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Reproduction

Lake charr Salvelinus namaycush are typically fall spawners although one ecotype has populations that spawn during spring and fall (siscowets in Lake Superior). Lake charr are iteroparous (reproduce more than once in a lifetime) with group-synchronous ovarian development and typically spawn once per year. However, lake charr may not reproduce every year, a phenomenon known as skipped spawning. Free embryos are active on spawning reefs, make diurnal vertical movements from spawning substrate, and feed exogenously much earlier than previously assumed. The abundance of food and predators strongly affects the rate of development, yolk sac absorption, and duration of residence on spawning sites. The necessity for, and timing of, gas bladder inflation, and mechanisms for inflation without access to the surface, need further study. The low survival of free embryos due to thiamine deficiency has likely contributed to the lack of recruitment of lake charr in the Laurentian Great Lakes for decades. Thiaminase, a thiamine-degrading enzyme, appears to be the causal agent for thiamine deficiency in Great Lakes lake charr.

Great Lakes↗

Distribution

The lake charr Salvelinus namaycush is restricted in its native distribution to oligotrophic fresh waters of northern North America largely within the extent of the Pleistocene glaciations. It is the only freshwater species in northwest North America that does not occur in Siberia. A GIS-based native occurrence map linked to the HydroLAKES database does not extend the lake charr range but provides more comprehensive occurrence data than previous maps. The total waterbody area of lakes occupied by lake charr (451,304 km 2 ) is 40% of the total waterbody area across the range. Lake charr occur from 42.020901 latitude in the south to 74.420800 in the north and from −62.700000 longitude in the east to −161.173090 in the west. Lake charr lakes range in surface area from 3.4 to 8,210,000 ha (mean = 9715 ha; median = 191 ha), maximum depth from 2.7 to 614 m, and elevation from sea level to 2035 m ASL (mean = 381 m; median = 366 m). Glaciation, water temperature, dissolved oxygen, depth, and nutrient content are the main variables associated with lake charr native distribution in lakes. Life history variation, physiology, and ecological opportunity are the most likely drivers of lake charr dispersal and colonization.

Book chapter↗

Life history and population dynamics

Lake charr Salvelinus namaycush life history and population dynamics metrics were reviewed to evaluate populations inside ( n = 462) and outside ( n = 24) the native range. Our goals were to create a database of metrics useful for evaluating population status and to test for large-scale patterns between metrics and latitude and lake size. An average lake charr grew from a 69-mm length at age-0 ( L 0 ) at 89 mm/year early growth rate ( ω ) to 50% maturity at 420 mm ( L 50 ) at age 8 ( t 50 ), and then continued to grow toward a 717-mm asymptotic length ( L ∞ ). L 50 was positively correlated to ω , whereas t 50 was inversely correlated to ω . Lake charr grew slower toward larger size and older age in northern latitudes and larger lakes than in southern latitudes and smaller lakes. Population density (number/ha) and yield density (kg/ha) decreased with lake size, and yield and total annual mortality ( A ) decreased with latitude. Native populations grew slower ( ω ), were heavier at 500 mm ( W 500 ), matured at shorter L 50 , grew to a shorter L ∞ , and suffered lower annual mortality A than non-native populations. Our review and database should be useful to managers and researchers for quantifying lake charr population status across the species range.

Book chapter↗

Trophic ecology

The trophic ecology of lake charr Salvelinus namaycush morphotypes from small and large lakes within their native and introduced ranges is reviewed over the past 50 years. The lake charr is an apex predator in most habitats it occupies, where it plays a significant role in defining food webs. While often considered piscivores, lake charr feed on a range of aquatic prey throughout their life history, including zooplankton, benthic invertebrates, and fish, as well as terrestrial insects, mammals, birds, amphibians, and reptiles. Lake charr diets that vary within morphotypes among lakes and among sympatric morphotypes reflect differences in habitat use, prey availability, and individual preferences. Temporal variability in diet can result from seasonal prey pulses, thermal barriers, and long-term prey dynamics. Lake charr adapt quickly to consume invasive prey fishes, and often decimate native prey fishes and other piscivores in lakes into which they are introduced. Salient research topics in lake charr trophic ecology include: (1) how best to quantify spatial and temporal trophic niche space; and, (2) how changing environmental conditions, such as invasive species and lake warming, will influence lake charr feeding and broader lake food-web dynamics.

