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USGS2016

Continuous-flow centrifugation to collect suspended sediment for chemical analysis

Recent advances in suspended-sediment monitoring tools and surrogate technologies have greatly improved the ability to quantify suspended-sediment concentrations and to estimate daily, seasonal, and annual suspended-sediment fluxes from rivers to coastal waters. However, little is known about the chemical composition of suspended sediment, and how it may vary spatially between water bodies and temporally within a single system owing to climate, seasonality, land use, and other natural and anthropogenic drivers. Many water-quality contaminants, such as organic and inorganic chemicals, nutrients, and pathogens, preferentially partition in sediment rather than water. Suspended sediment-bound chemical concentrations may be undetected during analysis of unfiltered water samples, owing to small water sample volumes and analytical limitations. Quantification of suspended sediment‑bound chemical concentrations is needed to improve estimates of total chemical concentrations, chemical fluxes, and exposure levels of aquatic organisms and humans in receiving environments. Despite these needs, few studies or monitoring programs measure the chemical composition of suspended sediment, largely owing to the difficulty in consistently obtaining samples of sufficient quality and quantity for laboratory analysis. A field protocol is described here utilizing continuous‑flow centrifugation for the collection of suspended sediment for chemical analysis. The centrifuge used for development of this method is small, lightweight, and portable for the field applications described in this protocol. Project scoping considerations, deployment of equipment and system layout options, and results from various field and laboratory quality control experiments are described. The testing confirmed the applicability of the protocol for the determination of many inorganic and organic chemicals sorbed on suspended sediment, including metals, pesticides, polycyclic aromatic hydrocarbons, and polychlorinated biphenyls. The particle-size distribution of the captured sediment changes to a more fine-grained sample during centrifugation, and the necessity to account for this change when extrapolating chemical concentrations on the centrifuged sediment sample to the environmental water system is discussed. The data produced using this method will help eliminate a data gap of suspended sediment-bound chemical concentrations, and will support management decisions, such as chemical source-control efforts or in-stream restoration activities. When coupled with streamflow and sediment flux data, it will improve estimates of riverine chemical fluxes, and will aid in assessing the importance and impacts of suspended sediment-bound chemicals to downstream freshwater and coastal marine ecosystems.

Techniques and Methods↗
USGS2008

Chapter A7 Biological Indicators

The National Field Manual for the Collection of Water-Quality Data (National Field Manual) provides guidelines and standard procedures for U.S. Geological Survey (USGS) personnel who collect data used to assess the quality of the Nation's surface-water and ground-water resources. This chapter of the manual includes procedures for the (1) determination of biochemical oxygen demand using a 5-day bioassay test; (2) collection, identification, and enumeration of fecal indicator bacteria; (3) collection of samples and information on two laboratory methods for fecal indicator viruses (coliphages); and (4) collection of samples for protozoan pathogens. Each chapter of the National Field Manual is published separately and revised periodically. Newly published and revised chapters will be announced on the USGS Home Page on the World Wide Web under 'New Publications of the U.S. Geological Survey.'

Techniques of Water-Resources Investigations↗
USGS2003

Chapter A7. Section 7.2. Fecal Indicator Viruses

More than 100 types of human pathogenic viruses may be present in fecal-contaminated waters. Coliphages are used as indicators of virus-related fecal contamination and of the microbiological quality of waters. This report provides information on the equipment, sampling protocols, and laboratory methods that are in standard use by U.S. Geological Survey (USGS) personnel for the collection of data on fecal indicator viruses. Each chapter of the National Field Manual is published separately and revised periodically. Newly published and revised chapters will be announced on the USGS Home Page on the World Wide Web under 'New Publications of the U.S. Geological Survey.'

Techniques of Water-Resources Investigations↗
USGS2000

Phosphorus and E. coli in the Fanno and Bronson Creek subbasins of the Tualatin River basin, Oregon, during summer low-flow conditions, 1996

