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WaterSMART-The Colorado River Basin focus-area study

Increasing demand for the limited water resources of the United States continues to put pressure on water-resource agencies to balance the competing needs of ecosystem health with municipal, agricultural, and recreational uses. In 2007, the U.S. Geological Survey (USGS) identified a National Water Census as one of six pivotal future science directions for the USGS in the following decade. The envisioned USGS National Water Census would evaluate large-scale effects of changes in land use and land cover, water use, and climate on water availability, water quality, and human and aquatic ecosystem health. The passage of the SECURE (Science and Engineering to Comprehensively Understand and Responsibly Enhance) Water Act in 2009 was a key step towards implementing the USGS National Water Census. Section 9508 of the Act authorizes a "national water availability and use assessment program" within the USGS (1) to provide a more accurate assessment of the status of the water resources of the United States; and (2) to develop the science for improved forecasts of the availability of water for future economic, energy production, and environmental uses. Initial funding for the USGS to begin working on the National Water Census came with the approval of the U.S. Department of the Interior's WaterSMART (Sustain and Manage America's Resources for Tomorrow) Initiative. The WaterSMART Initiative provides funding to the USGS, Bureau of Reclamation, and U.S. Department of Energy to achieve a sustainable water strategy to meet the Nation's water needs. WaterSMART funding also allowed the USGS to begin the national Water Availability and Use Assessment, as called for under the SECURE Water Act.

Arizona;Colorado;New Mexico;Utah

Understanding collaborative governance from a communication network perspective: A case study of the Atlantic Salmon recovery framework

Atlantic salmon populations in Maine remain critically low despite extensive hatchery supplementation and habitat improvement efforts. In 2000, the Gulf of Maine Distinct Population Segment was listed as Endangered under the ESA with joint listing authority shared by the National Oceanic and Atmospheric Administration (NOAA) and the United States Fish and Wildlife Service (USFWS). Because, regulators, and tribal, federal and state managers operate with independent authorities, recovery decisions depend upon effective communication and coordination among groups. Using a mixed-methods approach, we surveyed (n = 41) and interviewed (n = 28) members of the Atlantic Salmon Recovery Framework (ASRF), the joint governance structure responsible for Atlantic salmon management in Maine. We used survey results to examine the communication between members of ASRF through communication network analysis. While there is a relatively high network density for individual communication (56 %), connections are decentralized, a characteristic that can be incompatible with some organizational structures. Challenges reported by members fit into three general categories; i. slow and ineffective decision-making, ii. confusion surrounding leadership and accountability, and iii. low adaptive capacity. Despite these challenges, participants reported a commitment to maintaining a collaborative governance structure and a long history of inter-organizational relationships. This introspective effort has led to a reorganization effort to optimize communication pathways.

Maine

Best practices for distributing and deploying U.S. Geological Survey Shiny applications

A goal of U.S. Geological Survey (USGS) research is to create actionable science for U.S. Department of the Interior managers and partners. Properly managed and released software tools can quickly, accurately, and easily translate scientific results to aid managers’ decision-making. The USGS policies on software development and distribution affect how authors of USGS software products must navigate the review and approval process. Understanding these rules and procedures will save time and effort in making science useful and visible through software development. This document outlines USGS policies on software development as they pertain to Shiny applications, which use R code to create interactive web-based applications. The requirements and procedures described here will also be relevant for other USGS software applications. This document is not intended to be a step-by-step guide on building a Shiny application or to go into detail about any of the referenced software programs. An understanding of the referenced software programs, including R, Git, and hypertext markup language/cascading style sheets (HTML/CSS) is needed to use this document efficiently, though links for more thorough guidance are included throughout.

Techniques and Methods

A practical guide to understanding and validating complex models using data simulations

