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Rivers and streams: Physical setting and adapted biota

Streams and rivers are enormously important, with their ecological, and economic value, greatly outweighing their significance on the landscape. Lotic ecology began in Europe with a focus on the distribution, abundance, and taxonomic composition of aquatic organisms and in North American with a focus on fishery biology. Since 1980, stream/river research has been highly interdisciplinary, involving fishery biologists, aquatic entomologists, algologists, hydrologists, geomorphologists, microbiologists, and terrestrial plant ecologists. Stream and river biota evolved in response to, and in concert with, the physical and chemical setting. Streams/rivers transport water and move sediments to the sea as part of the hydrologic cycle that involves evaporation, plant evapotranspiration, and precipitation. Ephemeral streams flow only in the wettest year, intermittent streams flow predictably every year during capture of surface runoff, and perennial streams flow continuously during wet and dry periods, receiving both stormflow and groundwater baseflow. The lotic biota, for example, algae, macrophytes, benthic invertebrates, and fishes, have evolved adaptations to their running-water setting. Dominant physical features of this setting are current, substrate, and temperature. Key chemical constituents are dissolved gases, dissolved inorganic ions and compounds, particulate inorganic material, particulate organic material, and dissolved organic ions (nitrogen and phosphorus) and compounds.

Book chapter↗

A review of Cattail ( Typha ) invasion in North American wetlands

Overview Cattail ( Typha ) is an iconic emergent wetland plant found worldwide. By producing an abundance of wind-dispersed seeds, cattail can colonize wetlands across great distances, and its rapid growth rate, large size, and aggressive expansion result in dense stands in a variety of aquatic ecosystems such as marshes, ponds, lakes, and riparian areas. Cattail can also quickly dominate disturbed areas with waterlogged soils such as roadside ditches, retention areas, and fringes of stormwater ponds. These dense stands impact local plant and animal life, biogeochemical cycling, and wetland hydrology, which in turn alter wetland functions. Over recent decades, the distribution and abundance of cattail in North America has increased as a result of human disturbances to natural water cycles and increased nutrient loads. In addition, highly competitive nonnative and hybrid taxa have worsened the rapid spread of cattail. Because cattail invasion and expansion often change wetlands in undesirable ways, wetland managers often respond with widespread management efforts, though these efforts may have short-lived or weak effects. Notwithstanding the negative impacts, cattail provides beneficial ecosystem services including the reduction of pollution through bioremediation and the production of biofuel material. Despite the widespread distribution and invasive characteristics of cattail, a comprehensive review and synthesis of past and current research on cattail was lacking. To address this gap, a diverse team of researchers produced a paper that details the spread and management of cattail throughout North America, summarizing 4 decades of research from more than 650 references (Bansal and others, 2019). This fact sheet highlights the primary topics covered in the paper.

Fact Sheet↗

Predictive Management of Asian Carps in the Upper Mississippi River System

Prolific non-native organisms pose serious threats to ecosystems and economies worldwide. Nonnative bighead carp ( Hypophthalmichthys nobilis ) and silver carp ( H. molitrix ), collectively referred to as Asian carps, continue to colonize aquatic ecosystems throughout the central United States. These species are r-selected, exhibiting iteroparous spawning, rapid growth, broad environmental tolerance, high density, and long-distance movement. Hydrological, thermal, and physicochemical conditions are favorable for establishment beyond the current range, rendering containment and control imperative. Ecological approaches to confine Asian carp populations and prevent colonization characterize contemporary management in the United States. Foraging and reproduction of Asian carps govern habitat selection and movement, providing valuable insight for predictive control. Current management approaches are progressive and often anticipatory but deficient in human dimensions. We define predictive management of Asian carps as synthesis of ecology and human dimensions at regional and local scales to develop strategies for containment and control. We illustrate predictive management in the Upper Mississippi River System and suggest resource managers integrate predictive models, containment paradigms, and human dimensions to design effective, socially acceptable management strategies. Through continued research, university-agency collaboration, and public engagement, predictive management of Asian carps is an auspicious paradigm for preventing and alleviating consequences of colonization in the United States.

