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At least 1,405 records · Page 78Linked to original sources

USGS2000

Role of lake regulation on glacier fed rivers in enhancing salmon productivity: The Cook Inlet watershed south central Alaska, USA

Rivers fed by glaciers constitute a major part of the freshwater runoff into the Cook Inlet basin of south-central Alaska. This basin is very important to the economy of the State of Alaska because it is home to more than half of the population and it supports multi-million dollar commercial, subsistence and sport fisheries. Hence an understanding of how glacial runoff influences biological productivity is important for managing rivers that drain into Cook Inlet. This paper examines the ways in which the regulation of glacier-fed rivers by proglacial lakes affects salmon productivity, with particular reference to the Kenai River. Salmon escapement per unit channel length on the Kenai River is between two and ten times that found for rain-and-snowmelt dominated rivers and glacier-fed rivers lacking lake regulation. Lakes are shown to influence biological processes in glacier-fed rivers by attenuating peak flows, sustaining high flows throughout the summer, supplementing winter low flows, settling suspended sediment, and increasing river temperatures. Downstream from large lakes, glacier-fed rivers are less disturbed, channels are relatively stable and have well-developed salmonid habitats. The positive influences are indicated by the high diversity and abundances of benthic macroinvertebrates, which are important food resources for juvenile salmonids. High summer flows allow access for up-river salmon runs and lakes also provide both overwintering and rearing habitat. Copyright ?? 2000 John Wiley & Sons, Ltd.Rivers fed by glaciers constitute a major part of the freshwater runoff into the Cook Inlet basin of south-central Alaska. This basin is very important to the economy of the State of Alaska because it is home to more than half of the population and it supports multi-million dollar commercial, subsistence and sport fisheries. Hence an understanding of how glacial runoff influences biological productivity is important for managing rivers that drain into Cook Inlet. This paper examines the ways in which the regulation of glacier-fed rivers by proglacial lakes affects salmon productivity, with particular reference to the Kenai River. Salmon escapement per unit channel length on the Kenai River is between two and ten times that found for rain-and-snowmelt dominated rivers and glacier-fed rivers lacking lake regulation. Lakes are shown to influence biological processes in glacier-fed rivers by attenuating peak flows, sustaining high flows throughout the summer, supplementing winter low flows, settling suspended sediment, and increasing river temperatures. Downstream from large lakes, glacier-fed rivers are less disturbed, channels are relatively stable and have well-developed salmonid habitats. The positive influences are indicated by the high diversity and abundances of benthic macroinvertebrates, which are important food resources for juvenile salmonids. High summer flows allow access for up-river salmon runs and lakes also provide both overwintering and rearing habitat.

Hydrological Processes↗

USGS2014

Dynamics of the Yellowstone hydrothermal system

The Yellowstone Plateau Volcanic Field is characterized by extensive seismicity, episodes of uplift and subsidence, and a hydrothermal system that comprises more than 10,000 thermal features, including geysers, fumaroles, mud pots, thermal springs, and hydrothermal explosion craters. The diverse chemical and isotopic compositions of waters and gases derive from mantle, crustal, and meteoric sources and extensive water-gas-rock interaction at variable pressures and temperatures. The thermal features are host to all domains of life that utilize diverse inorganic sources of energy for metabolism. The unique and exceptional features of the hydrothermal system have attracted numerous researchers to Yellowstone beginning with the Washburn and Hayden expeditions in the 1870s. Since a seminal review published a quarter of a century ago, research in many fields has greatly advanced our understanding of the many coupled processes operating in and on the hydrothermal system. Specific advances include more refined geophysical images of the magmatic system, better constraints on the time scale of magmatic processes, characterization of fluid sources and water-rock interactions, quantitative estimates of heat and magmatic volatile fluxes, discovering and quantifying the role of thermophile microorganisms in the geochemical cycle, defining the chronology of hydrothermal explosions and their relation to glacial cycles, defining possible links between hydrothermal activity, deformation, and seismicity; quantifying geyser dynamics; and the discovery of extensive hydrothermal activity in Yellowstone Lake. Discussion of these many advances forms the basis of this review.

