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A New Map of Standardized Terrestrial Ecosystems of the Conterminous United States

A new map of standardized, mesoscale (tens to thousands of hectares) terrestrial ecosystems for the conterminous United States was developed by using a biophysical stratification approach. The ecosystems delineated in this top-down, deductive modeling effort are described in NatureServe's classification of terrestrial ecological systems of the United States. The ecosystems were mapped as physically distinct areas and were associated with known distributions of vegetation assemblages by using a standardized methodology first developed for South America. This approach follows the geoecosystems concept of R.J. Huggett and the ecosystem geography approach of R.G. Bailey. Unique physical environments were delineated through a geospatial combination of national data layers for biogeography, bioclimate, surficial materials lithology, land surface forms, and topographic moisture potential. Combining these layers resulted in a comprehensive biophysical stratification of the conterminous United States, which produced 13,482 unique biophysical areas. These were considered as fundamental units of ecosystem structure and were aggregated into 419 potential terrestrial ecosystems. The ecosystems classification effort preceded the mapping effort and involved the independent development of diagnostic criteria, descriptions, and nomenclature for describing expert-derived ecological systems. The aggregation and labeling of the mapped ecosystem structure units into the ecological systems classification was accomplished in an iterative, expert-knowledge-based process using automated rulesets for identifying ecosystems on the basis of their biophysical and biogeographic attributes. The mapped ecosystems, at a 30-meter base resolution, represent an improvement in spatial and thematic (class) resolution over existing ecoregionalizations and are useful for a variety of applications, including ecosystem services assessments, climate change impact studies, biodiversity conservation, and resource management.

Professional Paper

Persistent organic pollutants in wetlands of the Mekong Basin

In this study, the presence and concentration of persistent organic pollutants (POP) were assessed in surface sediments collected from a wide variety of wetlands located throughout the Mekong Basin in Myanmar, Lao People’s Democratic Republic (PDR), Thailand, Cambodia, and Vietnam. Of the 39 POPs tested in 531 sediment samples, dichlorodiphenyltrichloroethane (DDT) and its metabolites endosulfan, hexachlorobenzene (HCB), and endrin were most commonly detected. Even though DDT was banned in the 1990s, some use of DDT may still be occurring in the Mekong Basin. The amount of metabolites for DDT—dichlorodiphenyldichloroethylene (DDE) and dichlorodiphenyldichloroethane (DDD)—found, however, suggests that use of DDT is on the decline throughout the region. HCB and endrin were found distributed broadly throughout the Mekong Basin but not in high amounts. The concentration and distribution of endosulfan and its metabolites represent a serious problem requiring further study and management action. While the total loading of POPs in wetland sediments of the Mekong Basin was generally low, hotspot sites occurred where concentrations exceeded established ecological risk thresholds. For example, wetlands of the open, dry dipterocarp forest of northern Cambodia and Vietnam as well as wetlands in the Mekong Delta of Vietnam contained high concentrations of some POPs. High concentrations of POPs were detected in some wetlands important for biodiversity conservation. Hotspots identified in wetlands such as the Tonle Sap not only had concentrations of DDT and DDE that exceeded Canadian and U.S. benchmarks, but fauna sampled in the area also showed high degrees of bioaccumulation of the same substances. Further and more extensive attention to monitoring POP presence in water birds, fish, and other aquatic organisms is warranted because of the bioaccumulation of these chemicals at higher levels in the food chain. This study represents a collaboration of eight universities from five countries in the Mekong Region (Myanmar, Lao PDR, Thailand, Cambodia and Vietnam) and four universities and research institutions from the United States. Funding for the study came from the Lower Mekong Initiative, U.S. Department of State.

Mekong Basin

Building resilience in dryland ecosystems: A climate adaptation strategy menu for pinyon–juniper woodlands

