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USGS1995

Effects of fire on threatened and endangered plants: an annotated bibliography

This bibliography presents basic information about the effects of fm on plants that the U.S. Fish and Wildlife Service lists as endangered or threatened or as category-one (Cl) candidates for federal listing. We searched 23 databases for publications, unpublished reports, and records with pertinent information; summarized and compiled information on the effects of fire from all final rulings on endangered and threatened plants and from endangered species recovery plans for plants; and solicited information from key researchers and agencies involved in fire ecology. The bibliography includes 126 references to the effect of fire on 172 federally listed plant species, or on 26% of the total number of federally listed plant species in these categories. Our study revealed that the total number of relevant articles has been increasing since the 1970s and more rapidly since the 1980s. Although research on fire and rare plants is increasing, an absence of information on many species persists. We hope that this document will facilitate and encourage research in this increasingly important field of botanical conservation.

Information and Technology Report↗

USGS1960

The trumpeter swan: its history, habits, and population in the U.S

This report on the trumpeter evolved from studies made from 1948 to 1957 when I served first as an assistant and later as manager, of the Red Rock Lakes Refuge. I have also drawn extensively on the records of the National Park Service, the U. S. Fish and Wildlife Service, and the National Museum in Washington, D. C. Other pertinent information bearing on the life history of the trumpeter swan in the United States has been extracted from published articles, unpublished reports and records, firsthand accounts and correspondence. This account includes a historical record of this bird in the United States and Alaska, an outline of its habits and characteristics in its native Rocky Mountain environment, and furnishes information necessary to guide its future.

North American Fauna↗

USGS1977

A bibliography of references to avian botulism

This bibliography, first compiled in 1970 in response to many requests for information on avian botulism, has been updated to include the literature published through 1975. In general, only articles dealing primarily with the avian disease are included, as opposed to those concerned with various aspects of the biology of Clostridium botulinum , either type C or type E. A few exceptions, such as Bengton’s report of the first isolation and description of the type C organism, are included for their historical interest. Progress reports and other administrative documents not available for distribution or request are excluded, as are textbook accounts, which are generally summaries of work published elsewhere. Although Mr. Allen and Mrs. Wilson have attempted to list every important reference, they make no claim to complete coverage of the published literature. The authors will be grateful to users of the bibliography who call attention to errors or omissions.

Special Scientific Report - Wildlife↗

USGS1982

Bibliography of references to avian botulism: Update

This bibliography, first compiled in 1970 (Allen and Wilson 1977) and published in 1977 in response to many requests for information on avian botulism, has been updated to include the literature published through 1980. In general, only articles dealing primarily with the avian disease are included, as opposed to those concerned with the various aspects of the biology of Clostridium botulinum , either type C or E. A few exceptions, such as Bengtson's report of the first isolation and description of the type C organism, are included for their historical interest. Progress reports and other administrative documents not available for distribution on request are excluded, as are most textbook accounts, which are generally summaries of work published elsewhere. This bibliography was a cooperative effort by the National Wildlife Health Laboratory, U.S. Fish and Wildlife Service, and the U.S. National Park Service. The National Park Service provided partial funding for the work through Contract No. 89100-0491. Although the authors attempted to list every important reference, they make no claim to complete coverage of the published literature. The authors will be grateful to users of the bibliography who call attention to errors or omissions. Wayne I. Jensen (Retired) Milton Friend, Director, National Wildlife Health Laboratory

Special Scientific Report - Wildlife↗

USGS2000

Hydrologic and geologic characteristics of the Yucca Mountain site relevant to the performance of a potential repository

