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USGS1986

Development and evaluation of habitat suitability criteria for use in the instream flow incremental methodology

The Instream Flow Incremental Methodology (IFIM) is a habitat-based tool used to evaluate the environmental consequences of various water and land use practices. As such, knowledge about the conditions that provide favorable habitat for a species, and those that do not, is necessary for successful implementation of the methodology. In the context of IFIM, this knowledge is defined as habitat suitability criteria: characteristic behavioral traits of a species that are established as standards for comparison in the decision-making process. Habitat suitability criteria may be expressed in a variety of types and formats. The type, or category, refers to the procedure used to develop the criteria. Category I criteria are based on professional judgment, with little or no empirical data. Category II criteria have as their source, microhabitat data collected at locations where target organisms are observed or collected. These are called “utilization” functions because they are based on observed locations that were used by the target organism. These functions tend to be biased by the environmental conditions that were available to the fish or invertebrates at the time they were observed. Correction of the utilization function for environmental availability creates category III, or “preference” criteria, which tend to be much less site specific than category II criteria. There are also several ways to express habitat suitability in graphical form. The binary format establishes a suitable range for each variable as it pertains to a life stage of interest, and is presented graphically as a step function. The quality rating for a variable is 1.0 if it falls within the range of the criteria, and 0.0 if it falls outside the range. The univariate curve format established both the usable range and the optimum range for each variable, with conditions of intermediate usability expressed along the portion between the tails and the peak of the curve. Multivariate probability density functions, which can be used to compute suitability for several variables simultaneously, are conveyed as three dimensional figures with suitability on the z-axis, and two independent variables on the x-y plane. These functions are useful for incorporating interactive terms between two or more variable. Such interactions can also be demonstrated using conditional criteria, which are stratified by cover type or substrate size. Conditional criteria may be of any category or format, but are distinguishable by two or more sets of functional relationships for each life stage.

Report↗

USGS2012

A new basaltic glass microanalytical reference material for multiple techniques

The U.S. Geological Survey (USGS) has been producing reference materials since the 1950s. Over 50 materials have been developed to cover bulk rock, sediment, and soils for the geological community. These materials are used globally in geochemistry, environmental, and analytical laboratories that perform bulk chemistry and/or microanalysis for instrument calibration and quality assurance testing. To answer the growing demand for higher spatial resolution and sensitivity, there is a need to create a new generation of microanalytical reference materials suitable for a variety of techniques, such as scanning electron microscopy/X-ray spectrometry (SEM/EDS), electron probe microanalysis (EPMA), laser ablation inductively coupled mass spectrometry (LA-ICP-MS), and secondary ion mass spectrometry (SIMS). As such, the microanalytical reference material (MRM) needs to be stable under the beam, be homogeneous at scales of better than 10–25 micrometers for the major to ultra-trace element level, and contain all of the analytes (elements or isotopes) of interest. Previous development of basaltic glasses intended for LA-ICP-MS has resulted in a synthetic basaltic matrix series of glasses (USGS GS-series) and a natural basalt series of glasses (BCR-1G, BHVO-2G, and NKT-1G). These materials have been useful for the LA-ICP-MS community but were not originally intended for use by the electron or ion beam community. A material developed from start to finish with intended use in multiple microanalytical instruments would be useful for inter-laboratory and inter-instrument platform comparisons. This article summarizes the experiments undertaken to produce a basalt glass reference material suitable for distribution as a multiple-technique round robin material. The goal of the analytical work presented here is to demonstrate that the elemental homogeneity of the new glass is acceptable for its use as a reference material. Because the round robin exercise is still underway, only nominal compositional ranges for each element are given in the article.

Microscopy Today↗

USGS1993

Preliminary results of a helicopter electromagnetic and magnetic survey of the Oak Ridge Reservation, Tennessee for environmental and geologic site characterization