Idaho, Montana, Wyoming↗

USGS2016

The differing biogeochemical and microbial signatures of glaciers and rock glaciers

Glaciers and rock glaciers supply water and bioavailable nutrients to headwater mountain lakes and streams across all regions of the American West. Here we present a comparative study of the metal, nutrient, and microbial characteristics of glacial and rock glacial influence on headwater ecosystems in three mountain ranges of the contiguous U.S.: The Cascade Mountains, Rocky Mountains, and Sierra Nevada. Several meltwater characteristics (water temperature, conductivity, pH, heavy metals, nutrients, complexity of dissolved organic matter (DOM), and bacterial richness and diversity) differed significantly between glacier and rock glacier meltwaters, while other characteristics (Ca 2+ , Fe 3+ , SiO 2 concentrations, reactive nitrogen, and microbial processing of DOM) showed distinct trends between mountain ranges regardless of meltwater source. Some characteristics were affected both by glacier type and mountain range (e.g. temperature, ammonium (NH 4 + ) and nitrate (NO 3 - ) concentrations, bacterial diversity). Due to the ubiquity of rock glaciers and the accelerating loss of the low latitude glaciers our results point to the important and changing influence that these frozen features place on headwater ecosystems.

California, Colorado, Oregon, Washington, Wyoming↗

USGS2015

Predicting the resilience and recovery of aquatic systems: a framework for model evolution within environmental observatories

Maintaining the health of aquatic systems is an essential component of sustainable catchmentmanagement, however, degradation of water quality and aquatic habitat continues to challenge scientistsand policy-makers. To support management and restoration efforts aquatic system models are requiredthat are able to capture the often complex trajectories that these systems display in response to multiplestressors. This paper explores the abilities and limitations of current model approaches in meeting this chal-lenge, and outlines a strategy based on integration of ﬂexible model libraries and data from observationnetworks, within a learning framework, as a means to improve the accuracy and scope of model predictions.The framework is comprised of a data assimilation component that utilizes diverse data streams from sensornetworks, and a second component whereby model structural evolution can occur once the model isassessed against theoretically relevant metrics of system function. Given the scale and transdisciplinarynature of the prediction challenge, network science initiatives are identiﬁed as a means to develop and inte-grate diverse model libraries and workﬂows, and to obtain consensus on diagnostic approaches to modelassessment that can guide model adaptation. We outline how such a framework can help us explore thetheory of how aquatic systems respond to change by bridging bottom-up and top-down lines of enquiry,and, in doing so, also advance the role of prediction in aquatic ecosystem management.

Water Resources Research↗

USGS2014

Lianas as invasive species in North America

Liana diversity is typically low in the temperate zones; however, the influx of non-native invasive liana species in North America has increased local diversity at the expense of native habitats and species. Some of the most illustrative studies of invasive lianas in temperate North America compared the biological traits of invasive lianas with native congeners or ecological analogs. The majority of these studies focused on two species, Celastrus orbiculatus (oriental bittersweet) and Lonicera japonica (Japanese honeysuckle). Temperate zone lianas generally have higher photosynthetic rates than other early successional species and their host trees. Invasive lianas are having an increasing impact on the dynamics and trajectories of North American plant communities. They often exhibit superior growth and survival compared to their native counterparts, and in some cases, invasive lianas may directly contribute to the decline of their native correlates.

Book chapter↗

USGS2025

Performance comparisons for artificially propagated and wild Pacific lamprey juveniles and larvae

Artificially propagated Pacific lamprey ( Entosphenus tridentatus ) are produced for restoration and for use in dam passage studies to reduce the demand for wild fish. Such uses require that animals are representative of their wild counterparts. Previous work indicated that this is true for Pacific lamprey larvae and juveniles reared in the hatchery with respect to the length of sustained swimming. However, more subtle differences in behaviour and performance that lamprey need to survive have not been assessed. In this study, artificially propagated and wild fish were compared in laboratory tests under no-flow conditions to examine light avoidance, burrowing speed, burst swim speed, volitional routine swim speed and time to come to rest. Most larvae burrowed in less than a minute, and we found highly significant differences ( p < 0.001) between artificially propagated and wild larvae burrowing times, a critical escape behaviour. This could have implications for studies of larval entrainment at irrigation diversion canals or in turbine boils at dams. Interestingly, all of the wild juveniles tested came to rest quickly after introduction to the chamber (1.5 min), while artificially propagated lamprey swam robotically near the surface and 48% did not come to rest in the first 10 min (median time to rest = 9.5 min). In contrast, wild juveniles quickly (median = 1.47 min) sought areas near the tank bottom and attached strongly with their oral disc. Such behavioural differences could have important survival consequences for artificially propagated lamprey as they approach turbine intakes, bypass screens and irrigation diversion headgates. This study highlights the need to conduct behavioural assays that examine subtleties of fish behaviour that can be missed with traditional swim tunnel comparisons.