Yucca Mountain, located ~100 mi northwest of Las Vegas, Nevada, has been designated by Congress as a site to be characterized for a potential mined geologic repository for high-level radioactive waste. This field trip will examine the regional geologic and hydrologic setting for Yucca Mountain, as well as specific results of the site characterization program. The first day focuses on the regional setting with emphasis on current and paleo hydrology, which are both of critical concern for predicting future performance of a potential repository. Morning stops will be southern Nevada and afternoon stops will be in Death Valley. The second day will be spent at Yucca Mountain. The field trip will visit the underground testing sites in the "Exploratory Studies Facility" and the "Busted Butte Unsaturated Zone Transport Field Test" plus several surface-based testing sites. Much of the work at the site has concentrated on studies of the unsaturated zone, an element of the hydrologic system that historically has received little attention. Discussions during the second day will compromise selected topics of Yucca Mountain geology, hydrology and geochemistry and will include the probabilistic volcanic hazard analysis and the seismicity and seismic hazard in the Yucca Mountain area. Evening discussions will address modeling of regional groundwater flow, the results of recent hydrologic studies by the Nye County Nuclear Waste Program Office, and the relationship of the geology and hydrology of Yucca Mountain to the performance of a potential repository. Day 3 will examine the geologic framework and hydrology of the Pahute Mesa-Oasis Valley Groundwater Basin and then will continue to Reno via Hawthorne, Nevada and the Walker Lake area.

Nevada↗

USGS2014

Experimental West Nile virus infection in Eastern Screech Owls (Megascops asio)

This study evaluated the potential effects of different concentrations of bleached/unbleached kraft mill effluent (B/UKME) on several reproductive endpoints in adult largemouth bass ( Micropterus salmoides ). The kraft mill studied produces a 50/50 mix of bleached/unbleached market pulp with an estimated release of 36 million gal of effluent/day. Bleaching sequences were C 90 d 10 EopHDp and CEHD for softwood (pines) and hardwoods (mainly tupelo, gums, magnolia, and water oaks), respectively. Bass were exposed to different effluent concentrations (0 [controls, exposed to well water], 10, 20, 40, or 80%) for either 28 or 56 days. At the end of each exposure period, fish were euthanized, gonads collected for histological evaluation and determination of gonadosomatic index (GSI), and plasma was analyzed for 17β-estradiol, 11-ketotestosterone, and vitellogenin (VTG). Largemouth bass exposed to B/UKME responded with changes at the biochemical level (decline in sex steroids in both sexes and VTG in females) that were usually translated into tissue/organ-level responses (declines in GSI in both sexes and in ovarian development in females). Although most of these responses occurred after exposing fish to 40% B/UKME concentrations or greater, some were observed after exposures to 20% B/UKME. These threshold concentrations fall within the 60% average yearly concentration of effluent that exists in the stream near the point of discharge (Rice Creek), but are above the <10% effluent concentration present in the St. Johns River. The chemical(s) responsible for such changes as well as their mode(s) of action remain unknown at this time.

Florida↗

USGS2011

Gas shale/oil shale

The production of natural gas from shales continues to increase in North America, and shale gas exploration is on the rise in other parts of the world since the previous report by this committee was published by American Association of Petroleum Geologists, Energy Minerals Division (2009). For the United States, the volume of proved reserves of natural gas increased 11% from 2008 to 2009, the increase driven largely by shale gas development (Energy Information Administration 2010c). Furthermore, shales have increasingly become targets of exploration for oil and condensate as well as gas, which has served to greatly expand their significance as ‘‘unconventional’’ petroleum reservoirs. This report provides information about specific shales across North America and Europe from which gas (biogenic or thermogenic), oil, or natural gas liquids are produced or is actively being explored. The intent is to reflect the recently expanded mission of the Energy Minerals Division (EMD) Gas Shales Committee to serve as a single point of access to technical information on shales regardless of the type of hydrocarbon produced from them. The contents of this report were drawn largely from contributions by numerous members of the EMD Gas Shales Advisory Committee, with much of the data being available from public websites such as state or provincial geological surveys or other public institutions. Shales from which gas or oil is being produced in the United States are listed in alphabetical order by shale name. Information for Canada is presented by province, whereas for Europe, it is presented by country.

Natural Resources Research↗

USGS1984

Proper expression of metabolizable energy in avian energetics

We review metabolizable energy (ME) concepts and present evidence suggesting that the form of ME used for analyses of avian energetics can affect interpretation of results. Apparent ME (AME) is the most widely used measure of food energy available to birds. True ME(TME) differs from AME in recognizing fecal and urinary energy of nonfood origin as metabolized energy. Only AME values obtained from test birds fed at maintenance levels should be used for energy analyses. A practical assay for TME has shown that TME estimates are less sensitive than AME to variation in food intake. The TME assay may be particularly useful in studies of natural foods that are difficult to obtain in quantities large enough to supply test birds with maintenance requirements. Energy budgets calculated from existence metabolism should be expressed as kJ of AME and converted to food requirements with estimates of metabolizability given in kJ AME/g.

