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An introduction to high-frequency nutrient and biogeochemical monitoring for the Sacramento–San Joaquin Delta, northern California

Executive Summary This report is the first in a series of three reports that provide information about high-frequency (HF) nutrient and biogeochemical monitoring in the Sacramento–San Joaquin Delta of northern California (Delta). This first report provides an introduction to the reasons for and fundamental concepts behind collecting HF measurements, and describes the benefits associated with a real-time, continuous, HF, multi-parameter water quality monitoring station network that is co-located with flow stations. It then provides examples of how HF nutrient measurements have improved our understating of nutrient sources and cycling in aquatic systems worldwide, followed by specific examples from the Delta. These examples describe the ways in which HF instrumentation may be used for both fixed-station and spatial assessments. The overall intent of this document is to describe how HF measurements currently (2017) are being used in the Delta to examine the relationship between nutrient concentrations, nutrient cycling, and aquatic habitat conditions. The second report in the series (Downing and others, 2017) summarizes information about HF nutrient and associated biogeochemical monitoring in the northern Delta. The report synthesizes data available from the nutrient and water quality monitoring network currently operated by the U.S. Geological Survey in this ecologically important region of the Delta. In the report, we present and discuss the available data at various timescales—first, at the monthly, seasonal, and inter-annual timescales; and, second, for comparison, at the tidal and event (for example, storms, reservoir releases, phytoplankton blooms) timescales. As expected, we determined that there is substantial variability in nitrate concentrations at short timescales within hours, but also significant variability at longer timescales such as months or years. This multi-scale, high variability affects calculation of fluxes and loads, indicating that HF monitoring is necessary for understanding and assessing flux-based processes and outcomes in tidal environments, such as the Delta. The third report in the series (Bergamaschi and others, 2017) provides information about how to design HF nutrient and biogeochemical monitoring for assessment of nutrient inputs and dynamics in the Delta. The report provides background, principles, and considerations for designing an HF nutrient-monitoring network for the Sacramento–San Joaquin Delta to address high-priority, nutrient-management questions. The report starts with high-priority management questions to be addressed, continues with questions and considerations that place demands and constraints on network design, discusses the principles applicable to network design, and concludes with the presentation of three example nutrient‑monitoring network designs for the Delta. For the three example networks, we assess how they would address high-priority questions identified by the Delta Regional Monitoring Program (Delta Regional Monitoring Program Technical Advisory Committee, 2015).

California↗

Decision analysis in support of the National Elk Refuge bison and elk management plan

Preface This report was developed to evaluate the performance of a set of proposed alternatives for Cervus elaphus canadensis (elk) and Bison bison (bison) management at the National Elk Refuge (NER) in Wyoming, U.S.A., and to inform a National Environmental Policy Act Environmental Impact Statement focused on developing the next “Bison and Elk Management Plan” (BEMP). The U.S. Geological Survey facilitated a structured decision-making process for the U.S. Fish and Wildlife Service to develop the alternatives and the criteria (performance metrics) for evaluating the alternatives. Chapter A provides scoping details of the report, a summary of the 19 metrics that are used to evaluate the performance of each of 5 alternatives, and methodological details of 2 performance metrics that were not covered in other technical chapters. Chapter B analyzes elk population and chronic wasting disease dynamics under the five alternatives. Chapter C evaluates elk space-use based on data collected from global positioning system collars on elk and expert elicitation for scenarios with limited data. Chapter D evaluates bison population dynamics, conflict, and harvest patterns under the five alternatives. Chapter E assesses social and economic consequences. The alternatives are anticipated to have varying affects on bison and elk population abundance and private land use, wildlife-related recreation and tourism, and hunters and outfitters in the region. Each chapter was developed under advisement of a technical team, made up science experts from U.S. Fish and Wildlife Service, National Park Service, U.S. Forest Service, and Wyoming Game and Fish Department.