Reviews in Fisheries Science & Aquaculture↗

Continuing progress toward a national assessment of water availability and use

Executive Summary The Omnibus Public Land Management Act of 2009 (Public Law 111—11) was passed into law on March 30, 2009. Subtitle F, also known as the SECURE Water Act, calls for the establishment of a “national water availability and use assessment program” within the U.S. Geological Survey (USGS). The USGS issued the first report on the program in 2013. Program progress over the period 2013–17 is reported herein to fulfill the requirement to inform Congress on implementation of the national water availability and use assessment program, also referred to as the USGS National Water Census (the Water Census). Much work has been accomplished during 2013–17 on producing water budgets for the nation, a goal USGS outlined in its first report on program progress to Congress. The USGS has completed three geographic focus area studies and has begun three others. Work has advanced on nationwide efforts in streamflow analysis, groundwater assessment and research, evapotranspiration studies, water use, environmental water science, and drought science. The USGS works with Federal and non-Federal agencies, universities, and other organizations to ensure that the information can be aggregated with other types of water-availability and socioeconomic information, such as data on food and energy production. The USGS has also made great strides in measures for delivering data and information on the Water Census to stakeholders and the public. Much work remains to be accomplished for the Nation to have a comprehensive, ongoing Water Census. In this report, the USGS lays out activities to be accomplished in the next 5 years (2017–22), based upon current funding levels. These include selecting new focus area studies, conducting hydrologic modeling to complete water budgets for the conterminous United States, expanding groundwater modeling efforts, mapping a national classification system for environmental water science, and developing an inventory of interbasin water transfers. All of these steps are necessary in order for the Water Census to achieve the goals outlined by Congress in the SECURE Water Act.

Circular↗

Current advances in coastal wetland elevation dynamics: Introduction to the special issue

The thematic issue entitled, “Current Advances in Coastal Wetland Elevation Dynamics,” draws on topics from two special sessions at the CERF 2021 conference plus additional recent research describing scientific insights gained from the Surface Elevation Table–Marker Horizon (SET–MH) method and its application across the globe to quantify and understand subsurface process influences on wetland elevation change and wetland responses to sea-level rise. The findings group articles within each of five thematic topics. (1) A 30-year retrospective on the scientific insights gained on surface and shallow subsurface process dynamics. (2) Investigations of the subsurface soil process influences on wetland elevation. (3) How the scientific community applies the SET–MH method to quantify and understand wetland responses to RSLR and other environmental drivers such as altered hydrology and sediment supply. (4) How SET–MH data are used in long-term monitoring networks at different geographic scales. (5) Pairing the SET-MH method with (a) survey techniques to increase lateral coverage of wetland elevation trends and (b) geodetic measurements to increase vertical coverage of vertical land motion.

Estuaries and Coasts↗

Use of alligator hole abundance and occupancy rate as indicators for restoration of a human-altered wetland

Use of indicator species as a measure of ecosystem conditions is an established science application in environmental management. Because of its role in shaping wetland systems, the American alligator (Alligator mississippiensis) is one of the ecological indicators for wetland restoration in south Florida, USA. We conducted landscape-level aerial surveys of alligator holes in two different habitats in a wetland where anthropogenic modification of surface hydrology has altered the natural system. Alligator holes were scarcer in an area where modified hydrology caused draining and frequent dry-downs compared to another area that maintains a functional wetland system. Lower abundance of alligator holes indicates lack of alligator activities, lower overall species diversity, and lack of dry-season aquatic refugia for other organisms. The occupancy rate of alligator holes was lower than the current restoration target for the Everglades, and was variable by size class with large size-class alligators predominantly occupying alligator holes. This may indicate unequal size-class distribution, different habitat selection by size classes, or possibly a lack of recruitment. Our study provides pre-restoration baseline information about one indicator species for the Everglades. Success of the restoration can be assessed via effective synthesis of information derived by collective research efforts on the entire suite of selected ecological indicators.