Condor↗

USGS2019

Windows to the deep 2018: Exploration of the southeast US Continental margin

Windows to the Deep 2018: Exploration of the Southeast US Continental Margin was a 36-day expedition aboard NOAA Ship Okeanos Explorer to acquire data on priority exploration areas identified by the ocean management and scientific communities. This expedition involved high-resolution multibeam sonar mapping and ROV dives, ranging from 340 m to 3,400 m depth, across the southeast US continental margin. Operations primarily targeted areas with potential to host deep-sea coral and sponge communities, including mounds, ridges, and terraced features on the continental slope. Dive sites also included maritime heritage sites, a submarine landslide feature, and several submarine canyon slopes, some of which exhibited evidence of active cold seeps. High biological abundance was noted at six of 17 dive sites, three of which also had high biological diversity. Additionally, deep-sea corals or sponges were observed on every dive except one, which was dedicated to gas seep exploration.

Atlantic Ocean, Blake Plateau, Stetson Mesa↗

USGS2000

Rapid activation of gill Na+, K+-ATPase the euryhaline teleost Fundulus heteroclitus

The rapid activation of gill Na + ,K + -ATPase was analyzed in the mummichog ( Fundulus heteroclitus ) and Atlantic salmon ( Salmo salar ) transferred from low salinity (0.1 ppt) to high salinity (25–35 ppt). In parr and presmolt, Salmo salar gill Na + ,K + -ATPase activity started to increase 3 days after transfer. Exposure of Fundulus heteroclitus to 35 ppt seawater (SW) induced a rise in gill Na + ,K + -ATPase activity 3 hr after transfer. After 12 hr, the values dropped to initial levels but showed a second significant increase 3 days after transfer. The absence of detergent in the enzyme assay resulted in lower values of gill Na + ,K + -ATPase, and the rapid increase after transfer to SW was not observed. Na + ,K + -ATPase activity of gill filaments in vitro for 3 hr increased proportionally to the osmolality of the culture medium (600 mosm/kg > 500 mosm/kg > 300 mosm/kg). Osmolality of 800 mosm/kg resulted in lower gill Na + ,K + -ATPase activity relative to 600 mosm/kg. Increasing medium osmolality to 600 mosm/kg with mannitol also increased gill Na + ,K + -ATPase. Cycloheximide inhibited the increase in gill Na + ,K + -ATPase activity observed in hyperosmotic medium in a dose-dependent manner (10 –4 M > 10 –5 M > 10 –6 M). Actinomycin D or bumetanide in the culture (doses of 10 –4 M, 10 –5 M, and 10 –6 M) did not affect gill Na + ,K + -ATPase. Injection of fish with actinomycin D prior to gill organ culture, however, prevented the increase in gill Na + ,K + -ATPase activity in hyperosmotic media. The results show a very rapid and transitory increase in gill Na + ,K + -ATPase activity in the first hours after the transfer of Fundulus heteroclitus to SW that is dependent on translational and transcriptional processes.

Journal of Experimental Zoology↗

USGS2018

Modelling effects of invasive species and drought on crayfish extinction risk and population dynamics