As part of an ongoing cooperative study between the Unified Sewerage Agency of Washington County, Oregon, and the U.S. Geological Survey, phosphorus and Escherichia coli (E. coli) concentrations were measured in the Fanno and Bronson Creek subbasins of the Tualatin River Basin during September 1996. Data were collected at 19 main-stem and 22 tributary sites in the Fanno Creek subbasin, and at 14 main-stem and 4 tributary sites in the Bronson Creek subbasin. These data provided the following information on summer base-flow conditions in the subbasins. Concentrations of total phosphorus at 70% of the sites sampled in the Fanno Creek subbasin were between 0.1 and 0.2 mg/L (milligrams per liter), very near the estimated background level of 0.14 mg/L attributed to ground-water base flow. These data indicate that ground-water discharge could account for the phosphorus measured at most sites in this subbasin.Concentrations of phosphorus at all but one of the sites sampled in the Bronson Creek subbasin were also between 0.1 and 0.2 mg/L, indicating that ground-water discharge could account for the phosphorus measured at most sites in this subbasin.A few sites in the Fanno Creek subbasin had phosphorus concentrations above background levels, indicating a source other than ground water. Some of these sites- Pendleton Creek and the tributary near Gemini, for example-were probably affected by the decomposition of avian waste materials and the release of phosphorus from bottom sediments in nearby ponds.Concentrations of E. coli--an indicator of fecal contamination and the potential presence of bacterial pathogens-exceeded the current single-sample criterion for recreational contact in freshwater (406 organisms/100 mL [organisms per 100 milliliters]) at 70% of the sites sampled in the Fanno Creek subbasin.Concentrations of E. coli in the Bronson Creek subbasin exceeded the single-sample criterion at one-third of the sites sampled.Most occurrences of elevated E. coli levels were probably due to sources such as domestic pet and wildlife waste, failing septic systems, or improperly managed hobby farms. The data did not indicate any large breaks in sewer lines or other large-scale sources of bacterial contamination to surface water in either subbasin during this low-flow period.

Oregon↗
USGS2000

Occurrence of fecal coliform bacteria in selected streams in Wyoming, 1990-99

The U.S. Geological Survey (USGS), in cooperation with the Wyoming Department of Environmental Quality (WDEQ), is collecting water samples for analysis of fecal coliform bacteria at 18 stream sites as part of a statewide network. Contamination by bacteria of fecal origin in streams where contact recreation is a designated water use is a concern because of potential public-health risk from the presence of enteric pathogens. Fecal coliform concentrations are temporally and spatially variable in Wyoming streams-concentrations ranged from less than 1 to 45,000 colonies per 100 milliliters of water during 1990-99. Fecal coliform concentrations were less than the water-quality criterion of 400 colonies per 100 milliliters in 83 percent of the samples, indicating fecal coliform contamination is not a widespread problem in these Wyoming streams. However, 14 of the 18 monitoring sites had at least one sample in which the fecal coliform concentration exceeded 400 colonies per 100 milliliters at some time during the 10-year period. Fecal coliform concentrations generally are higher during April through September than during October through March. The higher concentrations coincide with the time period when the public-health risk is higher because summer months are when contact recreation use is more likely occurring. Fecal coliform concentrations were positively correlated with discharge and stream temperature and generally were negatively correlated with pH, specific conductance, and dissolved oxygen.

Wyoming↗
USGS2000

Reconnaissance of the hydrology, water quality, and sources of bacterial and nutrient contamination in the Ozark Plateaus aquifer system and Cave Springs Branch of Honey Creek, Delaware County, Oklahoma, March 1999-March 2000

A reconnaissance investigation of hydrology and water quality was conducted to evaluate possible sources of bacteria and nutrient contamination in the Cave Springs Branch basin and the underlying karstic Ozark Plateau aquifer system. Objectives were to: (1) determine the directions of ground-water flow in the basin and determine whether Cave Springs Branch interacts with ground water, (2) compare water quality in Cave Springs Branch with water quality in nearby wells to determine whether the stream is contaminating nearby wells, and (3) determine sources of fecal coliform bacteria and nitrate contamination in Cave Springs Branch and ground water. Potential sources of bacteria and nitrate in the area include cultivated agriculture, cow and horse on pasture, poultry production, households, and wildlife. Presence of fecal coliform and fecal streptococcal bacteria directly indicate fecal contamination and the potential for the presence of other pathogenic organisms in a water supply. Nitrate in drinking water poses health risks and may indicate the presence of additional contaminants. Fecal coliform bacteria colony counts were least in wells, intermediate in the poultry-processing plant wastewater outfall and Honey Creek above the confluence with Cave Springs Branch, and greatest in Cave Springs Branch. Bacteria strains and resistance to antibiotics by some bacteria indicate that livestock may have been sources of some bacteria in the water samples. Multiple antibiotic resistances were not present in the isolates from the water samples, indicating that the bacteria may not be from human or poultry sources. Ribotyping indicates that Escherichia coli bacteria in water samples from the basin were from bird, cow, horse, dog, deer, and human sources. The presence of multiple ribotypes from each type of animal source except bird indicates that most of the bacteria are from multiple populations of source animals. Identifiable sources of bacteria in Cave Springs Branch at the state line were dominantly cow and horse with one ribotype from bird. Escherichia coli was detected in only one well sample. Bacterial ribotypes in water from that upgradient well indicated human and dog feces as sources for bacteria, and that on site wastewater treatment may not always be adequate in these highly permeable soils. Greater concentrations of nitrate in Cave Springs Branch and O'Brien Spring relative to the poultry-processing plant wastewater outfall may be due, in part, to conversion of ammonia from poultry processing plant wastewater. The poultry-processing plant wastewater outfall sample collected in March 2000 contained greater concentrations of ammonia and total organic nitrogen plus ammonia than the spring, stream, and well samples collected during August 1999. Cave Springs Branch and Honey Creek contributed approximately equal loads of nitrogen to Honey Creek below the confluence and the greatest loads of nitrogen were introduced to Cave Springs Branch by the poultry processing plant wastewater outfall and O'Brien Spring. Nitrate concentrations in upgradient well samples ranged from 0.38 to 4.60 milligrams per liter, indicating that there are sources of ground-water nitrogen other than Cave Springs Branch, such as animal waste, fertilizer, or human waste. Nitrogen compounds in water from wells downgradient of Cave Springs Branch may be from Cave Springs Branch, fertilizers, animal waste, or human waste.

