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Cooperative Fish and Wildlife Research Units program—2020 Year in review

Established in 1935, the Cooperative Fish and Wildlife Research Units program (CRU program) is a unique cooperative partnership among State fish and wildlife agencies, universities, the Wildlife Management Institute, the U.S. Geological Survey (USGS), and the U.S. Fish and Wildlife Service. Designed to meet the scientific needs of natural resource management agencies and the necessity for trained professionals in the growing field of wildlife management, the program has grown from the original 9 wildlife-only units to a program that today includes 40 Cooperative Fish and Wildlife Research Units located on university campuses in 38 States. The partnerships that form each unit are some of the USGS’s strongest links to Federal and State land and natural resource agencies as mandated by the Cooperative Research and Training Units Act of 1960 (P.L. 86–686). This report highlights the activities and accomplishments of the program and its cooperators for calendar year 2020.

Circular↗

dMODELS, a MATLAB software package for modeling crustal deformation near volcanic centers and active faults using Global Navigation Satellite System data—User guide

dMODELS is a MATLAB software package that implements the most common analytical models used to interpret deformation measurements near faults and active volcanic centers. This manual focuses on inversion of deformation data from the Global Navigation Satellite System (GNSS). The included case studies emphasize the GNSS inversion component of the software. Source models include pressurized spherical, spheroidal, and horizontal sill (penny-crack) magma reservoirs in a homogeneous, elastic, isotropic, flat half-space. A topography correction is available for the spherical source. Dikes and faults are described following the mathematical notation for the rectangular dislocations in a homogeneous, elastic, flat half-space. Equations have been reviewed for typographical errors present in the original literature and verified against finite-element method numerical models. GNSS data from the 2006 eruption at Augustine Volcano, Alaska; the 1998–2000 unrest at Taal Volcano, Philippines; and the 2009 earthquake in L’Aquila, Italy, are used to demonstrate the application of the software package.

Techniques and Methods↗

Assessing risk for enhanced cyanobacteria, phytoplankton, and pathogens with changes in water level regime with potential application to Lake Powell and Lake Mead: A mixed methods literature review

Water levels in freshwater reservoirs worldwide are changing due to altered climate, management practices, and increasing human demand for water. In the desert southwestern USA, managers are considering significant changes to reservoir operation strategies and water management in response to consumptive use and ongoing drought. To inform reservoir management decision-making, we reviewed current peer-reviewed literature to identify the effects of decreasing or increasing water level on phytoplankton, cyanobacteria, Escherichia coli , and Naegleria spp. We identified 34 studies containing 42 individual waterbodies that investigated the effects of water level increases or decreases on phytoplankton or cyanobacteria. We found that water level decreases resulted in a higher likelihood of increased cyanobacteria, and that phytoplankton were more likely to decrease in response to water level increases. Most of the waterbodies included in the literature review were eutrophic or hypereutrophic, underscoring the need to explore the effects of water level fluctuations on oligotrophic systems. We only identified five studies on E. coli through our review, and no studies on Naegleria spp. We supplemented our review with regional white papers and case studies within the Colorado River Basin and the Rio Grande River Basin to highlight relevant research. Prior and ongoing research highlights the need to explore impacts of water level fluctuations on phytoplankton and cyanobacteria to guide future management decision-making.

Arizona, Utah, Nevada↗

Study design and methods of the Wells and Enteric disease Transmission (WET) Trial, a randomised controlled trial

Introduction: The burden of disease attributed to drinking water from private wells is not well characterised. The Wells and Enteric disease Transmission trial is the first randomised controlled trial to estimate the burden of disease that can be attributed to the consumption of untreated private well water. To estimate the attributable incidence of gastrointestinal illness (GI) associated with private well water, we will test if the household treatment of well water by ultraviolet light (active UV device) versus sham (inactive UV device) decreases the incidence of GI in children under 5 years of age. Methods and analysis: The trial will enrol (on a rolling basis) 908 families in Pennsylvania, USA, that rely on private wells and have a child 3 years old or younger. Participating families are randomised to either an active whole-house UV device or a sham device. During follow-up, families will respond to weekly text messages to report the presence of signs and symptoms of gastrointestinal or respiratory illness and will be directed to an illness questionnaire when signs/symptoms are present. These data will be used to compare the incidence of waterborne illness between the two study groups. A randomly selected subcohort submits untreated well water samples and biological specimens (stool and saliva) from the participating child in both the presence and absence of signs/symptoms. Samples are analysed for the presence of common waterborne pathogens (stool and water) or immunoconversion to these pathogens (saliva). Ethics: Approval has been obtained from Temple University’s Institutional Review Board (Protocol 25665). The results of the trial will be published in peer-reviewed journals. Trial registration number: NCT04826991.