The 35,252 -acre Oak Ridge Reservation (ORR), in the western portion of the Appalachian Valley and Ridge province in Tennessee, has been a nuclear production and development facility for 50 years. Contaminants in the many waste sites on the ORR include heavy radioactive isotopes as well as many organic and inorganic compounds. The locations, geometry, and contents of many of these waste sites are reasonably well known, while others are poorly known, and some may be unknown. To better characterize the known sites and locate and characterize additional environmentally hazardous sites, a two-phase aerial survey of the ORR was begun in April, 1992. Phase I, which began in April, 1992, consisted of aerial radiation, multispectral scanner, and photographic surveys. Phase II, which began in November, 1992 and is described in this presentation, consisted of a helicopter electromagnetic (HEM), magnetic, and radiation survey. Targets of the survey were both man-made (drums, trench boundaries, burn pits, well heads) and geologic (fractures, faults, karst features, geologic contacts). The Phase II survey has three components: testing, reconnaissance, and high-resolution data acquisition. To date, the testing and reconnaissance data acquisition have been completed, and part of the data have been processed. They indicate that: 1) magnetic and HEM data are complementary, and do not always highlight the same anomaly; 2) under favorable circumstances, helicopter magnetometer systems are capable of detecting groups of 4 or more 55-gallon drums at detector altitudes of 15 m or less, 3) HEM data provide data which compare favorably with surface data collected over burial trenches, 4) well casings seem to be related to magnetic monopole anomalies, as would be expected, 5) Changes in EM and magnetic anomaly character are related to lithologic changes and might be used to track contacts between known outcrops.

Tennessee↗

USGS1990

Effects of boron on growth and physiology in mallard ducklings

High concentrations of boron (B) have been associated with irrigation drainwater and aquatic plants consumed by waterfowl. Day-old mallard ( Anas platyrhynchos ) ducklings received an untreated diet (controls) or diets containing 100, 400 or 1,600 ppm B as boric acid. Survival, growth and food consumption were measured for 10 weeks. At termination, blood and tissue samples were collected for biochemical assays and histological examination. The highest dietary concentration of B caused 10% mortality, decreased overall growth and the rate of growth (sexes combined), whereas lower concentrations of B altered growth only in females. Food consumption was lower during the first 3 weeks in the 1,600-ppm group and during the second week in all B-treated groups compared to controls. Hematocrit and hemoglobin were lower and plasma calcium concentration higher in the 1,600-ppm group compared to controls. Plasma triglyceride concentration was elevated in all B-treated groups. Brain B concentration increased to 25 times that of controls in the 1,600-ppm group. Brain ATP decreased with increasing dietary B. Brain acetylcholinesterase activity and total ATPase activity (in males) were elevated and protein concentration lowered in the 1,600-ppm group. Boron accumulated less in the liver than in the brain but resulted in an initial elevation of hepatic glutathione. These findings, in combination with altered duckling behavior, suggest that concentrations of B occurring in aquatic plants could adversely affect normal duckling development.

Environmental Toxicology and Chemistry↗

USGS1990

Effects of arsenate on growth and physiology in mallard ducklings

Arsenic (As) has been found at elevated concentrations in irrigation drainwater and in aquatic plants utilized by waterfowl. Mallard ( Anas platyrhynchos ) ducklings received an untreated diet (controls) or diets containing 30, 100 or 300 ppm As added as sodium arsenate. After 10 weeks blood and tissue samples were collected for biochemical and histological examination. Arsenic accumulated significantly in brain and liver of ducklings fed 100 or 300 ppm but did not result in histopathological lesions. The 300-ppm dietary As concentration decreased overall growth (weight gain) in males, whereas all concentrations of As decreased overall growth and rate of growth in females. Food consumption was less during the first three weeks in the 300-ppm group and during the second week for the 100-ppm group compared to controls. Plasma sorbitol dehydrogenase activity and plasma glucose concentration were higher in the 300-ppm group compared to controls. Plasma triglyceride concentration increased in all As-treated groups. Brain ATP was lower in the 300-ppm group and sodium/potassium-dependent ATPase activity was higher in the 30- and 100-ppm groups. Hepatic glutathione peroxidase activity was lower in the 300-ppm group and malondialdehyde lower in all treatment groups. All treatment levels caused elevation in hepatic glutathione and ATP concentrations. These findings, in combination with altered duckling behavior (increased resting time), suggest that concentrations of As that have been found in aquatic plants (up to 430 ppm dry weight) could adversely affect normal duckling development.