Hydrological alteration, which may be exacerbated by climate change, is known to facilitate aquatic species invasion. Altered hydrology, invasive species, and the additive effects of these stressors pose a threat to aquatic biodiversity. Understanding extinction risk in the context of these stressors is crucial for prioritizing conservation efforts. As case studies, three narrow‐ranged endemic crayfish species of conservation concern ( Faxonius marchandi , Faxonius roberti , and Cambarus hubbsi ) in the Ozark Highlands of Arkansas and Missouri, USA, were used to examine the effects of invasive species and drought on crayfish population dynamics. The objectives of this study were to model the population dynamics of these imperilled species, assess how these populations may be affected under increased invasion effects and intensified drought, determine potential refuge effects, and examine the sensitivity of quasi‐extinction to model parameters. ramas‐metapop was used to construct stage‐based demographic models. Terminal extinction risk, median time to quasi‐extinction, and metapopulation occupancy were used to assess population viability under different scenarios. Cambarus hubbsi appears to be highly susceptible to decline if survival rates are reduced by simulated drought, as they have low reproductive potential and mature slowly. Models indicated that potential refuges allow F. roberti and C. hubbsi to persist, even when invasion and drought effects were extreme. Conversely, barriers to dispersal for F. marchandi led to reduced quasi‐extinction times and the greatest extinction risk under most invasion scenarios. Quasi‐extinction was most sensitive to changes in juvenile survival for all species examined, which indicates that improved estimates of stage‐specific demographic parameters for crayfish will improve model predictions. An increased understanding of the mechanisms of displacement of native crayfish by invasive crayfish is needed for most crayfish species. Limiting the spread of invasive species, maintaining natural habitat and hydrological regimes, and gaining insight into life histories and demographic parameters will increase the ability to conserve endemic and imperilled crayfish.

Arkansas, Missouri↗

USGS2025

Clarifying the trophic state concept to advance macroscale freshwater science and management

For over a century, ecologists have used the concept of trophic state (TS) to characterize an aquatic ecosystem's biological productivity. However, multiple TS classification schemes, each relying on a variety of measurable parameters as proxies for productivity, have emerged to meet use-specific needs. Frequently, chlorophyll a, phosphorus, and Secchi depth are used to classify TS based on autotrophic production, whereas phosphorus, dissolved organic carbon, and true color are used to classify TS based on both autotrophic and heterotrophic production. Both classification approaches aim to characterize an ecosystem's function broadly, but with varying degrees of autotrophic and heterotrophic processes considered in those characterizations. Moreover, differing classification schemes can create inconsistent interpretations of ecosystem integrity. For example, the US Clean Water Act focuses exclusively on algal threats to water quality, framed in terms of eutrophication in response to nutrient loading. This usage lacks information about non-algal threats to water quality, such as dystrophication in response to dissolved organic carbon loading. Consequently, the TS classification schemes used to identify eutrophication and dystrophication may refer to ecosystems similarly (e.g., oligotrophic and eutrophic), yet these categories are derived from different proxies. These inconsistencies in TS classification schemes may be compounded when interdisciplinary projects employ varied TS frameworks. Even with these shortcomings, TS can still be used to distill information on complex aquatic ecosystem function into a set of generalizable expectations. The usefulness of distilling complex information into a TS index is substantial such that usage inconsistencies should be explicitly addressed and resolved. To emphasize the consequences of diverging TS classification schemes, we present three case studies for which an improved understanding of the TS concept advances freshwater research, management efforts, and interdisciplinary collaboration. To increase clarity in TS, the aquatic sciences could benefit from including information about the proxy variables, ecosystem type, as well as the spatiotemporal domains used to classify TS. As the field of aquatic sciences expands and climatic irregularity increases, we highlight the importance of re-evaluating fundamental concepts, such as TS, to ensure their compatibility with evolving science.

Ecosphere↗

USGS2005

Dating floodplain sediments using tree-ring response to burial

Floodplain sediments can be dated precisely based on the change in anatomy of tree rings upon burial. When a stem of tamarisk (Tamarix ramosissima) or sandbar willow (Salix exigua) is buried, subsequent annual rings in the buried section resemble the rings of roots: rings become narrower, vessels within the rings become larger, and transitions between rings become less distinct. We combined observations of these changes with tree-ring counts to determine the year of deposition of sedimentary beds exposed in a 150-m-long trench across the floodplain of the Rio Puerco, a rapidly filling arroyo in New Mexico. This method reliably dated most beds thicker than about 30 cm to within a year of deposition. Floodplain aggradation rates varied dramatically through time and space. Sediment deposition was mostly limited to brief overbank flows occurring every few years. The most rapid deposition occurred on channel-margin levees, which migrated laterally during channel narrowing. At the decadal timescale, the cross-section-average sediment deposition rate was steady, but there was a shift in the spatial pattern of deposition in the 1980s. From 1936 to 1986, sediment deposition occurred by channel narrowing, with little change in elevation of the thalweg. After 1986 sediment deposition occurred by vertical aggradation. From 1936 to 2000 about 27 per cent of the arroyo cross-section filled with sediment. The rate of filling from 1962 to 2000 was 0-8 vertical m/decade or 85 m2/decade. Published in 2005 by John Wiley & Sons, Ltd.