Pennsylvania↗

Geologic map transecting the highland/lowland boundary zone, Arabia Terra, Mars; quadrangles 30332, 35332, 40332, and 45332

Arabia Terra is a large region of cratered terrane extending from about 20° W. longitude eastward across the prime meridian to about 300° W. longitude for an average east-west width of about 5,000 km. The northern boundary ranges from 40° N. to 45° N.; the southern boundary is a poorly defined zone at about 0° N. Thus, the north-south width is about 2,500 km. Except for the westernmost part, Arabia Terra has an albedo higher than surrounding terranes. The four quadrangles mapped (30332, 35332, 40332, 45332) provide a north-south strip from highland terrane in the south to lowland terrane in the north. The northern portion of Arabia Terra is the type region for both fretted terrane and fretted valleys and, along with the immediately adjacent northern plains, is also the site of some of the best examples of putative flow deposits present as aprons around isolated knobs and mesas or as deposits on the floors of fretted valleys and on the lowland surface. Mass wasting, eolian erosion or deposition, glacial scouring, fluvial or shoreline erosion, deposition from an ocean, hydrovolcanism, plateau volcanism, and faulting have all been proposed to account for the topography and crater characteristics in northern Arabia Terra. Although underlain by what appears to be typical highland terrane, Arabia Terra is anomalously low, with elevations generally below the planetary reference. Probably the most important question concerning the global-scale tectonic history of Mars is the origin of the crustal dichotomy. The northern lowland is not only several kilometers lower than the southern highland, it also is surfaced by materials that are significantly younger than surface materials in the southern highland. The young surface materials in the lowland rest unconformably on basement material having an age comparable to the exposed ancient highland terrane to the south. The age of the dichotomy continues to be controversial, as does the mechanism for its formation, as reviewed by McGill and Squyres (1991). Gravity and topography data from Mars Global Surveyor, however, does appear to favor early formation due to internal processes. Because complex depositional and erosional events affected the boundary since its formation, the cause and history of these events must be unraveled before we can directly attack the fundamental question of the reason for the dichotomy.

IMAP↗

Agricultural chemicals and the quality of prairie-pothole wetlands for adult and juvenile waterfowl - What are the concerns?

A review of the literature and results of ongoing studies indicates that the potential for agricultural chemicals, particularly aerially-applied insecticides, to enter prairie potholes and reduce the quality of these wetlands for waterfowl is great, and that a coordinated effort by farmers, wildlife managers, and regulatory agencies is needed to minimize these impacts

Biological Report↗

Climate change and the global redistribution of biodiversity: Substantial variation in empirical support for expected range shifts