Scientific Investigations Report↗

Introduction

The inevitable increase in demand and continuing depletion of accessible oil and gas resources during the 21st century will cause greater dependence on energy minerals such as coal, uranium, and unconventional sources of oil and natural gas to satisfy our increasing energy needs. The Energy Minerals Division (EMD) of the American Association of Petroleum Geologists (AAPG) is a membership-based technical interest group with goals to: (1) advance the science of geology, especially as it relates to exploration, discovery, and production of mineral resources and subsurface gas and liquids (other than conventional oil and gas) for energy-related purposes; (2) foster the spirit of scientific research; (3) disseminate information related to the geology of energy minerals and the associated technology of energy mineral resources extraction; and (4) advance the professional wellbeing of its members. This article contains a brief summary of some of the 2006 annual committee reports presented to the EMD Leadership. These reports are available to the EMD Membership at http://emd.aapg.org/members_only. This collection of short reports is presented here by the EMD as a service to the general geologic community and to simulate interest in the focus technical areas of EMD.

Natural Resources Research↗

Delineation of flooding within the upper Mississippi River Basin — Flood of July 10 and 27, 1993, in Kansas City Missouri, and Kansas City, Kansas, and vicinity

During spring and summer 1993, record flooding inundated many of the stream and river valleys in the upper Mississippi and the Missouri River Basins. The flooding was the result of widespread and numerous intense thunderstorms that, together with saturated soils, produced large volumes of runoff. The magnitude of flooding exceeded the 100-year discharge values (1-percent chance of exceedance in any given year) at many streamflow-gaging stations in Illinois, Iowa, Kansas, Minnesota, Missouri, Nebraska, North Dakota, South Dakota, and Wisconsin. The flooding was unusual because of its long duration and widespread severe damage. The Mississippi and the Missouri Rivers were above flood stage for more than 1 month at several locations along their lengths. Millions of acres of agricultural and urban lands were inundated for weeks, and unofficial damage estimates exceeded $10 billion in the flooded States (Parrett and others, 1993), During summer 1993, large parts of Kansas City, Missouri, and Kansas City, Kansas, and vicinity were flooded from overflows of the Missouri and the Kansas Rivers and numerous smaller tributaries, This report provides flood-peak elevation data and delineates the arcalcktent of the 1993 floods in the Kansas City metropolitan area for July 10 and 27, 1993 (fig. 1A, sheet 1: B, sheet 2: C, sheet 3). The 1993 flood elevations and extent of flooding are compared with flood-plain boundaries defined by Flood Insurance Studies conducted by the Federal Emergency Management Agency (FEMA) for cities and counties in the area (U.S. Department of Housing and Urban Development, 1975–95). This report is one of a series of U.S. Geological Survey (USGS) investigations that document the effects of the 1993 flooding of the upper Mississippi and the Missouri River Basins and that improve the technical base from which flood-plain management decisions can be made by other agencies.

Kansas, Missouri↗

Apollo 12 voice transcript pertaining to the geology of the landing site

This document is an edited record of the conversations between the Apollo 12 astronauts and mission control pertaining to the geology of the landing site. It contains all discussions and observations documenting the lunar landscape, its geologic characteristics, the rocks and soils collected, and the lunar surface photographic record along with supplementary remarks essential to the continuity of events during the mission. This transcript is derived from audio tapes and the NASA Technical Air-to-Ground Voice Transcription and includes time of transcription, and photograph and sample numbers. The report also includes a glossary, landing site amp, and sample table.

Final Report↗

Assessment of potential additions to conventional oil and gas resources of the world (outside the United States) from reserve growth, 2012

The U.S. Geological Survey estimated volumes of technically recoverable, conventional petroleum resources resulting from reserve growth for discovered fields outside the United States that have reported in-place oil and gas volumes of 500 million barrels of oil equivalent or greater. The mean volumes were estimated at 665 billion barrels of crude oil, 1,429 trillion cubic feet of natural gas, and 16 billion barrels of natural gas liquids. These volumes constitute a significant portion of the world's oil and gas resources.