Oklahoma↗
USGS2001

Assessment of water-quality conditions in the J.B. Converse Lake watershed, Mobile County, Alabama, 1990-98

J.B. Converse (Converse) Lake is a 3,600-acre, tributary-storage reservoir in Mobile County, southwestern Alabama. The lake serves as the primary drinking-water supply for the city of Mobile. The Converse Lake watershed lies within the Coastal Plain Physiographic Province. Semiconsolidated to unconsolidated sediments of sand, silt, gravel, and clay underlie the watershed, and are covered by acidic soils. Land use in the watershed is mainly forest (64 percent) and agriculture (31 percent). Residential and commercial development account for only 1 percent of the total land use in the watershed. Converse Lake receives inflow from seven major tributaries. The greatest inflows are from Big Creek, Crooked Creek, and Hamilton Creek that had mean annual streamflows of 72.2, 19.4, and 25.0 cubic feet per second, respectively, for the period 1990 to 1998, which represents about 72 percent of the total annual streamflow to the lake. The total mean annual inflow to the lake is estimated to be about 163 cubic feet per second. In general, water quality in Converse Lake and its tributaries meets the criteria established by the Alabama Department of Environmental Management (ADEM) for drinking-water supplies, whole-body contact, and aquatic life. The exceptions include acidic pH levels, iron and manganese levels above secondary or aesthetic criteria, and fecal bacterial levels in some tributaries above whole-body contact (swimmable) criteria. The pH levels throughout the watershed were commonly below the criteria level of 6.0, but this appears to have been a naturally occurring phenomenon caused by poorly buffered soil types, resistant sediments, and forested land use. Median iron and manganese levels were above aesthetic criteria levels of 300 and 50 micrograms per liter, respectively, in some tributaries. All tributary sites in the Converse Lake watershed had median and minimum dissolved-oxygen concentrations above the ADEM criteria level of 5 milligrams per liter except for Boggy Branch, which had a minimum dissolved-oxygen concentration of 3.7 milligrams per liter. The degree to which nutrient contributions from tributaries were causing nutrient enrichment and eutrophication in Converse Lake was assessed. Trend analysis detected little or no change in nutrient concentrations at the tributary and lake sites in the Converse Lake watershed from the 1991 to 1998 water years. Nutrient concentrations at most tributary sites exhibited a significant, positive relation with streamflow that indicated the dominant source of nutrient input to the watershed is from nonpoint contributions. From 1990 to 1998, computed mean annual loads of 75,400 kilograms of total nitrogen, 36,950 kilograms of total Kjeldahl nitrogen, 28,870 kilograms of total inorganic nitrogen, and 3,480 kilograms of total phosphorus were contributed to the lake by Big Creek, Hamilton Creek, and Crooked Creek combined. These mean annual loads of nutrients corresponded to borderline eutrophic/mesotrophic conditions in the lake. Of the combined loads, 62 percent of the total nitrogen, 70 percent of the total Kjeldahl nitrogen, 54 percent of the total inorganic nitrogen, and 47 percent of the total phosphorus originated from the forested subbasin of Big Creek. The more residential and agricultural subbasins of Crooked Creek and Hamilton Creek, however, yielded over twice the total phosphorus load per hectare of land use. Crooked and Hamilton Creek subbasins also had higher yields of the more bioavailable total inorganic nitrogen. A simplistic empirical model could not explain the relation between year-to-year nutrient contributions to Converse Lake from the tributaries and the lake's ability to assimilate those contributions. The potential presence of pathogens in the lake and its tributaries was assessed based on fecal bacterial concentrations. Fecal bacterial concentrations at some tributary sites were above existing criteria for swimmable uses. Contributions of fecal bacte

Water-Resources Investigations Report↗
USGS2003

Klamath River Basin Hydrologic Conditions Prior to the September 2002 Die-Off of Salmon and Steelhead