Florida↗

The human dimension of fire regimes on Earth

Humans and their ancestors are unique in being a fire‐making species, but ‘natural’ (i.e. independent of humans) fires have an ancient, geological history on Earth. Natural fires have influenced biological evolution and global biogeochemical cycles, making fire integral to the functioning of some biomes. Globally, debate rages about the impact on ecosystems of prehistoric human‐set fires, with views ranging from catastrophic to negligible. Understanding of the diversity of human fire regimes on Earth in the past, present and future remains rudimentary. It remains uncertain how humans have caused a departure from ‘natural’ background levels that vary with climate change. Available evidence shows that modern humans can increase or decrease background levels of natural fire activity by clearing forests, promoting grazing, dispersing plants, altering ignition patterns and actively suppressing fires, thereby causing substantial ecosystem changes and loss of biodiversity. Some of these contemporary fire regimes cause substantial economic disruptions owing to the destruction of infrastructure, degradation of ecosystem services, loss of life, and smoke‐related health effects. These episodic disasters help frame negative public attitudes towards landscape fires, despite the need for burning to sustain some ecosystems. Greenhouse gas‐induced warming and changes in the hydrological cycle may increase the occurrence of large, severe fires, with potentially significant feedbacks to the Earth system. Improved understanding of human fire regimes demands: (1) better data on past and current human influences on fire regimes to enable global comparative analyses, (2) a greater understanding of different cultural traditions of landscape burning and their positive and negative social, economic and ecological effects, and (3) more realistic representations of anthropogenic fire in global vegetation and climate change models. We provide an historical framework to promote understanding of the development and diversification of fire regimes, covering the pre‐human period, human domestication of fire, and the subsequent transition from subsistence agriculture to industrial economies. All of these phases still occur on Earth, providing opportunities for comparative research.

Journal of Biogeography↗

Visualizing NetCDF Files by Using the EverVIEW Data Viewer

Over the past few years, modelers in South Florida have started using Network Common Data Form (NetCDF) as the standard data container format for storing hydrologic and ecologic modeling inputs and outputs. With its origins in the meteorological discipline, NetCDF was created by the Unidata Program Center at the University Corporation for Atmospheric Research, in conjunction with the National Aeronautics and Space Administration and other organizations. NetCDF is a portable, scalable, self-describing, binary file format optimized for storing array-based scientific data. Despite attributes which make NetCDF desirable to the modeling community, many natural resource managers have few desktop software packages which can consume NetCDF and unlock the valuable data contained within. The U.S. Geological Survey and the Joint Ecosystem Modeling group, an ecological modeling community of practice, are working to address this need with the EverVIEW Data Viewer. Available for several operating systems, this desktop software currently supports graphical displays of NetCDF data as spatial overlays on a three-dimensional globe and views of grid-cell values in tabular form. An included Open Geospatial Consortium compliant, Web-mapping service client and charting interface allows the user to view Web-available spatial data as additional map overlays and provides simple charting visualizations of NetCDF grid values.

Fact Sheet↗

Nutrient (N, P) loads and yields at multiple scales and subbasin types in the Yukon River basin, Alaska

Loads and yields of dissolved and particulate nitrogen (N) and phosphorus (P) were measured and modeled at three locations on the Yukon River (YR) and on the Tanana and Porcupine Rivers in Alaska during 2001-2005. Total export of N and P upstream of Yukon Delta averaged 120 Gg N a-1 and 56 Gg P a-1, respectively, with 43.5% of total N (TN) as dissolved organic N, and 98% of total P (TP) as particulate phosphorus. Approximately half of the annual export of TN and TP occurred during spring. Hydrologic yields ofTN (5.6-13.3 mmol N m-2 a-1) and TP (0.8-9.0 mmol P m-2 a-1) were least in the Porcupine basin and greatest in the Tanana basin and were proportional to water yield. Comparison of current and historical dissolved organic matter (DOM) export from the basin indicates decreased DON export with respect to total water discharge during summer and autumn in recent decades. Any possible climate-related change in annual water discharge will result in proportional changes in N and P export.