Biologists routinely fit novel and complex statistical models to push the limits of our understanding. Examples include, but are not limited to, flexible Bayesian approaches (e.g. BUGS, stan), frequentist and likelihood-based approaches (e.g. packages lme4 ) and machine learning methods. These software and programs afford the user greater control and flexibility in tailoring complex hierarchical models. However, this level of control and flexibility places a higher degree of responsibility on the user to evaluate the robustness of their statistical inference. To determine how often biologists are running model diagnostics on hierarchical models, we reviewed 50 recently published papers in 2021 in the journal Nature Ecology & Evolution , and we found that the majority of published papers did not report any validation of their hierarchical models, making it difficult for the reader to assess the robustness of their inference. This lack of reporting likely stems from a lack of standardized guidance for best practices and standard methods. Here, we provide a guide to understanding and validating complex models using data simulations. To determine how often biologists use data simulation techniques, we also reviewed 50 recently published papers in 2021 in the journal Methods Ecology & Evolution . We found that 78% of the papers that proposed a new estimation technique, package or model used simulations or generated data in some capacity (18 of 23 papers); but very few of those papers (5 of 23 papers) included either a demonstration that the code could recover realistic estimates for a dataset with known parameters or a demonstration of the statistical properties of the approach. To distil the variety of simulations techniques and their uses, we provide a taxonomy of simulation studies based on the intended inference. We also encourage authors to include a basic validation study whenever novel statistical models are used, which in general, is easy to implement. Simulating data helps a researcher gain a deeper understanding of the models and their assumptions and establish the reliability of their estimation approaches. Wider adoption of data simulations by biologists can improve statistical inference, reliability and open science practices.

Methods in Ecology and Evolution

Geology of the National Capital Region: Field trip guidebook

The 2004 Joint Northeast-Southeast Section Meeting of the Geological Society of America is the fourth such meeting and the third to be held in or near Washington, D.C. This guidebook and the field trips presented herein are intended to provide meeting participants, as well as other interested readers, a means to understand and enjoy the rich geological and historical legacy of the National Capital Region. The field trips cover all of the major physiographic and geologic provinces of the central Appalachians in the Mid-Atlantic region. Trip 1 outlines the tectonic history of northern Virginia along an east-to-west transect from the Coastal Plain province to the Blue Ridge province, whereas the other field trips each focus on a specific province. From west to east, these excursions investigate the paleoclimate controls on the stratigraphy of the Paleozoic rocks of the Allegheny Plateau and Valley and Ridge province in West Virginia, Pennsylvania, and Maryland (Trip 3); Eocene volcanic rocks that intrude Paleozoic rocks in the westernmost Valley and Ridge province in Virginia and West Virginia (Trip 4); age, petrology, and structure of Mesoproterozoic gneisses and granitoids located in the Blue Ridge province within and near Shenandoah National Park, Virginia (Trip 2); the use of argon data to unravel the complex structural and thermal history of the metamorphic rocks of the eastern Piedmont province in Maryland and Virginia (Trip 5); the use of cosmogenic isotopes to understand the timing of bedrock incision and formation of terraces along the Potomac River in the eastern Piedmont province near Great Falls, Virginia and Maryland (Trip 6); the nature of the boundary between rocks of the Goochland and Chopawamsic terranes in the eastern Piedmont of Virginia (Trip 7); the role of bluffs and fluvial terraces of the Coastal Plain in the Civil War Battle of Fredericksburg, Virginia (Trip 8); and the Tertiary lithology and paleontology of Coastal Plain strata around the Chesapeake Bay of Virginia and Maryland (Trip 9). Some of the field trips present new geochronological research that uses isotopic techniques to unravel Earth history and processes, including U-Pb dating to determine the timing of metamorphism and igneous activity associated with the Mesoproterozoic Grenville orogeny (Trip 2); argon (4DAr/39Ar) analysis to understand the complex Paleozoic history of deformation and metamorphism in the Piedmont (Trip 5); and cosmogenic beryllium-10 data to derive exposure ages of landforms and deposits of the Potomac River valley (Trip 6). Several trips shed insight on significant or enigmatic geologic features of the region. Trip 3 presents evidence for global paleoclimate controls on the Paleozoic stratigraphy of the Appalachian basin, including evidence for Late Devonian glacial deposits. Trip 4 investigates unusual Eocene igneous rocks in the Eastern United States, and Trip 2 visits several local ductile high-strain zones, offering geologists opportunities to consider the importance of such structures relative to the poorly understood Rockfish Valley fault zone in the Blue Ridge province. In the Piedmont province, Trip 7 focuses on a controversial terrane boundary, whereas Trip 5 crosses several lithologic belts with distinct thermotectonic histories that suggest terrane boundaries. Trip 6 sheds new light on the erosional history of a major river gorge cut into crystalline rocks in the Fall Zone. Four trips are recommended for Earth science teachers and are cosponsored by the National Association of Geologic Teachers (NAGT). These trips focus on the tectonic history of northern Virginia (Trip 1), terraces of the Potomac River at Great Falls and cosmogenic isotope analysis to date the terraces and the incision history (Trip 6), and Tertiary lithology and paleontology of the Chesapeake Bay region (Trip 9). Trip 8 takes advantage of the rich Civil War history of this region to look at the role that geology played in the strategies and outcome of the Battle of Fredericksburg. This guidebook is the result of much hard work by many individuals. The editors wish to thank the field trip leaders and authors, the technical reviewers, and Nancy Stamm of ths USGS Geologic Names Committee. We also owe a very special thanks to Linda Gundersen, Chief Scientist, Geologic Discipline, USGS, who provided funding for the guidebook.

