SEARCH · USGS Science

Results for “Animals”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,459 records · Page 81Linked to original sources

USGS1990

Statistical inference for capture-recapture experiments

This monograph presents a detailed, practical exposition on the design, analysis, and interpretation of capture-recapture studies. The Lincoln-Petersen model (Chapter 2) and the closed population models (Chapter 3) are presented only briefly because these models have been covered in detail elsewhere. The Jolly- Seber open population model, which is central to the monograph, is covered in detail in Chapter 4. In Chapter 5 we consider the "enumeration" or "calendar of captures" approach, which is widely used by mammalogists and other vertebrate ecologists. We strongly recommend that it be abandoned in favor of analyses based on the Jolly-Seber model. We consider 2 restricted versions of the Jolly-Seber model. We believe the first of these, which allows losses (mortality or emigration) but not additions (births or immigration), is likely to be useful in practice. Another series of restrictive models requires the assumptions of a constant survival rate or a constant survival rate and a constant capture rate for the duration of the study. Detailed examples are given that illustrate the usefulness of these restrictions. There often can be a substantial gain in precision over Jolly-Seber estimates. In Chapter 5 we also consider 2 generalizations of the Jolly-Seber model. The temporary trap response model allows newly marked animals to have different survival and capture rates for 1 period. The other generalization is the cohort Jolly-Seber model. Ideally all animals would be marked as young, and age effects considered by using the Jolly-Seber model on each cohort separately. In Chapter 6 we present a detailed description of an age-dependent Jolly-Seber model, which can be used when 2 or more identifiable age classes are marked. In Chapter 7 we present a detailed description of the "robust" design. Under this design each primary period contains several secondary sampling periods. We propose an estimation procedure based on closed and open population models that allows for heterogeneity and trap response of capture rates (hence the name robust design). We begin by considering just 1 age class and then extend to 2 age classes. When there are 2 age classes it is possible to distinguish immigrants and births. In Chapter 8 we give a detailed discussion of the design of capture-recapture studies. First, capture-recapture is compared to other possible sampling procedures. Next, the design of capture-recapture studies to minimize assumption violations is considered. Finally, we consider the precision of parameter estimates and present figures on proportional standard errors for a variety of initial parameter values to aid the biologist about to plan a study. A new program, JOLLY, has been written to accompany the material on the Jolly-Seber model (Chapter 4) and its extensions (Chapter 5). Another new program, JOLLYAGE, has been written for a special case of the age-dependent model (Chapter 6) where there are only 2 age classes. In Chapter 9 a brief description of the different versions of the 2 programs is given. Chapter 10 gives a brief description of some alternative approaches that were not considered in this monograph. We believe that an excellent overall view of capture- recapture models may be obtained by reading the monograph by White et al. (1982) emphasizing closed models and then reading this monograph where we concentrate on open models. The important recent monograph by Burnham et al. (1987) could then be read if there were interest in the comparison of different populations.

Book↗

USGS2000

Field guide to malformations of frogs and toads: with radiographic interpretations

In 1995, students found numerous malformed frogs on a field trip to a Minnesota pond. Since that time, reports of malformed frogs have increased dramatically. Malformed frogs have now been reported in 44 states in 38 species of frogs, and 19 species of toads. Estimates as high as 60% of the newly metamorphosed frog populations have had malformations at some ponds (NARCAM, ’99). The wide geographic distribution of malformed frogs and the variety of malformations are a concern to resource managers, research scientists and public health officials. The potential for malformations to serve as a signal of ecosystem disruption, and the affect this potential disruption might have on other organisms that share those ecosystems, has not been resolved. Malformations represent an error that occurred early in development. The event that caused the developmental error is temporally distant from the malformation we see in the fully developed animal. Knowledge of normal developmental principles is necessary to design thoughtful investigations that will define the events involved in abnormal development in wild frog populations. Development begins at the time an egg is fertilized and progresses by chemical communication between cells and cell layers. This communication is programmed through gene expression. Malformations represent primary errors in development, errors in chemical communication or translation of genetic information. Deformations arise later in development and usually result from the influence of mechanical factors (such as amputation) that alter shape or anatomy of a structure that has developed normally. The occurrence and the type of malformations are influenced by the type of error or insult as well as the timing of the error (the developmental stage at which the error occurred). The appearance of the malformation can therefore provide clues that suggest when the error may have occurred. If the malformation is an incomplete organ, such as an incomplete limb, the factor or insult acted during a susceptible period prior to organ completion. Although defining the anatomy of the malformed metamorphosed frog can give us an idea of the approximate window during which the developmental insult was initiated, and might even suggest the type of insult that may have occurred, the morphology of the malformation does not define the cause. To define causes and mechanisms of frog malformations we need to use well designed investigations that are different from traditional tests used in acute toxicity or disease pathogenicity studies. When investigating malformations in metamorphosed frogs, we are looking at the affect of exposure to an agent that occurred early in tadpole development. Therefore investigations to determine causes of malformations need to look at agents that are present in the tadpoles or their environments at these early developmental times. Laboratory experiments need to expose embryos and tadpoles to suspect agents at appropriate developmental stages and look at acute results, such as toxicity and death, as well as following the developmental process to completion to determine the impact of the agent on the developing tadpole and the fully developed frog. This means holding animals past metamorphic climax to assure that the anatomy and physiology of the adult have developed normally. As we look at field collections of abnormal frogs, we need to keep in mind that these collections reflect survivors only. We are looking at malformations that were not fatal to tadpoles. We cannot assume that because we do not collect other malformations, they did not exist. More work needs to be done on the developing tadpole, in the field and in the laboratory, to better elucidate the range, frequency, character and causes of anuran malformations.