Journal of Geophysical Research G: Biogeosciences↗

Coastal Salinity Index along the southeastern Atlantic coast and the Gulf of Mexico, 1983 to 2018

Coastal droughts have a different dynamic than upland droughts, which are typically characterized by agricultural, hydrologic, meteorological, and (or) socioeconomic effects. Drought uniquely affects coastal ecosystems because of changes in the salinity conditions of estuarine creeks and rivers. The location of the freshwater-saltwater interface in surface-water bodies is an important factor in the ecological and socioeconomic dynamics of coastal communities. To address the data and information gap for characterizing coastal drought, the Coastal Salinity Index (CSI) was developed by using salinity data. The CSI uses a computational approach similar to the Standardized Precipitation Index. The CSI can be computed for unique time intervals (for example 1-, 6-, 12-, and 24-month intervals) to characterize short- and long-term drought (saline) conditions, as well as wet (high freshwater inflow) conditions. To encourage the use of the CSI in current and future research endeavors, this investigation addressed three activities to enhance the use and application of the CSI. First, a software package was developed for the consistent computation of the CSI that includes preprocessing of salinity data, filling missing data, computing the CSI, post-processing, and generating the supporting metadata. This software package is available for download from the U.S. Geological Survey GitLab repository. Second, the CSI has been computed at sites along the southeastern Atlantic coast (Florida to North Carolina) and the Gulf of Mexico (Texas to Florida) to increase the opportunity for linking the CSI to ecological response data. Third, using telemetered salinity data, the real-time computation of the CSI has been prototyped and disseminated on the web.

Alabama, Florida, Georgia, Louisiana, Mississippi,↗

Problems of underground storage of wastes

Problems of underground storage of waste involve geology in its broadest sense, including hydrology, geochemistry, and geophysics. Wastes may be solid, liquid, or gaseous, and they may be chemically toxic or noxious, esthetically offensive, or radioactive. Some wastes require only temporary containment, whereas others must be isolated for indefinitely long periods. The means and locale for emplacement underground depend upon many governing geological factors, including the physical, chemical, hydrological, and hydraulic properties of the host formation. These must be studied relative to the physical, chemical, and thermal properties of the waste and of potential interactions between the waste and the host formation. Thorough knowledge is essential because lack of it may lead to undesirable or disastrous environmental consequences. Escape of waste may contaminate the surface or near-surface environment; it may destroy the usefulness or accessibility of resources such as ground water, petroleum, and minerals. Effective management of underground waste requires adaptation of current technology and development of new technology.

Journal of Research of the U.S. Geological Survey↗

Featured collection introduction: Connectivity of streams and wetlands to downstream waters

Connectivity is a fundamental but highly dynamic property of watersheds. Variability in the types and degrees of aquatic ecosystem connectivity presents challenges for researchers and managers seeking to accurately quantify its effects on critical hydrologic, biogeochemical, and biological processes. However, protecting natural gradients of connectivity is key to protecting the range of ecosystem services that aquatic ecosystems provide. In this featured collection, we review the available evidence on connections and functions by which streams and wetlands affect the integrity of downstream waters such as large rivers, lakes, reservoirs, and estuaries. The reviews in this collection focus on the types of waters whose protections under the U.S. Clean Water Act have been called into question by U.S. Supreme Court cases. We synthesize 40+ years of research on longitudinal, lateral, and vertical fluxes of energy, material, and biota between aquatic ecosystems included within the Act's frame of reference. Many questions about the roles of streams and wetlands in sustaining downstream water integrity can be answered from currently available literature, and emerging research is rapidly closing data gaps with exciting new insights into aquatic connectivity and function at local, watershed, and regional scales. Synthesis of foundational and emerging research is needed to support science‐based efforts to provide safe, reliable sources of fresh water for present and future generations.

Journal of the American Water Resources Associatio↗

Uses, funding, and availability of continuous streamflow data in Montana

This report documents the results of a study of the uses, funding, and availability of continuous streamflow data collected and published by the U.S. Geological Survey in Montana. Data uses and funding sources are identified for the 218 continuous streamflow gages currently (1984) being operated. These stations are supported by 18 different funding sources at a budget for the 1984 water year of $1,065,000. The streamflow-gaging program in Montana has evolved through the years as Federal, State, and local needs for surface-water data have increased. Continuous streamflow records for periods ranging from less than 1 year to more than 90 years have been collected. This report describes phase 1 of a cost-effectiveness study of the streamflow-gaging program in Montana. Evaluation of the program indicates that numerous agencies use the data for studies involving regional hydrology, hydrologic systems, and planning and design. They also use the data for operations of existing hydroelectric and irrigation dams, forecasting flood and seasonal flows, water-quality monitoring, research studies for fish habitat, and other uses such as recreational management. (USGS)