Maryland, Virginia, Washington DC

Database of the United States Coal Pellet Collection of the U.S. Geological Survey Organic Petrology Laboratory

The Organic Petrology Laboratory (OPL) of the U.S. Geological Survey (USGS) Eastern Energy Resources Science Center in Reston, Virginia, contains several thousand processed coal sample materials that were loosely organized in laboratory drawers for the past several decades. The majority of these were prepared as 1-inch-diameter particulate coal pellets (more than 6,000 pellets; one sample usually was prepared as two pellets, although some samples were prepared in as many as four pellets), which were polished and used in reflected light petrographic studies. These samples represent the work of many scientists from the 1970s to the present, most notably Ron Stanton, who managed the OPL until 2001 (see Warwick and Ruppert, 2005, for a comprehensive bibliography of Ron Stanton's work). The purpose of the project described herein was to organize and catalog the U.S. part of the petrographic sample collection into a comprehensive database (available with this report as a Microsoft Excel file) and to compile and list published studies associated with the various sample sets. Through this work, the extent of the collection is publicly documented as a resource and sample library available to other scientists and researchers working in U.S. coal basins previously studied by organic petrologists affiliated with the USGS. Other researchers may obtain samples in the OPL collection on loan at the discretion of the USGS authors listed in this report and its associated Web page.

Open-File Report

High-resolution digital elevation model of Mount St. Helens crater and upper North Fork Toutle River basin, Washington, based on an airborne lidar survey of September 2009

The lateral blast, debris avalanche, and lahars of the May 18th, 1980, eruption of Mount St. Helens, Washington, dramatically altered the surrounding landscape. Lava domes were extruded during the subsequent eruptive periods of 1980–1986 and 2004–2008. More than three decades after the emplacement of the 1980 debris avalanche, high sediment production persists in the North Fork Toutle River basin, which drains the northern flank of the volcano. Because this sediment increases the risk of flooding to downstream communities on the Toutle and Cowlitz Rivers, the U.S. Army Corps of Engineers (USACE), under the direction of Congress to maintain an authorized level of flood protection, built a sediment retention structure on the North Fork Toutle River in 1989 to help reduce this risk and to prevent sediment from clogging the shipping channel of the Columbia River. From September 16–20, 2009, Watershed Sciences, Inc., under contract to USACE, collected high-precision airborne lidar (light detection and ranging) data that cover 214 square kilometers (83 square miles) of Mount St. Helens and the upper North Fork Toutle River basin from the sediment retention structure to the volcano's crater. These data provide a digital dataset of the ground surface, including beneath forest cover. Such remotely sensed data can be used to develop sediment budgets and models of sediment erosion, transport, and deposition. The U.S. Geological Survey (USGS) used these lidar data to develop digital elevation models (DEMs) of the study area. DEMs are fundamental to monitoring natural hazards and studying volcanic landforms, fluvial and glacial geomorphology, and surface geology. Watershed Sciences, Inc., provided files in the LASer (LAS) format containing laser returns that had been filtered, classified, and georeferenced. The USGS produced a hydro-flattened DEM from ground-classified points at Castle, Coldwater, and Spirit Lakes. Final results averaged about five laser last-return points per square meter. As reported by Watershed Sciences, Inc., vertical accuracy is 10 centimeters (cm) at the 95-percent confidence interval on bare road surfaces; however, over natural terrain, USGS found vertical accuracy to be 10–50 cm. This USGS data series contains the bare-earth lidar data as 1- and 10-meter (m) resolution Esri grid files. Digital-elevation data can be downloaded (1m_DEM.zip and 10m_DEM.zip), as well as a 1-m resolution hillshade image with pyramids (1m_hillshade.zip). These geospatial data files require geographic information system (GIS) software for viewing.