Aquaculture, Fish and Fisheries↗

USGS2025

Turning trash into treasure: Leveraging discarded filters for national-scale aquatic eDNA biomonitoring

Monitoring biodiversity changes over large spatiotemporal scales is critical for effective ecosystem conservation and management. This study investigates the potential of environmental DNA (eDNA) metabarcoding to enhance national-scale biomonitoring of freshwater diversity by leveraging discarded filters associated with routine water quality sampling from the U.S. Geological Survey's (USGS) National Water Quality Network (NWQN). We tested 375 samples from 103 NWQN sites for eDNA of native and non-native fish and found that 52% of the filters yielded fish eDNA for a total of 70 fish species detections. Of the filters that had fish eDNA present, an average of 3.7 species were detected. Benchmarking these results to USGS's Aquatic Gap Analysis Project (AGAP)—which includes both field-verified observations along with predictive models derived from fish capture and landscape predictor datasets—we found that eDNA from these filters detected only a fraction of the observed and expected fish diversity for these sites. Our results indicate that these discarded filters may not be sufficient for eDNA sampling of fish communities and posit that alternative filter types more appropriate for eDNA sampling may yield more valuable biomonitoring data. Nevertheless, we tested the efficacy of two novel approaches to facilitate large-scale biomonitoring. Though these filters did not yield adequate fish eDNA, the AGAP database provides a useful method for ground truthing fish species presence. The potential of integrating eDNA sampling into existing monitoring frameworks, which, when paired with more optimal eDNA methods, could be a cost-effective strategy to enhance biodiversity monitoring at large scales.

Aquaculture, Fish and Fisheries↗

USGS2012

Phylogeographic implications for release of critically endangered manatee calves rescued in Northeast Brazil

1. The Antillean manatee (Trichechus manatus manatus), a subspecies of the West Indian manatee, is a large-bodied marine mammal found in fresh, brackish, and marine habitats throughout the Caribbean Islands and Central and South America. Antillean manatees in Brazil are classified as critically endangered, with a census size of approximately 500 individuals. The population in the Northeast region of Brazil is suspected to have approximately 300 manatees and is threatened by habitat alteration and incidental entanglement in fishing gear. 2. A high incidence of dependent calf strandings have been identified near areas of altered critical manatee habitat. The majority of the calves are neonates, discovered alive, with no potential mothers nearby. These calves typically require human intervention to survive. Since 1989 the calves have been rescued (N=67), rehabilitated, and released (N=25) to supplement the small wild manatee population. The rescued calves, and those born in captivity, are typically, not released to their rescue location, mainly for logistical reasons. Therefore, phylogeographic analyses can help to identify related populations and appropriate release sites. 3. Here, mitochondrial DNA analyses identified low haplotype (h=0.08) and nucleotide (π=0.0026) genetic diversity in three closely related haplotypes. All three haplotypes (M01, M03, and a previously unidentified haplotype, M04) were found in the northern portion of the region, while only a single haplotype (M01) was represented in the south. This suggests the presence of two genetic groups with a central mixing zone. Release of rehabilitated calves to unrelated populations may result in genetic swamping of locally adapted alleles or genotypes, limiting the evolutionary potential of the population. 4. The small population size coupled with low genetic diversity indicates that the Northeast Brazil manatee population is susceptible to inbreeding depression and possible local extinction. Further conservation measures incorporating genetic information could be beneficial to the critically endangered Brazilian manatee population.