Open-File Report↗

Preliminary geochemical assessment of water in selected streams, springs, and caves in the Upper Baker and Snake Creek drainages in Great Basin National Park, Nevada, 2009

Water in caves, discharging from springs, and flowing in streams in the upper Baker and Snake Creek drainages are important natural resources in Great Basin National Park, Nevada. Water and rock samples were collected from 15 sites during February 2009 as part of a series of investigations evaluating the potential for water resource depletion in the park resulting from the current and proposed groundwater withdrawals. This report summarizes general geochemical characteristics of water samples collected from the upper Baker and Snake Creek drainages for eventual use in evaluating possible hydrologic connections between the streams and selected caves and springs discharging in limestone terrain within each watershed. Generally, water discharging from selected springs in the upper Baker and Snake Creek watersheds is relatively young and, in some cases, has similar chemical characteristics to water collected from associated streams. In the upper Baker Creek drainage, geochemical data suggest possible hydrologic connections between Baker Creek and selected springs and caves along it. The analytical results for water samples collected from Wheelers Deep and Model Caves show characteristics similar to those from Baker Creek, suggesting a hydrologic connection between the creek and caves, a finding previously documented by other researchers. Generally, geochemical evidence does not support a connection between water flowing in Pole Canyon Creek to that in Model Cave, at least not to any appreciable extent. The water sample collected from Rosethorn Spring had relatively high concentrations of many of the constituents sampled as part of this study. This finding was expected as the water from the spring travelled through alluvium prior to being discharged at the surface and, as a result, was provided the opportunity to interact with soil minerals with which it came into contact. Isotopic evidence does not preclude a connection between Baker Creek and the water discharging from Rosethorn Spring. The residence time of water discharging into the caves and from selected springs sampled as part of this study ranged from 10 to 25 years. Within the upper Snake Creek drainage, the results of this study show geochemical similarities between Snake Creek and Outhouse Spring, Spring Creek Spring, and Squirrel Spring Cave. The strontium isotope ratio ( 87 Sr/ 86 Sr) for intrusive rock samples representative of the Snake Creek drainage were similar to carbonate rock samples. The water sample collected from Snake Creek at the pipeline discharge point had lower strontium concentrations than the sample downstream and a similar 87 Sr/ 86 Sr value as the carbonate and intrusive rocks. The chemistry of the water sample was considered representative of upstream conditions in Snake Creek and indicates minimal influence of rock dissolution. The results of this study suggest that water discharging from Outlet Spring is not hydrologically connected to Snake Creek but rather is recharged at high altitude(s) within the Snake Creek drainage. These findings for Outlet Spring largely stem from the relatively high specific conductance and chloride concentration, the lightest deuterium (δD) and oxygen-18 (δ 18 O) values, and the longest calculated residence time (60 to 90 years) relative to any other sample collected as part of this study. With the exception of water sampled from Outlet Spring, the residence time of water discharging into Squirrel Spring Cave and selected springs in the upper Snake Creek drainage was less than 30 years.

Nevada↗

Hot spots and hot moments in the Critical Zone: Identification of and incorporation into reactive transport models

Biogeochemical processes are often spatially discrete (hot spots) and temporally isolated (hot moments) due to variability in controlling factors like hydrologic fluxes, lithological characteristics, bio-geomorphic features, and external forcing. Although these hot spots and hot moments (HSHMs) account for a high percentage of carbon, nitrogen and nutrient cycling within the Critical Zone, the ability to identify and incorporate them into reactive transport models remains a significant challenge. This chapter provides an overview of the hot spots hot moments (HSHMs) concepts, where past work has largely focused on carbon and nitrogen dynamics within riverine systems. This work is summarized in the context of process-based and data-driven modeling approaches, including a brief description of recent research that casts a wider net to incorporate Hg, Fe and other Critical Zone elements, and focuses on interdisciplinary approaches and concepts. The broader goal of this chapter is to provide an overview of the gaps in our current understanding of HSHMs, and the opportunities therein, while specifically focusing on the underlying parameters and processes leading to their prognostic and diagnostic representation in reactive transport models.

