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At least 1,441 records · Page 80Linked to original sources

Skin and fur bacterial diversity and community structure on American southwestern bats: effects of habitat, geography and bat traits

Microorganisms that reside on and in mammals, such as bats, have the potential to influence their host’s health and to provide defenses against invading pathogens. However, we have little understanding of the skin and fur bacterial microbiota on bats, or factors that influence the structure of these communities. The southwestern United States offers excellent sites for the study of external bat bacterial microbiota due to the diversity of bat species, the variety of abiotic and biotic factors that may govern bat bacterial microbiota communities, and the lack of the newly emergent fungal disease in bats, white-nose syndrome (WNS), in the southwest. To test these variables, we used 16S rRNA gene 454 pyrosequencing from swabs of external skin and fur surfaces from 163 bats from 13 species sampled from southeastern New Mexico to northwestern Arizona. Community similarity patterns, random forest models, and generalized linear mixed-effects models show that factors such as location (e.g., cave-caught versus surface-netted) and ecoregion are major contributors to the structure of bacterial communities on bats. Bats caught in caves had a distinct microbial community compared to those that were netted on the surface. Our results provide a first insight into the distribution of skin and fur bat bacteria in the WNS-free environment of New Mexico and Arizona. More importantly, it provides a baseline of bat external microbiota that can be explored for potential natural defenses against pathogens.

PeerJ↗

Genomic evolution, recombination, and inter-strain diversity of chelonid alphaherpesvirus 5 from Florida and Hawaii green sea turtles with fibropapillomatosis

Chelonid alphaherpesvirus 5 (ChHV5) is a herpesvirus associated with fibropapillomatosis (FP) in sea turtles worldwide. Single-locus typing has previously shown differentiation between Atlantic and Pacific strains of this virus, with low variation within each geographic clade. However, a lack of multi-locus genomic sequence data hinders understanding of the rate and mechanisms of ChHV5 evolutionary divergence, as well as how these genomic changes may contribute to differences in disease manifestation. To assess genomic variation in ChHV5 among five Hawaii and three Florida green sea turtles, we used high-throughput short-read sequencing of long-range PCR products amplified from tumor tissue using primers designed from the single available ChHV5 reference genome from a Hawaii green sea turtle. This strategy recovered sequence data from both geographic regions for approximately 75% of the predicted ChHV5 coding sequences. The average nucleotide divergence between geographic populations was 1.5%; most of the substitutions were fixed differences between regions. Protein divergence was generally low (average 0.08%), and ranged between 0 and 5.3%. Several atypical genes originally identified and annotated in the reference genome were confirmed in ChHV5 genomes from both geographic locations. Unambiguous recombination events between geographic regions were identified, and clustering of private alleles suggests the prevalence of recombination in the evolutionary history of ChHV5. This study significantly increased the amount of sequence data available from ChHV5 strains, enabling informed selection of loci for future population genetic and natural history studies, and suggesting the (possibly latent) co-infection of individuals by well-differentiated geographic variants.

Florida, Hawaii↗

Genetic assessment of a bighorn sheep population expansion in the Silver Bell Mountains, Arizona

Background: The isolated population of desert bighorn sheep in the Silver Bell Mountains of southern Arizona underwent an unprecedented expansion in merely four years. We hypothesized that immigration from neighboring bighorn sheep populations could have caused the increase in numbers as detected by Arizona Game and Fish Department annual aerial counts. Methods: We applied a multilocus genetic approach using mitochondrial DNA and nuclear microsatellite markers for genetic analyses to find evidence of immigration. We sampled the Silver Bell Mountains bighorn sheep before (2003) and during (2015) the population expansion, and a small number of available samples from the Gila Mountains (southwestern Arizona) and the Morenci Mine (Rocky Mountain bighorn) in an attempt to identify the source of putative immigrants and, more importantly, to serve as comparisons for genetic diversity metrics. Results: We did not find evidence of substantial gene flow into the Silver Bell Mountains population. We did not detect any new mitochondrial haplotypes in the 2015 bighorn sheep samples. The microsatellite analyses detected only one new allele, in one individual from the 2015 population that was not detected in the 2003 samples. Overall, the genetic diversity of the Silver Bell Mountains population was lower than that seen in either the Gila population or the Morenci Mine population. Discussion: Even though the results of this study did not help elucidate the precise reason for the recent population expansion, continued monitoring and genetic sampling could provide more clarity on the genetic demographics of this population. Keywords: Bighorn sheep; Microsatellites; Migration; Mitochondrial DNA; Ovis canadensis; Population growth; Silver Bell Mountains.