Fact Sheet↗

U.S. Geological Survey assessment of reserve growth outside of the United States

The U.S. Geological Survey estimated volumes of potential additions to oil and gas reserves for the United States by reserve growth in discovered accumulations. These volumes were derived by using a new methodology developed by the U.S. Geological Survey and reviewed by the American Association of Petroleum Geologists Committee on Resource Evaluation. This methodology was used to assess reserve growth in individual accumulations (reservoirs, groups of reservoirs, or fields). Selected, large, well-studied, conventional accumulations in the United States that are estimated to contribute most to reserve growth were assessed using analysis of geology and engineering practices. Potential additions to oil and gas reserves for large, discovered, conventional accumulations outside of the United States due to reserve growth were assessed using the U.S. accumulations as analogs. Potential oil and gas volumes were assumed to be added to proven plus probable reserves. The U.S. Geological Survey estimated volumes of technically recoverable, conventional petroleum resources resulting from reserve growth for discovered fields outside the United States that have reported in-place oil and gas volumes of 500 million barrels of oil equivalent or greater. The mean volumes of reserve growth were estimated at 665 billion barrels of crude oil; 1,429 trillion cubic feet of natural gas; and 16 billion barrels of natural gas liquids. These volumes constitute a significant portion of the world’s oil and gas resources and represent the potential future growth of current global reserves over time based on better assessment methodology, new technologies, and greater understanding of reservoirs.

Scientific Investigations Report↗

A manual for remote sensing of Maine lake clarity

The purpose of this manual is to support use of satellite-based remote sensing for statewide lake water-quality monitoring in Maine. The authors describe step-by-step methods that combine Landsat and MODIS satellite data with field-collected Secchi disk data for statewide assessment of lake water clarity. Landsat can be simul­taneously used to assess more than Maine 1,000 lakes ≥ 8 ha, whereas MODIS can be used to assess a maximum of 364 lakes ≥ 100 ha (250-m image resolution) or 83 lakes ≥ 400 ha (500-m image resolution). Although the methods were specifically developed for Maine, other states or non-Maine agen­cies may find these methods as useful starting points in developing their own protocols for regional remote lake monitoring.

Maine↗

Decision analysis in support of the National Elk Refuge bison and elk management plan

Preface This report was developed to evaluate the performance of a set of proposed alternatives for Cervus elaphus canadensis (elk) and Bison bison (bison) management at the National Elk Refuge (NER) in Wyoming, U.S.A., and to inform a National Environmental Policy Act Environmental Impact Statement focused on developing the next “Bison and Elk Management Plan” (BEMP). The U.S. Geological Survey facilitated a structured decision-making process for the U.S. Fish and Wildlife Service to develop the alternatives and the criteria (performance metrics) for evaluating the alternatives. Chapter A provides scoping details of the report, a summary of the 19 metrics that are used to evaluate the performance of each of 6 alternatives, and methodological details of 2 performance metrics that were not covered in other technical chapters. Chapter B analyzes elk population and chronic wasting disease dynamics under the five initial alternatives. Chapter C evaluates elk space-use based on data collected from global positioning system collars on elk and expert elicitation for scenarios with limited data. Chapter D evaluates bison population dynamics, conflict, and harvest patterns under the five initial alternatives. Chapter E assesses social and economic consequences. Chapter F is newly added to this superseding report and details the analysis and results of a new alternative that was developed after discussion among the lead and cooperating agencies working on the BEMP. The full set of six alternatives are anticipated to have varying affects on bison and elk population abundance and private land use, wildlife-related recreation and tourism, and hunters and outfitters in the region. Each chapter was developed under advisement of a technical team, made up science experts from U.S. Fish and Wildlife Service, National Park Service, U.S. Forest Service, and Wyoming Game and Fish Department.

