurement techniques. Previous discharge estimates using conventional mechanical current meters and methods based on stage/discharge relations or water slope measurements often yielded errors that were as great as or greater than the computed residual discharge. Ultrasonic measurement methods consist of: 1) the use of ultrasonic instruments for the measurement of a representative 'index' velocity used for in situ estimation of mean water velocity and 2) the use of the acoustic Doppler current discharge measurement system to calibrate the index velocity measurement data. Methods used to calibrate (rate) the index velocity to the channel velocity measured using the Acoustic Doppler Current Profiler are the most critical factors affecting the accuracy of net discharge estimation. The index velocity first must be related to mean channel velocity and then used to calculate instantaneous channel discharge. Finally, discharge is low-pass filtered to remove the effects of the tides. An ultrasonic velocity meter discharge-measurement site in a tidally affected region of the Sacramento-San Joaquin Rivers was used to study the accuracy of the index velocity calibration procedure. Calibration data consisting of ultrasonic velocity meter index velocity and concurrent acoustic Doppler discharge measurement data were collected during three time periods. Two sets of data were collected during a spring tide (monthly maximum tidal current) and one of data collected during a neap tide (monthly minimum tidal current). The relative magnitude of instrumental errors, acoustic Doppler discharge measurement errors, and calibration errors were evaluated. Calibration error was found to be the most significant source of error in estimating net discharge. Using a comprehensive calibration method, net discharge estimates developed from the three sets of calibration data differed by less than an average of 4 cubic meters per second, or less than 0.5% of a typical peak tidal discharge rate of 750 cubic meters per second.

IEEE Journal of Oceanic Engineering↗
USGS2011

Characterizing land surface change and levee stability in the Sacramento-San Joaquin Delta using UAVSAR radar imagery

The islands of the Sacramento-San Joaquin Delta have been subject to subsidence since they were first reclaimed from the estuary marshlands starting over 100 years ago, with most of the land currently lying below mean sea level. This area, which is the primary water resource of the state of California, is under constant threat of inundation from levee failure. Since July 2009, we have been imaging the area using the quad-polarimetric UAVSAR L-band radar, with eighteen data sets collected as of April 2011. Here we report results of our polarimetric and differential interferometric analysis of the data for levee deformation and land surface change.

California↗
USGS2016

Detection and quantification of hydrocarbons in sediments

A new technology developed by the US Geological Survey now allows for fast, direct detection of hydrocarbon plumes both in rivers and drifting in the deep ocean. Recent experiments show that the method can also detect and quantify hydrocarbons buried in river sediments and estuaries. This approach uses a variant of induced polarization, a surface-sensitive physical property of certain polarizable materials immersed in an electrolyte that can accept and adsorb charge under an inducing voltage. Known polarizable materials include most sulfides, ilmenite (FeTiO 3 ), metallic objects such as buried wrecks and pipelines, and now hydrocarbons. The hydrocarbon-in-water response to induced polarization is in fact nearly two orders of magnitude greater than the IP response of any of the hard minerals. The oil:water detection limit for hydrocarbons so far is down to 0.0002% in the laboratory.

Conference Paper↗
USGS1987

Modeling of estuarne chlorophyll a from an airborne scanner

Near simultaneous collection of 34 surface water samples and airborne multispectral scanner data provided input for regression models developed to predict surface concentrations of estuarine chlorophyll a. Two wavelength ratios were employed in model development. The ratios werechosen to capitalize on the spectral characteristics of chlorophyll a, while minimizing atmospheric influences. Models were then applied to data previously acquired over the study area thre years earlier. Results are in the form of color-coded displays of predicted chlorophyll a concentrations and comparisons of the agreement among measured surface samples and predictions basedon coincident remotely sensed data. The influence of large variations in fresh-water inflow to the estuary are clearly apparent in the results. The synoptic view provided by remote sensing is another method of examining important estuarine dynamics difficult to observe from in situ sampling alone.

California↗