Arizona↗

Slender salamanders (genus Batrachoseps) reveal Southern California to be a center for the diversification, persistence, and introduction of salamander lineages

Background The southern California biodiversity hotspot has had a complex geological history, with both plate tectonic forces and sea level changes repeatedly reconfiguring the region, and likely driving both lineage splittings and extinctions. Here we investigate patterns of genetic divergence in two species of slender salamanders (Plethodontidae: Batrachoseps ) in this region. The complex geological history in combination with several organismal traits led us to predict that these species harbor multiple ancient mitochondrial lineages endemic to southern California. These species belong to a clade characterized by fine-scale mitochondrial structure, which has been shown to track ancient splits. Both focal species, Batrachoseps major and B. nigriventris , are relatively widely distributed in southern California, and estimated to have persisted there across millions of years. Recently several extralimital populations of Batrachoseps were found in the San Joaquin Valley of California, a former desert area that has been extensively modified for agriculture. The origins of these populations are unknown, but based on morphology, they are hypothesized to result from human-mediated introductions of B. major . Methods We sequenced the mitochondrial gene cytochrome b from a geographically comprehensive sampling of the mitochondrial lineages of B. major and B. nigriventris that are endemic to southern California. We used phylogenetic analyses to characterize phylogeographic structure and identify mitochondrial contact zones. We also included the San Joaquin Valley samples to test whether they resulted from introductions. We used a bootstrap resampling approach to compare the strength of isolation-by-distance in both Batrachoseps species and four other salamander species with which they co-occur in southern California. Results The northern lineage of B. major harbors at least eight deeply differentiated, geographically cohesive mitochondrial subclades. We identify geographic contact between many of these mtDNA lineages and some biogeographic features that are concordant with lineage boundaries. Batrachoseps nigriventris also has multiple deeply differentiated clades within the region. Comparative analyses highlight the smaller spatial scales over which mitochondrial divergence accumulates in Batrachoseps relative to most other salamander species in southern California. The extralimital populations of Batrachoseps from the San Joaquin Valley are assigned to B. major and are shown to result from at least two independent introductions from different source populations. We also suggest that B. major on Catalina Island, where it is considered native, may be the result of an introduction. Some of the same traits that facilitate the build-up of deep phylogeographic structure in Batrachoseps likely also contribute to its propensity for introductions, and we anticipate that additional introduced populations will be discovered.

California↗

Mate preference in wild and domesticated (game-farm) mallards: II. Pairing success

Experiments were designed to determine whether assortative mating occurs in wild and game-farm mallard strains (Anas platyrhynchos). Mallard males of either strain raised with females of their own strain courted females of their own strain more than females of the opposite strain, and these males were only successful in pairing with females of their own strain. Males raised with females of the opposite strain courted wild and game-farm females with equal intensity. They were successful in pairing with females of either strain. While this study does not settle the question of possible gene flow between these two mallard populations, it does indicate that there is a potential barrier to panmixia.