Biological Science Report↗

USGS2009

Population density estimated from locations of individuals on a passive detector array

The density of a closed population of animals occupying stable home ranges may be estimated from detections of individuals on an array of detectors, using newly developed methods for spatially explicit capture–recapture. Likelihood-based methods provide estimates for data from multi-catch traps or from devices that record presence without restricting animal movement ("proximity" detectors such as camera traps and hair snags). As originally proposed, these methods require multiple sampling intervals. We show that equally precise and unbiased estimates may be obtained from a single sampling interval, using only the spatial pattern of detections. This considerably extends the range of possible applications, and we illustrate the potential by estimating density from simulated detections of bird vocalizations on a microphone array. Acoustic detection can be defined as occurring when received signal strength exceeds a threshold. We suggest detection models for binary acoustic data, and for continuous data comprising measurements of all signals above the threshold. While binary data are often sufficient for density estimation, modeling signal strength improves precision when the microphone array is small.

Ecology↗

USGS2011

Ecological influence and pathways of land use in sagebrush

Land use in sagebrush (Artemisia spp.) landscapes influences all sage-grouse (Centrocer-cus spp.) populations in western North America. Croplands and the network of irrigation canals cover 230,000 km2 and indirectly influence up to 77% of the Sage-Grouse Conservation Area and 73% of sagebrush land cover by subsidizing synanthropic predators on sage-grouse. Urbanization and the demands of human population growth have created an extensive network of con-necting infrastructure that is expanding its influence on sagebrush landscapes. Over 2,500 km 2 are now covered by interstate highways and paved roads; when secondary roads are included, 15% of the Sage-Grouse Conservation Area and 5% of existing sagebrush habitats are 2.5 km from roads. Density of secondary roads often exceeds 5 km/km 2 , resulting in widespread motorized access for recreation, creating extensive travel corridors for management actions and resource development, subsidizing predators adapted to human presence, and facilitating spread of exotic or invasive plants. Sagebrush lands also are being used for their wilderness and recreation values, including off highway vehicle use. Approximately 12,000,000 animal use months (AUM amount of forage to support one livestock unit per month) are permitted for grazing livestock on public lands in the western states. Direct effects of grazing on sage-grouse populations or sagebrush landscapes are not possible to assess from current data. However, management of lands grazed by livestock has influenced sagebrush ecosystems by vegetation treatments to increase forage and reduce sagebrush and other plant species unpalatable to livestock. Fences (2 km/km 2 in some regions), roads, and water developments to manage livestock movements further modify the landscape. Oil and gas development influences 8% of the sagebrush habitats with the highest intensities occurring in the eastern range of sage-grouse; 20% of the sagebrush distribution is indirectly influenced in the Great Plains, Wyoming Basin, and Colorado Plateau SMZs. Energy development physically removes habitat to construct well pads, roads, power lines, and pipelines; indirect effects include habitat fragmentation, soil disturbance, and facilitation of exotic plant and animal spread. More recent development of alternative energy, such as wind and geothermal, creates infrastructure in new regions of the sage-grouse distribution. Land use will continue to be a dominant stressor on sage-brush systems; its individual and cumulative effects will challenge long-term conservation of sage-grouse populations.