Book chapter↗

The concept of evanescent microbial ecosystems in Earth's atmosphere

This essay presents the hypothesis that short-lived or evanescent microbial ecosystems exist in Earth’s lower troposphere (~ < 4 km). This hypothesis is supported by culture- and molecular-based studies that have shown diverse, viable, and metabolically active microbial communities within Earth’s atmospheric boundary layer. Surprisingly, microorganisms are routinely recovered in samples collected at extreme altitudes including those within the stratosphere (> 18 km). Volcanic eruptions, dust storms, fires, and sea spray are known to seed the atmosphere with microorganisms and to serve as potential nutrient sources while in the atmosphere and upon deposition. Recent research has demonstrated that microorganisms are metabolically active in clouds; for example, archaea capable of utilizing gases such as methane and hydrogen-nitrogen have been identified in clouds and in the atmosphere over natural and anthropogenic gas seeps. The only difference between this hypothesized ecosystem to more traditionally defined ecosystems is its evanescent characteristics where clouds or gas plumes eventually dissipate as they reside over and traverse Earth’s terrestrial and/or aquatic environments. The life cycle of these hypothesized evanescent airborne ecosystems would be short-lived relative to the classically defined biomes or ecosystems.

Book chapter↗

Middle Holocene hydrologic changes catalyzed by river avulsion in Big Soda Lake, Nevada, USA

Big Soda Lake is a 63 m deep, 1.6 km 2 maar lake in the Great Basin of Nevada, USA. Water level in the lake is controlled by groundwater inputs from the surrounding aquifer and the only surface water input is rainfall, which is negligible. A core taken in 2010 records an 8.75 m depositional history of the lake. A radiocarbon date on fossil pollen from 8.4 m below the sediment water interface (BSWI) of 14,740 (+1120/−825) cal yr BP suggests that the core may cover the latest Pleistocene and Holocene depositional history of the lake. Stable isotope values of oxygen and carbon (δ 18 O and δ 13 C) on authigenic calcite, diatom assemblages, and sedimentary structures all show consistent hydrological change from initially saline water at the bottom of the core to fresh/brackish water at about 6 m BWSI, back to saline water at 4.3 m. At 4.3 m depth, the bedding and color of the core change abruptly, and the stable- isotope and diatom assemblages indicate a consistently hypersaline lake until near the top of the core, when fresh water entered the lake due to irrigation and canal building in the twentieth century. The stable isotopes of the calcite abruptly change from inversely varying isotopic compositions below 4.3 m depth to covarying above. This break between relatively fresh and saline conditions in the lake occurs during the middle Holocene, although the exact timing of the transition is unknown due to variability in the 14 C age determinations. The cause for such an abrupt change is difficult to explain through climate shifts, as evidence suggests climate in the Great Basin was different from what the Big Soda Lake record indicates in the Early Holocene. It is hypothesized that the Walker River flowed to the Carson River basin before 5600 cal yr BP, with water either flowing directly into the lake or raising the groundwater table sufficiently to freshen Big Soda Lake. The initial increase in salinity likely was caused by decreased flow of the Walker River due to Middle Holocene aridity. The lake level lowered slowly, and more saline conditions prevailed until 4.3 m depth when water from the Walker River stopped flowing into the Carson River basin. Above 4.3 m depth, diatom and isotopic evidence indicates that the lake became consistently saline. The isotopic and diatom assemblage transitions observed in Big Soda Lake sediment are not consistent with climate reconstructions and demonstrate that hydrologic shifts in a basin can be an important driver of change regardless of climatic conditions. However, climate shifts may also play a role in the hydrologic changes by supplying more or less water to river courses that may induce river avulsion.

