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USGS2025

Zircon as a pathfinder to REE mineralization

Carbonatites and alkaline silicate rocks are major primary sources of the rare earth elements (REE) and other critical metals, such as Nb. Despite the economic significance of these rocks, their formation and the processes of REE enrichment are poorly understood. Here, statistical analysis of a global dataset demonstrates that zircon geochemistry is a powerful recorder of REE metallogenesis and a potential pathfinder for REE deposits. Zircons from REE and Nb fertile intrusions lack Eu anomalies and have elevated Gd/Yb and Th/Yb, indicating they crystallised from magmas that originated from deep, oxidised and enriched mantle sources. Complexes with Nb enrichment have low U/Nb, reflecting an enriched mantle source, whereas high U/Nb in REE-only fertile intrusions suggest a subduction-metasomatised mantle source. Machine learning models demonstrate high accuracy in classifying zircon from barren and fertile deposits. Classification of detrital zircons shows that REE-enriched deposits correlate with supercontinent assembly, whereas Nb fertile complexes are associated with supercontinent breakup. This approach offers a new, mineral to global scale, petrologic and exploration tool that enhances understanding of REE metallogenesis.

Geochemical Perspectives Letters↗
USGS2024

Case definitions for wildlife diseases

Welcome to the first manual of “Case Definitions for Wildlife Diseases,” a “living” electronic publication. The plan is to add and update this manual’s case definitions periodically as warranted; thus, this manual will never be completed, and readers should download the latest versions of specific chapters (that is, definitions) when available. Constructive suggestions from readers are welcome and will help guide adjustments as this project progresses. The purpose of this manual is to provide case definitions for selected diseases of importance to wildlife in Canada and the United States. Case definitions provide standard sets of criteria for classifying the degree of certainty of a particular diagnosis and help improve surveillance data quality and comparability. Better data and standardization allow for improved data sharing, which increases geographic and species surveillance coverage and permits more robust analyses. The definitions included in this manual have been developed by veterinary pathologists, epidemiologists, and wildlife biologists primarily from the U.S. Geological Survey National Wildlife Health Center (NWHC) and Canadian Wildlife Health Cooperative (CWHC). Pathologists from each organization reviewed and finalized the definitions. Each case definition has been peer reviewed by two scientific experts before publication. This manual begins with the case definition template. This generic template includes four sections: “Individual, Place, and Time Criteria for Diagnosis and Testing,” “Field Criteria for Diagnosis,” “Laboratory Criteria for Diagnosis,” and “Epidemiological Linkage Criteria for Diagnosis” and can be used to guide development of new case definitions. Information in each section is then combined to provide an overall case classification. Disease diagnoses are classified as “Confirmed,” “Presumptive,” or “Suspected;” and evidence of a pathogen or toxin is classified as “Exposed” or “Present/Detected.” Each subsequent chapter is then a case definition for a specific disease of wildlife, and infectious and non-infectious diseases are included.

Techniques and Methods↗
USGS2025

Mapping potential sensitivity to hydrogeomorphic change in the UMRS riverscape

In 2020 the U.S. Geological Survey (USGS), as part of the Upper Mississippi River Restoration (UMRR) Program, began a new project to characterize potential hydrogeomorphic change associated with hydrogeomorphic units (HGUs) and their catenae (units linked by their association with sediment sources and flow origins). The goal of the project was to develop a geographic information system (GIS) database of HGUs for the Upper Mississippi River System (UMRS) available to both scientists and river managers working on UMRR studies and HREP planning and design studies. The characterization was based on a hydrogeomorphic change hierarchical classification developed previously for the UMRS. The products were generated with automated techniques in a GIS using systemic datasets. Landforms were mapped from the 2015 UMRS topobathymetric dataset with geomorphon (shape-based) tools tailored for the large riverscape, valley bottom environments in the UMRS. A clustering analysis was applied to the resulting landforms to identify HGUs associated with zones of perennial low flows, bankfull flows, and overbank floodplains. Catenae were assembled based on the proximity of the units to the main channel, tributary mouths, and side channels from previously published aquatic areas (USACE, 2018) coupled with least-cost flowpath linkages between potential sediment origins and planform change units developed by Rogala, Fitzpatrick, and Henderson (2020). These GIS-based analyses were successful at identifying a range of HGUs using an automated technique with available data across the entire riverscape, with emphasis on those that have the potential for hydrogeomorphic change. Most of the resulting features are depositional, as expected in a large river system. However, this is the first attempt of linking tributary inputs, side channel erosion and levee breaches with their depositional counterparts. The approach was successfully piloted in Pools 8 and 10 in the Upper Impounded Reach and Pool 14 in the Lower Impounded Reach, with next steps for application in reaches of the unimpounded section and Illinois River. This report emphasizes results from Pool 10, which was the focus of most of our attention during the pilot phase.