Background Among the most widely predicted climate change-related impacts to biodiversity are geographic range shifts, whereby species shift their spatial distribution to track their climate niches. A series of commonly articulated hypotheses have emerged in the scientific literature suggesting species are expected to shift their distributions to higher latitudes, greater elevations, and deeper depths in response to rising temperatures associated with climate change. Yet, many species are not demonstrating range shifts consistent with these expectations. Here, we evaluate the impact of anthropogenic climate change (specifically, changes in temperature and precipitation) on species’ ranges, and assess whether expected range shifts are supported by the body of empirical evidence. Methods We conducted a Systematic Review, searching online databases and search engines in English. Studies were screened in a two-stage process (title/abstract review, followed by full-text review) to evaluate whether they met a list of eligibility criteria. Data coding, extraction, and study validity assessment was completed by a team of trained reviewers and each entry was validated by at least one secondary reviewer. We used logistic regression models to assess whether the direction of shift supported common range-shift expectations (i.e., shifts to higher latitudes and elevations, and deeper depths). We also estimated the magnitude of shifts for the subset of available range-shift data expressed in distance per time (i.e., km/decade). We accounted for methodological attributes at the study level as potential sources of variation. This allowed us to answer two questions: (1) are most species shifting in the direction we expect (i.e., each observation is assessed as support/fail to support our expectation); and (2) what is the average speed of range shifts? Review findings We found that less than half of all range-shift observations (46.60%) documented shifts towards higher latitudes, higher elevations, and greater marine depths, demonstrating significant variation in the empirical evidence for general range shift expectations. For the subset of studies looking at range shift rates, we found that species demonstrated significant average shifts towards higher latitudes (average = 11.8 km/dec) and higher elevations (average = 9 m/dec), although we failed to find significant evidence for shifts to greater marine depths. We found that methodological factors in individual range-shift studies had a significant impact on the reported direction and magnitude of shifts. Finally, we identified important variation across dimensions of range shifts (e.g., greater support for latitude and elevation shifts than depth), parameters (e.g., leading edge shifts faster than trailing edge for latitude), and taxonomic groups (e.g., faster latitudinal shifts for insects than plants). Conclusions Despite growing evidence that species are shifting their ranges in response to climate change, substantial variation exists in the extent to which definitively empirical observations confirm these expectations. Even though on average, rates of shift show significant movement to higher elevations and latitudes for many taxa, most species are not shifting in expected directions. Variation across dimensions and parameters of range shifts, as well as differences across taxonomic groups and variation driven by methodological factors, should be considered when assessing overall confidence in range-shift hypotheses. In order for managers to effectively plan for species redistribution, we need to better account for and predict which species will shift and by how much. The dataset produced for this analysis can be used for future research to explore additional hypotheses to better understand species range shifts.

Journal of Environmental Evidence↗

High priority needs for range-wide monitoring of North American landbirds

This document is an extension of work done for the Partners in Flight North American Landbird Conservation Plan (Rich et al. 2004). The Continental Plan reviewed conservation status of the 448 native landbird species that regularly breed in the United States and Canada. Two groups of species were identified as having high conservation importance: the PIF Watch List, made up of species for which there is conservation concern, and Stewardship Spices that are particularly characteristic of regional avifaunas. In addition, continental scale monitoring needs were identified for all species. Here we extend the monitoring needs aspect of the Plan, providing additional detail and suggesting the best means of filling the gaps in broad-scale, long-term trend monitoring. This analysis and report was compiled by the Partners in Flight (PIF) Science Committee as a contribution to current work by the North American Bird Conservation Initiative to assess the status of bird population monitoring in North America and to make recommendations for improvements.

Partners in Flight Technical Series↗

Effects of highway deicing chemicals on shallow unconsolidated aquifers in Ohio — Final report