Nevada↗

History of Great Salt Lake, Utah, USA: Since the termination of Lake Bonneville

During the past half century or so diverse histories of Great Salt Lake have been written from differing perspectives and all of them have contributed ideas and essential data. The published literature, however, can be confusing and misleading. In this chapter, we review and provide context for a number of those publications. This chapter is intended as a summary of what is known, what is not known, and what cannot be known with precision about the history of the lake. Great Salt Lake is the largest hydrographically closed lake in the Bonneville basin of northwestern Utah. It responds to both short-term weather and long-term climate. In the Lake Bonneville/Great Salt Lake lacustrine system, the end of Lake Bonneville at 13,000 yr BP marks the beginning of Great Salt Lake. The much larger and deeper lakes of the Bonneville lake cycle responded to the pluvial climate of oxygen isotope stage 2, but the warmer, drier climate of oxygen isotope stage 1 led to rapid fluctuations within a relatively narrow, well-documented elevation range, 5 m above and 9 m below the historical mean elevation of ~1280 m. Two exceptional but short-lived rises of Great Salt Lake to elevations higher than 5 m above ~1280 m have been documented —one during the Gilbert episode, which peaked about 11,600 yr BP near an elevation of 1295 m, and one to about 1289 m sometime after about 11,000 yr BP. The historical Great Salt Lake hydrograph (the past 150 years) shows its labile behavior. Smooth-curve hydrographs based on estimates of lake level at time scales of decades, centuries, or millennia, such as those presented in previous publications, do not accurately portray the way lake level rises and falls, and a precise plot of post-Bonneville changes in level of Great Salt Lake would resemble the “jagged” historical record. The available sedimentary and geomorphic data are not conducive at this time to the production of a highly precise hydrograph, so we suggest that post-Bonneville lake-level history be portrayed, imprecisely but accurately, as confined generally between the elevation limits of 1285 and 1271 m, with an indication of the exceptional spikes in the lake level.

Utah↗

Polar bear foraging behavior

Polar bears forage in the marine environment, primarily on the sea ice over the shallow waters of the continental shelf. They are solitary, ambush hunters that catch ringed and bearded seals when they surface to breathe in ice holes or haul out on the ice to rest and molt. In most parts of their range, polar bears experience dramatic seasonal variability in their ability to catch seals, with foraging success peaking in late spring and early summer when seal pups are weaned. During this time, the body mass of polar bears can nearly double, especially in pregnant females, such that body composition may reach 49% body fat. The accumulation of body fat is vital for these bears to survive through the autumn and winter when seals are less accessible or when pregnant adult female bears enter dens and fast. When the sea ice retreats in summer, some bears exhibit a temporary switch to omnivory, feeding on a variety of terrestrial food. However, the energetic benefit of most terrestrial food is small relative to their marine mammal prey and, in some regions, increased land use has been associated with declines in body condition. Reduced accessibility of seal prey to polar bears as a result of global climate change threatens the long-term sustainability of this Arctic predator.

Book chapter↗

Sea otter foraging behavior

Sea otters are marine specialists but diet generalists, which feed primarily on benthic mega-invertebrates (i.e., body dimension >1 cm). They locate and capture epibenthic and infaunal prey with their forepaws by relying on vision and tactile sensitivity during short-duration dives (generally <2 min) in shallow waters (routine dives <30 m and maximum dive depth ~100 m) of the littoral zone. Sea otters have an elevated resting metabolic rate and small or no energy reserves in the form of blubber, so they feed every 3–4 h. Foraging dives often occur in bouts (i.e., two or more consecutive dives), which may last several hours with 1–2 min between dives, depending on the type of prey. Sea otters consume small or soft prey entirely or use their teeth or stone tools to access the flesh of mega-invertebrates with a shell, test, or exoskeleton. The daily percentage of time that sea otters devote to foraging depends on age, sex, presence of a pup, time of year, and prey abundance, which varies geographically, seasonally, and episodically. In areas occupied by sea otters for many years, epifaunal prey generally decline first followed by infaunal species, and this may result in greater foraging effort and diet specialization associated with density-dependent competition for food. Although prey availability strongly influences sea otter carrying capacity, both intrinsic and extrinsic factors influence population equilibrium density, resulting in spatiotemporal variations in foraging behavior.