Book chapter↗

USGS2001

The role of native birds and other wildlife on the emergence of zoonotic diseases

Wildlife can be an important source of transmission of infectious disease to humans. One potential transmission route involves hunting and fishing, both common activities in the United States and worldwide. For example, during 1996, approximately 11 million Americans, about 40 percent of the total population 16 years of age and older, took part in some recreational activity relating to wildlife and fish. Another potential route of infection focuses on urban and suburban environments. These locations are of special concern because of their increasing role as wildlife habitat, the greater interface between humans and wildlife that takes place within those environments, the paucity of knowledge about disease in those wildlife populations, and the general lack of orderly management for wildlife within those environments. In the wild, several trends are contributing to the growing importance of zoonotic diseases. First, the spectrum of infectious diseases affecting wildlife today is greater than at any time during the previous century. Second, the occurrence of infectious diseases has changed, from sporadic, self-limiting outbreaks that generally resulted in minor losses to frequently occurring events that generally result in major losses of wildlife. Third, disease emergence has occurred on a worldwide scale in a broad spectrum of wildlife species and habitats. Given the scope of the problem, current disease surveillance efforts are inadequate. Few state wildlife agencies allocate personnel and resources to address wildlife disease, despite their statutory responsibility for managing nonmigratory wildlife. Some state agencies provide minimal support for regional programs based at universities. At the federal level, the primary surveillance effort is conducted by the National Wildlife Health Center, operated by the U.S. Geological Survey. Outside of government, some veterinary schools, agriculture diagnostic laboratories, and other programs provide additional information on animal diseases, primarily by examining carcasses of dead wildlife submitted for analysis, and individual university-based researchers carry out a variety of studies. Typically, information about the occurrence of disease in free-ranging wildlife is derived from surveys and mortality events in areas where wildlife observations by agencies and the public are frequent enough to detect their occurrence before carcasses are removed by scavengers and predatory animals. The result is that disease occurrence is grossly underreported, heavily biased toward mortality events, and biased toward species of special concern and interest, such as game and endangered species. Therefore, the available information should be viewed as the “proverbial tip of the iceberg” relative to disease activity within wildlife populations.

National Academy of Science.↗

USGS2012

WLCI researchers employ new approaches to help managers conserve deer migrations

Elk, mule deer, pronghorn antelope, moose, and bighorn sheep are iconic animals of the American West. These hooved animals, known as ungulates, commonly travel 30–60 miles between seasonal ranges. These migrations between winter and summer ranges are vital for survival and reproduction. As habitat fragmentation continues, the conservation of ungulate migration routes has received considerable attention in the West and across the globe. For example, it is estimated that many ungulate migration routes in the Greater Yellowstone Ecosystem have already been lost. The traditional migration routes of Wyoming ungulates are threatened by unprecedented levels of energy development and by increasing levels of rural ranchette development (including fences, structures, and roads). In the past, migration corridors have been mapped based primarily on the expert opinions of state game managers, but long-term conservation of Wyoming's ungulate migration routes requires a better understanding of migration ecology and more sophisticated management tools. Wyoming Landscape Conservation Initiative (WLCI) researchers investigated the migration of a large mule deer herd across the Dad and Wild Horse winter ranges in southwest Wyoming, where 2,000 gas wells and 1,609 kilometers of pipelines and roads have been proposed for development.

Wyoming↗

USGS2012

Radio telemetry equipment and applications for carnivores

Radio-telemetry was not included in the first comprehensive manual of wildlife research techniques (Mosby 1960) because the first published papers were about physiological wildlife telemetry (LeMunyan et al. 1959) and because research using telemetry in field ecology was just being initiated (Marshall et al. 1962; Cochran and Lord 1963). Among the first uses of telemetry to study wildlife, however, was a study of carnivores (Craighead et al. 1963), and telemetry has become a common method for studying numerous topics of carnivore biology. Our goals for this chapter are to provide basic information about radio-telemetry equipment and procedures. Although we provide many references to studies using telemetry equipment and methods, we recommend Kenward's (2001) comprehensive book, A manual of wildlife radio tagging for persons who are unfamiliar with radio-telemetry, Fuller et al. (2005), and Tomkiewicz et al. (2010). Compendia of uses of radio-telemetry in animal research appear regularly as chapters in manuals (Cochran 1980; Samuel and Fuller 1994), in books about equipment, field procedures, study design, and applications (Amlaner and Macdonald 1980; Anderka 1987; Amlaner 1989; White and Garrott 1990; Priede and Swift 1992; Kenward 2001; Millspaugh and Marzluff 2001; Mech and Barber 2002), and in reviews highlighting new developments (Cooke et al. 2004; Rutz and Hays 2009; Cagnacci et al. 2010). Some animal telemetry products and techniques have remained almost unchanged for years, but new technologies and approaches emerge and replace previously available equipment at an increasing pace. Here, we emphasize recent studies for which telemetry was used with carnivores.