Wyoming↗

Whole-coal versus ash basis in coal geochemistry: a mathematical approach to consistent interpretations

Several standard methods require coal to be ashed prior to geochemical analysis. Researchers, however, are commonly interested in the compositional nature of the whole-coal, not its ash. Coal geochemical data for any given sample can, therefore, be reported in the ash basis on which it is analyzed or the whole-coal basis to which the ash basis data are back calculated. Basic univariate (mean, variance, distribution, etc.) and bivariate (correlation coefficients, etc.) measures of the same suite of samples can be very different depending which reporting basis the researcher uses. These differences are not real, but an artifact resulting from the compositional nature of most geochemical data. The technical term for this artifact is subcompositional incoherence. Since compositional data are forced to a constant sum, such as 100% or 1,000,000 ppm, they possess curvilinear properties which make the Euclidean principles on which most statistical tests rely inappropriate, leading to erroneous results. Applying the isometric logratio (ilr) transformation to compositional data allows them to be represented in Euclidean space and evaluated using traditional tests without fear of producing mathematically inconsistent results. When applied to coal geochemical data, the issues related to differences between the two reporting bases are resolved as demonstrated in this paper using major oxide and trace metal data from the Pennsylvanian-age Pond Creek coal of eastern Kentucky, USA. Following ilr transformation, univariate statistics, such as mean and variance, still differ between the ash basis and whole-coal basis, but in predictable and calculated manners. Further, the stability between two different components, a bivariate measure, is identical, regardless of the reporting basis. The application of ilr transformations addresses both the erroneous results of Euclidean-based measurements on compositional data as well as the inconsistencies observed on coal geochemical data reported on different bases.

International Journal of Coal Geology↗

Geospatial data for coal beds in the Powder River Basin, Wyoming and Montana

The purpose of this report is to provide geospatial data for various layers and themes in a Geographic Information System (GIS) format for the Powder River Basin, Wyoming and Montana. In 2015, as part of the U.S. Coal Resources and Reserves Assessment Project, the U.S. Geological Survey (USGS) completed an assessment of coal resources and reserves within the Powder River Basin, Wyoming and Montana. This report is supplemental to USGS Professional Paper 1809 and contains GIS data that can be used to view digital layers or themes, including the Tertiary limit of the Powder River Basin boundary, locations of drill holes, clinker, mined coal, land use and technical restrictions, geology, mineral estate ownership, coal thickness, depth to the top of the coal bed (overburden), and coal reliability categories. Larger scale maps may be viewed using the GIS data provided in this report supplemental to the page-size maps provided in USGS Professional Paper 1809. Additionally, these GIS data can be exported to other digital applications as needed by the user. The database used for this report contains a total of 29,928 drill holes, of which 21,393 are in the public domain. The public domain database is linked to the geodatabase in this report so that the user can access the drill-hole data through GIS applications. Results of this report are available at the USGS Energy Resources Program Web site, http://energy.usgs.gov/RegionalStudies/PowderRiverBasin.aspx .

Montana, Wyoming↗

Guidelines for conducting reviews of geologic names and aquifer names in U.S. Geological Survey hydrogeologic maps and reports

Introduction The U.S. Geological Survey (USGS) is officially charged with assessment of various aspects of geology and hydrogeology throughout the Nation. Hence, USGS publications adhere to broadly uniform procedures in the classification and nomenclature of geologic and hydrogeologic units. Responsibility for this uniformity is under the technical guidance of the Geologic Names Committee (GNC), which formulates general policy and advises on specific nomenclatural issues. Central to the GNC proceedings is the North American Stratigraphic Code (hereafter referred to as “the Code”) (North American Commission on Stratigraphic Nomenclature [NACSN], 2021). Geologic reports typically contain geologic maps and cross sections, geologic unit names, lithologic descriptions, and stratigraphic correlation charts, as well as results of drilling activities and structure-contour, depth-to-top, depth-to-base, or sediment-thickness maps. Groundwater-resource maps and other hydrogeologic maps and reports can also contain many of these same elements. Groundwater-resource reports rarely contain original geologic mapping, revisions of stratigraphic nomenclature, or redefinitions or changes in the ranks or ages of geologic units; however, these reports usually contain descriptions and classifications of hydrogeologic units, and they also may introduce new or modify existing aquifer nomenclature. The following general guidance is published for those designated as geologic and aquifer names reviewers.