Book chapter↗

Sea otter predator avoidance behavior

Predators directly affect their prey as a source of mortality, and prey respond by employing antipredator strategies. Sea otters are a keystone predator within the nearshore community, but higher trophic level avian, terrestrial, and pelagic predators (e.g., bald eagles, brown bears, wolves, white sharks, and killer whales) prey on them. Three antipredator strategies used by sea otters are vigilance (group or sentinel detection of danger), avoidance (seeking a location that is inaccessible to predators), and crypsis (the ability to avoid observation or detection). Vigilant behavior allowed sea otters to escape total extinction during the Maritime Fur Trade of the eighteenth and nineteenth centuries. Female otters with pups practice vigilance when they reduce their foraging time and move along meandering paths. Sea otters usually rest at sea, and when they rest on shore, they usually haul out on offshore rocks, reefs, and small islands—possibly a behavioral response to terrestrial predators (brown bears and wolves can kill non-vigilant sea otters on shore). In areas where many sea otters haul out together, group vigilance may be important in detecting an approaching threat. Along the coast of central California, white sharks are a significant source of sea otter mortality, and the only antipredator strategy is avoidance or crypsis by resting in kelp beds. Despite the threat, sea otters still forage in open water, so the perception of risk may be low. In the western Aleutian Islands, killer whale predation is believed to be the cause of a > 90% decline in sea otters. As a result, sea otters perceive killer whales as a threat and limit their movements to shallow, complex habitats where the risk of attack is low. This behavioral response is so strong in the western Aleutian Islands that it may it limit sea otter dispersal among islands, with implications for the connectivity and genetic health of the small, isolated populations that remain.

Book chapter↗

Multivariate classification of the crude oil petroleum systems in southeast Texas, USA, using conventional and compositional data analysis of biomarkers

Chemically, petroleum is an extraordinarily complex mixture of different types of hydrocarbons that are now possible to isolate and identify because of advances in geochemistry. Here, we use biomarkers and carbon isotopes to establish genetic differences and similarities among oil samples. Conventional approaches for evaluating biomarker and carbon isotope relative abundances include statistical techniques such as principal component and cluster analysis. Considering that proportions of the different hydrocarbon molecules are relative parts of a laboratory sample, the data are compositional in nature, thus requiring the use of log-ratio approaches for adequate mathematical modeling. We apply both traditional and compositional modeling approaches to crude oil samples from an onshore area of about 50,000 square miles in southeast Texas. The data comprise 177 crude oil samples from producing oil fields that include key biomarkers, elemental, and isotopic values commonly used in source rock correlation studies. Our results indicate that compositional modeling has higher discriminating power and lower uncertainty than the traditional approach, allowing the identification of up to 16 clusters. Each cluster represents one oil family from a source rock organofacies ranging from Carboniferous to Paleogene. The families provide new insights into important petroleum systems in the Texas onshore region of the Gulf of Mexico sedimentary basin.

Texas↗

Permafrost thaw in northern peatlands: Rapid changes in ecosystem and landscape functions

Peatlands within the northern permafrost region cover approximately 2 million km 2 and are characterized by organic soils that can be several meters thick, and a fine-scale mosaic of permafrost and non-permafrost landforms interspersed by shallow ponds and lakes. Ongoing permafrost thaw is transforming these peatlands, causing abrupt changes to their morphology, hydrology, ecology, and biogeochemistry. In this review we show how changes to individual peatlands depend on both their Holocene developmental history and their location within current permafrost zones. Permafrost thaw in peatlands often leads to land surface collapse between 0.5 and 5 m, the so-called thermokarst. Thermokarst in peatlands can lead to the development of ice-wedge troughs, waterlogged thermokarst bogs and fens, and the initiation, expansion, and drainage of thermokarst lakes. Permafrost thaw in peatlands can thus completely alter vegetation composition and shift patterns of landscape inundation and hydrological connectivity. These changes in turn have implications for magnitude and timing of runoff, downstream water quality, habitat suitability for birds and larger mammals, traditional land-use, and the exchange of greenhouse gases with the atmosphere. Ongoing permafrost thaw is largely irreversible at relevant human time-scales, and peatland thermokarst has been accelerating over the last few decades. Complete permafrost loss is expected this century for peatlands in relatively warmer permafrost zones, and all peatlands in the northern permafrost region will be profoundly transformed by permafrost thaw.