As a result of concerns about salt intrusion into drinking water aquifers, the effects of highway deicing chemicals on shallow aquifers were studied at eight locations in Ohio from 1988 through 2002. The study was done by the U.S. Geological Survey, in cooperation with the Ohio Department of Transportation and the Federal Highway Administration. Sites were selected along major undivided highways where drainage is by open ditches and ground-water flow is approximately perpendicular to the highway. Records of deicer application rates were kept, and apparent movement of deicing chemicals through shallow, unconsolidated aquifers was monitored by means of periodic measurements of specific conductance and concentrations of dissolved sodium, calcium, and chloride. The State routes monitored were the following: State Route (SR) 3 in Ashland County, SR 84 in Ashtabula County, SR 29 in Champaign County, SR 4 in Clark County, SR 2 in Lucas County, SR 104 in Pickaway County, SR 14 in Portage County, and SR 97 in Richland County. The study began in 1988 with background data collection, extensive literature review, and site selection. This process, including drilling of wells at numerous test sites and the eight selected sites, lasted 3 years. Routine groundwater sampling at 4- to 6-week intervals began in January 1991 and continued through September 1999. A multilevel, passive flow ground-water sampling device was constructed and used. Other conditions monitored on a regular basis included ground-water level (monitored continuously), specific conductance, air and soil temperature, precipitation,chloride concentration in soil samples, and deicing-chemical application times and rates. Evidence from water analysis, specific-conductance measurements, and surface-geophysical measurements indicates that three of the eight sites (Ashtabula County, Lucas County, and Portage County sites) were affected by direct application of deicing chemicals. Climatic data collected during the study show that cold weather, and therefore deicing-chemical application rates, varied from south to north across the State. As a consequence, only minor traces of dissolved chloride (mean, 24–43 mg/L (milligrams per liter)) above background concentrations (mean, 13–23 mg/L) were determined in ground-water samples from the southernmost sites (approximately 3930' to 40 N latitude—Champaign County, Clark County, and Pickaway County). At the Ashland and Richland County sites (approximately 4030' N latitude), dissolved-chloride concentrations increased above background concentrations only intermittently (mean background concentrations 4–41 mg/L, rising to a mean of 40–56 mg/L in downgradient wells). At the northernmost sites (41 30' to 42 N latitude—Lucas County, Portage County, and Ashtabula County), deicing-chemical application was consistent throughout the winter, and downgradient dissolved-chloride concentrations (mean, 124–345 mg/L) rarely returned to background concentrations (mean, 7–37 mg/L) throughout the study period. Other factors than application rate that may affect the movement of deicing chemicals through an aquifer were precipitation amounts, the types of subsurface materials, ground-water velocity and gradient, hydraulic conductivity, soil type, land use, and Ohio Department of Transportation deicing priority.

Ohio↗

Practical guidance for engaging end-users and experts in developing scientific tools

This report provides actionable guidance for scientists developing scientific tools that inform on-the-ground decision making. Scientific tools, in the context of this report, are technology or protocols that help practitioners collect and analyze their own data, and information products and web tools that practitioners could use to inform decisions. Engaging end-users and fellow experts is fundamental to the creation of useful scientific tools. Scientists can use clear and specific direction on action steps and activities to effectively engage with end-users and fellow experts during development. Our study explores lessons learned from six U.S. Geological Survey projects that designed and implemented engagement activities with end-users and experts to coproduce scientific tools for natural resource managers. U.S. Geological Survey teams engaged end-users and experts across the United States from Federal, State, and local governments; universities; Tribes; territories; and nongovernmental organizations in designing and developing scientific tools intended to support end-users in their work. An online survey with 98 participants measured satisfaction across several indicators of successful engagement, including engagement activity frequency, sufficient opportunities to provide feedback, feedback implementation, inclusion of necessary perspectives, and functionality of the tool for end-users. Semistructured interviews were held with project leads, during which the project leads reviewed a summary of the survey results. The project leads reflected on the engagement efforts used in their project, then described lessons learned from the engagement experience and participant feedback. Common themes for ensuring effective engagement identified through thematic analysis included engaging end-users during product conceptualization; establishing clear roles and expectations; considering who end-users are and how end-users may use the tool; recruiting participants through your network, boundary spanners, and leadership; understanding individual use cases; communicating how feedback was integrated into the product; and strategically using virtual meeting tools. This guide shares practical steps and exercises for planning and facilitating effective engagement based on lessons learned from project leads and case study summaries of each project.

Scientific Investigations Report↗

Compendium to invasive annual grass spatial products for the western United States, January 2010-February 2021

Invasive annual grasses (IAGs) degrade native plant communities, alter fire cycles, impact ecosystem processes, and threaten the persistence of some species. Therefore, controlling the spread of IAGs has become a land management priority in the western United States. A wide array of geospatial data has been developed in the last decade to help land managers combat the invasion and expansion of non-native grasses by identifying areas where these species are likely to occur. However, choosing the most appropriate spatial product to address specific management concerns is a daunting task for many land managers, particularly with the rapid increase in the number of IAG spatial products available. To aid potential users in assessing these products, we reviewed and summarized 23 datasets that captured the three IAG species of most concern to rangeland management— Bromus tectorum (cheatgrass), Taeniatherum caput-medusae (medusahead), and Ventenata dubia (ventenata). To be included in this review, products were required to include part of the western United States, be regional or National in scale, and have been published between January 2010 and February 2021. This review, part of a series of informational data resources, is the compendium to an Excel-readable database and provides a 2-page summary of each spatial data product to assist land managers in understanding and selecting the best available spatial data for their management needs.