Book chapter↗

USGS1998

Conspecific reproductive success and breeding habitat selection: Implications for the study of coloniality

Habitat selection is a crucial process in the life cycle of animals because it can affect most components of fitness. It has been proposed that some animals cue on the reproductive success of conspecifics to select breeding habitats. We tested this hypothesis with demographic and behavioral data from a 17-yr study of the Black-legged Kittiwake ( Rissa tridactyla ), a cliff-nesting seabird. As the hypothesis assumes, the Black-legged Kittiwake nesting environment was patchy, and the relative quality of the different patches (i.e., breeding cliffs) varied in time. The average reproductive success of the breeders of a given cliff was predictable from one year to the next, but this predictability faded after several years. The dynamic nature of cliff quality in the long term is partly explained by the autocorrelation of the prevalence of an ectoparasite that influences reproductive success. As predicted by the performance-based conspecific attraction hypothesis, the reproductive success of current breeders on a given cliff was predictive of the reproductive success of new recruits on the cliff in the following year. Breeders tended to recruit to the previous year’s most productive cliffs and to emigrate from the least productive ones. Consequently, the dynamics of breeder numbers on the cliffs were explained by local reproductive success on a year-to-year basis. Because, on average, young Black-legged Kittiwakes first breed when 4 yr old, such a relationship probably results from individual choices based on the assessment of previous-year local quality. When breeders changed breeding cliffs between years, they selected cliffs of per capita higher reproductive success. Furthermore, after accounting for the potential effects of age and sex as well as between-year variations, the effect of individual breeding performance on breeding dispersal was strongly influenced by the average reproductive success of other breeders on the same cliff. Individual breeding performance did not appear to influence the probability of dispersing for birds breeding on cliffs with high local reproductive success, whereas individual breeding performance did have a strong effect on dispersal for birds that bred on cliffs with lower local reproductive success. This suggests that the reproductive success of locally breeding conspecifics may be sufficient to override an individual’s own breeding experience when deciding whether to emigrate. These results, which are supported by behavioral observations of the role of prospecting in recruitment, suggest that both first breeders and adults rely on the reproductive success of conspecifics as “public information” to assess their own chances of breeding successfully in a given patch and to make settling decisions. A corollary prediction is that individuals should attempt to breed near successful conspecifics (a form of social attraction) in order to benefit from the same favorable local environmental conditions. Such a performance-based conspecific attraction mechanism can thus lead to an aggregative distribution of nests and may have played a role in the evolution of coloniality.

Ecology↗

USGS1999

Nutrient concentrations and fluxes in tributaries to the Swan-Canning estuary, Western Australia

In Western Australia, catchment nutrient availability on an areal basis is primarily controlled by the disposal of animal waste and the type and rate of fertilizer application, particularly in coastal areas. The coastal areas receive notably higher rainfall and have more intense horticulture and animal production than inland areas, and are undergoing rapid urbanization, particularly adjacent to the estuary. Also, the surficial aquifers on the coastal plain are generally sandy having a low nutrient retention capacity and rapidly transmit soluble and colloidal material through the subsurface. In the Swan-Canning basin, high air and soil temperatures and seasonally arid conditions cause rapid mineralization of nitrogen and phosphorus. The nutrients are subsequently available for transport during the onset of seasonal wet weather, which typically begins during the period from late April to June. In addition to the rapid mobility of nutrients in streamwater from agricultural areas during the wet season, drains in urban areas, which typically have high nutrient concentrations, also are an important source of nutrients as the drains flow directly to the estuary throughout the year.