Washington

Antarctica: A Keystone in a Changing World--Online Proceedings for the Tenth International Symposium on Antarctic Earth Sciences. Santa Barbara, California, U.S.A.--August 26 to September 1, 2007

Overview: The International Symposium on Antarctic Earth Sciences (ISAES) is held once every four years to provide an international forum for presenting research results and new ideas and for planning future Antarctic geoscience research projects. This Tenth ISAES coincides with the International Polar Year (IPY; 50th Anniversary of the International Geophysical Year) and has been structured to showcase the great breadth of geoscience research being done in Antarctic regions by more than more than 100 institutions located in over 30 countries. The science program of the Symposium encompasses six broad themes that cover key topics on evolution and interactions of the geosphere, cryosphere and biosphere and their cross-linkages with past and historic paleoclimates. Emphasis is also on deciphering the climate records in ice cores, geologic cores, rock outcrops and those inferred from climate models. New technologies for the coming decades of geoscience data collection are also highlighted. Ten keynote presentations at the symposium outline the foundation for the research sessions of the symposium and the structure of the Online Proceedings and Proceedings Book for the Tenth ISAES. The ISAES is traditionally a cornerstone meeting for the Scientific Committee on Antarctic Research (SCAR). In recognition of the Tenth ISAES being held in the U.S. for the first time in 30 years and during IPY, the publication of the symposium proceedings is being handled as a special collaborative effort of the U.S. National Science Foundation, the U.S. Geological Survey, The National Academies Polar Research Board and The National Academies Press. The National Academies Polar Research Board oversees the activities of SCAR in the U.S. Special attention has been directed at publication formats for the symposium, to expedite the open and wide sharing of mature and preliminary research results presented in talks and posters at the Tenth ISAES. All symposium presentations are documented by a short Summary printed in the Symposium Program Booklet and either a short research paper or an extended abstract. The research papers and extended abstracts are compiled in this Online Proceedings and are replicated on a DVD-ROM that is placed in the back of the Tenth ISAES Proceedings Book. The Proceedings Book has printed versions of the keynote talks and an overview paper of the symposium. The short research papers and extended abstracts have been handled differently. Research papers present mature research results and syntheses. They have been peer-reviewed using standard journal procedures. Following revisions and acceptances by co-editors, the papers have been formatted for publication and proofread by authors. Each paper has been assigned a Digital Object Identification (DOI) number and separate html link, and posted online (as part of this USGS Open-File Report series) to ensure open and wide access to the research results. Extended abstracts focus on preliminary research results and have not been peer reviewed. They have had only minimal editorial review and revision. Authors have formatted and proofread their papers. Extended abstracts were not given DOI numbers and are included together in a separate chapter of this online Proceedings. USGS publications staff and Stanford-student editorial assistants indexed and compiled the PDF versions of the short research papers and extended abstracts for inclusion in this online Proceedings. USGS staff created the master DVD-ROM that contains a replica of the Online Proceedings for the Tenth ISAES, and provided the DVD-ROM copies that are included in the Tenth ISAES Proceedings Book published by The National Academies Press in the U.S. A team of more than 25 co-editors coordinated with the numerous authors and peer reviewers in handling the many research papers and extended abstracts that are included herein. Handling the large volume of short papers and extended abstracts, getting most of them onli

Open-File Report

High-resolution digital elevation model of lower Cowlitz and Toutle Rivers, adjacent to Mount St. Helens, Washington, based on an airborne lidar survey of October 2007

The lateral blast, debris avalanche, and lahars of the May 18th, 1980, eruption of Mount St. Helens, Washington, dramatically altered the surrounding landscape. Lava domes were extruded during the subsequent eruptive periods of 1980–1986 and 2004–2008. More than three decades after the emplacement of the 1980 debris avalanche, high sediment production persists in the Toutle River basin, which drains the northern and western flanks of the volcano. Because this sediment increases the risk of flooding to downstream communities on the Toutle and lower Cowlitz Rivers, the U.S. Army Corps of Engineers (USACE), under the direction of Congress to maintain an authorized level of flood protection, continues to monitor and mitigate excess sediment in North and South Fork Toutle River basins to help reduce this risk and to prevent sediment from clogging the shipping channel of the Columbia River. From October 22–27, 2007, Watershed Sciences, Inc., under contract to USACE, collected high-precision airborne lidar (light detection and ranging) data that cover 273 square kilometers (105 square miles) of lower Cowlitz and Toutle River tributaries from the Columbia River at Kelso, Washington, to upper North Fork Toutle River (below the volcano's edifice), including lower South Fork Toutle River. These data provide a digital dataset of the ground surface, including beneath forest cover. Such remotely sensed data can be used to develop sediment budgets and models of sediment erosion, transport, and deposition. The U.S. Geological Survey (USGS) used these lidar data to develop digital elevation models (DEMs) of the study area. DEMs are fundamental to monitoring natural hazards and studying volcanic landforms, fluvial and glacial geomorphology, and surface geology. Watershed Sciences, Inc., provided files in the LASer (LAS) format containing laser returns that had been filtered, classified, and georeferenced. The USGS produced a hydro-flattened DEM from ground-classified points at Castle and Coldwater Lakes. Final results averaged about two laser last-return points per square meter. As reported by Watershed Sciences, Inc., vertical accuracy is 10 centimeters (cm) at the 95-percent confidence interval on bare road surfaces; however, over natural terrain, USGS found vertical accuracy to be 10–50 cm. This USGS data series contains the bare-earth lidar data as 1- and 10-meter (m) resolution Esri grid files. Digital-elevation data can be downloaded (1m_DEM.zip and 10m_DEM.zip), as well as a 1-m resolution hillshade image with pyramids (1m_hillshade.zip). These geospatial data files require geographic information system (GIS) software for viewing.