Aquatic Conservation: Marine and Freshwater Ecosys↗

USGS2018

Size-structured habitat selection by arapaima in floodplain lakes of the lower Amazon

Human modification of floodplain ecosystems is widespread and a major threat to fish populations, particularly in the tropics where fish diversity and rates of floodplain degradation are high. Identifying measures to minimize the susceptibility of floodplain fishes to habitat modification requires understanding dry-season lake habitat selection for species of conservation concern. This study examined the effects of environmental factors on dry-season floodplain lake habitat selection by arapaima ( Arapaima spp.) and determined the extent to which they differed across three size classes. In floodplain lakes of the lower Amazon River, variables were measured at locations representing habitat availability and compared with measurements taken where arapaima were observed during surface breathing. Regression models were used to account for between-lake variation in the presence of arapaima owing to nearby fishing communities. The probability of arapaima presence at each sample location was modelled based on the variables measured. The results indicated that arapaima expressed distinct habitat selection patterns, which differed significantly across size classes. The general pattern observed was that all arapaima were more likely to be found in deeper, more turbid, and higher conductivity locations, whereas smaller arapaima were more likely to remain near dense beds of floating macrophytes. The probability of arapaima presence differed among fishing community territories, reflecting differences in management schemes. Deeper, macrophyte-rich sections of floodplain lakes appear to provide key habitats for arapaima and deserve consideration for becoming priority targets for conservation of the rich diversity of fish species in these systems.

Pará↗

USGS2021

Connectivity between lentic and lotic freshwater habitats identified as a conservation priority for coho salmon

Juvenile Pacific salmon exhibit diverse habitat use and migration strategies to navigate high environmental variability and predation risk during freshwater residency. Increasingly, urbanization and climate-driven hydrological alterations are affecting the availability and quality of aquatic habitats in salmon catchments. Thus, conservation of freshwater habitat integrity has emerged as an important challenge in supporting salmon life-history diversity as a buffer against continuing ecosystem changes. To inform catchment management for salmon, information on the distribution and movement dynamics of juvenile fish throughout the annual seasonal cycle is needed. A number of studies have assessed the ecology of juvenile coho salmon ( Oncorhynchus kisutch ) during summer and autumn seasons; catchment use by this species throughout the annual cycle is less well characterized, particularly in high-latitude systems. Here, n = 3,792 tagged juvenile coho salmon were tracked throughout two complete annual cycles to assess basin-wide distribution and movement behaviour of this species in a subarctic, ice-bearing catchment. Juvenile coho salmon in the Big Lake basin, Alaska, exhibited multiple habitat use and movement strategies across seasons; however, summer rearing in lotic mainstem environments followed by migration to lentic overwinter habitats was identified as a prominent behaviour, with two-thirds of tracked fish migrating en masse to concentrate in a small subset of upper catchment lakes for the winter. In contrast, the most significant tributary overwintering site (8% of tracked fish) occurred below a culvert and dam, blocking juvenile fish passage to a headwater lake, indicating that these fish may have been restricted from reaching preferred lentic overwinter habitats. These findings emphasize the importance of maintaining aquatic connectivity to lentic habitats as a conservation priority for coho salmon during freshwater residency.

Aquatic Conservation: Marine and Freshwater Ecosys↗

USGS2021

Temporal invariance of social-ecological catchments

Natural resources such as waterbodies, public parks, and wildlife refuges attract people from varying distances on the landscape, creating "social-ecological catchments." Catchments have provided great utility for understanding physical and social relationships within specific disciplines. Yet, catchments are rarely used across disciplines, such as its application to understand complex spatiotemporal dynamics between mobile human users and patchily distributed natural resources. We collected residence ZIP codes from 19,983 angler parties during 2014–2017 to construct seven angler–waterbody catchments in Nebraska, USA. We predicted that sizes of dense (10% utilization distribution) and dispersed (95% utilization distribution) angler–waterbody catchments would change across seasons and years as a function of diverse resource selection among mobile anglers. Contrary to expectations, we revealed that catchment size was invariant. We discuss how social (conservation actions) and ecological (low water quality, reduction in species diversity) conditions are expected to impact landscape patterns in resource use. We highlight how this simple concept and user-friendly technique can inform timely landscape-level conservation decisions within coupled social-ecological systems that are currently difficult to study and understand.