Environmental Toxicology and Chemistry↗

USGS2011

U.S. Department of Energy's regional carbon sequestration partnership initiative: Update on validation and development phases

The U.S. Department of Energy (DOE) is the lead federal agency for the development and deployment of carbon sequestration technologies. The Regional Carbon Sequestration Partnerships (RCSPs) are the mechanism DOE utilizes to prove the technology and to develop human capital, stakeholder networks, information for regulatory policy, best practices documents and training to work toward the commercialization of carbon capture and storage (CCS). The RCSPs are tasked with determining the most suitable technologies, regulations, and infrastructure for carbon capture, transport, and storage in their respective geographic areas of responsibility. The seven partnerships include more than 400 state agencies, universities, national laboratories, private companies, and environmental organizations, spanning 43 states and four Canadian provinces. The Regional Partnerships Initiative is being implemented in three phases: Characterization, Validation, and Development. The initial Characterization Phase began in 2003 and was completed in 2005 and focused on characterization of CO2 storage potential within each region. It was followed by the Validation Phase, which began in 2005 and is nearing completion in 2011. The focus of the Validation Phase has been on small-scale field tests throughout the seven partnerships in various formation types such as saline, oil-bearing, and coal seams. The Validation Phase has characterized suitable CO2 storage reservoirs and identified the need for comprehensive legal and regulatory frameworks to enable commercial-scale CCS deployment. Finally, the Development Phase will consist of a series of large-scale, one-million-ton, injection tests throughout the United States and Canada. The objective of these large-scale tests is to identify the regulatory path or challenges in permitting CCS projects, to demonstrate the technology can inject CO2 safely, and to verify its permanence in geologic formations in preparation for the commercialization of geologic sequestration. ?? 2010 Elsevier Ltd. All rights reserved. ?? 2011 Published by Elsevier Ltd.

Conference Paper↗

USGS2021

Late Holocene environmental change in Celestun Lagoon, Yucatan, Mexico

Epikarst estuary response to hydroclimate change remains poorly understood, despite the well-studied link between climate and karst groundwater aquifers. The influence of sea-level rise and coastal geomorphic change on these estuaries obscures climate signals, thus requiring careful development of paleoenvironmental histories to interpret the paleoclimate archives. We used foraminifera assemblages, carbon stable isotope ratios (δ 13 C) and carbon:nitrogen (C:N) mass ratios of organic matter in sediment cores to infer environmental changes over the past 5300 years in Celestun Lagoon, Yucatan, Mexico. Specimens (> 125 µm) from modern core top sediments revealed three assemblages: (1) a brackish mangrove assemblage of agglutinated Miliammina and Ammotium taxa and hyaline Haynesina (2) an inner-shelf marine assemblage of Bolivina , Hanzawaia , and Rosalina, and (3) a brackish assemblage dominated by Ammonia and Elphidium . Assemblages changed along the lagoon channel in response to changes in salinity and vegetation, i.e. seagrass and mangrove. In addition to these three foraminifera assemblages, lagoon sediments deposited since 5300 cal yr BP are comprised of two more assemblages, defined by Archaias and Laevipeneroplis, which indicate marine Thalassia seagrasses, and Trichohyalus, which indicates restricted inland mangrove ponds. Our data suggest that Celestun Lagoon displayed four phases of development: (1) an inland mangrove pond (5300 BP) (2) a shallow unprotected coastline with marine seagrass and barrier island initiation (4900 BP) (3) a protected brackish lagoon (3000 BP), and (4) a protected lagoon surrounded by mangroves (1700 BP). Stratigraphic (temporal) changes in core assemblages resemble spatial differences in communities across the modern lagoon, from the southern marine sector to the northern brackish region. Similar temporal patterns have been reported from other Yucatan Peninsula lagoons and from cenotes (Nichupte, Aktun Ha), suggesting a regional coastal response to sea level rise and climate change, including geomorphic controls (longshore drift) on lagoon salinity, as observed today. Holocene barrier island development progressively protected the northwest Yucatan Peninsula coastline, reducing mixing between seawater and rain-fed submarine groundwater discharge. Superimposed on this geomorphic signal, assemblage changes that are observed reflect the most severe regional wet and dry climate episodes, which coincide with paleoclimate records from lowland lake archives (Chichancanab, Salpeten). Our results emphasize the need to consider coastal geomorphic evolution when using epikarst estuary and lagoon sediment archives for paleoclimate reconstruction and provide evidence of hydroclimate changes on the Yucatan Peninsula.