Washington

Progress toward a National Water Census

Increasing demand and competition for limited regional water resources make it difficult to ensure adequate water availability for both human and ecological needs now and into the future. Recognizing the need to improve the tools and information that are available to effectively evaluate water-resource availability, the U.S. Geological Survey (USGS) identified a National Water Census (NWC) as one of its six core science directions for the decade 2007–17. In 2009, the SECURE Water Act (Public Law 111–11) authorized the USGS to develop a national water availability and use assessment program that would update the most recent national assessment of the status of water resources in the United States as well as develop the science to improve forecasts of water availability and quality for future needs. By evaluating large-scale effects of changes in land use and land cover, water use, and climate on occurrence and distribution of water, water quality, and human and aquatic-ecosystem health, the NWC will also help to inform a broader initiative by the Department of the Interior, WaterSMART (Sustain and Manage America's Resources for Tomorrow), which provides multiagency funding to pursue a sustainable water supply for the Nation as directed under the SECURE Water Act. Through the NWC, the USGS actively engages Federal, regional, and local stakeholders to identify research priorities and leverages current studies and program activities to provide information that is relevant at both the national and regional scales.

Fact Sheet

Simulation of flow and habitat conditions under ice, Cache la Poudre River - January 2006

The U.S. Forest Service authorizes the occupancy and use of Forest Service lands by various projects, including water storage facilities, under the Federal Land Policy and Management Act. Federal Land Policy and Management Act permits can be renewed at the end of their term. The U.S. Forest Service analyzes the environmental effects for the initial issuance or renewal of a permit and the terms and conditions (for example, mitigations plans) contained in the permit for the facilities. The U.S. Forest Service is preparing an environmental impact statement (EIS) to determine the conditions for the occupancy and use for Long Draw Reservoir on National Forest System administered lands. The scope of the EIS includes evaluating current operations and effects to fish habitat of an ongoing winter release of 0.283 m3 /s (10 ft3 /s) from headwater reservoirs as part of a previously issued permit. The field conditions observed during this study included this release. The U.S. Forest Service entered into an interagency agreement (05-IA-11021000-030) with the U.S. Geological Survey (USGS) Fort Collins Science Center to perform analysis of fish habitat and flow relationships in the Cache la Poudre River during winter ice-over conditions using a twodimensional hydrodynamic model. The U.S. Forest Service selected the Fort Collins Science Center for this task because of their expertise in developing two-dimensional hydraulic models for habitat modeling applications. This report transmits model results to the U.S. Forest Service to analyze the effects of alternative flow scenarios at a site on the mainstem Cache la Poudre River in Larimer County, Colorado, near Kinikinik (40° 42' 44.16" N. lat, 105° 44' 30.70" W. log), as shown in figure 1. It will be used in pending environmental analyses and decisions for the occupancy and use of the Arapaho-Roosevelt National Forest by water storage facilities. The water management scenarios of interest in this study are related to releasing water from Chambers and Barnes Meadows Reservoirs, based on the assumption that winter flow augmentation can increase potential fish habitat. Figure 2 shows the relationship between Chambers, Barnes Meadows, and Long Draw Reservoirs. At the time this study was proposed, existing flow simulation results showed that the channel constraints imposed by existing artificial low-head dikes would have little or no effect on the hydrodynamics of the river at the low flow levels that were to be evaluated. The Kinikinik study site contains deep pools, riffles, and runs. This diversity of habitat types made it ideal for assessing the effects of altered flow on fish habitat under ice in the main stem Cache la Poudre River. Thus, the Kinikinik site was selected for this study of winter habitat conditions. The preexisting topographic and hydrologic data collected at this site enabled data collection efforts for this study to focus on describing streamflow and ice cover during the winter months. A two-dimensional hydrodynamic model, River2D (Steffler and Blackburn, 2002), was used to simulate flow conditions under the ice cover that was observed January 24, 2006. The objectives of this study are (1) to describe the extent and thickness of ice cover, (2) simulate depth and velocity under ice at the study site for observed and reduced flows, and (3) to quantify fish habitat in this portion of the mainstem Cache la Poudre River for the current winter release schedule as well as for similar conditions without the 0.283 m 3 /s winter release.