IAHS-AISH Publication↗

USGS1999

An evaluation of parturition indices in fishers

Fishers (Martes pennanti) are important forest carnivores and furbearers that are susceptible to overharvest. Traditional indices used to monitor fisher populations typically overestimate litter size and proportion of females that give birth. We evaluated the usefulness of 2 indices of reproduction to determine proportion of female fishers that gave birth in a particular year. We used female fishers of known age and reproductive histories to compare appearance of placental scars with incidence of pregnancy and litter size. Microscopic observation of freshly removed reproductive tracts correctly identified pregnant fishers and correctly estimated litter size in 3 of 4 instances, but gross observation of placental scars failed to correctly identify pregnant fishers and litter size. Microscopic observations of reproductive tracts in carcasses that were not fresh also failed to identify pregnant animals and litter size. We evaluated mean sizes of anterior nipples to see if different reproductive classes could be distinguished. Mean anterior nipple size of captive and wild fishers correctly identified current-year breeders from nonbreeders. Former breeders were misclassified in 4 of 13 instances. Presence of placental scars accurately predicted parturition in a small sample size of fishers, but absence of placental scars did not signify that a female did not give birth. In addition to enabling the estimation of parturition rates in live animals more accurately than traditional indices, mean anterior nipple size also provided an estimate of the percentage of adult females that successfully raised young. Though using mean anterior nipple size to index reproductive success looks promising, additional data are needed to evaluate effects of using dried, stretched pelts on nipple size for management purposes.

Wildlife Society Bulletin↗

USGS2002

Evaluation of Brucella abortus strain RB51 and strain 19 in pronghorn antelope

Free-roaming elk and bison in the Greater Yellowstone Area remain the only wildlife reservoirs for Brucella abortus in the United States, and the large number of animals and a lack of holding facilities make it unreasonable to individually vaccinate each animal. Therefore, oral delivery is being proposed as a possible option to vaccinate these wild ungulates. One of the main problems associated with oral vaccination is the potential exposure of nontarget species to the vaccines. The purpose of this study was to determine the effects of two Brucella vaccines, strain 19 (S19) and the rough strain RB51 (SRB51), in pregnant pronghorn antelope. We conclude that S19 and SRB51 rarely colonize maternal and fetal tissues of pregnant pronghorn and were not associated with fetal death. Oral delivery of either vaccine at this dose appears to be nonhazardous to pregnant pronghorn.

Conference Paper↗

USGS2003

Seasonal movements, migratory behavior, and site fidelity of West Indian manatees along the Atlantic coast of the United States

The West Indian manatee ( Trichechus manatus ) is endangered by human activities throughout its range, including the U.S. Atlantic coast where habitat degradation from coastal development and manatee deaths from watercraft collisions have been particularly severe. We radio-tagged and tracked 78 manatees along the east coast of Florida and Georgia over a 12-year period (1986-1998). Our goals were to characterize the seasonal movements, migratory behavior, and site fidelity of manatees in this region in order to provide information for the development of effective conservation strategies. Most study animals were tracked remotely with the Argos satellite system, which yielded a mean (SD) of 3.7 (1.6) locations per day; all were regularly tracked in the field using conventional radiotelemetry methods. The combined data collection effort yielded >93,000 locations over nearly 32,000 tag-days. The median duration of tracking was 8.3 months per individual, but numerous manatees were tracked over multiple years (max = 6.8 years). Most manatees migrated seasonally over large distances between a northerly warm-season range and a southerly winter range (median one-way distance = 280 km, max = 830 km), but 12% of individuals were resident in a relatively small area (<50 km) year-round. The movements of one adult male spanned >2,300 km of coastline between southeastern Florida and Rhode Island. No study animals journeyed to the Gulf coast of Florida. Regions heavily utilized by tagged manatees included: Fernandina Beach, FL to Brunswick, GA in the warm season; northern Biscayne Bay to Port Everglades, FL in the winter; and central coastal Florida, especially the Banana River and northern Indian River lagoons, in all seasons. Daily travel rate, defined as the distance between successive mean daily locations, averaged 2.5 km (SD = 1.7), but this varied with season, migratory pattern, and sex. Adult males traveled a significantly greater distance per day than did adult females for most of the warm season, which corresponded closely with the principal period of breeding activity, but there was no difference between the sexes in daily travel rate during the winter. The timing of seasonal migrations differed markedly between geographic regions. Most long-distance movements in the southern half of the study area occurred between November and March in response to changing temperatures, whereas most migrations in the northern region took place during the warmer, non-winter months. Manatees left their warm-season range in central Florida in response to cold fronts that dropped water temperatures by an average of 2.0??C over the 24-hr period preceding departure. Water temperature at departure from the warm-season range averaged 19??C, but varied among individuals (16-22??C) and was not related to body size or female reproductive status. The presence of industrial warm-water effluents permitted many manatees to overwinter north of their historic winter range, and for some migrants this delayed autumn migrations and facilitated earlier spring migrations. Southward autumn and northward spring migrations lasted an average of 10 and 15 days at mean rates of 33.5 (SD = 7.6) and 27.3 (SD = 10.5) km/day, respectively. The highest rate of travel during migration was 87 km/day (3.6 km/hr) during winter. Manatees overwintering in southeastern Florida often traveled north during mild weather - sometimes reaching their warm-season range - only to return south again with the next major cold front. Manatees were consistent in their seasonal movement patterns across years and showed strong fidelity, to warm-season and winter ranges. Within a season, individuals usually occupied only 1 or 2 core use areas that encompassed about 90% of daily locations. Most manatees returned faithfully to the same seasonal ranges year after year (median distance between range centers was <5 km between years). Seasonal movements of 4 immature manatees tracked as calves with their mothers