Animal Behaviour↗

Sea otter population structure and ecology in Alaska

Sea otters are the only fully marine otter. They share a common ancestry with the Old World land otters, but their route of dispersal to the New World is uncertain. The historic range of the species is along the northern Pacific Ocean rim, between central Baja California and the islands of northern Japan. Because they forage almost exclusively on bottom-dwelling marine invertebrates such as clams, snails, crabs, and sea urchins, they predominantly occur near shore. Their offshore distribution is limited by their diving ability; although they are capable of diving to more than 100 meters deep, most of their feeding takes place between the shoreline and depths of 40 meters. They are social animals, generally resting in protected bays or kelp forests in groups, commonly referred to as rafts. Because they are gregarious, possess a fine fur, and occur primarily near shore, they have been exploited by humans for as long as they have co-occupied coastal marine communities. During the late Pleistocene, glacial advances and retreats in the northern latitudes likely influenced genetic exchange within the sea otter’s northern range. When the glaciers were at their maximum, ice sheets extended over large coastal areas, isolating sea otter populations and causing local extinctions. During periods of glacial retreat, sea otters likely recolonized the newly available habitats, allowing exchange of individuals and gene flow between populations. Beginning in about 1750, sea otter populations underwent dramatic declines as a direct result of commercial harvest for their furs. Explorations by Vitus Bering led to the discovery of abundant sea otter populations in the Aleutian Islands. The early harvest, conducted by Russians with enslaved Aleut hunters, began in the eastern Aleutians. Eventually the harvest became multinational and contributed significantly to the exploration and settlement of the North Pacific coastline by Europeans. There were two distinct periods of harvest—one reaching its peak about 1800 and averaging about 15,000 per year and a second about 1870, averaging about 4,000 per year. The causes for this harvest pattern are unknown, but it may represent two distinct periods of overexploitation separated by a brief period of population recovery. By 1890 the species had been eliminated throughout most of its range, persisting in small numbers at 13 isolated locations in California, Alaska, and Russia. The number of sea otters that survived the fur trade is unknown, but available data suggest that some remnant populations may have been as small as a few dozen individuals. In 1911, sea otters were afforded protection under the International Fur Seal Treaty, and populations apparently responded by gradually increasing in abundance. The rates of population recovery varied among locations, averaging 9% annually and ranging from 6 to 13%. The population at Amchitka Island in the central Aleutians had the highest growth rate among those surviving, apparently reaching carrying capacity by about 1950. Efforts to aid the recovery of the species into the vast unoccupied habitats between California and Prince William Sound began in 1965. Sea otters from Amchitka and Prince William Sound were translocated to Oregon, Washington, British Columbia, and several locations in southeastern Alaska. With the exception of Oregon, these translocations have resulted in the establishment of successful colonies. Population growth rates of translocated sea otters have been significantly greater than among remnant populations, averaging 21% and ranging from 18 to 24%. We don’t know why the growth rates of the remnant and translocated populations are so different, but it may be partly because of the abundant food and space available at the translocated sites. The varying patterns of sea otter population decline and recovery provide a unique and powerful tool for studying the effects of historic reductions on populations, as well as how populations respond to varying environmental conditions. During the past decade, using molecular genetics, researchers have been trying to understand how sea otter populations might differ throughout the North Pacific and what effects population reductions and recovery have had on population genetics. Also, as a result of the varying degree of recovery among isolated populations, we have the opportunity to contrast life history attributes (such as condition, reproduction, and survival) among populations throughout their range. These contrasts may be useful in developing methods to assess the status of populations where traditional methods of surveying abundance are difficult and expensive.

Alaska↗

Unusual bacterioplankton community structure in ultra-oligotrophic Crater Lake

The bacterioplankton assemblage in Crater Lake, Oregon (U.S.A.), is different from communities found in other oxygenated lakes, as demonstrated by four small subunit ribosomal ribonucleic acid (SSU rRNA) gene clone libraries and oligonucleotide probe hybridization to RNA from lake water. Populations in the euphotic zone of this deep (589 m), oligotrophic caldera lake are dominated by two phylogenetic clusters of currently uncultivated bacteria: CL120-10, a newly identified cluster in the verrucomicrobiales, and ACK4 actinomycetes, known as a minor constituent of bacterioplankton in other lakes. Deep-water populations at 300 and 500 m are dominated by a different pair of uncultivated taxa: CL500-11, a novel cluster in the green nonsulfur bacteria, and group I marine crenarchaeota. b-Proteobacteria, dominant in most other freshwater environments, are relatively rare in Crater Lake (<=16% of nonchloroplast bacterial rRNA at all depths). Other taxa identified in Crater Lake libraries include a newly identified candidate bacterial division, ABY1, and a newly identified subcluster, CL0-1, within candidate division OP10. Probe analyses confirmed vertical stratification of several microbial groups, similar to patterns observed in open-ocean systems. Additional similarities between Crater Lake and ocean microbial populations include aphotic zone dominance of group I marine crenarchaeota and green nonsulfur bacteria. Comparison of Crater Lake to other lakes studied by rRNA methods suggests that selective factors structuring Crater Lake bacterioplankton populations may include low concentrations of available trace metals and dissolved organic matter, chemistry of infiltrating hydrothermal waters, and irradiation by high levels of ultraviolet light.