Colorado

A preliminary report of a recently discovered aquifer at Sioux Falls, South Dakota

A hydrologic study of the Big Sioux aquifer system was begun July 1, 1966, by the U.S. Geological Survey, in cooperation with the City of Sioux Falls and the East Dakota Conservancy Sub-District. Test drilling being done in the search for a southern outlet to the Big Sioux aquifer has led to the discovery of the outlet and of a deeper aquifer than was previously know to exist in this area. This aquifer, herein called the Sioux Falls aquifer, was first recognized as a very clean gravel in test hole USGS #1 between the depths of 60 to 83 feet. Subsequent test drilling and aquifer testing has shown the Sioux Falls aquifer to be capable of producing several hundred gallons of water per minute. THe chemical quality of this water surpasses that currently being used for the city supply. Further investigation of the aquifer is planned as a part of the continuing expansion of the water-supply facilities for Sioux Falls. This publication has been authorized by the Director of the U.S. Geological Survey and Earl McCart, Commissioner, City of Sioux Falls, South Dakota.

South Dakota

User’s guide and metada for the PICES Nonindigenous Species Information System

Introduction Welcome to the PICES Nonindigenous Species Information System, a Microsoft Access database that displays the biogeographic distributions, invasion status, vectors, and key life history attributes of the approximately 740 reported nonindigenous species (NIS) in the estuarine and near-coastal habitats of the North Pacific and Hawaii. This database was developed by the U.S. Environmental Protection Agency and the U.S. Geological Survey under the auspices of Working Group 21 (Invasive Species) of the North Pacific Marine Science Organization (PCIES). The PICES database contains the data used to generate the “Atlas of Nonindigenous Marine and Estuarine Species in the North Pacific” (Lee and Reusser, 2012; herein referred to as the “Atlas”). The User’s Guide provides instructions on how to use the PICES database as well as metadata for the database and the Atlas. We note that for most users, the Atlas provides a simpler approach to accessing key information on NIS in the PICES countries than the database, though the database does provide additional information on species and sources as well as allowing users to extract information on specific taxa and/or locations (see Section 4). The PICES database also includes species reported from the PICES Rapid Assessment Surveys (RAS). PICES sponsored four rapid assessment surveys with the objective of quickly characterizing the native, non-native, and cryptogenic species present in different locations. Surveys were sponsored in Dalian, China in 2008, Jeju, Korea in 2009, Newport, Oregon, USA in 2010, and Peter the Great Bay, near Vladivostok and Nakhodka, Russia in 2011 ( http://www.pices.int/publications/pices_press/volume19/v19_n1/pp_30-31_Kobe-WS_f.pdf , http://www.pices.int/publications/pices_press/volume20/v20_n1/pp_26-29_RAS-2011.pdf ). The PICES database contains the RAS species that were made available in time for inclusion. Thus, the database does not capture all the species found in these surveys. In addition, much of the information on the RAS species was provided by the experts conducting the survey, and their distributions, environmental requirements, and life history attributes were not evaluated to the same level of detail by the PICES authors as the North Pacific NIS. In lieu of the more extensive review as conduced with the Atlas species, the information on the RAS species needs to be considered preliminary. Additionally, it is important to use the “Map All Distributions” option (see Section 3.6.6) when mapping their distribution or conducting a query. The general reference for the RAS surveys in the PICES database is “PICES Working Group 21, YEAR SURVEY”. The overall goal of both the database and Atlas was to simplify and standardize the dissemination of distributional, habitat, and life history characteristics of near-coastal and estuarine nonindigenous species. This database provides a means of querying these data and displaying the information in a consistent format. The specific classes of information the database captures include: Regional and global ranges of native and nonindigenous near-coastal and estuarine species at different hierarchical spatial scales. Habitat and physiological requirements of near-coastal and estuarine species. Life history characteristics of near-coastal and estuarine species. Invasion history and vectors for nonindigenous species. This standardized and synthesized data in the database and the Atlas provide the basic information needed to address a number of managerial and scientific needs. Thus, users will be able to: Create a baseline on the extent of invasion by region in order to assess new invasions. Use existing geographical patterns of invasion to gain some insights into potential new invaders. Use existing geographical patters of invasion to gain some insights into mechanisms affecting relative invasibility of different areas. Use life history attributes and environmental requirements of the reported nonindigenous species to evaluate traits of invaders. Understand the potential spread of invaders based on their habitat and environmental requirements. Understand importance of different vectors of introduction of nonindigenous species by region. The data in the Atlas of Nonindigenous Marine and Estuarine Species in the North Pacific (Lee and Reusser, 2012) are up-to-date as of June 2012. Updates to the PICES database were made in September 2012.