Book chapter↗

Assessing the Birkenes Model of stream acidification using a multisignal calibration methodology

A revision of the Birkenes model of streamwater acidification has been attempted to incorporate additional chemical and hydrologic information gained in the last 6 years since its original construction. The first stage of this effort has been an analysis of the hydrologic submodel with the goal of extending it to predict concentrations of a conservative tracer in streamwater. An objective calibration of the model indicated that the model is overparameterized. Only one passive store is identifiabile, not two as currently contained in the model and the routing between the two reservoirs is not determined by the data. Inclusion of the conservative tracer improved the identifiability of the dimensional parameters, but had little effect on the rate or routing parameters. If the hydrologic structure is to be determined from the hydrograph and conservative tracer alone, it must be simplified to eliminate unidentifiable parameters. The validity of using more complex rainfall-runoff models in hydrochemical models which seek to test chemical mechanisms is called into question by this analysis.

Water Resources Research↗

Climatology and potential effects of an emergency outlet, Devils Lake Basin, North Dakota

The Devils Lake Basin is a 3,810-square-mile subbasin in the Red River of the North Basin. At an elevation of about 1,447 feet above sea level, Devils Lake begins to spill into Stump Lake; and at an elevation of about 1,459 feet above sea level, the combined lakes begin to spill through Tolna Coulee into the Sheyenne River. Since the end of glaciation about 10,000 years ago, Devils Lake has fluctuated between spilling and being dry. Research by the North Dakota Geological Survey indicates Devils Lake has overflowed into the Sheyenne River at least twice during the past 4,000 years and has spilled into the Stump Lakes several times (Bluemle, 1991; Murphy and others, 1997). John Bluemle, North Dakota State Geologist, concluded the natural condition for Devils Lake is either rising or falling, and the lake should not be expected to remain at any elevation for a long period of time. Recent conditions indicate the lake is in a rising phase. The lake rose 24.7 feet from February 1993 to August 1999, and flood damages in the Devils Lake Basin have exceeded $300 million. These damages, and the potential for additional damages, have led to an effort to develop an outlet to help control lake levels. Therefore, current and accurate climatologic and hydrologic data are needed to assess the viability of the various options to reduce flood damages at Devils Lake.

Fact Sheet↗

Understanding predator-prey-competitor dynamics between Lower Missouri River Macrhybopsis and Scaphirhynchus using a population—bioenergetics model ensemble

The pallid sturgeon Scaphirhynchus albus is a long-lived, endangered fish in the Missouri River. Individuals become piscivorous as adults, so recruitment from stocking or reproduction could reduce populations of prey, including Macrhybopsis chubs. We constructed an individual- and age-based, multi-species, predator-prey-competitor model (IAMP) to represent the benthic community (sturgeons, chubs, and chironomids) of the Lower Missouri River (LMR) to explore scenarios of potential predator-prey-competitor dynamics. Our simulations suggest that chubs alone are unlikely able to support a level of LMR pallid sturgeon similar to historical or current populations. These simulations also suggest that adult pallid sturgeon may need to shift to non-chub prey fish to achieve the greater sizes observed in the Upper Missouri River. When annual hydrologic regimes were included, we found a negative relationship between chub relative abundance and previous year 30-day minimum flows. Inclusion of temporal environmental variability made it clear that large chub populations may be necessary to support LMR pallid sturgeon. When full stochasticity was included in the IAMP, chub population sizes needed to increase further to ensure continued reproduction and recruitment of both chubs and pallid sturgeon. These results support the hypothesis that the pallid sturgeon population in the Lower Missouri River may be food-limited. However, the full extent of this limitation and the management changes needed to address this will require more research on the biology and population dynamics of this fish community, on pallid sturgeon interactions with prey species, and on how sympatric species may be affected during the pallid sturgeon recovery process.

Colorado, Kansas, Minnesota, Missouri, Montana, Ne↗