Yucatan, Celestun Lagoon↗

USGS2008

An integrated approach to assess broad-scale condition of coastal wetlands - The Gulf of Mexico Coastal Wetlands pilot survey

The Environmental Protection Agency (EPA) and U.S. Geological Survey (USGS) initiated a two-year regional pilot survey in 2007 to develop, test, and validate tools and approaches to assess the condition of northern Gulf of Mexico (GOM) coastal wetlands. Sampling sites were selected from estuarine and palustrine wetland areas with herbaceous, forested, and shrub/scrub habitats delineated by the US Fish and Wildlife Service National Wetlands Inventory Status and Trends (NWI S&T) program and contained within northern GOM coastal watersheds. A multi-level, stepwise, iterative survey approach is being applied to multiple wetland classes at 100 probabilistically-selected coastal wetlands sites. Tier 1 provides information at the landscape scale about habitat inventory, land use, and environmental stressors associated with the watershed in which each wetland site is located. Tier 2, a rapid assessment conducted through a combination of office and field work, is based on best professional judgment and on-site evidence. Tier 3, an intensive site assessment, involves on-site collection of vegetation, water, and sediment samples to establish an integrated understanding of current wetland condition and validate methods and findings from Tiers 1 and 2. The results from this survey, along with other similar regional pilots from the Mid-Atlantic, West Coast, and Great Lakes Regions will contribute to a design and implementation approach for the National Wetlands Condition Assessment to be conducted by EPA's Office of Water in 2011. ?? Springer Science+Business Media B.V. 2008.

Conference Paper↗

USGS2025

High-throughput screening identifies bisphenol P as a potent cardiotoxin, inducing cardiotoxicity through apoptosis and NF-κB Pathway

The increasing use of plastic additives, particularly bisphenols (BPs), has raised significant concerns about their potential risks to human health, especially during critical developmental stages. In this study, we developed a novel high-throughput toxicity screening platform using zebrafish ( Danio rerio ) to identify and prioritize chemicals with cardiotoxic potential, which is based on multidimensional exposure pathways ranging from environmental to human levels. The platform quantitatively assesses heart rate changes based on multilevel exposure pathways (environmental, ecological, and human), effectively prioritizing the most relevant cardiotoxic compounds with potential health risks. Using this platform, we identified bisphenol P (BPP), a widely used substitute for bisphenol A, as a potent cardiotoxic compound. BPP exposure significantly inhibited heart development and function in zebrafish, inducing abnormal heart morphology, reduced heart rate, cardiac output, and hemodynamic disturbances. Additionally, NF-κB signaling pathway analysis, including morpholino knock-down and inhibitor experiments, confirmed that BPP mediates cardiac toxicity by inducing cardiomyocyte apoptosis. Our findings underscore the toxicity that BP substitutes can have, while highlighting the potential of this multidimensional screening platform in evaluating cardiovascular toxicity and guiding future toxicological assessments during critical developmental windows.

Environmental Science & Technology↗

USGS2003

Infectivity and pathogenicity of the oomycete Aphanomyces invadans in Atlantic menhaden Brevoortia tyrannus

Atlantic menhaden Brevoortia tyrannus develop characteristic skin ulcers in response to infection by the oomycete Aphanomyces invadans . To investigate pathogenicity , we conducted a dose response study. Juvenile menhaden were inoculated subcutaneously with 0, 1, 5, 10, 100, and 500 secondary zoospores per fish and monitored for 37 d post-injection (p.i.). Survival rates declined with increasing zoospore dose, with significantly different survivorship curves for the different doses. Moribund and dead fish exhibited characteristic ulcerous lesions at the injection site starting at 13 d p.i. None of the sham-injected control fish (0 zoospore treatment) died. The LD 50 (lethal dose killing 50% of exposed menhaden ) for inoculated fish was estimated at 9.7 zoospores; however, some fish receiving an estimated single zoospore developed infections that resulted in death. Menhaden were also challenged by aqueous exposure and confirmed that A. invadans was highly pathogenic by this more environmentally realistic route. Fish that were acclimated to culture conditions for 30 d, and presumably free of skin damage, then aqueously exposed to 100 zoospores ml -1 , exhibited 14% lesion prevalence with 11% mortality. Net-handled fish that were similarly infected had a significantly higher lesion prevalence (64%) and mortality (64%). Control fish developed no lesions and did not die. Scanning electron microscopy of fish skin indicated that zoospores adhered to intact epidermis, germinated and penetrated the epithelium with a germ tube. Our results indicate that A. invadans is a primary pathogen of menhaden and is able to cause disease at very low zoospore concentrations.