Ecological Applications↗

USGS2023

Testing the hierarchy of predictability in grassland restoration across a gradient of environmental severity

Ecological restoration is critical for recovering degraded ecosystems but is challenged by variable success and low predictability. Understanding which outcomes are more predictable and less variable following restoration can improve restoration effectiveness. Recent theory asserts that the predictability of outcomes would follow an order from most to least predictable from coarse to fine community properties (physical structure > taxonomic diversity > functional composition > taxonomic composition) and that predictability would increase with more severe environmental conditions constraining species establishment. We tested this “hierarchy of predictability” hypothesis by synthesizing outcomes along an aridity gradient with 11 grassland restoration projects across the United States. We used 1829 vegetation monitoring plots from 227 restoration treatments, spread across 52 sites. We fit generalized linear mixed-effects models to predict six indicators of restoration outcomes as a function of restoration characteristics (i.e., seed mixes, disturbance, management actions, time since restoration) and used variance explained by models and model residuals as proxies for restoration predictability. We did not find consistent support for our hypotheses. Physical structure was among the most predictable outcomes when the response variable was relative abundance of grasses, but unpredictable for total canopy cover. Similarly, one dimension of taxonomic composition related to species identities was unpredictable, but another dimension of taxonomic composition indicating whether exotic or native species dominated the community was highly predictable. Taxonomic diversity (i.e., species richness) and functional composition (i.e., mean trait values) were intermittently predictable. Predictability also did not increase consistently with aridity. The dimension of taxonomic composition related to the identity of species in restored communities was more predictable (i.e., smaller residuals) in more arid sites, but functional composition was less predictable (i.e., larger residuals), and other outcomes showed no significant trend. Restoration outcomes were most predictable when they related to variation in dominant species, while those responding to rare species were harder to predict, indicating a potential role of scale in restoration predictability. Overall, our results highlight additional factors that might influence restoration predictability and add support to the importance of continuous monitoring and active management beyond one-time seed addition for successful grassland restoration in the United States.

Continental United States↗

USGS2024

Multi-decadal vegetation transformations of a New Mexico ponderosa pine landscape after severe fires and aerial seeding

Wildfires and climate change are having transformative effects on vegetation composition and structure, and post-fire management may have long-lasting impacts on ecosystem reorganization. Post-fire aerial seeding treatments are commonly used to reduce runoff and soil erosion, but little is known about how seeding treatments affect native vegetation recovery over long periods of time, particularly in type-converted forests which have been dramatically transformed by the effects of repeated, high-severity fire. In this study, we analyze and report on a rare long-term (23-year) dataset that documents vegetation dynamics following a 1996 post-fire aerial seed treatment and subsequent 2011 high-severity reburn in a dry conifer forest of northern New Mexico in the southwestern United States. Repeated surveys between 1997 – 2019 of 49 permanent transects were used to test for differences in vegetation cover, richness, and diversity between seeded and unseeded areas, and to characterize the development of seeded and unseeded vegetation communities through time and across gradients of burn severity, elevation, and soil-available water capacity. Post-fire seeding led to a clear and sustained divergence in herbaceous community composition. Seeded plots had much higher cover of non-native graminoids, primarily Bromus inermis , a likely contaminant in the seed mix. High-severity reburning in all plots in 2011 reduced native graminoid cover by half at seeded plots compared to both pre-fire levels and to plots that were unseeded following the initial 1996 fire. In addition, increased fire severity was associated with increased non-native graminoid cover and reduced native graminoid cover, native species richness, and species diversity. This study documents a fire-driven ecosystem transformation from a former conifer forest into a shrub-grass system, reinforced by aerial seeding of grasses and high-severity reburning. This unique long-term dataset illustrates that post-fire seeding carries significant risk of unwanted non-native species invasions that persist through subsequent fires – indicating that alternative post-fire management actions merit consideration to better support native ecosystem resilience in the face of emergent climate change and increasing disturbance. Lastly, this study highlights the importance of long-term monitoring of post-fire vegetation dynamics, as short-term assessments will miss key elements of the full complexity of ecosystem responses to fire and post-fire management actions.