More than 33,000 salmon and steelhead died in the lower Klamath River in late September 2002 on their way to spawning areas upstream. According to the California Department of Fish and Game, the cause of death was infection by protozoan and bacterial pathogens. Two factors that may have contributed to the disease incidence are low streamflow and high water temperature. September streamflows throughout the Klamath Basin were low, among the four lowest September flows recorded on the main stem since 1960. The low streamflows were caused by below-average snowpack and long-term drought, with resulting reduced ground-water discharge to streams. On the basis of historical climate data from the Klamath Basin and historical water temperature data from an adjacent basin, September 2002 water temperatures were above the long-term average. Temperatures in the Klamath River above the fish die-off reach exceeded 65 degrees Fahrenheit for nearly all of September; multiple days of exposure by fish to temperatures at or above that level can greatly increase disease incidence. This report characterizes streamflow and water temperature conditions during the period leading up to the die-off and compares them to historical conditions in the Klamath River. This report is not an exploration of the causative mechanism of the die-off; rather, it is intended to provide detailed documentation of these conditions to be used by those examining the cause(s) of the die-off and to provide information that can contribute to decisions about future water management in the Klamath Basin.

Water-Resources Investigations Report↗
USGS2000

Fecal-coliform bacteria concentrations in streams of the Chattahoochee River National Recreation Area, Metropolitan Atlanta, Georgia, May–October 1994 and 1995

The Metropolitan Atlanta area has been undergoing a period of rapid growth and development. The population in the 10-county metropolitan area almost doubled from about 1.5 million people in 1970 to 2.9 million people in 1995 (Atlanta Regional Commission, written commun., 2000). Residential, commercial, and other urban land uses more than tripled during the same period (Frick and others, 1998). The Chattahoochee River is the most utilized water resource in Georgia. The rapid growth of Metropolitan Atlanta and its location downstream of the headwaters of the drainage basin make the Chattahoochee River a vital resource for drinking-water supplies, recreational opportunities, and wastewater assimilation. In 1978, the U.S. Congress declared the natural, scenic, recreation, and other values of 48 miles of the Chattahoochee River from Buford Dam to Peachtree Creek to be of special national significance. To preserve this reach of the Chattahoochee River, the U.S. Congress created the Chattahoochee River National Recreational Area (CRNRA), which includes the Chattahoochee River downstream from Buford Dam to the mouth of Peachtree Creek and a series of park areas adjacent to the river in northern Metropolitan Atlanta Even with this protection, waters of the Chattahoochee River and many of its tributaries in Metropolitan Atlanta did not meet water-quality standards set for designated uses during 1994 and 1995 (fig. 1 and table 1). Much of the degradation of water quality has been associated with areas undergoing rapid urban growth and sprawling suburban development. The resulting conversion of mostly forested land to urban land has multiple adverse effects on water quality. Degradation of water quality may be caused by a number of factors including an increase in nutrient concentrations, sediment and sedimentbound contaminant concentrations (e.g., metals and pesticides) (Frick and others, 1998), and fecal-coliform bacteria concentrations (Center for Watershed Protection, 1999). The presence of fecal-coliform bacteria in streams and rivers indicates that contamination by fecal material from human or animal sources has occurred and contact with these waters can result in exposure to pathogenic bacteria often associated with fecal contamination. During 1994 and 1995, elevated concentrations of fecal-coliform bacteria were the most common reason that the Chattahoochee River and tributaries did not meet their designated uses of drinking-water supply, recreation, and fishing. According to the Georgia Department of Natural Resources (1997), during 1994 and 1995, 67 of 77 stream reaches assessed in Metropolitan Atlanta did not meet or only partially met water-quality requirements for designated uses. Excessive concentrations of fecal-coliform bacteria were a contributing factor in 63 of the 67 streams that did not meet or only partially met designated uses. High concentrations of fecal-coliform bacteria have the potential to reduce the recreational value of the river and pose a continued threat, with unknown health risks, to humans that come in contact with the water while fishing, boating, rafting, wading, and swimming.

Georgia↗
USGS1999

Fecal coliform and Escherichia coli bacteria in the St. Croix National Scenic Riverway, Summer 1999

Fecal coliform and Escherichia coli ( E. coli ) concentrations were determined in the St. Croix National Scenic Riverway to assess whether pathogenic organisms pose a potential problem for recreational use. Samples were collected from May through September 1999 at 22 locations on the St. Croix and Namekagon Rivers. No concentrations exceeded water-quality criteria or standards set by the U.S. Environmental Protection Agency or the states of Minnesota and Wisconsin. Maximum fecal coliform and E. coli concentrations were measured in the St. Croix River at St. Croix Falls, Wisconsin. Median fecal coliform and E. coli concentrations were greater in the St. Croix River near Woodland Corner, Wisconsin, and at Marine on St. Croix, Minnesota than at other locations sampled. There were no consistent short-term variations in fecal coliform or E. coli concentrations during the summer period or any significant relations between concentrations and stream discharge, based on these results.