Diseases of Aquatic Organisms↗

USGS2015

Activity-specific ecological niche models for planning reintroductions of California condors (Gymnogyps californianus)

Ecological niche models can be a useful tool to identify candidate reintroduction sites for endangered species but have been infrequently used for this purpose. In this paper, we (1) develop activity-specific ecological niche models (nesting, roosting, and feeding) for the critically endangered California condor ( Gymnogyps californianus ) to aid in reintroduction planning in California, Oregon, and Washington, USA, (2) test the accuracy of these models using empirical data withheld from model development, and (3) integrate model results with information on condor movement ecology and biology to produce predictive maps of reintroduction site suitability. Our approach, which disentangles niche models into activity-specific components, has applications for other species where it is routinely assumed (often incorrectly) that individuals fulfill all requirements for life within a single environmental space. Ecological niche models conformed to our understanding of California condor ecology, had good predictive performance when tested with data withheld from model development, and aided in the identification of several candidate reintroduction areas outside of the current distribution of the species. Our results suggest there are large unoccupied regions of the California condor’s historical range that have retained ecological features similar to currently occupied habitats, and thus could be considered for future reintroduction efforts. Combining our activity-specific ENMs with ground reconnaissance and information on other threat factors that could not be directly incorporated into empirical ENMs will ultimately improve our ability to select successful reintroduction sites for the California condor.

California, Oregon, Washington↗

USGS2012

Estimating risks to aquatic life using quantile regression

One of the primary goals of biological assessment is to assess whether contaminants or other stressors limit the ecological potential of running waters. It is important to interpret responses to contaminants relative to other environmental factors, but necessity or convenience limit quantification of all factors that influence ecological potential. In these situations, the concept of limiting factors is useful for data interpretation. We used quantile regression to measure risks to aquatic life exposed to metals by including all regression quantiles (τ = 0.05–0.95, by increments of 0.05), not just the upper limit of density (e.g., 90 th quantile). We measured population densities (individuals/0.1 m 2 ) of 2 mayflies (Rhithrogena spp., Drunella spp.) and a caddisfly (Arctopsyche grandis), aqueous metal mixtures (Cd, Cu, Zn), and other limiting factors (basin area, site elevation, discharge, temperature) at 125 streams in Colorado. We used a model selection procedure to test which factor was most limiting to density. Arctopsyche grandis was limited by other factors, whereas metals limited most quantiles of density for the 2 mayflies. Metals reduced mayfly densities most at sites where other factors were not limiting. Where other factors were limiting, low mayfly densities were observed despite metal concentrations. Metals affected mayfly densities most at quantiles above the mean and not just at the upper limit of density. Risk models developed from quantile regression showed that mayfly densities observed at background metal concentrations are improbable when metal mixtures are at US Environmental Protection Agency criterion continuous concentrations. We conclude that metals limit potential density, not realized average density. The most obvious effects on mayfly populations were at upper quantiles and not mean density. Therefore, we suggest that policy developed from mean-based measures of effects may not be as useful as policy based on the concept of limiting factors.

Colorado↗

USGS2021

Comparing sample bias correction methods for species distribution modeling using virtual species

A key assumption in species distribution modeling (SDM) with presence‐background (PB) methods is that sampling of occurrence localities is unbiased and that any sampling bias is proportional to the background distribution of environmental covariates. This assumption is rarely met when SDM practitioners rely on federated museum records from natural history collections for geo‐located occurrences due to inherent sampling bias found in these collections. We use a simulation approach to explore the effectiveness of three methods developed to account for sampling bias in SDM with PB frameworks. Two of the methods rely on careful filtering of observation data—geographic thinning (G‐Filter) and environmental thinning (E‐Filter)—while a third, FactorBiasOut, creates selection weights for background data to bias locations toward areas where the observation dataset was sampled. While these methods have been assessed previously, evaluation has emphasized spatial predictions of habitat potential. Here, we dig deeper into the effectiveness of these methods by exploring how sampling bias not only affects predictions of habitat potential, but also our understanding of niche characteristics such as which explanatory variables and response curves best represent species–environment relationships. We simulate 100 virtual species ranging from generalist to specialist in their habitat preferences and introduce geographic and environmental bias at three intensity levels to measure the effectiveness of each correction method to (1) predict true probability of occurrence across a study area, (2) recover true species–environment relationships, and (3) identify true explanatory variables. We find that the FactorBiasOut most often showed the greatest improvement in recreating known distributions but did no better at correctly identifying environmental covariates or recreating species–environment relationships than G‐Filter or E‐Filter methods. Narrow niche species are most problematic for biased calibration datasets, such that correction methods can, in some cases, make predictions worse.