Pinyon–juniper (PJ) woodlands, one of the most extensive mature and old-growth woodland types in the Western United States, provide critical ecological, cultural, and economic benefits but face increasing threats from climate change, altered disturbance regimes, invasive species, and pests. We developed the PJ Woodland Climate Adaptation Management Menu, a decision support tool designed to guide adaptive, climate-informed management of PJ ecosystems, particularly within the Colorado Plateau ecoregion. The menu was created through an iterative, collaborative process involving literature review, integration of strategies from existing adaptation frameworks, and extensive input from scientists, land managers, and community partners during workshops and focus groups. The menu links specific, evidence-based approaches to each of six broad strategies, including soliciting community input, mitigating disturbance, enhancing and maintaining biodiversity, conserving ecotones, timing actions for optimal outcomes, and accepting climate-driven changes when appropriate. It is intended for use with the Adaptation Workbook to help managers connect local goals and climate vulnerabilities to tailored management tactics. Hypothetical scenarios demonstrate the menu’s application to contrasting PJ woodland conditions, from die-off events to old-growth maintenance. Lessons learned during development underscore the value of early stakeholder engagement, cross-sector collaboration, and balancing diverse ecological objectives. This menu offers a flexible, transferable framework to strengthen climate resilience in PJ woodlands and serves as a model that could improve adaptation planning in other dryland forest ecosystems.

Forests

Mangrove ecosystems: Importance, threats and opportunities for restoration

Mangroves are crucial for biodiversity conservation, coastal protection, and supporting local livelihoods. Mangroves may also protect coasts from storms and rising sea levels and can play a major role in climate mitigation. Threats to their health include activities such as infrastructural development, urban encroachment, aquaculture and crop farming, and oil and gas exploration. We review the threats and opportunities for the restoration of mangrove ecosystems on the coasts of Africa, which are highly impacted by oil spills. The most important challenge for mangrove restoration identified in this review is the restoration of appropriate hydrologic and salinity regimes prior to natural recruitment or the active planting of propagules.

Water

Integration of vegetation classification with land cover mapping: Lessons from regional mapping efforts in the Americas

Aims : Natural resource management and biodiversity conservation rely on inventories of vegetation that span multiple management or political jurisdictions. However, while remote sensing data and analytical tools have enabled production of maps at increasing spatial resolution and reliability, there are limited examples where national or continental-scaled maps are produced to represent vegetation at high thematic detail. We illustrate two examples that have bridged the gap between traditional land cover mapping and modern vegetation classification. Study area : Our two case studies include national ( USA ) and continental (North and South America) vegetation and land cover mapping. These studies span conditions from subpolar to tropical latitudes of the Americas. Methods : Both case studies used a supervised modeling approach with the International Vegetation Classification ( IVC ) to produce maps that provide for greater thematic detail. Georeferenced locations for these vegetation types are used by machine learning algorithms to train a predictive model and generate a distribution map. Results : The USA LANDFIRE (Landscape Fire and Resource Management Planning Tools Project) case study illustrates how a history of vegetation-based classification and availability of key inputs can come together to generate standard map products covering more than 9.8 million km 2 that are unsurpassed anywhere in the world in terms of spatial and thematic resolution. That being said, it also remains clear that mapping at the thematic resolution of the IVC Group and finer resolution require very large and spatially balanced inputs of georeferenced samples. Even with extensive prior data collection efforts, these remain a key limitation. The NatureServe effort for the Americas - encompassing 22% of the global land surface - demonstrates methods and outputs suitable for worldwide application at continental scales. Conclusions : Continued collection of input data used in the case studies could enable mapping at these spatial and thematic resolutions around the globe.

Vegetation Classification and Survey

Where the wild things are: A research agenda for studying wildlife-wilderness relationship

We explore the connection between US designated wilderness areas and wildlife with the goal of establishing a research agenda for better understanding this complex relationship. Our research agenda has two components. The first, “wildlife for wilderness,” considers the impact of wildlife on wilderness character. Whereas studies show that wildlife is important in both the perception and actual enhancement of wilderness character, the context and particulars of this relationship have not been evaluated. For instance, is knowing that a rare, native species is present in a wilderness area enough to increase perceptions of naturalness (an important wilderness quality)? Or does the public need to observe the species or its sign (e.g., tracks) for this benefit? The second part of our research agenda, “wilderness for wildlife,” considers the types of research needed to understand the impact of wilderness areas on wildlife and biodiversity conservation. Several studies show the effect of one area being designated wilderness on one wildlife species. Yet, there has been no research that examines how the networks of wilderness areas in the National Wilderness Preservation System (NWPS) are used by a species or a community of species. Furthermore, we found no studies that focused on how the NWPS affects ecological or trophic interactions among species. We hope that by providing a research agenda, we can spur multiple lines of research on the topic of wildlife and wilderness.