Minnesota, Wisconsin↗
USGS1984

Sanitary quality of the Jordan River in Salt Lake County, Utah

This investigation of the sanitary quality of the Jordan River was conducted from July 1980 to October 1982 using indicator bacteria rather than specific pathogens. A serious sanitary problem was identified. Concentrations of total coliform bacteria often exceeded 5,000 colonies per 100 milliliters and concentrations of fecal coliform bacteria often exceeded 2,000 colonies per 100 milliliters in the lower reaches of the river. At times these levels were greatly exceeded. The most conspicuous aspect of the bacteriological data is its extreme variability. Seven waste-water treatment plants, seven major tributaries, numerous storm conduits, irrigation-return flow, and other sources all contribute to the dynamic system that determines the sanitary quality of the river. Because of this variability the sanitary quality of the river cannot be predicted at any one time. In general, concentrations of all three indicator bacteria increased in a downstream direction. Storm runoff from urban areas contributed large concentrations of indicator bacteria to the river. Regression analysis of 9 years of data collected at 1700 South Street showed a significant positive correlation between both fecal coliform and fecal streptococcal concentrations versus time. Concentrations of fecal coliform and fecal streptococci have both been increasing since 1974 at 1700 South Street. (USGS)

Water-Resources Investigations Report↗
USGS1988

Water resources of Oley Township, Berks County, Pennsylvania

Oley Township covers an area of 24 square miles, about half of which is underlain by highly permeable carbonate rocks. Nondomestic wells in these rocks typically have yields of 200 gallons per minute, and some wells yield more than 1,000 gallons per minute. Ground-water yield for Oley Township is about 0.5 million gallons per day per square mile. Thus, about 12 million gallons per day could be pumped from wells on a sustained basis. However, pumping this amount would adversely affect streamflow. A series of discharge measurements on Manatawny Creek in January 1983 showed that the creek was gaining approximately 12 cubic feet per second where it crosses the more- permeable carbonate rocks. Thus, the streams are directly connected to these aquifers. The northern and western parts of the township are mostly underlain by shale, quartzite, granite, gneiss, and carbonate rocks of low permeability, and some wells do not yield enough water for domestic supplies. A water-table map shows that two active quarries in low-permeability rocks have had little effect on the hydrologic system. Specific yields are about 4.5 percent for the carbonate rocks; 5 percent for quartzite, granite, and gneiss; 1 percent for the noncarbonate sedimentary rocks; and 1.5 percent for the Jacksonburg Limestone, which consists of argillaceous limestone. In 1982--a year of average precipitation--the ground-water contribution to total streamflow ranged from 56 to 88 percent. Basins with the highest percentage of carbonate rock contribute the largest amount of ground water to streamflow. Evapotranspiration averaged about 26 inches in 1982. Water loss was 32 inches in the Limekiln Creek basin; this suggests that about 6 inches of precipitation bypassed the Limekiln Creek gaging station as ground-water underflow. The most serious water-quality problems are excessive nitrate concentrations and bacterial contamination. Water from 3 of 19 wells in carbonate rocks had nitrate concentrations in excess of the U.S. Environmental Protection Agency maximum contaminant level of 10 milligrams per liter. Water from 5 of the 19 wells had fecal streptococci counts of more than 20 colonies per 100 milliliters. Although most agencies concerned with the protection of public health have not set limits for fecal streptococci, they are pathogenic, and their presence in drinking water is undesirable.

Water-Resources Investigations Report↗
USGS1994

Ground-Water Quality Reconnaissance, Tutuila, American Samoa, 1989

In May and July 1989, 19 ground-water samples were collected from 17 of the 35 water-supply wells on the island of Tutuila, American Samoa. Samples were analyzed for temperature, pH, hardness, specific conductance, turbidity, total and fecal coliform bacteria, major ions, major nutrients, 12 common metals, and 66 organic compounds. Chemical analysis of the water samples shows that, after chlorination, sampled ground water was in compliance with U.S. Environmental Protection Agency primary drinking-water regulations. Fourteen of the 19 samples were collected before the water was chlorinated in the water distribution system, and five were collected after chlorination. Seven of the 14 unchlorinated samples contained coliform bacteria and five of the seven contained fecal coliform bacteria, indicating potential contamination from disease-causing pathogens. All five of the chlorinated samples contained trace levels of trihalomethanes, but at concentrations below U.S. Environmental Protection Agency maximum contaminant levels. Trihalomethanes were the only organic constituents detected. Concentrations of total dissolved solids in the 19 samples ranged from about 100 to 2,400 milligrams per liter. Four samples had concentrations of total dissolved solids and chloride that exceeded the U.S. Environmental Protection Agency secondary drinking-water regulations of 500 and 250 milligrams per liter, respectively. For samples with less than 300 milligrams per liter of dissolved solids, sodium, calcium, magnesium, and bicarbonate were the dominant ions, indicating that they were derived from dissolution of minerals and carbon-dioxide enrichment of recharge water. For samples with greater than 300 milligrams per liter of dissolved solids, sodium and chloride were the dominant ions, indicating increased mixing of ground water with seawater.