Limnology and Oceanography↗

Atlantic salmon brood stock management and breeding handbook

Anadromus runs of Atlantic salmon have been restored to the Connecticut, Merrimack, Pawcatuck, Penobscot, and St. Croix rivers in New England by the stocking of more than 8 million smolts since 1948. Fish-breeding methods have been developed that minimize inbreeding and domestication and enhance natural selection. Methods are available to advance the maturation of brood stock, control the sex of production lots and store gametes. Current hatchery practices emphasize the use of sea-run brood stock trapped upon return to the rivers and a limited number of captive brood stock and rejuvenated kelts. Fish are allowed to mature naturally, after which they are spawned and incubated artificially. Generally, 1-year smolts are produced, and excess fish are stocked as fry in headwater streams. Smolts are stocked during periods of rising water in spring. Self-release pools are planned that enable smolts to choose the emigration time. Culturists keep good records that permit evaluation of the performance of strains and the effects of breeding practices. As Atlantic salmon populations expand, culturists must use sound breeding methods that enhance biotic potential while maintaining genetic diversity and protecting unique gene pools.

Biological Report↗

Canada geese of the Patuxent Wildlife Research Center: family relationships, behavior and productivity

Geese described are non-migratory, free-flying Todd's Canada geese (Branta canadensis interior). The genealogy of 261 of these geese was traced by archival research and three years of field observations. Nest locations and densities, preferences for various types of artificial nest structures, clutch sizes, hatching success, brood survival to flight stage, and food habits were recorded. Resul ts indicate geese may:,pair as yearlings, but these bonds may be broken and re-formed before breeding. Pair bonding generally resulted in geese of similar ages remaining together until the death of one partner, although re-pairing, polygamy, and pairing between broodmates also occurred. The dominance hierarchy of related birds strongly influenced the position of 'outsiders' pairing with indigenous females. Dominant status passed not only from male to male, but, upon the death of the dominant male, in at least one instance, the surviving female retained dominant status. Gang broods were composed of progeny of the rearing pair, plus goslings relinquished by female offspring or siblings of the rearing pair. Among indentifiable geese, gang broods were reared by the dominant pair on each impoundment. Geese retained their family integrity both in flight and during the post-molt dispersion. Female and males paired with local females, nested in their natal areas. No significant relationship (P < 0.05) was found between clutch size and age of the female. Twelve-year productivity of the Patuxent geese appeared related to the reproductive success of a specific resident family. Collars, legbands, and telemetry were initially used to distinguish conspecifics. It was subsequently discovered that individual geese could be recognized by cheek-patch patterns, unusual plumage, or mannerisms. It is suggested that cheek-patch similarities in related Canada geese might be used to trace gene flow within flocks, and may be used for individual recognition by other Canada geese.

Book↗

Management to conserve forest ecosystems

Historically, management of forests for wildlife has emphasized creation of openings and provision for a maximum of edge habitats. Wildlife managers have believed, quite logically, that increased sunlight enhances productivity among plants and insects, resulting in greater use by game animals and other wildlife. Recent studies comparing breeding bird populations of extensive forests with those of isolated woodlots have shown that the smaller woodlots, especially those under 35 ha (about 85 acres), lack many species that are typical of the larger tracts. The missing species can be predicted, and basically are the neotropical migrants. These long-distance migrants share several characteristics that make them especially vulnerable to reproductive failure in situations where predation and cowbird parasitism are high: they are primarily single-brooded, open nesters that lay small clutches on or near the ground. Edge habitats and forest openings attract cowbirds and predators. The edge species of birds, which are mostly permanent residents or short-distance migrants, are well adapted to survive and reproduce in small isolated woodlands without the benefit of special habitat management. The obligate forest interior species, on the other hand, are decreasing in those parts of North America where extensive forests are being replaced by isolated woodlands. If we are to preserve ecosystems intact for the benefit of future generations, and maintain a viable gene pool for the scarcer species, we must think in terms of retaining large, unbroken tracts of forest and of limiting disturbance in the more remote portions of these tracts.

Book chapter↗

The study of relatedness and genetic diversity in cranes

The U.S. Fish and Wildlife Service (Service) is responsible for recovery of endangered species in the wild and, when necessary, maintenance in captivity. These programs provide an immediate measure of insurance against extinction. A prerequisite inherent in all of these programs is the preservation of enough genetic diversity to maintain a viable population and to maintain the capacity of the population to respond to change. Measures of genetic diversity examine polymorphic genes that are not influenced by selection pressures. Examples of these techniques and those used to determine relatedness are discussed. Studies of genetic diversity, electrophoresis of blood proteins, relatedness, blood typing, and restriction fragment length polymorphisms which are being used by the Patuxent Wildlife Research Center are discussed in detail.