Illinois, Indiana, Iowa, Minnesota, Missouri, Sout↗
USGS2024

Substrate Enhancement Pilot Project—Monitoring summary and evaluation, Kootenai River, Idaho, 2012–22

To assess changes in substrate conditions and the efficacy of artificially placed substrates at select sites on the Kootenai River near Bonners Ferry, Idaho, the U.S. Geological Survey, in cooperation with the Kootenai Tribe of Idaho, completed repeat bathymetric, velocimetric, and underwater videography surveys. Collectively, three project sites throughout the Kootenai River make up the Substrate Enhancement Pilot Project (SEPP), an effort intended to improve spawning and egg incubation viability at locations identified to be aquatic habitat limited for the endangered Kootenai River white sturgeon (Acipenser transmontanus). Following the placement of coarse substrates at each site, bathymetric, velocimetric, and underwater videography data were collected from 2012 to 2022 to assess the role of deposition and erosion on maintaining suitable white sturgeon spawning and incubation substrates. Minimal erosion and deposition occurred at all Substrate Enhancement Pilot Project sites, according to interannual and intra-annual net volumetric changes between bathymetric surveys. Depending on the timing of bathymetric surveys relative to the annual peak streamflow conditions, isolated locations of deposition or erosion were observed at each site and the potential for deposition or erosion was supported by measured mean depth-averaged velocities. This study concluded that variability of deposition and scour were common at each site throughout the monitoring period and may be attributed to fluctuations in streamflow. Repeat bathymetric, underwater videography, and velocity mapping surveys were used to verify the interstitial spaces and surfaces of substrates at each SEPP site remained free of fine sediments for intervals longer than a year but were susceptible to deposition between high streamflow events.

Idaho↗
USGS2026

Northern bobwhites select for native grasses on working grazing land

Northern bobwhite ( Colinus virginianus ; bobwhite) populations have experienced an 85% decline across most of its range since the 1960s. The most drastic decreases have been in the southeastern United States where biologists attribute the decline to widespread habitat loss, including conversion of native grasslands to tall fescue ( Lolium arundinaceum ) and other exotic cool-season grass (CSG) pasture and hayfields. Including agricultural lands in conservation programs could improve habitat conditions on a regional scale. One working-lands conservation strategy involves the use of native warm-season grasses (NWSGs) rather than cool-season exotic grasses as economically viable cattle forage. To evaluate this management practice for creating bobwhite habitat, we conducted a field study on a bobwhite population in eastern Kentucky, USA, where grazed NWSG and burned NWSG fields were adjacent to exotic grazed and exotic hayed CSG fields. Between April 2019 and October 2022, we used radio telemetry to track bobwhites to evaluate resource selection at second- and third-order scales. Bobwhites used traditionally managed CSGs less than would be expected by chance at the second-order scale in both breeding and non-breeding seasons. Bobwhite use of grazed NWSG and burned NWSG was greater than would be expected by chance at the second-order scale in both breeding and non-breeding seasons. Similarly, at the third-order scale, bobwhites used CSGs less than would be expected by chance, whereas NWSGs and woody stems were used more than by chance alone. Our study suggests that bobwhites select NWSGs at multiple spatial scales despite broad-scale availability of managed exotic CSGs. Under a working-lands framework, the integration of NWSGs into working lands could create bobwhite habitat in the southeastern United States, especially if woody stems are present.