Water-Resources Investigations Report↗
USGS1995

Effect of the Cedar River on the quality of the ground-water supply for Cedar Rapids, Iowa

The Surface Water Treatment Rule under the 1986 Amendment to the Safe Drinking Water Act requires that public-water supplies be evaluated for susceptibility to surface-water effects. The alluvial aquifer adjacent to the Cedar River is evaluated for biogenic material and monitored for selected water-quality properties and constituents to determine the effect of surface water on the water supply for the City of Cedar Rapids, Iowa. Results from monitoring of selected water-quality properties and constituents showed an inverse relation to river stage or discharge. Water-quality properties and constituents of the alluvial aquifer changed as water flowed from the river to the municipal well as a result of drawdown. The values of specific conductance, pH, temperature, and dissolved oxygen at observation well CRM-4 and municipal well Seminole 10 generally follow the trends of values for the Cedar River. Values at observation well CRM-3 and the municipal water-treatment plant showed very little correlation with values from the river. The traveltime of water through the aquifer could be an indication of the susceptibility of the alluvial aquifer to surface-water effects. Estimated traveltimes from the Cedar River to municipal well Seminole 10 ranged from 7 to 17 days. Above-normal streamflow and precipitation during the study could have increased the effect the river had on the alluvial aquifer and on the possibility of contamination by a pathogen. Microscopic particulate analysis of 29 samples found no Giardia cysts or Crytosporidium oocysts in water collected from municipal wells. Data also indicate that the aquifer is filtering out large numbers of algae, diatoms, rotifers, and nematodes as well as filtering out Cryptosporidium , Giardia , and other protozoa. The number of algae, diatoms, rotifers, protozoa, and vegetative debris for selected municipal wells tested showed at least a reduction to 1 per 1,000 of the number found in the river. A relative risk factor and a log-reduction rate were determined for the aquifer in the vicinity of selected wells. One municipal well had a high-risk factor, three other wells had a moderate-risk factor, and four wells had a low-risk factor. The filtering efficiency of the aquifer is equivalent to a 3 log-reduction rate or 99.99-percent reduction in particulates.

Iowa↗
USGS1998

Effects of hydrologic, biological, and environmental processes on sources and concentrations of fecal bacteria in the Cuyahoga River, with implications for management of recreational waters in Summit and Cuyahoga Counties, Ohio