Book chapter↗

Ecology, behavior, and conservation of the Poo-uli (Melamprosops phaeosoma)

Studies of the population density, habitat structure, foraging behavior, and activity budgets of the Poo-uli (Melamprosops phaeosoma) were conducted intermittently between 1973 and 1985 in a 50-ha study area in the upper Hanawi watershed, island of Maui, Hawaii. Poo-uli have apparently declined in density on this site by 80% from 1975 to 1981 and by 90% from 1975 to 1985. During this period, pig activity, as indexed by ground cover disturbance, increased 473%. Compared to values in the range of the Poo-uli, pig activity was 9-24 times greater in two adjacent out-of-range areas. Poo-uli most frequently foraged from 4-7 m height on ohia (Metrosideros polymorpha), olapa (Cheirodendron trigynum), ohelo (Vaccinium calycinum), and kanawao (Broussaisia arguta) in decreasing frequency; feeding on kanawao was significantly more frequent than random expectation. Chief food items were land snails and insects. Most prey were captured on branches from under moss, lichen, and bark by gleaning, probing, and pecking. Birds spent 48% of their daylight hours foraging and 30% quietly perching. Poo-uli frequently formed small mixed-species flocks, usually with Maui Creepers (Puroreomyza montana), that probably facilitated predator avoidance and foraging efficiency. The major limiting factors at present appear to be habitat modification from feral pigs (Sus scrofa), predation, avian disease, interspecific competition from the introduced garlic snail (Oxychilus alliarius), and possibly gene pool impoverishment. Control of pigs is recommended.

The Wilson Bulletin↗

Field guide to malformations of frogs and toads: with radiographic interpretations

In 1995, students found numerous malformed frogs on a field trip to a Minnesota pond. Since that time, reports of malformed frogs have increased dramatically. Malformed frogs have now been reported in 44 states in 38 species of frogs, and 19 species of toads. Estimates as high as 60% of the newly metamorphosed frog populations have had malformations at some ponds (NARCAM, ’99). The wide geographic distribution of malformed frogs and the variety of malformations are a concern to resource managers, research scientists and public health officials. The potential for malformations to serve as a signal of ecosystem disruption, and the affect this potential disruption might have on other organisms that share those ecosystems, has not been resolved. Malformations represent an error that occurred early in development. The event that caused the developmental error is temporally distant from the malformation we see in the fully developed animal. Knowledge of normal developmental principles is necessary to design thoughtful investigations that will define the events involved in abnormal development in wild frog populations. Development begins at the time an egg is fertilized and progresses by chemical communication between cells and cell layers. This communication is programmed through gene expression. Malformations represent primary errors in development, errors in chemical communication or translation of genetic information. Deformations arise later in development and usually result from the influence of mechanical factors (such as amputation) that alter shape or anatomy of a structure that has developed normally. The occurrence and the type of malformations are influenced by the type of error or insult as well as the timing of the error (the developmental stage at which the error occurred). The appearance of the malformation can therefore provide clues that suggest when the error may have occurred. If the malformation is an incomplete organ, such as an incomplete limb, the factor or insult acted during a susceptible period prior to organ completion. Although defining the anatomy of the malformed metamorphosed frog can give us an idea of the approximate window during which the developmental insult was initiated, and might even suggest the type of insult that may have occurred, the morphology of the malformation does not define the cause. To define causes and mechanisms of frog malformations we need to use well designed investigations that are different from traditional tests used in acute toxicity or disease pathogenicity studies. When investigating malformations in metamorphosed frogs, we are looking at the affect of exposure to an agent that occurred early in tadpole development. Therefore investigations to determine causes of malformations need to look at agents that are present in the tadpoles or their environments at these early developmental times. Laboratory experiments need to expose embryos and tadpoles to suspect agents at appropriate developmental stages and look at acute results, such as toxicity and death, as well as following the developmental process to completion to determine the impact of the agent on the developing tadpole and the fully developed frog. This means holding animals past metamorphic climax to assure that the anatomy and physiology of the adult have developed normally. As we look at field collections of abnormal frogs, we need to keep in mind that these collections reflect survivors only. We are looking at malformations that were not fatal to tadpoles. We cannot assume that because we do not collect other malformations, they did not exist. More work needs to be done on the developing tadpole, in the field and in the laboratory, to better elucidate the range, frequency, character and causes of anuran malformations.