Book chapter↗

Spatially integrating microbiology and geochemistry to reveal complex environmental health issues: Anthrax in the contiguous United States

Maxent models were run using the B. anthracis presence data and/or the animal outbreak presence data. Models run using the animal outbreak data alone utilized two scales: the Outbreak State scale which included only states reporting animal anthrax outbreaks from 2001 to 2013 and the National scale which included all states in the contiguous United States. Three iterations of the environmental data were used and included the Sample Location dataset which utilized the environmental variable data with assigned latitude and longitude locations from the USGS NASGLP project; the Normalized dataset which scaled the environmental variables so that the values fell between 0 and 1; and the Interpolated dataset which provided an interpolation of the environmental variables averaged for each county and assigned to a point for that county at the centroid (rather than using the NASGLP latitude and longitude location). Two metrics were used to measure model performance including the widely used area under the curve (AUC) and an alternative method, the True Skill Statistic (TSS). The AUC gives the probability that a randomly chosen presence location has been correctly ranked higher than the absence/background site. AUC values at 0.5 or lower mean the ranking is no better than random, while the AUC values nearer to 1 mean the model is a better predictor. The TSS provides a comparison of how well the background predictions made by the model match the model results at the test dataset (presence) locations. TSS values near +1 means the model approaches perfect agreement, while values near −1 indicate the model is no better than random. Maxent models to determine the influence of environmental factors on the B. anthracis distribution using the PCR data yielded a low TSS, which suggested the model might be underfitting the data. This was not surprising due to the difficulty in recovering B. anthracis in soil samples as well as the samples themselves being discrete in nature and only capturing a snapshot in time. Therefore, the distribution of B. anthracis and its niche in the contiguous United States could not be determined in this study. However, efforts to investigate environmental factors that would have a higher potential of supporting an anthrax outbreak in wildlife and livestock yielded better results. Results showed that most of the Maxent models in this study performed best when using the Outbreak State scale. When the models were scaled up to the National scale, model performance declined, except for the Normalized variable dataset. At the Outbreak State scale, a large proportion of the area was predicted to be of higher probability for wildlife/livestock anthrax outbreaks, and the statistical measures assumed the model was underfitting the data. The model with the highest AUC and TSS scores for this study was the Outbreak State scale using Sample Location dataset (AUC = 0.918 and TSS = 0.82). Some of the variables found to be closely related to the occurrence of B. anthracis in this study included pH, drainage potential, and concentration of elements including Na, Ca, Sr, and Mg, which have also been found to be related to animal outbreaks or to the occurrence of B. anthracis in previous studies. The models in the current study indicated possible regions that have not had recent wildlife/livestock anthrax outbreaks but contained environmental conditions that could potentially support an outbreak if one were to occur (Michigan and Maine). This work provides an extension to the use of ecological niche modeling to outbreak potential in livestock/wildlife in the United States because it utilizes additional soil geochemistry data and has shown that further validation techniques, such as the TSS, should be considered in addition to AUC. Results from this study could be used by animal and public health officials to identify areas with a higher potential for anthrax outbreak in wildlife and livestock due to naturally occurring soil and environmental conditions.

Book chapter↗

Fire and forests in the 21st century: Managing resilience under changing climates and fire regimes in USA forests

Higher temperatures, lower snowpacks, drought, and extended dry periods have contributed to increased wildfire activity in recent decades. Climate change is expected to increase the frequency of large fires, the cumulative area burned, and fire suppression costs and risks in many areas of the USA. Fire regimes are likely to change due to interactions among climate, fire, and other stressors and disturbances; resulting in persistent changes in forest structure and function. The remainder of the twenty-first century will present substantial challenges, as natural resource managers are faced with higher fire risk and the difficult task of maintaining ecological function in a rapidly changing biophysical and social landscape. Fuel treatments will continue to be important for minimizing the undesirable ecological effects of fire, and for enhancing firefighter safety; however, treatments must be implemented strategically across large areas. Collaboration among agencies, private landowners, and other organizations will be critical for ensuring resilience and sustainable forest management.

Book chapter↗

International importance of Percids: Summary and looking forward

Research presented in the preceding chapters emphasizes recent advancements in the research, management, and aquaculture of Walleye, Sauger, and Yellow Perch in North America. These percid fishes, along with the European Perch and Pikeperch, are economically and ecologically important fishes in their native geographic range. Advances in techniques to evaluate current habitat and predict future habitat conditions provide managers with detailed baseline information and biophysical models useful for evaluating adaptive management practices. Current habitat use and movement assessments have improved substantially with technological advancements in acoustic tags and extensive receiver array networks, which, combined with genetic and genomic tools, are improving percid stock assessments and management. Advances in percid aquaculture techniques have improved growth, survival, and disease resistance, enhancing percid stocking efforts and the production of marketable fish. The exchange of information between researchers and managers will continue to advance techniques of percid management for commercial and recreational exploitation and improve aquaculture practices to provide a lucrative commercial aquaculture industry.