Professional Paper↗

Field techniques for fluorescence measurements targeting dissolved organic matter, hydrocarbons, and wastewater in environmental waters: Principles and guidelines for instrument selection, operation and maintenance, quality assurance, and data reporting

The use of field deployable fluorescence sensors by the U.S. Geological Survey has become increasingly common for a wide variety of surface water and groundwater investigations. This report addresses field deployable fluorometers that measure the fluorescence response of various substances in water exposed to incident light generated by the sensor. An introduction to the basic principles of field measurements of fluorescence is provided, as well as technical background information on sensors that target dissolved organic matter, wastewater, and hydrocarbons, including sensor selection, operating principles, key features, and design elements. General deployment, operation and maintenance protocols, quality-assurance techniques, and suggestions for data reporting are presented to facilitate and standardize the collection and accurate communication of data collected by the U.S. Geological Survey across studies, sites, and sensor types. Sensor performance issues and common interferences are also described. An appendix is included to describe sensor calibration criteria and procedures, reporting units, and specific approaches to correct for interferences for fluorescence of dissolved organic matter sensors.

Techniques and Methods↗

Development of a species status assessment process for decisions under the U.S. Endangered Species Act

Decisions under the U.S. Endangered Species Act (ESA) require scientific input on the risk that the species will become extinct. A series of critiques on the role of science in ESA decisions have called for improved consistency and transparency in species risk assessments and clear distinctions between science input and policy application. To address the critiques and document the emerging practice of the U.S. Fish and Wildlife Service (USFWS), we outline an assessment process based on principles and practices of risk and decision analyses that results in a scientific report on species status. The species status assessment (SSA) process has three successive stages: 1) document the life history and ecological relationships of the species in question to provide the foundation for the assessment, 2) describe and hypothesize causes for the current condition of the species, and 3) forecast the species' future condition. The future condition refers to the ability of a species to sustain populations in the wild under plausible future scenarios. The scenarios help explore the species' response to future environmental stressors and to assess the potential for conservation to intervene to improve its status. The SSA process incorporates modeling and scenario planning for prediction of extinction risk and applies the conservation biology principles of representation, resiliency, and redundancy to evaluate the current and future condition. The SSA results in a scientific report distinct from policy application, which contributes to streamlined, transparent, and consistent decision-making and allows for greater technical participation by experts outside of the USFWS, for example, by state natural resource agencies. We present two case studies based on assessments of the eastern massasauga rattlesnake Sistrurus catenatus and the Sonoran Desert tortoise Gopherus morafkai to illustrate the process. The SSA builds upon the past threat-focused assessment by including systematic and explicit analyses of a species' future response to stressors and conservation, and as a result, we believe it provides an improved scientific analysis for ESA decisions.

Journal of Fish and Wildlife Management↗

Panel review of Ground Motion Characterization Model in 2023 NSHM

The 2023 National Seismic Hazard Model (NSHM; Petersen et al., 2023) has two major components – a seismic source characterization (SSC) model and a ground motion characterization (GMC) model. The US Geological Survey (USGS) established separate panels to review and provide input on these two models. Both panels are advisory, meaning that they provide input on technical issues for consideration by the USGS NSHM team, but they do not have decision making authority. Here, we report on the activities and recommendations of the Ground Motion Characterization Panel, made up of the authors of this review. Final modeling decisions are presented in separate USGS documents, including Petersen et al., (2023) and Moschetti et al., (2023). Where modeling decisions depart from our recommendations, the rationale is explained in those publications.

Report↗