Biological Science Report↗

Molecular phylogeny of the spoonbills (Aves: Threskiornithidae) based on mitochondrial DNA

Spoonbills (genus Platalea ) are a small group of wading birds, generally considered to constitute the subfamily Plataleinae (Aves: Threskiornithidae). We reconstructed phylogenetic relationships among the six species of spoonbills using variation in sequences of the mitochondrial genes ND2 and cytochrome b (total 1796 bp). Topologies of phylogenetic trees reconstructed using maximum likelihood, maximum parsimony, and Bayesian analyses were virtually identical and supported monophyly of the spoonbills. Most relationships within Platalea received strong support: P. minor and P. regia were closely related sister species, P. leucorodia was sister to the minor-regia clade, and P. alba was sister to the minor-regia-leucorodia clade. Relationships of P. flavipes and P. ajaja were less well resolved: these species either formed a clade that was sister to the four-species clade, or were successive sisters to this clade. This phylogeny is consistent with ideas of relatedness derived from spoonbill morphology. Our limited sampling of the Threskiornithinae (ibises), the putative sister group to the spoonbills, indicated that this group is paraphyletic, in agreement with previous molecular data; this suggests that separation of the Threskiornithidae into subfamilies Plataleinae and Threskiornithinae may not be warranted.

Zootaxa↗

Paraphyly of Cinclodes fuscus (Aves: Passeriformes: Furnariidae): Implications for taxonomy and biogeography

The Andes are a hotspot of global avian diversity, but studies on the historical diversification of Andean birds remain relatively scarce. Evolutionary studies on avian lineages with Andean&ndash;Patagonian distributions have focused on reconstructing species-level phylogenies, whereas no detailed phylogeographic studies on widespread species have been conducted. Here, we describe phylogeographic patterns in the Bar-winged Cinclodes ( Cinclodes fuscus ), a widespread and common species of ovenbird (Furnariidae) that breeds from Tierra del Fuego to the northern Andes. Traditionally, C. fuscus has been considered a single species composed of nine subspecies, but its long and narrow range suggests the possibility of considerable genetic variation among populations. Sequences of two mitochondrial genes revealed three discrete and geographically coherent groups of C. fuscus , occupying the southern, central, and northern Andes. Surprisingly, phylogenetic analyses indicated that these groups were more closely related to other species of Cinclodes than to each other. Relationships of the southern and northern C. fuscus clades to other species of Cinclodes were straightforward; in combination with available information on plumage, behavioral, and vocal variation, this suggests that each should be recognized as a distinct biological species. The central Andean group was paraphyletic with respect to C. oustaleti , and relationships among these taxa and C. olrogi were poorly resolved. We suggest that the central Andean C. fuscus should also be considered a different species, pending new information to clarify species limits in this group. These new phylogenetic data, along with recently developed methods, allowed us to review the biogeography of the genus, confirming southern South America and the central Andes as important areas for the diversification of these birds.

Molecular Phylogenetics and Evolution↗

Anaerobic oxidation of arsenite by autotrophic bacteria: The view from Mono Lake, California

Introduction The phenomenon of arsenite [As(III)] oxidation by aerobic bacteria was first reported by Green (1918), and the many subsequent discoveries made in this realm, most occurring over the past three decades, are the primary focus of this book. In contrast, the fact that select anaerobes can also achieve this feat was an entirely serendipitous discovery. As often occurs in science, the intended path leading towards a stated goal can take an unexpected turn, ultimately leading to greater rewards than those originally anticipated. The intellectual freedom to meander such a path of curiosity-driven research is a great gift especially when one arrives at an unexpected revelation. It is perhaps the most rewarding aspect of a scientist's career. Such was the case when we first uncovered the phenomenon of anaerobic As(III) oxidation. Our arsenic-related field work focused on Mono Lake, California because of its exceptionally high levels of dissolved inorganic arsenic (~200 &mu;M), and the fact that we had previously isolated two novel species of arsenate [As(V)]-respiring bacteria, Bacillus arseniciselenatis and B. selenitireducens from its bottom sediments(Switzer Blum et al. , 1998). Radiotracer investigations employing 73 As(V) measured high As(V) reductase activity in the anoxic water column of the lake, yielding an estimate that this electron sink could mineralize approximately 8-14% of annual phytoplankton productivity (Oremland et al. , 2000), a value confirmed independently on the basis of mass balance considerations (Hollibaugh et al. , 2005). In both studies both groups also used cultivation-based methods (Most-Probable-Numbers) to estimate the densities of As(V)-respiring bacteria in the anoxic water column, and arrived at similar low but detectable values (e.g. 10 2 -10 3 ml -1 ). The next goal was to determine what taxa of As(V)-respiring prokaryotes were involved in these water-column transformations, using culture-independent analyses (Denaturing Gradient Gel Electrophoresis) of As(V)-amended anoxic bottom water. We had expected to find 16S rRNA gene amplicon sequences similar to those from the bacilli we isolated from the sediments, but instead found a few rather unremarkable amplicons in the Epsilon, Gamma and Delta proteobacteria; yet these incubations showed a complete reduction of the added As(V), caused by sulfide-linked oxidation by resident chemoautotrophs of the Delta-proteobacteria (Hoeft et al. , 2004; Hollibaugh et al. , 2006). This As(V) reductase activity was inhibited by nitrate, while addition of As(III) to nitrate-amended waters resulted in the formation of As(V). This observation led us to conclude that there was anaerobic biological oxidation of As(III) to As(V), linked to the provided nitrate ions (Hoeft et al. , 2002).