Discharges of fecal bacteria (fecal coliform bacteria and Escherichia coli ) to the middle main stem of the Cuyahoga River from storm water, combined sewers, and incompletely disinfected wastewater have resulted in frequent exceedances of bacteriological water-quality standards in a 23-mile reach of the river that flows through the Cuyahoga Valley National Recreation Area. Contamination of the middle main stem of the Cuyahoga River by bacteria of fecal origin and subsequent transport to downstream areas where water-contact recreation is an important use of the river are a concern because of the potential public-health risk from the presence of enteric pathogens. Independent field investigations of bacterial decay, dilution, dispersion, transport, and sources, and bacterial contamination of streambed sediments, were completed in 1991-93 during periods of rainfall and runoff. The highest concentration of fecal coliform bacteria observed in the middle main stem during three transport studies exceeded the single-sample fecal coliform standard applicable to primary-contact recreation by a factor of approximately 1,300 and exceeded the Escherichia coli standard by a factor of approximately 8,000. The geometric-mean concentrations of fecal bacteria in the middle main stem were 6.7 to 12.3 times higher than geometric-mean concentrations in the monitored tributaries, and 1.8 to 7.0 times larger than the geometric-mean concentrations discharged from the Akron Water Pollution Control Station. Decay rates of fecal bacteria measured in field studies in 1992 ranged from 0.0018 per hour to 0.0372 per hour for fecal coliform bacteria and from 0.0022 per hour to 0.0407 per hour for Escherichia coli. Most of the decay rates measured in June and August were significantly higher than decay rates measured in April and October. Results of field studies demonstrated that concentrations of fecal coliform bacteria were 1.2 to 58 times higher in streambed sediments than in the overlying water. Sediments are likely to be a relatively less important source of fecal bacteria during rainfall and runoff in the middle main stem relative to bacterial loading from point sources. Numerical streamflow and transport simulation models were calibrated and verified with data collected during field studies. Of the constituents modeled, bacteria exhibited the poorest correspondence between observed and simulated values. The simulation results for a dye tracer indicated that the model reasonably reproduced the timing of dissolved constituents as well as dilution and dispersion effects. Calibrated and verified models for 1991 and 1992 data sets were used to simulate the improvements to bacteriological water quality that might result from reductions in concentrations of fecal bacteria discharged from two major sources. The model simulation resulting in the greatest improvement in bacteriological water-quality was one in which concentrations of fecal coliform bacteria and Escherichia coli were reduced by 90 percent in the Cuyahoga River at the Old Portage gaging station, and to geometric-mean bathing-water standards in the effluent of the Akron Water Pollution Control Station (BWS/90 scenario). Compared to the results of the base-simulation, when the BWS/90 scenario was applied in the 1991 model simulation, Escherichia coli concentrations were reduced 98.5 percent at Botzum, 97.5 percent at Jaite, and 91.1 percent at Independence. For 1992 model simulations, similar percent reductions in the concentrations of Escherichia coli were predicted at the three stream sites when the same reductions were applied to sources. None of the model simulations resulted in attainment of bacteriological water-quality standards. The potential benefits of source reductions to human health and recreational uses were estimated by comparing the number of illnesses per 1,000 people from concentrations of Escherichia coli associated with the BWS/90 simulation, with the base simulation, and with the geometric-mean standard for Escherichia coli. The predicted 22 to 26 illnesses per 1,000 people predicted by the E. coli concentrations resulting from BWS/90 simulation are 2.8 to 3.3 times higher than the 8 illnesses per 1,000 people associated with the geometric-mean primary-contact water-quality standard for Escherichia coli. Risks associated with the base simulation are 4.6 to 4.9 times higher than that associated with the geometric-mean primary- contact water-quality standard for Escherichia coli. The illness risks predicted from the BWS/90 scenario, although larger than acceptable, would nevertheless be an improvement over conditions that were encountered during field studies in 1991-93.

Ohio↗
USGS1999

Environmental setting and water-quality issues in the lower Tennessee River basin

The goals of the National Water-Quality Assessment Program are to describe current water-quality conditions for a large part of the Nation's water resources, identify water-quality changes over time, and identify the primary natural and human factors that affect water quality. The lower Tennessee River Basin is one of 59 river basins selected for study. The water-quality assessment of the lower Tennessee River Basin study unit began in 1997. The lower Tennessee River Basin study unit encompasses an area of about 19,500 square miles and extends from Chattanooga, Tennessee, to Paducah, Kentucky. The study unit had a population of about 1.5 million people in 1995. The study unit was subdivided into subunits with relatively homogeneous geology and physiography. Subdivision of the study unit creates a framework to assess the effects of natural and cultural settings on water quality. Nine subunits were delineated in the study unit; their boundaries generally coincide with level III and level IV ecoregion boundaries. The nine subunits are the Coastal Plain, Transition, Western Highland Rim, Outer Nashville Basin, Inner Nashville Basin, Eastern Highland Rim, Plateau Escarpment and Valleys, Cumberland Plateau, and Valley and Ridge.The lower Tennessee River Basin consists of predominantly forest (51 percent) and agricultural land (40 percent). Activities related to agricultural land use, therefore, are the primary cultural factors likely to have a widespread effect on surface- and ground-water quality in the study unit. Inputs of total nitrogen and phosphorus from agricultural activities in 1992 were about 161,000 and 37,900 tons, respectively. About 3.7 million pounds (active ingredient) of pesticides was applied to crops in the lower Tennessee River Basin in 1992. State water-quality agencies identified nutrient enrichment and pathogens as water-quality issues affecting both surface and ground water in the lower Tennessee River Basin. Water-quality data collected by State and Federal agencies between 1980 and 1996 were summarized to characterize surface- and ground-water quality of the subunits with respect to these issues. Median concentrations of nitrogen species generally were less than 1 milligram per liter in surface and ground water in all subunits, and were highest throughout the subunits that had the largest percentages of agricultural land use. Median phosphorus concentrations also were less than 1 milligram per liter in all subunits. Phosphatic limestones present in two subunits had a larger effect on phosphorus concentrations in surface and ground water than did the amount of agricultural land use in these subunits. Median counts of fecal coliform were higher in surface water than in ground water in all subunits. The highest median counts in surface water were in the Valley and Ridge (7,500 colonies per 100 milliliters) and the Outer Nashville Basin subunits (5,000 colonies per 100 milliliters). Highest median counts in ground water were in the Inner and Outer Nashville Basin subunit. Natural setting likely has an important effect with respect to fecal contamination of surface and ground water in the lower Tennessee River Basin.