Journal of Forestry

Planning for robust reserve networks using uncertainty analysis

Planning land-use for biodiversity conservation frequently involves computer-assisted reserve selection algorithms. Typically such algorithms operate on matrices of species presence?absence in sites, or on species-specific distributions of model predicted probabilities of occurrence in grid cells. There are practically always errors in input data?erroneous species presence?absence data, structural and parametric uncertainty in predictive habitat models, and lack of correspondence between temporal presence and long-run persistence. Despite these uncertainties, typical reserve selection methods proceed as if there is no uncertainty in the data or models. Having two conservation options of apparently equal biological value, one would prefer the option whose value is relatively insensitive to errors in planning inputs. In this work we show how uncertainty analysis for reserve planning can be implemented within a framework of information-gap decision theory, generating reserve designs that are robust to uncertainty. Consideration of uncertainty involves modifications to the typical objective functions used in reserve selection. Search for robust-optimal reserve structures can still be implemented via typical reserve selection optimization techniques, including stepwise heuristics, integer-programming and stochastic global search.

Ecological Modelling

Response of western mountain ecosystems to climatic variability and change: The Western Mountain Initiative

Mountain ecosystems within our national parks and other protected areas provide valuable goods and services such as clean water, biodiversity conservation, and recreational opportunities, but their potential responses to expected climatic changes are inadequately understood. The Western Mountain Initiative (WMI) is a collaboration of scientists whose research focuses on understanding and predicting responses of western mountain ecosystems to climatic variability and change. It is a legacy of the Global Change Research Program initiated by the National Park Service (NPS) in 1991 and continued by the U.S. Geological Survey (USGS) to this day as part of the U.S. Climate Change Science Program (http://www.climatescience.gov/). All WMI scientists are active participants in CIRMOUNT, and seek to further its goals.

California, Colorado, Montana, New Mexico, Washing

Response of western mountain ecosystems to climatic variability and change: The Western Mountain Initiative

Mountain ecosystems within our national parks and other protected areas provide valuable goods and services such as clean water, biodiversity conservation, and recreational opportunities, but their potential responses to expected climatic changes are inadequately understood. The Western Mountain Initiative (WMI) is a collaboration of scientists whose research focuses on understanding and predicting responses of western mountain ecosystems to climatic variability and change. It is a legacy of the Global Change Research Program initiated by the National Park Service (NPS) in 1991 and continued by the U.S. Geological Survey (USGS) to this day as part of the U.S. Climate Change Science Program (http://www.climatescience.gov/). All WMI scientists are active participants in CIRMOUNT, and seek to further its goals.

Mountain Views

Introduction to watershed ecosystem services: Chapter 1

Humans derive a great number of goods and services from terrestrial ecosystems (Millennium Ecosystem Assessment, 2003, 2005). Some, like timber, fruits, bush meat, and other forest based food stuffs, are evident but others are not so obvious. Increasingly policy makers have realized the importance of forests and other ecosystems in sequestering carbon, as clearing of once vibrant vegetation or draining of swamps releases carbon dioxide (U.S. DOE, 2012) and where planting trees – particularly in the tropics - takes carbon dioxide out of the atmosphere (Bala et al., 2007). Scientists and conservationists have long called our attention to the value of Neotropical landscapes for biodiversity conservation as forests and other ecosystems harbor vast numbers of species. In recent decades conservationists and policy makers have also highlighted the potential of forests and other ecosystems to regulate stream flows (Ibáñez et al., 2002, Laurance, 2007 but also see Calder et al., 2007) and play a role in assuring clean water (Uriarte et al., 2011). All of these goods and services are part of what is collectively referred to as ecosystem services or goods and services that are provided to humanity through the unimpeded natural function of the ecosystem.

Book chapter

The biogeography of threatened insular iguanas and opportunities for invasive vertebrate management

Iguanas are a particularly threatened group of reptiles, with 61% of species at risk of extinction. Primary threats to iguanas include habitat loss, direct and indirect impacts by invasive vertebrates, overexploitation, and human disturbance. As conspicuous, charismatic vertebrates, iguanas also represent excellent flagships for biodiversity conservation. To assist planning for invasive vertebrate management and thus benefit threatened iguana recovery, we identified all islands with known extant or extirpated populations of Critically Endangered and Endangered insular iguana taxa as recognized by the International Union for Conservation of Nature (IUCN) Red List of Threatened Species. For each island, we determined total area, sovereignty, the presence of invasive alien vertebrates, and human population. For the 23 taxa of threatened insular iguanas we identified 230 populations, of which iguanas were extant on 185 islands and extirpated from 45 islands. Twenty-one iguana taxa (91% of all threatened insular iguana taxa) occurred on at least one island with invasive vertebrates present; 16 taxa had 100% of their population(s) on islands with invasive vertebrates present. Rodents, cats, ungulates, and dogs were the most common invasive vertebrates. We discuss biosecurity, eradication, and control of invasive vertebrates to benefit iguana recovery: (1) on islands already free of invasive vertebrates; (2) on islands with high iguana endemicity; and (3) for species and subspecies with small total populations occurring across multiple small islands. Our analyses provide an important first step toward understanding how invasive vertebrate management can be planned effectively to benefit threatened insular iguanas.