California↗

Efficacy of commercial canarypox vaccine for protecting Hawai'i 'Amakihi from field isolates of Avipoxvirus

At least three variants of avian pox virus are present in Hawai‘i - Fowlpox from domestic poultry and a group of genetically distinct viruses that cluster within two clades (Pox Variant 1 and Pox Variant 2) that are most similar to Canarypox based on DNA sequence of the virus 4b core protein gene. We tested whether Hawai‘i ‘Amakihi can be protected from wild virus isolates with an attenuated live Canarypox vaccine that is closely related to isolates that cluster within clade 1 (Pox Variant 1) based on sequence of the attenuated Canarypox virus 4b core protein. Thirty-one (31) Hawai`i ‘Amakihi ( Hemignathus virens ) with no prior physical evidence of pox infection were collected on Mauna Kea from xeric, high elevation habitats with low pox prevalence and randomly divided into two groups. One group of 16 was vaccinated with Poximmune C&reg; while the other group received a sham vaccination with virus diluent. Four of 15 (27%) vaccinated birds developed potentially life-threatening disseminated lesions or lesions of unusually long duration, while one bird never developed a vaccine-associated lesion or "take". After vaccine-associated lesions healed, vaccinated birds were randomly divided into three groups of five and challenged with either a wild isolate of Fowlpox, a Hawai`i `Amakihi isolate of a Canarypox-like virus from clade 1 (Pox Variant 1) or a Hawai`i `Amakihi isolate of a Canarypox-like virus from clade 2 (Pox Variant 2). Similarly, three random groups of five unvaccinated ‘Amakihi were challenged with the same virus isolates. Vaccinated and unvaccinated ‘Amakihi challenged with Fowlpox had transient infections with no clinical signs of infection. Mortality in vaccinated ‘Amakihi that were challenged with Pox Variant 1 and Pox Variant 2 ranged from 0% (0/5) for Pox Variant 1 to 60% (3/5) for Pox Variant 2. Mortality in unvaccinated ‘Amakihi ranged from 40% (2/5) for Pox Variant 1 to 100% (5/5) for Pox Variant 2. While the vaccine provided some protection against Pox Variant 1, serious side effects and low efficacy against Pox Variant 2 make it risky to use in captive or wild honeycreepers.

Hawai'i↗

Mitochondrial DNA variability among Lake Baikal omul Coregonus autumnalis migratorius (Georgi)

Omul, Coregonus autumnalis, are a commercially important coregonine fish from Lake Baikal, Siberia, Russia. In Lake Baikal, three morphotypes recognized by fishery experts occupy different zones in the lake: they are referred to as "littoral," "pelagic," and "benthic". Expressed character divergence was supported by whole-body morphometric analysis, but it is not known whether discrete genetic differences accompany the observed morphological variation. This study was designed to assess the genetic variation of three different omul morphotypes sampled from different locations in Lake Baikal that were segregated by morphotype in multivariate analysis. We surveyed genetic variation with restriction fragment length polymorphism analysis of specific gene loci amplified with the polymerase chain reaction. Sequence variation was localized in the mitochondrial control region. Though no discrete genetic markers were found, there is evidence of reproductive segregation by geographic location that corroborates geographic variation in morphological characters.

Advances in Limnology↗