Ecosphere↗

USGS2002

The consequences of landscape change on ecological resources: An assessment of the United States mid-Atlantic region, 1973-1993

Spatially explicit identification of changes in ecological conditions over large areas is key to targeting and prioritizing areas for environmental protection and restoration by managers at watershed, basin, and regional scales. A critical limitation to this point has been the development of methods to conduct such broad-scale assessments. Field-based methods have proven to be too costly and too inconsistent in their application to make estimates of ecological conditions over large areas. New spatial data derived from satellite imagery and other sources, the development of statistical models relating landscape composition and pattern to ecological endpoints, and geographic information systems (GIS) make it possible to evaluate ecological conditions at multiple scales over broad geographic regions. In this study, we demonstrate the application of spatially distributed models for bird habitat quality and nitrogen yield to streams to assess the consequences of landcover change across the mid-Atlantic region between the 1970s and 1990s. Moreover, we present a way to evaluate spatial concordance between models related to different environmental endpoints. Results of this study should help environmental managers in the mid-Atlantic region target those areas in need of conservation and protection.

Ecosystem Health↗

USGS2016

Nuclear and mitochondrial DNA analyses of golden eagles (Aquila chrysaetos canadensis) from three areas in western North America; initial results and conservation implications

Understanding the genetics of a population is a critical component of developing conservation strategies. We used archived tissue samples from golden eagles ( Aquila chrysaetos canadensis ) in three geographic regions of western North America to conduct a preliminary study of the genetics of the North American subspecies, and to provide data for United States Fish and Wildlife Service (USFWS) decision-making for golden eagle management. We used a combination of mitochondrial DNA (mtDNA) D-loop sequences and 16 nuclear DNA (nDNA) microsatellite loci to investigate the extent of gene flow among our sampling areas in Idaho, California and Alaska and to determine if we could distinguish birds from the different geographic regions based on their genetic profiles. Our results indicate high genetic diversity, low genetic structure and high connectivity. Nuclear DNA Fst values between Idaho and California were low but significantly different from zero (0.026). Bayesian clustering methods indicated a single population, and we were unable to distinguish summer breeding residents from different regions. Results of the mtDNA AMOVA showed that most of the haplotype variation (97%) was within the geographic populations while 3% variation was partitioned among them. One haplotype was common to all three areas. One region-specific haplotype was detected in California and one in Idaho, but additional sampling is required to determine if these haplotypes are unique to those geographic areas or a sampling artifact. We discuss potential sources of the high gene flow for this species including natal and breeding dispersal, floaters, and changes in migratory behavior as a result of environmental factors such as climate change and habitat alteration. Our preliminary findings can help inform the USFWS in development of golden eagle management strategies and provide a basis for additional research into the complex dynamics of the North American subspecies.

Alaska, California, Idaho, Oregon↗

USGS2022

Development of a ddPCR assay for the detection of the Smoky Madtom (Noturus baileyi) from eDNA in stream water samples

The Smoky Madtom Noturus baileyi is a federally endangered species, whose native distribution includes lower Abrams Creek in Great Smoky Mountains National Park (GRSM) and Citico Creek in nearby Cherokee National Forest. Due to challenges for bio-monitoring posed by its nocturnality and cryptic life history, an environmental DNA (eDNA)-based approach for detection would be useful to complement existing electrofishing and seining efforts to better understand the distribution of this species. We developed a probe-based droplet digital PCR (ddPCR) assay to detect Smoky Madtoms from non-invasively collected water samples. The assay was specific to N. baileyi and did not amplify concentrated genomic DNA of 16 co-occurring or regional fish species, including the yellowfin madtom N. flavipinnis and stonecat N. flavus . The assay limit of detection (LOD) was determined to be 4.18 copies (95% CI: 3.95, 4.41). Several 2 L water samples collected from throughout various streams in GRSM in 2016 and 2017 were tested for the presence of N. baileyi using the ddPCR assay. N. baileyi was detected at two different sites in 2016 and 2017 within Abrams Creek previously known to contain N. baileyi , but no novel detections in other sampled streams were observed. This assay should prove useful for continued surveys of N. baileyi in GRSM.