Book chapter

Determining climate change management priorities: A case study from Wisconsin

A burgeoning dialogue exists regarding how to allocate resources to maximize the likelihood of long-term biodiversity conservation within the context of climate change. To make effective decisions in natural resource management, an iterative, collaborative, and learning-based decision process may be more successful than a strictly consultative approach. One important, early step in a decision process is to identify priority species or systems. Although this promotes the conservation of select species or systems, it may inadvertently alter the future of non-target species and systems. We describe a process to screen terrestrial wildlife for potential sensitivity to climate change and then use the results to engage natural resource professionals in a process of identifying priorities for monitoring, research, and adaptation strategy implementation. We demonstrate this approach using a case study from Wisconsin. In Wisconsin, experts identified 23 out of 353 species with sufficient empirical research and management understanding to inform targeted action. Habitat management and management of hydrological conditions were the common strategies for targeted action. Although there may be an interest in adaptation strategy implementation for many species and systems, experts considered existing information inadequate to inform targeted action. According to experts, 40% of the vertebrate species in Wisconsin will require near-term intervention for climate adaptation. These results will inform state-wide conservation planning as well as regional efforts.

Wisconsin

Enhanced between-site biosecurity to minimize herpetofaunal disease-causing pathogen transmission

Pathogens and their associated diseases have the potential to severely affect wildlife populations, including herpetofauna. Concern is increasing for transmission pathways of herpetofaunal diseases, especially for amphibians affected by the fungal pathogens Batrachochytrium dendrobatidis (Bd: Longcore et al. 1999) and B. salamandrivorans (Bsal: Martel et al. 2013), and amphibians and reptiles affected by Iridoviruses of the genus Ranavirus (Rv: Gray and Chinchar 2015) for which global human-mediated pathogen transmission is increasingly implicated (e.g., Fisher and Garner 2007; Picco and Collins 2008; Walker et al. 2008; Schloegel et al. 2009; Auliya et al. 2016; Martel et al. 2013, 2014; Fisher et al. 2012; Nguyen et al. 2017; O’Hanlon et al. 2018). Preventing the novel introductions of emerging infectious diseases is of paramount importance (Gray et al. 2015; Grant et al. 2016), as once they gain a foothold, they can be “essentially unstoppable” (Fisher et al. 2012). In order to minimize anthropogenic influences on disease dynamics, biosecurity procedures and decision-support systems for biosecurity prioritization have been developed. In general, such procedures for herpetofaunal emerging infectious diseases have been framed relative to the stages of pathogen emergence (pre-arrival, invasion front, epidemic, and establishment: e.g., Garner et al. 2016; Grant et al. 2017) as well as the intertwining contexts of herpetological research, natural resource management activities, integrated biodiversity conservation practices, and the human dimension of transmission of novel pathogens, (e.g., Gray et al. 2018; More et al. 2018).

Herpetological Review

Using biodiversity metrics to guide conservation planning in altered tropical landscapes

Biodiversity metrics are frequently used to guide conservation planning because they can summarize biogeographical attributes of plant and animal communities quickly and at multiple scales. Attributes include habitat features of high conservation value, representativeness, and redundancy of biological communities. We conducted a rapid ecological assessment of resident avian species in the west-central mountainous region of Puerto Rico in 2015, a landscape dominated by coffee cultivation. We focused on this landscape because shade-grown and restored shade-grown coffee plantations offer an opportunity to complement protected habitat (e.g., reserves) to enhance species persistence. We used species richness, which tallies the number of unique species, and a quadratic entropy index of diversity, which incorporates interspecific taxonomic differentiation to evaluate species representativeness and redundancy across sun- and shade-grown coffee plantations and secondary forest. We surveyed 120 sites, calculating both metrics using species-specific occupancy probabilities estimated from community-level occupancy models. Species representativeness and redundancy were high as neither metric was able to discriminate among habitat types, possibly because plant communities were redundant, and the avian community was dominated by species adept at exploiting altered habitats. Similarly, we could not discriminate among avian communities modeling each biodiversity metric as a function of site-specific habitat covariates. Our findings and available knowledge on avian community demographics suggest that conservation strategies could couple protected habitat (e.g., reserves) and restored habitat (e.g., coffee plantations) to enhance species diversity and persistence across human-modified landscapes.