Florida, Georgia↗

USGS2005

Euthanasia of neonatal mice with carbon dioxide

Exposure to carbon dioxide (CO2) is the most prevalent method used to euthanize rodents in biomedical research. The purpose of this study was to determine the time of CO2 exposure required to euthanize neonatal mice (0 to 10 days old). Multiple groups of mice were exposed to 100% CO 2 for time periods between 5 and 60 min. Mice were placed in room air for 10 or 20 min after CO2 exposure, to allow for the chance of recovery. If mice recovered at one time point, a longer exposure was examined. Inbred and outbred mice were compared. Results of the study indicated that time to death varied with the age of the animals and could be as long as 50 min on the day of birth and differed between inbred and outbred mice. Institutions euthanizing neonatal mice with CO2 may wish to adjust their CO 2 exposure time periods according the age of the mice and their genetic background. Copyright 2005 by the American Association for Laboratory Animal Science.

Comparative Medicine↗

USGS2009

Variability in population abundance is associated with thresholds between scaling regimes

Discontinuous structure in landscapes may result in discontinuous, aggregated species body-mass patterns, reflecting the scales of structure available to animal communities within a landscape. The edges of these body-mass aggregations reflect transitions between available scales of landscape structure. Such transitions, or scale breaks, are theoretically associated with increased biological variability. We hypothesized that variability in population abundance is greater in animal species near the edge of body-mass aggregations than it is in species that are situated in the interior of body-mass aggregations. We tested this hypothesis by examining both temporal and spatial variability in the abundance of species in the bird community of the Florida Everglades sub-ecoregion, USA. Analyses of both temporal and spatial variability in population abundance supported our hypothesis. Our results indicate that variability within complex systems may be non-random, and is heightened where transitions in scales of process and structure occur. This is the first explicit test of the hypothetical relationship between increased population variability and scale breaks. ?? 2009 by the author(s).

Ecology and Society↗

USGS2010

2009 Observer Survey Report

The USA‐National Phenology Network (USA‐NPN) seeks to engage volunteer observers in collecting phenological observations of plants and animals using consistent standards and to contribute their observations to a national data repository. In March 2009, the National Coordinating Office staff implemented an online monitoring program for 213 plant species. In this pilot year of the program, 547 observers reported phenology observations on one or more plants via the online interface. To learn more about our participants and to improve our program and our participants’ experience, we undertook a survey of individuals registered in the USA‐NPN phenology observation program. This report summarizes the results of the 2009 observer surveys. Two populations were targeted via separate surveys: Individuals who registered with the USA‐NPN plant phenology monitoring program via MyNPN but did not submit any data in 2009 (hereafter termed “non‐reporting participants”), and Individuals who submitted phenology observations via MyNPN in 2009 (hereafter termed “reporting participants”). In general, all participants in the 2009 USA‐NPN plant phenology observation program seemed to have a generally good experience. When asked why they would or would not recommend the program to friends, the majority of comments were of a positive nature, and included explanations such as, “It is an interesting and fairly light duty activity”, “It’s a cool program!”, and “A way to contribute to science”. The most commonly indicated reason for not submitting observations among non‐reporters was getting lost in the registration process (14% of respondents). Another 14% of respondents indicated that they had collected observations but did not submit them online, indicating that more people may be engaged in understanding phenology than our estimates based on data submitted suggest. Survey participants’ suggestions for improving the program fell into several categories, including the need for a more expansive list of plants from which to pick, the ability to monitor animals, and more information on the plants, including photographs of the various phenophases to aid in identification. Participants also requested increased contact from the USA‐NPN, in the form of weekly or monthly emails or newsletters and reminders to collect and submit observations. Many of these suggestions are either already being addressed in changes being made to the monitoring system and online entry system or are planned for the future.