Kentucky↗
USGS2026

Modeled groundwater and surface-water interactions surrounding Mobile Bay, Alabama, 2008–15

The U.S. Geological Survey, in cooperation with the Gulf Coast Ecosystem Restoration Council, has used MODFLOW 6 to develop a groundwater-flow model to simulate groundwater and surface-water interactions in the Mobile Bay, Alabama, area. The model results indicated that, on average, groundwater discharge near the coastline is equal to 2.5 percent of the surface water that flows into the bay. The model was also used to determine how changes in recharge, sea level, and groundwater pumping affect groundwater levels and discharge rates. The results indicate that more groundwater discharge occurred in the winter and spring when recharge was higher, sea level was lower, and groundwater pumping was lower than during the summer and fall. Additionally, the amount of emergent groundwater was closely related to sea level; when sea level was higher, there was more area with emergent groundwater. Furthermore, the depth of nonemergent groundwater was related to trends in recharge and pumping. During periods of increased recharge and reduced pumping, a significant portion of the model area exhibited a depth to the water table of less than 1 meter below the land surface. Conversely, during periods of decreased recharge and heightened pumping, much of the model area showed a depth to the water table ranging from 1 to 5 meters.

Alabama, Mississippi↗
USGS2026

Regreening, restoring, and reconnecting a southwestern wetland ecosystem – the Zeedyk wetland

Alluvial wetland ecosystems are vital as biodiversity hotspots but are increasingly threatened by anthropogenic stressors and drought. These pressures are especially acute in arid and semi-arid regions, where eco-hydrologic connectivity is fragile and recovery is slow. This study quantifies the efficacy of nature-based solutions, particularly the ‘Zeedyk approach,’ which employs low-tech Natural Infrastructure in Dryland Streams (NIDS)—including rock detention structures—to slow surface water, raise groundwater tables, and restore wetland function at a spring-fed wetland in Cebolla Canyon, New Mexico, U.S.A. Our results depict a Restoration Feedback Loop that captures stages of change from a healthy wetland in 1935, altered by 20th-century agriculture and grazing, to the re-establishment of the historical flow regime by 2024 documented through an 89-year archive of aerial imagery (1935–2024). By the end of our study period, the Spring-Fed Wetland had expanded by roughly 229% of the original 1935 area, to 4.13 ha. Using 40 years of satellite data, we assess changes in vegetation and hydrology with remote sensing indices. Spatial and temporal analyses reveal significant increases in vegetation greenness and wetness, particularly in an Expanded Wetland subregion, which exhibited ∼3.5x higher wetness and ∼1.5x higher greenness trends compared to adjacent areas. Monthly metrics highlight seasonal variability, with increases in greenness linked to monsoonal rainfall and lateral water redistribution, indicating that restoration impacts extend beyond the primary wetland. This study demonstrates the utility of cloud-based platforms like Google Earth Engine and USGS EarthExplorer for long-term monitoring of wetland restoration, while quantifying the efficacy of the ‘Zeedyk approach’ and demonstrating its potential as a scalable method to restore and conserve wetland meadows in other arid and semi-arid landscapes.

New Mexico↗
USGS2026

Lunar analog study using portable gamma-ray neutron detector: Radiochemical mapping of silicic-to-basaltic volcanic terrains in the San Francisco Volcanic Field, Arizona