Report

Predictive mapping of seabirds, pinnipeds and cetaceans off the Pacific Coast of Washington

About this report This report supports Washington-led marine spatial planning and responsible stewardship of natural and cultural resources by the Olympic Coast National Marine Sanctuary. Washington state agencies and the sanctuary continually seek the best available science to improve management of marine uses and stewardship of resources (Etheridge et al., 2010; Washington Department of Fish and Wildlife, 2015a). This report and associated data provide new, state- and sanctuary-requested information on seabird, pinniped, and cetacean distributions. Through spatial planning, information on species distributions can help to identify high-value conservation areas, minimize adverse effects of ocean uses and mitigate impacts of coastal hazards. Correspondingly, the Washington Department of Fish and Wildlife has already begun to use the maps of predicted relative density presented in this report to identify ecologically important areas off the Pacific Coast of Washington and apply this information to plan for offshore renewable energy development. This is the culmination of three years of work to compile information on seabirds, pinnipeds, and cetaceans, and advance a modeling framework that can integrate data sets and develop accurate predictions of relative density for important species off the Pacific Coast of Washington. Previous reports, which evaluated existing datasets of at-sea observations (Menza et al., 2014; Kracker and Menza, 2015) and presented superseded versions of seabird models (Menza et al., 2015), provided base information for this report. In addition to the maps in this published report, all new seabird, pinniped and cetacean predictions will be made publicly available as digital geospatial data through the National Centers for Environmental Information. This research supports the National Oceanic and Atmospheric Administration (NOAA) Coastal Zone Management Program, a voluntary partnership between the federal government and U.S. coastal and Great Lakes states and territories authorized by the Coastal Zone Management Act (CZMA) of 1972 to address national coastal issues. The act provides the basis for protecting, restoring, and responsibly developing our nation’s diverse coastal communities and resources. To meet the goals of the CZMA, the national program takes a comprehensive approach to coastal resource management – balancing the often competing and occasionally conflicting demands of coastal resource use, economic development, and conservation. A wide range of issues are addressed through the program, including coastal development, water quality, public access, habitat protection, energy facility siting, ocean governance and planning, coastal hazards, and climate change. Accurate maps of seabird and marine mammal distributions are an important tool for making informed management decisions that affect all of these issues.

Washington

The Borderlands - A region of physical and cultural diversity: Chapter 2 in United States-Mexican Borderlands: Facing tomorrow's challenges through USGS science

The area surrounding the United States–Mexican border is very physically and culturally diverse and cannot be generalized by any single description. To assist in an accurate appraisal and understanding of this remarkable region, the Borderlands team has divided it into eight subareas based on the watershed subareas of the U.S. Geological Survey Border Environmental Health Initiative (http://borderhealth.cr.usgs.gov) (fig. 2–1), the boundaries of which are defined primarily by surface-water drainage basins. The drainage basins directly adjacent to or crossing the international boundary were automatically included in the defined border region, as were those basins that contain unconsolidated aquifers that extend to or cross the international boundary. Also, “protected areas” adjacent to included basins were selectively added to the defined border region. Though some geographic features are entirely within the Borderlands, many features—deserts, mountain ranges, rivers, etc.— extend beyond the region boundaries but are still influential to Borderlands environments (fig. 2–2). In some cases, the authors of the following chapters have made fine adjustments to the Borderlands boundaries, and they have described those alterations where necessary. By describing and studying these subareas individually and comparing them to one another, we can emphasize the physical and cultural diversity that makes the Borderlands such an important geographic area.