western United States↗

Climatic factors related to land-use planning in the Puget Sound basin, Washington

Climate is a basic part of the natural environment and exerts a strong influence on many of man's activities. In the Puget Sound basin especially, effective land-use planning requires consideration of climatic influences, for the climate differs significantly in the various parts of the area. However, climatic information may not be given adequate consideration in the planning process if pertinent data are not readily available or if the importance of some climatic features is not apparent. The purpose of this study is to review available data related to the climate of the Puget Sound basin and to present selected climatic information along with an evaluation of its significance and general adequacy for planning purposes. This is part of continuing efforts aimed at imporving the accessibility and usefulness of environmental and other data needed for land-use planning, resource development, and environmental protection.

Washington↗

Field Methods and Quality-Assurance Plan for Quality-of-Water Activities, U.S. Geological Survey, Idaho National Laboratory, Idaho

Water-quality activities conducted by the staff of the U.S. Geological Survey (USGS) Idaho National Laboratory (INL) Project Office coincide with the USGS mission of appraising the quantity and quality of the Nation's water resources. The activities are conducted in cooperation with the U.S. Department of Energy's (DOE) Idaho Operations Office. Results of the water-quality investigations are presented in various USGS publications or in refereed scientific journals. The results of the studies are highly regarded, and they are used with confidence by researchers, regulatory and managerial agencies, and interested civic groups. In its broadest sense, quality assurance refers to doing the job right the first time. It includes the functions of planning for products, review and acceptance of the products, and an audit designed to evaluate the system that produces the products. Quality control and quality assurance differ in that quality control ensures that things are done correctly given the 'state-of-the-art' technology, and quality assurance ensures that quality control is maintained within specified limits.

Open-File Report↗

The Mekong Fish Network: expanding the capacity of the people and institutions of the Mekong River Basin to share information and conduct standardized fisheries monitoring

The Mekong River is one of the most biologically diverse rivers in the world, and it supports the most productive freshwater fisheries in the world. Millions of people in the Lower Mekong River Basin (LMB) countries of the Union of Myanmar (Burma), Lao People’s Democratic Republic, the Kingdom of Thailand, the Kingdom of Cambodia, and the Socialist Republic of Vietnam rely on the fisheries of the basin to provide a source of protein. The Mekong Fish Network Workshop was convened in Phnom Penh, Cambodia, in February 2012 to discuss the potential for coordinating fisheries monitoring among nations and the utility of establishing standard methods for short- and long-term monitoring and data sharing throughout the LMB. The concept for this network developed out of a frequently cited need for fisheries researchers in the LMB to share their knowledge with other scientists and decisionmakers. A fish monitoring network could be a valuable forum for researchers to exchange ideas, store data, or access general information regarding fisheries studies in the LMB region. At the workshop, representatives from governments, nongovernmental organizations, and universities, as well as participating foreign technical experts, cited a great need for more international cooperation and technical support among them. Given the limited staff and resources of many institutions in the LMB, the success of the proposed network would depend on whether it could offer tools that would provide benefits to network participants. A potential tool discussed at the workshop was a user-friendly, Web-accessible portal and database that could help streamline data entry and storage at the institutional level, as well as facilitate communication and data sharing among institutions. The workshop provided a consensus to establish pilot standardized data collection and database efforts that will be further reviewed by the workshop participants. Overall, workshop participants agreed that this is the type of support that is greatly needed to answer their most pressing questions and to enable local researchers and resource managers to monitor and sustain the valuable and diverse aquatic life of the Mekong River.