Studying lunar silicic volcanism provides key insights into the Moon’s crustal evolution, magmatic processes, and volcanic history. The Lunar-VISE (Lunar Vulkan Imaging and Spectroscopy Explorer) mission will investigate the Gruithuisen domes, a unique lunar region hypothesized to have formed through silicic volcanism. Using instruments on a Firefly Aerospace lander and a Honeybee Robotics rover, Lunar-VISE will analyze mineralogy, geochemistry, and surface properties to determine the origin and evolution of the domes, with a gamma-ray and neutron spectrometer (LV-GRNS) among its payload instruments. In preparation for this mission, we conducted preliminary fieldwork using a handheld gamma-ray neutron detector with NaI(Tl) and Cs LiYCl :Ce (CLYC) scintillators. This study focuses on various rhyolitic and basaltic volcanic centers in the San Francisco Volcanic Field (SFVF) near Flagstaff, Arizona—specifically Sugarloaf Peak, Bonito Lava Flow, and Robinson Mountain, a region containing several well-characterized lunar analog sites. The SFVF was selected for this study due to its broad compositional diversity spanning basaltic to rhyolitic compositions, its well-preserved volcanic morphologies, and its extensive use in previous NASA field campaigns and astronaut training exercises, making it an ideal terrestrial laboratory for testing planetary exploration techniques. We measured natural radioactivity, specifically from potassium (K), thorium (Th), and uranium (U) and other elements in their decay chains, which serve as diagnostic tracers of magmatic differentiation and crustal evolution processes, to assess geochemical variability across compositionally diverse terrains. The detector’s sensitivity was assessed across varying concentration levels. Regionally averaged concentrations of radioisotopes were determined by gamma-ray spectroscopy at selected sites. Our measurements reveal significant compositional variations between sites, with Sugarloaf Peak (rhyolitic, silicic dome) exhibiting the highest average radioisotope concentrations (K: 3.29 ± 0.24 wt%, U: 14.35 ± 1.81 ppm, Th: 27.14 ± 2.43 ppm), while Bonito Lava Flow (K: 1.13 ± 0.08 wt%, U: 3.86 ± 0.52 ppm, Th: 7.52 ± 1.02 ppm), and Robinson Mountain (K: 1.46 ± 0.16 wt%, U: 5.59 ± 1.06 ppm, Th: 11.75 ± 1.98 ppm) show lower concentrations aligned with basaltic compositions. Gamma-ray fluxes were elevated by a factor of approximately three to four at Sugarloaf Peak relative to nearby basaltic terrains, consistent with expected geochemical differentiation patterns. Furthermore, at meter scales, proximity to geological features significantly affects measurements. Th concentrations adjacent to a cliff face at Sugarloaf’s base were 28% higher than values measured 3-5 meters away from the same feature, demonstrating localized compositional heterogeneity. Analysis of station-by-station measurements reveals that K, U, and Th concentrations show an elevation trend at Robinson Mountain and generally higher concentrations near Sugarloaf Peak’s summit, suggesting progressive magmatic differentiation and/or the presence of more evolved lithologies at higher elevations. By mapping these elements on Earth using GRNS, we aim to optimize measurement techniques for Lunar-VISE and similar rover-borne missions by demonstrating the applicability of portable GRNS instruments for planetary surface exploration in an analog environment.

Arizona↗
USGS2025

Earthquake stress-drop values delineate spatial variations in maximum shear stress in the Japanese forearc lithosphere

Earthquake stress drop (Δσ) may increase with depth and stress in the brittle lithosphere. However, the range of uncertainty in Δσ and the lack of constraints on absolute stress make it difficult to establish whether they are correlated. Here, we investigate Δσ dependence on depth and maximum shear stress ( τ max ) based on ~11 years of seismicity in the northeastern Japanese forearc following the 2011 Tohoku-Oki megathrust earthquake. We interpret Δσ estimates computed using both individual spectra and spectral-ratio methods and find that Δσ exhibits a clear depth dependence within the seismically active upper ~60 km of the forearc lithosphere ( ~ 0.8 MPa per 10 km). We further compare Δσ values with quantitative τ max estimates from finite-element models of force balance. We find that median Δσ values increase with τ max in the brittle forearc lithosphere and that earthquake stress release is proportional to τ max . The dependence of Δσ on τ max explains the apparent depth dependence of Δσ and suggests that average Δσ values provide a relative measure of the stress at failure. In the northeastern Japanese forearc, Δσ values remained roughly constant in the decade following the Tohoku-Oki earthquake, suggesting negligible changes in failure stress in the forearc since the mainshock.

Communications Earth and Environment↗
USGS2025

Multi-lithofacies alluvial characterization via airborne electromagnetic-borehole fusion using ordinary interval kriging and geologic constraints

Airborne electromagnetic (AEM) survey provides extensive spatial coverage and detailed resolution at the near surface and can be used to develop hydrogeological models. However, utilization of AEM data is not straightforward because AEM resistivity is an indirect measurement for inferring sediment types. This study develops an ordinary interval kriging (OIK) algorithm and a resistivity-to-multi-lithofacies (R2ML) data fusion workflow for multi-lithofacies alluvial characterization. OIK utilizes irregular interval data to construct three-dimensional (3D) resistivity fields from one-dimensional inverted AEM resistivity models. The R2ML workflow maps the resistivity field generated from OIK into a multi-facies lithological model, incorporating geologic constraints derived from well logs and geological observations. The numerical and real-world cases demonstrate that OIK is computationally efficient, accounts for 3D anisotropy, and minimizes the smoothing effect, thereby preserving resistivity contrasts and reducing interpolation uncertainty. The methodology is applied to lithologic characterization of the Mississippi River Valley alluvial aquifer (MRVA) in the Shellmound area, Mississippi, U.S. A frequency-domain AEM survey was conducted to support groundwater studies for the managed aquifer recharge (MAR) to the MRVA. The resulting lithological model, including four types of lithofacies—clay, very fine sand, fine-medium sands, and graveliferous sands, illustrates the geomorphological processes of the MRVA and implies potential MAR. The alignment between the lithological model and existing geological and hydrogeological investigations demonstrates that OIK and R2ML workflow effectively capture the subsurface architecture of the MRVA. The methods have broad applicability for characterizing alluvial aquifers through AEM-borehole data fusion, supporting sustainable groundwater management.