Book chapter↗

The use of boundary-spanning organizations to bridge the knowledge-action gap in North America

The goals of boundary-spanning organizations include communicating among researchers, stakeholders, and resource managers to improve decision-making. These efforts span public agencies, environmental non-governmental organizations, and private stakeholders and occur throughout Canada, the USA, and Mexico. We describe how the core philosophy of boundary-spanning organizations may help address conservation challenges in these countries. We profile a subset of the more than 100 boundary-spanning organizations, identifying some of their core accomplishments and the challenges they face. Scientific information generally is acknowledged as useful to resource management by recipients of the information. It is more difficult to infer whether the information transmitted by boundary-spanning organizations contributed to conservation decisions or whether the outcomes of those decisions differed from the potential outcomes in the absence of such information. Several examples of sustained enthusiasm for boundary-spanning efforts indicate that the organizations help to bridge the knowledge to action gap in North America.

Book chapter↗

A review of the exploration, discovery, and characterization of highly concentrated gas hydrate accumulations in coarse-grained reservoir systems along the Eastern Continental Margin of India

The analysis of 3-D seismic data has become one of the most powerful ways to identify sand-rich gas hydrate reservoir systems and to directly identify highly concentrated gas hydrate prospects. Scientific drilling programs have shown that the occurrence of highly concentrated gas hydrate accumulations in coarse-grained, sand-rich, reservoir systems has a significant impact on the physical properties of sediments, allowing gas hydrates to be “directly detected” by conventional seismic analysis techniques. One of the most diagnostic responses of a gas hydrate-bearing sand reservoir is that of a high-velocity sedimentary section and an associated high-amplitude seismic response with a reflection polarity matching that of the seafloor. Knowledge of this physical relationship guided the Indian National Gas Hydrate Program Expedition 02 (NGHP-02) in their pre-drill site review and selection effort along the eastern continental margin of India in 2016. Within the planning, operational and post-operational data analysis phases of the NGHP-02 Expedition, scientists relied heavily on the analyses of the (1) pre-expedition acquired 3-D seismic data from offshore India, (2) downhole logging data acquired during NGHP-02 and (3) core samples and data obtained from NGHP-02 conventional- and pressure-cores to identify gas hydrates and assess the geologic controls on the formation and stability of these accumulations. Data analysis has confirmed the presence of extensive sand-rich depositional systems throughout the deepwater portions of the Krishna-Godavari and Mahanadi Basins in the Bay of Bengal. Two areas of the Krishna-Godavari Basin contain substantial gas hydrate accumulations in sand-rich systems, representing candidate sites for future potential energy exploitation.

Bay of Bengal, Krishna-Godavari Basin, Mahanadi Ba↗

Alaska North Slope terrestrial gas hydrate systems: Insights from scientific drilling

A wealth of information has been accumulated regarding the occurrence of gas hydrates in nature, leading to significant advancements in our understanding of the geologic controls on their occurrence in both the terrestrial and marine settings of the Arctic. Gas hydrate accumulations discovered in the Alaska North Slope have been the focus of several important geoscience and production testing research programs. The Mount Elbert Gas Hydrate Stratigraphic Test Well of 2007 yielded one of the most complete geologic datasets on Arctic gas hydrate systems and important reservoir engineering data. The 2011/2012 field test of the Iġnik Sikumi gas hydrate production test well provided important insight into gas hydrate production technologies, yielding additional information on the petrophysical properties of gas hydrate reservoir systems. The Hydrate-01 Stratigraphic Test Well, drilled late in 2018, confirmed the geologic conditions at an Alaska North Slope drill site that was selected for an extended gas hydrate production test. In 2018, the US Geological Survey used information derived from previous scientific drilling programs to assess the volume of undiscovered, technically recoverable gas resources at a mean estimate of about 54 trillion cubic feet (~1.5 trillion cubic meters) within the gas hydrates in the North Slope of Alaska. This assessment has shown that the amount of gas stored as gas hydrates in this area is equal to about half of the known volume of conventional natural gas resources in the region.

Alaska↗