Great Smoky Mountains National Park↗

USGS2019

In vivo effects of 17α-ethinylestradiol, 17B-estradiol and 4-nonylphenol on insulin-like growth-factor binding proteins (igfbps) in Atlantic salmon

Feminizing endocrine disrupting compounds (EDCs) affect the growth and development of teleost fishes. The major regulator of growth performance, the growth hormone (Gh)/insulin-like growth-factor (Igf) system, is sensitive to estrogenic compounds and mediates certain physiological and potentially behavioral consequences of EDC exposure. Igf binding proteins (Igfbps) are key modulators of Igf activity, but their alteration by EDCs has not been examined. We investigated two life-stages (fry and smolts) of Atlantic salmon ( Salmo salar ), and characterized how the Gh/Igf/Igfbp system responded to waterborne 17α-ethinylestradiol (EE 2 ), 17β-estradiol (E 2 ) and 4-nonylphenol (NP). Fry exposed to EE 2 and NP for 21 days had increased hepatic vitellogenin ( vtg ) mRNA levels while hepatic estrogen receptor α ( erα ), gh receptor (ghr) , igf1 and igf2 mRNA levels were decreased. NP-exposed fry had reduced body mass and total length compared to controls. EE 2 and NP reduced hepatic igfbp1b1 , -2a , -2b1 , -4 , -5b2 and -6b1 , and stimulated igfbp5a . In smolts, hepatic vtg mRNA levels were induced following 4-day exposures to all three EDCs, while erα only responded to EE 2 and E 2 . EDC exposures did not affect body mass or fork length; however, EE 2 diminished plasma Gh and Igf1 levels in parallel with reductions in hepatic ghr and igf1 . In smolts, EE 2 and E 2 diminished hepatic igfbp1b1 , -4 and -6b1 , and stimulated igfbp5a . There were no signs of compromised ionoregulation in smolts, as indicated by unchanged branchial ion pump/transporter mRNA levels. We conclude that hepatic igfbps respond (directly and/or indirectly) to environmental estrogens during two key life-stages of Atlantic salmon, and thus may modulate the growth and development of exposed individuals.

Aquatic Toxicology↗

USGS2020

Looking forward, looking back: Building resilience today community report: Kotlik, AK

The Alaska Climate Adaptation Science Center (AK CASC), in partnership with the Aleutian Pribilof Islands Association (APIA), designed the Looking Forward, Looking Back: Building Resilience Today (hereafter ‘BRT’) project as a series of trainings and workshops with tribal community leadership and members. The overarching goal of the project was to collaboratively develop the Indigenous knowledge and western science knowledge for adaptation planning. We worked with five community teams consisting of up to four leaders from communities that chose to participate in the project: Iliamna, Kotlik, Kwigillingok, Quinhagak, and St. Michael. Community teams were developed through the application process and the project duration. Community teams were encouraged to have involvement from multiple governing bodies within the community that could include the Tribal Council, the city governments, and the village corporations. The project title, with its references to the future (Looking Forward), past (Looking Back), and present (Building Resil- ience Today), refers to the idea that adaptation planning relies on all three perspectives. Equally important, however, is the dialogue to exchange past and present information, context, and what we expect in the future. Accordingly, two training sessions held at the International Arctic Research Center in Fairbanks, Alaska at the beginning and near the end of the project were developed to provide community team interaction with each other and with university and feder- al science partners. The project team also traveled to the partner communities and held a series of onsite events with community members to document locally-relevant information and share climate science tailored to the needs and conditions of each community. This report represents the community information shared during those onsite events. The Meeting Announcement (page 5) shows the date and description of the outreach events. The purpose of these events was to: 1) facilitate mapping of a Traditional Use Area to refine an area for climate projec- tions; 2) construct current and past seasonal Subsistence Calendars to identify important species and times of the year; 3) document Indigenous and local knowledge from current community members about environmental changes they have observed over their lifetimes; and 4) assist with documenting what the community perceived to be climate-relat- ed issues through photos and interviews. The agenda of the visits was co-produced with the community team. In each community, the community team and the project team co-hosted an open-to-the-public meeting and met with various groups. The community team advertised the meetings by posting community fliers, making announcements on the community radio, and reaching out to individuals that would contribute to the engagement discussions. Each commu- nity meeting focused on activities to develop seasonal Subsistence Calendars, map Traditional Use Areas, and document observed environmental changes. Community members spent time at stations dedicated to each of these activities working with project team members. The project team also met with various groups of individuals that included village corporation, tribal council, and city representatives where additional information about observed environmental chang- es was gathered. This community report presents some of the information developed in these activities.

Alaska↗