Mississippi↗
USGS2025

Assessing flood water infiltration and storage in a restored floodplain

In urban areas, floodplain restoration is gaining prominence as a strategy for restoring the natural functions of floodplain ecosystems and reducing flood risk. This has spurred research into potential interactions between floodwaters, the hyporheic zone, and the floodplain aquifer. An urban restored stream in Wisconsin, USA, was used as a case study to examine four methods to estimate floodplain infiltration and storage during overbank floods. We characterised flood-related infiltration over a 4-year period from 2018 through 2021 by simultaneously and continuously measuring groundwater levels and vertical temperature profiles with stream water levels linked to high-resolution flood inundation maps. High-resolution topographic data helped to quantify surface floodplain storage and the unsaturated soil volume relative to flood stage. Infiltration estimates from the simple methods align well with those from the more complex methods; however, the complex methods provide additional insights about the factors influencing infiltration. Results from all methods indicate that the volume of water that vertically infiltrates during floods is likely small relative to the total volume of the flood, with 0.08%–0.52% of flood water infiltrating into the floodplain, on average. Spatially variable vertical hydraulic gradients, driven by flood depth, groundwater level, and permeability, imply heterogeneous patterns of infiltration across the floodplain. Gradients favourable for infiltration typically occurred during the onset of flooding but, over the study period, were mostly (98% of the time) favourable for groundwater discharge to the channel (non-flood periods). These findings highlight the importance of considering surface-groundwater dynamics, floodplain soils, and unsaturated floodplain volume in defining the benefits of floodplain infiltration for flood attenuation.

Wisconsin↗
USGS2025

Aquifer storage change and storage properties, Rio Rancho, New Mexico, 2019–23

To better understand changes in groundwater storage and groundwater elevations, the U.S. Geological Survey, in cooperation with the City of Rio Rancho, New Mexico, carried out a multiyear groundwater monitoring project. Groundwater-level data were collected at 27 locations, including sites having multiple wells screened at different depths and those having long-term records. A repeat microgravity network of 20 stations was established, and surveys were carried out three times per year. The microgravity method provides a direct, quantitative measurement of mass change caused by aquifer filling or draining. Data collected during the 2019–23 study period indicate generally stable groundwater conditions, with small fluctuations in groundwater levels (increasing at some wells, declining at others), and small declines in groundwater storage over the period of record at most gravity locations (average = −0.33 foot of water per year). The discrepancy between the water-level and microgravity data may have been caused by a loss of soil moisture in the unsaturated zone, which is as much as 1,000 feet thick in some areas. At the Rio Rancho Advanced Water Treatment Facility, where the city recharges water through direct injection, there may be seasonal correlations in storage related to injection but no longer-term accumulation of recharged water in the immediate vicinity of the facility, indicating water is moving efficiently into the aquifer.

New Mexico↗
USGS2024

Self-guided decision support groundwater modelling with Python

The GMDSI tutorial notebooks repository provides learners with a comprehensive set of tutorials for self-guided training on decision-support groundwater modelling using Python-based tools. Although targeted at groundwater modelling, they are based around model-agnostic tools and readily transferable to other environmental modelling workflows. The tutorials are divided into three parts. The first covers fundamental theoretical concepts. These are intended as background reading for reference on an as-needed basis. Tutorials in the second part introduce learners to some of the core concepts parameter estimation in a groundwater modelling context, as well as providing a gentle introduction to the PEST, PEST++ and pyEMU software. Lastly, the third part demonstrates how to implement highly-parameterized applied decision-support modelling workflows. The tutorials aim to provide examples of both “how to use” the software as well as “how to think” about using the software. A key advantage to using notebooks in this context is that the workflows described run the same code as practitioners would run on a large-scale real- world application. Using a small synthetic model facilitates rapid progression through the workflow.