New Mexico↗

USGS2026

Creating usable science: A Southwest Climate Adaptation Science Center study

The southwestern United States consists of diverse ecosystems that are experiencing increasing pressures from rising temperatures, increasing aridity, and sea level rise. To prepare this region for future uncertainty, there is a need for strong partnerships among researchers and societal partners. The Southwest Climate Adaptation Science Center (SW CASC) acts to foster engaged scholarship from diverse perspectives to produce science relevant for management and policy decisions. Here, we synthesized a subset of SW CASC-funded projects and published manuscripts to illustrate how the combination of new scientific knowledge and the research and practice of engaged scholarship produce actionable science with direct societal impacts. In the SW CASC Contributions to Regional Science section, we touch on new research produced from funded projects on the most common topics: (1) Forest Ecosystems, (2) Coastal Ecosystems, (3) Hydrometeorology, and (4) Research on Engaged Scholarship. In the SW CASC Contributions to Regional Impacts section, we outline engaged scholarship activities to demonstrate how they created societal impacts: (1) the Keepers of the Flame course and workshops, (2) the Southwest Fire Climate Adaptation Partnership and the Southern California Montane Forests Project, (3) the Coastal Managers Workshop, (4) the Colorado River Basin Wiki, and (5) the Natural Resource Workforce Development Program. In the SW CASC Publications Cited in Policy section, we used a bibliometric analysis to assess the impact of the SW CASC-funded research on policy. We analyzed how often publications were used in policy documents, finding a citation rate of 27.6%. This is high compared to similar analyses that found peer-reviewed research articles cited at a rate of 3.9% in policy documents. We conclude that coproduced science makes unique and important contributions to the resilience of the Southwest, not only by generating new knowledge but by building capacity, creating lasting relationships, and informing policy and conservation and management decisions.

Arizona, California, Nevada, Utah↗

USGS2023

Effects of population density and environmental conditions on life-history prevalence in a migratory fish

Individual variation in life-history traits can have important implications for the ability of populations to respond to environmental variability and change. In migratory animals, flexibility in the timing of life-history events, such as juvenile emigration from natal areas, can influence the effects of population density and environmental conditions on habitat use and population dynamics. We evaluated the functional relationships between population density and environmental covariates and the abundance of juveniles expressing different life-history pathways in a migratory fish, Chinook salmon ( Oncorhynchus tshawytscha ), in the Wenatchee River basin in Washington State, USA. We found that the abundance of younger emigrants from natal streams was best described by an accelerating or near-linear function of spawners, whereas the abundance of older emigrants was best described by a decelerating function of spawners. This supports the hypothesis that emigration timing varies in response to density in natal areas, with younger-emigrating life-history pathways comprising a larger proportion of emigrants when densities of conspecifics are high. We also observed positive relationships between winter stream discharge and abundance of younger emigrants, supporting the hypothesis that habitat conditions can also influence the prevalence of different life-history pathways. Our results suggest that early emigration, and a resultant increase in the use of downstream rearing habitats, may increase at higher population densities and with greater winter precipitation. Winter precipitation is projected to increase in this system due to climate warming. Characterizing relationships between life-history prevalence and environmental conditions may improve our understanding of species habitat requirements and is a first step in understanding the dynamics of species with diverse life-history strategies. As environmental conditions change—due to climate change, management, or other factors—resultant life-history changes are likely to have important demographic implications that will be challenging to predict when life-history diversity is not accounted for in population models.

Washington↗

USGS2024

Where east meets west: Phylogeography of the high Arctic North American brant goose

Genetic variation in Arctic species is often influenced by vicariance during the Pleistocene, as ice sheets fragmented the landscape and displaced populations to low- and high-latitude refugia. The formation of secondary contact or suture zones during periods of ice sheet retraction has important consequences on genetic diversity by facilitating genetic connectivity between formerly isolated populations. Brant geese ( Branta bernicla ) are a maritime migratory waterfowl (Anseriformes) species that almost exclusively uses coastal habitats. Within North America, brant geese are characterized by two phenotypically distinct subspecies that utilize disjunct breeding and wintering areas in the northern Pacific and Atlantic. In the Western High Arctic of Canada, brant geese consist of individuals with an intermediate phenotype that are rarely observed nesting outside this region. We examined the genetic structure of brant geese populations from each subspecies and areas consisting of intermediate phenotypes using mitochondrial DNA (mtDNA) control region sequence data and microsatellite loci. We found a strong east–west partition in both marker types consistent with refugial populations. Within subspecies, structure was also observed at mtDNA while microsatellite data suggested the presence of only two distinct genetic clusters. The Western High Arctic (WHA) appears to be a secondary contact zone for both Atlantic and Pacific lineages as mtDNA and nuclear genotypes were assigned to both subspecies, and admixed individuals were observed in this region. The mtDNA sequence data outside WHA suggests no or very restricted intermixing between Atlantic and Pacific wintering populations which is consistent with published banding and telemetry data. Our study indicates that, although brant geese in the WHA are not a genetically distinct lineage, this region may act as a reservoir of genetic diversity and may be an area of high conservation value given the potential of low reproductive output in this species.