USA-NPN Technical Series↗

USGS2012

Preface

Telemetry provides a powerful and flexible tool for studying fish and other aquatic animals, and its use has become increasingly commonplace. However, telemetry is gear intensive and typically requires more specialized knowledge and training than many other field techniques. As with other scientific methods, collecting good data is dependent on an understanding of the underlying principles behind the approach, knowing how to use the equipment and techniques properly, and recognizing what to do with the data collected. This book provides a road map for using telemetry to study aquatic animals, and provides the basic information needed to plan, implement, and conduct a telemetry study under field conditions. Topics include acoustic or radio telemetry study design, tag implantation techniques, radio and acoustic telemetry principles and case studies, and data management and analysis.

Book chapter↗

USGS2008

Thiamine Deficiency Complex Workshop final report: November 6-7, 2008, Ann Arbor, MI

Fry mortality which was first observed in the late 1960s in Great Lakes salmonines and in Baltic Sea salmon in 1974 has now been linked to thiamine deficiency (historically referred to as Early Mortality Syndrome, or EMS and M74, respectively). Over the past 14 years significant strides have been made in our understanding of this perplexing problem. It is now known that thiamine deficiency causes embryonic mortality in these salmonids. Both overt mortality and secondary effects of thiamine deficiency are observed in juvenile and adult animals. Collectively the morbidity and mortality (fry and adult mortality, secondary metabolic and behavior affects in juveniles and adult fish) are referred to as Thiamine Deficiency Complex (TDC). A workshop was held in Ann Arbor, MI on 6-7 November 2008 that brought together 38 federal, state, provincial, tribal and university scientists to share information, present data and discuss the latest observations on thiamine status of aquatic animals with thiamine deficiency and the causative agent, thiaminase. Twenty presentations (13 oral and 7 posters) detailed current knowledge. In Lake Huron, low alewife Alosa pseudoharengus abundance has persisted and egg thiamine concentrations in salmonines continue to increase, along with evidence of natural reproduction in lake trout Salvelinus namaycush. Lake Michigan Chinook salmon Oncorhynchus tshawytscha appear to have a lower thiamine requirement than other salmonids in the lake. Lake Ontario American eel Anguilla rostrata foraging on alewife have approximately one third the muscle thiamine compared to eels not feeding on alewife, suggesting that eels may be suffering from thiamine deficiency. Secondary effects of low thiamine exist in Great Lakes salmonines and should not be ignored. Thiaminase activity in dreissenid mussels is extremely high but a connection to TDC has not been made. Thiaminase in net plankton was found more consistently in lakes Michigan and Ontario than other lakes evaluated. The biological role of thiaminase I, associated with thiamine deficiency, remains to be determined whereas thiaminase II has been reported to be part of a salvage pathway leading to thiamine synthesis. The use of gene array technology and 3-dimensional histology is adding new understanding to the affects of thiamine deficiency. Research is needed to determine the thiamine status of species feeding on dreissenids, the environmental sources of thiaminase and the biological role of thiaminase I.

Research Status Report↗

USGS2012

Nature's Notebook 2011: Data & participant summary

Introduction The USA National Phenology Network The USA National Phenology Network (USA‐NPN; www.usanpn.org) seeks to engage a diverse range of citizen scientist volunteers, federal, state, and non‐governmental organizations, educators and professional research scientists to collect phenological observations of plants and animals using consistent standards and to contribute their observations to a national data repository. To guide this effort, the USA‐NPN National Coordinating Office (NCO), based in Tucson, Arizona, implemented an online monitoring program for plants and animals, Nature's Notebook , and has developed phenology monitoring protocols and an information management system, which includes the National Phenology Database (NPDb). We are developing a diversity of materials, tools, techniques, and protocols to assist decision making and education related to ecology, wildlife, human health, ecosystem services, natural resource management, biological conservation, and climate change adaptation.

USA-NPN Technical Series↗