Caribbean Naturalist

Evaluating spatial coverage of the greater sage-grouse umbrella to conserve sagebrush-dependent species biodiversity within the Wyoming basins

Biodiversity is threatened due to land-use change, overexploitation, pollution, and anthropogenic climate change, altering ecosystem functioning around the globe. Protecting areas rich in biodiversity is often difficult without fully understanding and mapping species’ ecological niche requirements. As a result, the umbrella species concept is often applied, whereby conservation of a surrogate species is used to indirectly protect species that occupy similar ecological communities. One such species is the greater sage-grouse ( Centrocercus urophasianus ), which has been used as an umbrella to conserve other species within the sagebrush ( Artemisia spp.) ecosystem. Sagebrush-steppe ecosystems within the United States have experienced drastic loss, fragmentation, and degradation of remaining habitat, threatening sagebrush-dependent fauna, resulting in west-wide conservation efforts to protect sage-grouse habitats, and presumably other sagebrush wildlife. We evaluated the effectiveness of the greater sage-grouse umbrella to conserve biodiversity using data-driven spatial occupancy and abundance models for seven sagebrush-dependent (obligate or associated) species across the greater Wyoming Basins Ecoregional Assessment (WBEA) area (345,300 km 2 ) and assessed overlap with predicted sage-grouse occurrence. Predicted sage-grouse habitat from empirical models only partially (39–58%) captured habitats identified by predicted occurrence models for three sagebrush-obligate songbirds and 60% of biodiversity hotspots (richness of 4–6 species). Sage-grouse priority areas for conservation only captured 59% of model-predicted sage-grouse habitat, and only slightly fewer (56%) biodiversity hotspots. We suggest that the greater sage-grouse habitats may be partially effective as an umbrella for the conservation of sagebrush-dependent species within the sagebrush biome, and management actions aiming to conserve biodiversity should directly consider the explicit mapping of resource requirements for other taxonomic groups.

Land

Biodiversity losses and conservation trade-offs: Assessing future urban growth scenarios for a North American trade corridor

The Sonoran Desert and Apache Highlands ecoregions of North America are areas of exceptionally high plant and vertebrate biodiversity. However, much of the vertebrate biodiversity is supported by only a few vegetation types with limited distributions, some of which are increasingly threatened by changing land uses. We assessed the impacts of two future urban growth scenarios on biodiversity in a binational watershed in Arizona, USA and Sonora, Mexico. We quantified and mapped terrestrial vertebrate species richness using Wildlife Habitat Relation models and validated the results with data from National Park Service biological inventories. Future urban growth, based on historical trends, was projected to the year 2050 for 1) a “Current Trends” scenario and, 2) a “Megalopolis” scenario that represented a transnational growth corridor with open-space conservation attributes. Based on Current Trends, 45% of existing riparian woodland (267 of 451species), and 34% of semi-desert grasslands (215 of 451 species) will be lost, whereas, in the Megalopolis scenario, these types would decline by 44% and 24% respectively. Outcomes of the two models suggest a trade-off at the taxonomic class level: Current Trends would reduce and fragment mammal and herpetofauna habitat, while Megalopolis would result in loss of avian-rich riparian habitat.

International Journal of Biodiversity Science, Eco

Next‐generation conservation genetics and biodiversity monitoring

This special issue of Evolutionary Applications consists of 10 publications investigating the use of next‐generation tools and techniques in population genetic analyses and biodiversity assessment. The special issue stems from a 2016 Next Generation Genetic Monitoring Workshop, hosted by the National Institute for Mathematical and Biological Synthesis (NIMBioS) in Tennessee, USA. The improved accessibility of next‐generation sequencing platforms has allowed molecular ecologists to rapidly produce large amounts of data. However, with the increased availability of new genomic markers and mathematical techniques, care is needed in selecting appropriate study designs, interpreting results in light of conservation concerns, and determining appropriate management actions. This special issue identifies key attributes of successful genetic data analyses in biodiversity evaluation and suggests ways to improve analyses and their application in current population and conservation genetics research.

Evolutionary Applications