United States-Mexico Borderlands

Global Data Toolset (GDT)

According to the United Nations Environment Programme World Conservation Monitoring Centre (UNEP-WCMC) approximately 60 percent of the data contained in the World Database on Protected Areas (WDPA) has missing or incomplete boundary information. As a result, global analyses based on the WDPA can be inaccurate, and professionals responsible for natural resource planning and priority setting must rely on incomplete geospatial data sets. To begin to address this problem the World Data Center for Biodiversity and Ecology, in cooperation with the U. S. Geological Survey (USGS) Rocky Mountain Geographic Science Center (RMGSC), the National Biological Information Infrastructure (NBII), the Global Earth Observation System, and the Inter-American Biodiversity Information Network (IABIN) sponsored a Protected Area (PA) workshop in Asuncion, Paraguay, in November 2007. The primary goal of this workshop was to train representatives from eight South American countries on the use of the Global Data Toolset (GDT) for reviewing and editing PA data. Use of the GDT will allow PA experts to compare their national data to other data sets, including non-governmental organization (NGO) and WCMC data, in order to highlight inaccuracies or gaps in the data, and then to apply any needed edits, especially in the delineation of the PA boundaries. In addition, familiarizing the participants with the web-enabled GDT will allow them to maintain and improve their data after the workshop. Once data edits have been completed the GDT will also allow the country authorities to perform any required review and validation processing. Once validated, the data can be used to update the global WDPA and IABIN databases, which will enhance analysis on global and regional levels.

Fact Sheet

Public-policy issues associated with the SAFRR Tsunami Scenario

The SAFRR (Science Application for Risk Reduction) tsunami scenario simulates a tsunami generated by a hypothetical magnitude 9.1 earthquake that occurs offshore of the Alaska Peninsula (Kirby and others, 2013). In addition to the work performed by the authors on public-policy issues associated with the SAFRR tsunami scenario, this section of the scenario also reflects the policy discussions of the State of California’s Tsunami Policy Work Group, a voluntary advisory body formed in October 2011, which operates under the California Natural Resources Agency (CNRA), Department of Conservation, and is charged with identifying, evaluating, and making recommendations to resolve issues that are preventing full and effective implementation of tsunami hazard mitigation and risk reduction throughout California’s coastal communities. It also presents the analyses of plans and hazard policies of California’s coastal counties, incorporated cities, and major ports performed by the staff of the California Geological Survey (CGS) and Lauren Prehoda, Office of Environmental and Government Affairs, California Department of Conservation. It also draws on the policy framework and assessment prepared for the ARkStorm Pacific Coast winter storm and catastrophic flooding (Topping and others, 2010).

Open-File Report

An open source database for the synthesis of soil radiocarbon data: ISRaD version 1.0

Radiocarbon is a critical constraint on our estimates of the timescales of soil carbon cycling that can aid in identifying mechanisms of carbon stabilization and destabilization and improve the forecast of soil carbon response to management or environmental change. Despite the wealth of soil radiocarbon data that have been reported over the past 75 years, the ability to apply these data to global-scale questions is limited by our capacity to synthesize and compare measurements generated using a variety of methods. Here, we present the International Soil Radiocarbon Database (ISRaD; http://soilradiocarbon.org , last access: 16 December 2019), an open-source archive of soil data that include reported measurements from bulk soils, distinct soil carbon pools isolated in the laboratory by a variety of soil fractionation methods, samples of soil gas or water collected interstitially from within an intact soil profile, CO 2 gas isolated from laboratory soil incubations, and fluxes collected in situ from a soil profile. The core of ISRaD is a relational database structured around individual datasets (entries) and organized hierarchically to report soil radiocarbon data, measured at different physical and temporal scales as well as other soil or environmental properties that may also be measured and may assist with interpretation and context. Anyone may contribute their own data to the database by entering it into the ISRaD template and subjecting it to quality assurance protocols. ISRaD can be accessed through (1) a web-based interface, (2) an R package (ISRaD), or (3) direct access to code and data through the GitHub repository, which hosts both code and data. The design of ISRaD allows for participants to become directly involved in the management, design, and application of ISRaD data. The synthesized dataset is available in two forms: the original data as reported by the authors of the datasets and an enhanced dataset that includes ancillary geospatial data calculated within the ISRaD framework. ISRaD also provides data management tools in the ISRaD-R package that provide a starting point for data analysis; as an open-source project, the broader soil community is invited and encouraged to add data, tools, and ideas for improvement. As a whole, ISRaD provides resources to aid our evaluation of soil dynamics across a range of spatial and temporal scales. The ISRaD v1.0 dataset is archived and freely available at https://doi.org/10.5281/zenodo.2613911 (Lawrence et al., 2019).

Earth System Science Data