Earth Surface Processes and Landforms↗

USGS2011

Bedform response to flow variability

Laboratory observations and computational results for the response of bedform fields to rapid variations in discharge are compared and discussed. The simple case considered here begins with a relatively low discharge over a flat bed on which bedforms are initiated, followed by a short high-flow period with double the original discharge, during which the morphology of the bedforms adjusts, followed in turn by a relatively long period of the original low discharge. For the grain size and hydraulic conditions selected, the Froude number remains subcritical during the experiment, and sediment moves predominantly as bedload. Observations show rapid development of quasi-two-dimensional bedforms during the initial period of low flow with increasing wavelength and height over the initial low-flow period. When the flow increases, the bedforms rapidly increase in wavelength and height, as expected from other empirical results. When the flow decreases back to the original discharge, the height of the bedforms quickly decreases in response, but the wavelength decreases much more slowly. Computational results using an unsteady two-dimensional flow model coupled to a disequilibrium bedload transport model for the same conditions simulate the formation and initial growth of the bedforms fairly accurately and also predict an increase in dimensions during the high-flow period. However, the computational model predicts a much slower rate of wavelength increase, and also performs less accurately during the final low-flow period, where the wavelength remains essentially constant, rather than decreasing. In addition, the numerical results show less variability in bedform wavelength and height than the measured values; the bedform shape is also somewhat different. Based on observations, these discrepancies may result from the simplified model for sediment particle step lengths used in the computational approach. Experiments show that the particle step length varies spatially and temporally over the bedforms during the evolution process. Assuming a constant value for the step length neglects the role of flow alterations in the bedload sediment-transport process, which appears to result in predicted bedform wavelength changes smaller than those observed. However, observations also suggest that three-dimensional effects play at least some role in the decrease of bedform wavelength, so incorporating better models for particle hop lengths alone may not be sufficient to improve model predictions.

Earth Surface Processes and Landforms↗

USGS1983

Ground-water contamination by organic bases derived from coal-tar wastes

A fluid sample from a shallow aquifer contaminated by coal-tar wastes was analyzed for organic bases. The sample consisted of a mixture of aqueous and oily-tar phases. The phases were separated by centrifugation and filtration. Organic bases were isolated from each phase by pH adjustment and solvent extraction. Organic bases in the oily-tar phase were further purified by neutral-alumina, micro-column adsorption chromatography. Separation and identification of the organic bases in each phase were achieved by using capillary gas chromatography-mass spectrometry-computer (GC-MS-COM) and probe distillation-high resolution mass spectrometry (PD-HRMS) techniques. Organic bases present in the aqueous phase included primary aromatic amines (such as aniline, alkylated anilines, and naphthylamines) as well as azaarenes (such as alkylated pyridines, quinolines, acridine, and benzoquinolines). The oily-tar phase contained acridine, benzacridines, dibenzacridines, and numerous other azaarenes, the elemental compositions of which were determined by PD-HRMS. Azaarenes in the oily-tar phase, varying in size from 6 to 12 rings, are reported for the first time. The origin and environmental significance of these compounds are discussed.

Environmental Toxicology and Chemistry↗

USGS2011

Simulation of branched serial first-order decay of atrazine and metabolites in adapted and nonadapted soils

In the present study a branched serial first-order decay (BSFOD) model is presented and used to derive transformation rates describing the decay of a common herbicide, atrazine, and its metabolites observed in unsaturated soils adapted to previous atrazine applications and in soils with no history of atrazine applications. Calibration of BSFOD models for soils throughout the country can reduce the uncertainty, relative to that of traditional models, in predicting the fate and transport of pesticides and their metabolites and thus support improved agricultural management schemes for reducing threats to the environment. Results from application of the BSFOD model to better understand the degradation of atrazine supports two previously reported conclusions: atrazine (6-chloro- N -ethyl- N ′-(1-methylethyl)-1,3,5-triazine-2,4-diamine) and its primary metabolites are less persistent in adapted soils than in nonadapted soils; and hydroxyatrazine was the dominant primary metabolite in most of the soils tested. In addition, a method to simulate BSFOD in a one-dimensional solute-transport unsaturated zone model is also presented.