Alabama, Georgia, Kentucky, Mississippi, Tennessee↗
USGS1999

Quantity and quality of seepage from two earthen basins used to store livestock waste in southern Minnesota during the first year of operation, 1997-98

Numerous earthen basins have been constructed in Minnesota for storage of livestock waste. Typically, these basins are excavated pits with partially above-grade, earth-walled embankments and compacted clay liners. Some have drain tile installed around them to prevent shallow ground and soil water to discharge into the basins. Environmental concerns associated with the waste include contamination of ground water by nitrogen compounds and pathogens. The U.S. Geological Survey, in cooperation with the MFC A (Minnesota Pollution Control Agency), studied the quantity and quality of seepage from two earthen basins used to store livestock waste in southern Minnesota during the first year of operation. One basin (site A), located at a small dairy farm, holds a manuresilage mixture, milkhouse wastewater, and local runoff; the other basin (site B), located at a large hog farm, holds a manure-water mixture from a nearby gestation barn. Monitoring systems were installed below compacted clay liners in portions of the sidewalls and bottoms of the basins to determine the quantity and quality of the seepage. Total seepage flow from the site A basin ranged from about 900 to 2,400 gal/d (gallons per day) except during April 1998 when the flow increased to about 4,200 gal/d. Seepage flow in areal units, which closely correlated with flow in gal/d, generally ranged from about 0.07 to 0.18 in./d (inches per day), which exceeded the recommended maximum design rate of 0.018 in./d established by the MPCA. Seepage flow commonly was greater through the sidewalls than through the bottom. Seepage from the site A basin (based on 11 samples each from the bottom and sidewall) had chloride concentrations of 220-350 mg/L (milligrams per liter); ammonium-N (nitrogen) concentrations of 2.40 mg/L or less (except for one concentration of 18.4 mg/L); nitrate-N concentrations of 5.24 mg/L or less; and organic-N concentrations of 6.97 mg/L or less. Ground water would be enriched in chloride and diluted in inorganic-N from mixing with basin seepage. Fecal Coliform bacteria, although abundant in the basin wastewater, were present in very small amounts in the seepage. Total seepage flow from the site B basin generally ranged from 400 to 2,200 gal/d except during 1-month and 3-month periods when the flow ranged from about 3,800 to 6,200 gal/d. Seepage flow in areal units generally ranged from about 0.025 to 0.15 in./d, and, as at the site A basin, exceeded the MPCA recommended maximum design rate of 0.018 in./d. Seepage flow in areal units generally correlated with the flow in gal/d except through the sidewalls when the basin was unfilled. Except during the first three months of the study, seepage flow was greater through the sidewalls than through the bottom. Seepage from the site B basin (based on 10 samples each from the bottom and sidewall) had chloride concentrations of 11 to 100 mg/L; ammonium-N concentrations of 2.58 mg/L or less; nitrate-N concentrations of 25.7 mg/L or less (except for one concentration of 146 mg/L); and organic-N concentrations of 0.92 mg/L or less. Nitrate-N concentrations in the seepage exceeded the U.S. Environmental Protection Agency (1996). MCL (maximum contaminant level) of 10 mg/L in 17 of 22 samples. Background ground-water quality, however, indicated that nitrate-N concentrations were greater than the MCL prior to operation of the basin. Fecal Coliform bacteria, as at the site A basin, were abundant in the basin wastewater, but not in the seepage.

Minnesota↗
USGS2019

The status of mussel health assessment and a path forward

Declines of freshwater mussel (order Unionida) populations worldwide are attributed to habitat degradation, pollution, and invasive species, among other factors. However, these purported causes do not fully explain the enigmatic decline and large-scale die-offs of mussels that have occurred in assumedly “healthy” streams across a wide geographic region. The roles of the microbiota and pathogens in mussel health has been understudied, and, as a result, few references exist to compare the microbiota of healthy mussels to that of stressed or dying mussels. Captive propagation and stocking programs have expanded across the globe without standard diagnostic protocols to assess health or potential diseases in hatchery-reared or wild stocks. Introduction of nonindigenous species, contaminants of emerging concern and anthropogenic climate change could adversely alter underlying variables that support mussel health such as nutrient and microbial composition, in addition to increased risk for outbreaks of opportunistic disease and emergent diseases in freshwater mussel populations. We suggest a coordinated, collaborative, and multidisciplinary effort to advance methods for assessing freshwater mussel health. We identify research and resources needed to answer central questions surrounding mussel health including identifying potential agents of disease, defining clinical signs of declining condition, refining stress-specific biomarkers for health assessment, and developing protocols specific for mussels.

Freshwater Mollusk Biology and Conservation↗