Journal of Open Source Education↗
USGS2026

Family life is critical for migration and survival in a long-lived social bird

Extended parental care is common among birds and particularly well known among long-lived migratory species. Yet, factors influencing the duration of parental care are poorly understood, and empirical evidence for the functional importance of family life for offspring development is scarce. Using unique tracking and genetic data of 55 adult and juvenile migratory Bewick’s swans, among which 18 parent-offspring pairs and 13 sibling pairs, we quantify variation in family bond duration and identify the cause and consequences of their dissolution. Families generally broke up during the second half of the first northward migration of the offspring, when offspring were nearly one year old. Earlier separation occurred on the wintering grounds in response to disturbance ( n = 10 juveniles) and led to delayed migration and, critically, lower survival (40 vs. 86%). Our results provide rare empirical evidence that family bonds, as a pathway for social learning, are not just important, but vital to the migration and survival of young family-living birds.

Behavioral Ecology and Sociobiology↗
USGS2026

King Rails in southeastern Arkansas are majority resident

King Rails ( Rallus elegans ), a declining species of secretive marsh bird, have a mixed migratory strategy, with some individuals migrating and some being year-round residents. Determining the distribution of migratory versus resident King Rails is critical to guiding habitat management and assessing risks to populations. We examined the migratory status of adult King Rails at the Choctaw West Wildlife Management Area in southeastern Arkansas, the only known site in Arkansas with multiple breeding pairs. Of the 23 adult King Rails we tagged in 2022 and 2023, two birds migrated away from the local area, one in each year. One migrated 145 km, and the other 450 km. Our findings suggest that the line between the migratory and resident range of Arkansas King Rails could be north of our site.

Arkansas↗
USGS2025

Tracing metal sources and groundwater flow paths in the Upper Animas River watershed using rare earth elements and stable isotopes

Groundwater flow paths and processes that govern metal mobility and transport are difficult to characterize in mountainous bedrock watersheds. Despite the difficulty in holistic characterization, conceptual understanding of subsurface hydrologic and geochemical processes is key to developing remediation plans for locations affected by acid mine drainage, such as the Upper Animas River watershed in southwestern Colorado, USA. Stable isotopes of water and rare earth elements were utilized to evaluate groundwater flow and metal sources within this complex catchment. Stable isotope samples collected from draining mine adits and springs display systematic spatial variation wherein sample sites at higher elevations have greater seasonal variability than sites at lower elevations. The Upper Cement Creek watershed, where multiple draining mines are present, displays the lowest seasonal variation in stable isotopic signatures, potentially indicating the presence of a large, well-mixed volume of groundwater storage or interbasin groundwater flow. Rare earth elements display statistically significant variation between different alteration styles in the catchment. Overprinting of regional propylitic alteration is evident based on enrichment of middle rare earth elements in acidic springs and mines that are not spatially associated with surficial exposures of acid generating alteration styles. Europium anomaly and middle rare earth enrichment signatures from two flooded mine tunnels on opposite sides of a watershed divide indicate connections to the same subsurface flooded mine workings.

Colorado↗
USGS2025

40Ar/39Ar geochronology supporting mineral resources research at USGS Denver

The 40 Ar/ 39 Ar geochronology method is used to date potassium-bearing rocks and minerals, based on the decay of 40 K to 40 Ar, which provides important temporal constraints for geological events. The USGS Denver Argon Geochronology Laboratory dates samples from a variety of projects, mainly in the USGS Mineral Resource Program and the National Cooperative Geologic Mapping Program, facilitating in-depth research into the timing of geological events and processes. Recent applications of this method include geochronological studies in the Yellow Pine district, revealing mineralization ages that range from 51 to 70 Ma, and investigations into the Bear Lodge alkaline complex, providing insights into the timing of REE carbonatite formation. Additionally, studies at Alunite Ridge highlight the method's potential for understanding concealed mineral deposits. Ongoing projects continue to leverage 40 Ar/ 39 Ar data to enhance understanding of geologic frameworks and mineral resources, underpinning its importance in modern geochronology and mineral resource assessment.

Conference Paper↗