Environmental Toxicology and Chemistry↗

USGS2011

Evaluation of influence of sediment on the sensitivity of a unionid mussel ( Lamsilis silquoidea ) to ammonia in 28-day water exposures

A draft update of the U.S. Environmental Protection Agency ambient water quality criteria (AWQC) for ammonia substantially lowers the ammonia AWQC, primarily due to the inclusion of toxicity data for freshwater mussels. However, most of the mussel data used in the updated AWQC were generated from water-only exposures and limited information is available on the potential influence of the presence of a substrate on the response of mussels in laboratory toxicity tests. Our recent study demonstrated that the acute sensitivity of mussels to ammonia was not influenced by the presence of substrate in 4-d laboratory toxicity tests. The objective of the current study was to determine the sensitivity of mussels to ammonia in chronic 28-d water exposures with the sediment present (sediment treatment) or absent (water-only treatment). The chronic toxicity test was conducted starting with two-month-old juvenile mussels (fatmucket, Lampsilis siliquoidea ) in a flow-through diluter system, which maintained consistent pH (≈8.3) and six concentrations of total ammonia nitrogen (N) in overlying water and in sediment pore water. The chronic value (ChV, geometric mean of the no-observed-effect concentration and the lowest-observed-effect concentration) was 0.36 mg N/L for survival or biomass in the water-only treatment, and was 0.66 mg N/L for survival and 0.20 mg N/L for biomass in the sediment treatment. The 20% effect concentration (EC20) for survival was 0.63 mg N/L in the water-only treatment and was 0.86 mg N/L in the sediment treatment (with overlapping 95% confidence intervals; no EC20 for biomass was estimated because the data did not meet the conditions for any logistic regression analysis). The similar ChVs or EC20s between the water-only treatment and the sediment treatment indicate that the presence of sediment did not substantially influence the sensitivity of juvenile mussels to ammonia in the 28-d chronic laboratory water exposures.

Environmental Toxicology and Chemistry↗

USGS2001

Chemical and isotopic evidence of nitrogen transformation in the Mississippi River, 1997-98

Nitrate (NO 3 ) and other nutrients discharged by the Mississippi River are suspected of causing a zone of depleted dissolved oxygen (hypoxic zone) in the Gulf of Mexico each summer. The hypoxic zone may have an adverse affect on aquatic life and commercial fisheries. The amount of NO 3 delivered by the Mississippi River to the Gulf of Mexico is well documented, but the relative contributions of different sources of NO 3 , and the magnitude of subsequent in-stream transformations of NO 3 , are not well understood. Forty-two water samples collected in 1997 and 1998 at eight stations located either on the Mississippi River or its major tributaries were analysed for NO 3 , total nitrogen (N), atrazine, chloride concentrations and NO 3 stable isotopes (δ 15 N and δ 18 O). These data are used to assess the magnitude and nature of in-stream N transformation and to determine if the δ 15 N and δ 18 O of NO 3 provide information about NO 3 sources and transformation processes in a large river system (drainage area 2 900 000 km 2 ) that would otherwise be unavailable using concentration and discharge data alone. Results from 42 samples indicate that the δ 15 N and δ 18 O ratios between sites on the Mississippi River and its tributaries are somewhat distinctive, and vary with season and discharge rate. Of particular interest are two nearly Lagrangian sample sets, in which samples from the Mississippi River at St Francisville, LA, are compared with samples collected from the Ohio River at Grand Chain, II, and the Mississippi River at Thebes, IL. In both Lagrangian sets, mass-balance calculations indicate only a small amount of in-stream N loss. The stable isotope data from the samples suggest that in-stream N assimilation and not denitrification accounts for most of the N loss in the lower Mississippi River during the spring and early summer months.

Illinois, Iowa, Kentucky, Louisiana, Mississippi, ↗