Mekong River↗

Field methods and quality-assurance plan for water-quality activities and water-level measurements, U.S. Geological Survey, Idaho National Laboratory, Idaho

Water-quality activities and water-level measurements by the personnel of the U.S. Geological Survey (USGS) Idaho National Laboratory (INL) Project Office coincide with the USGS mission of appraising the quantity and quality of the Nation’s water resources. The activities are carried out in cooperation with the U.S. Department of Energy (DOE) Idaho Operations Office. Results of the water-quality and hydraulic head investigations are presented in various USGS publications or in refereed scientific journals and the data are stored in the National Water Information System (NWIS) database. The results of the studies are used by researchers, regulatory and managerial agencies, and interested civic groups. In the broadest sense, quality assurance refers to doing the job right the first time. It includes the functions of planning for products, review and acceptance of the products, and an audit designed to evaluate the system that produces the products. Quality control and quality assurance differ in that quality control ensures that things are done correctly given the “state-of-the-art” technology, and quality assurance ensures that quality control is maintained within specified limits.

Open-File Report↗

Environmental Contaminants and Terrestrial Vertebrates: Effects on Populations, Communities, and Ecosystems

The desire of resource managers, risk assessors, and the general public to better understand the consequences of environmental contamination has produced a strong and growing need for information on the effects of contaminants on populations and groups of species, and over moderate to large areas of land or water. However, the problems associated with research involving populations and groups of species or large and complex geographic areas, especially in terrestrial environments, are well known within the scientific community. With the previous thoughts in mind, an interactive symposium was held at the University of Maryland in October 1998. The purpose of the symposium was to review and critically evaluate our understanding of the effects of contaminants on terrestrial vertebrates at levels of organization above that of the individual. Invited background and technical presentations provided a common baseline of information for symposium participants. Discussion groups were then asked to critically evaluate the topics of two technical sessions. Several presentations of recent or ongoing research provided participants with examples of current approaches to assessments of the effects of contaminants on terrestrial vertebrates at the population or higher level of organization. The book consists of 10 chapters written by presenters at the symposium and three chapters conveying the reports of discussion group.

SETAC Special Publications Series.↗

Density matters: Review of approaches to setting organism-based ballast water discharge standards

As part of their effort to develop national ballast water discharge standards under NPDES permitting, the Office of Water requested that WED scientists identify and review existing approaches to generating organism-based discharge standards for ballast water. Six potential approaches were identified and the utility and uncertainties of each approach was evaluated. During the process of reviewing the existing approaches, the WED scientists, in conjunction with scientists at the USGS and Smithsonian Institution, developed a new approach (per capita invasion probability or "PCIP") that addresses many of the limitations of the previous methodologies. THE PCIP approach allows risk managers to generate quantitative discharge standards using historical invasion rates, ballast water discharge volumes, and ballast water organism concentrations. The statistical power of sampling ballast water for both the validation of ballast water treatment systems and ship-board compliance monitoring with the existing methods, though it should be possible to obtain sufficient samples during treatment validation. The report will go to a National Academy of Sciences expert panel that will use it in their evaluation of approaches to developing ballast water discharge standards for the Office of Water.

Report↗

Power analysis and trend detection for water quality monitoring data. An application for the Greater Yellowstone Inventory and Monitoring Network

An important consideration for long term monitoring programs is determining the required sampling effort to detect trends in specific ecological indicators of interest. To enhance the Greater Yellowstone Inventory and Monitoring Network’s water resources protocol(s) (O’Ney 2006 and O’Ney et al. 2009 [under review]), we developed a set of tools to: (1) determine the statistical power for detecting trends of varying magnitude in a specified water quality parameter over different lengths of sampling (years) and different within-year collection frequencies (monthly or seasonal sampling) at particular locations using historical data, and (2) perform periodic trend analyses for water quality parameters while addressing seasonality and flow weighting. A power analysis for trend detection is a statistical procedure used to estimate the probability of rejecting the hypothesis of no trend when in fact there is a trend, within a specific modeling framework. In this report, we base our power estimates on using the seasonal Kendall test (Helsel and Hirsch 2002) for detecting trend in water quality parameters measured at fixed locations over multiple years. We also present procedures (R-scripts) for conducting a periodic trend analysis using the seasonal Kendall test with and without flow adjustment. This report provides the R-scripts developed for power and trend analysis, tutorials, and the associated tables and graphs. The purpose of this report is to provide practical information for monitoring network staff on how to use these statistical tools for water quality monitoring data sets.

Natural Resource Report↗