Ecology and Evolution↗

USGS2016

Genetic variation at the MHC DRB1 locus is similar across Gunnison's prairie dog ( Cynomys gunnisoni ) colonies regardless of plague history

Yersinia pestis was introduced to North America around 1900 and leads to nearly 100% mortality in prairie dog ( Cynomys spp.) colonies during epizootic events, which suggests this pathogen may exert a strong selective force. We characterized genetic diversity at an MHC class II locus ( DRB1 ) in Gunnison's prairie dog ( C. gunnisoni ) and quantified population genetic structure at the DRB1 versus 12 microsatellite loci in three large Arizona colonies. Two colonies, Seligman (SE) and Espee Ranch (ES), have experienced multiple plague-related die-offs in recent years, whereas plague has never been documented at Aubrey Valley (AV). We found fairly low allelic diversity at the DRB1 locus, with one allele ( DRB1 *01) at high frequency (0.67–0.87) in all colonies. Two other DRB1 alleles appear to be trans-species polymorphisms shared with the black-tailed prairie dog ( C. ludovicianus ), indicating that these alleles have been maintained across evolutionary time frames. Estimates of genetic differentiation were generally lower at the MHC locus ( F ST = 0.033) than at microsatellite markers ( F ST = 0.098). The reduced differentiation at DRB1 may indicate that selection has been important for shaping variation at MHC loci, regardless of the presence or absence of plague in recent decades. However, genetic drift has probably also influenced the DRB1 locus because its level of differentiation was not different from that of microsatellites in an F ST outlier analysis. We then compared specific MHC alleles to plague survivorship in 60 C. gunnisoni that had been experimentally infected with Y. pestis . We found that survival was greater in individuals that carried at least one copy of the most common allele ( DRB1 *01) compared to those that did not (60% vs. 20%). Although the sample sizes of these two groups were unbalanced, this result suggests the possibility that this MHC class II locus, or a nearby linked gene, could play a role in plague survival.

Ecology and Evolution↗

USGS2017

Genetic structure among greater white-fronted goose populations of the Pacific Flyway

An understanding of the genetic structure of populations in the wild is essential for long-term conservation and stewardship in the face of environmental change. Knowledge of the present-day distribution of genetic lineages (phylogeography) of a species is especially important for organisms that are exploited or utilize habitats that may be jeopardized by human intervention, including climate change. Here, we describe mitochondrial (mtDNA) and nuclear genetic (microsatellite) diversity among three populations of a migratory bird, the greater white-fronted goose ( Anser albifrons ), which breeds discontinuously in western and southwestern Alaska and winters in the Pacific Flyway of North America. Significant genetic structure was evident at both marker types. All three populations were differentiated for mtDNA, whereas microsatellite analysis only differentiated geese from the Cook Inlet Basin. In sexual reproducing species, nonrandom mate selection, when occurring in concert with fine-scale resource partitioning, can lead to phenotypic and genetic divergence as we observed in our study. If mate selection does not occur at the time of reproduction, which is not uncommon in long-lived organisms, then mechanisms influencing the true availability of potential mates may be obscured, and the degree of genetic and phenotypic diversity may appear incongruous with presumed patterns of gene flow. Previous investigations revealed population-specific behavioral, temporal, and spatial mechanisms that likely influence the amount of gene flow measured among greater white-fronted goose populations. The degree of observed genetic structuring aligns well with our current understanding of population differences pertaining to seasonal movements, social structure, pairing behavior, and resource partitioning.

Ecology and Evolution↗