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At least 1,369 records · Page 76Linked to original sources
USGS2004

Acetamide herbicides and their degradation products in ground water and surface water of the United States, 1993-2003

During 1993 through 2003, the U.S. Geological Survey conducted a number of studies to investigate and document the occurrence, fate, and transport of acetamide herbicides and their degradation products in ground and surface water. As part of these studies, approximately 5,100 water samples were collected and analyzed for the acetamide parent herbicides acetochlor, alachlor, dimethenamid, flufenacet, and metolachlor and their degradation products ethanesulfonic acid, oxanilic acid, and sulfinyl acetic acid. During this period, various analytical methods were developed to detect and measure concentrations of acetamide herbicides and their degradation products in ground water and surface water. Results showed that the degradation products of acetamide herbicides in ground water were detected more frequently and occurred at higher concentrations than their parent compounds. Further study showed that the acetamide herbicides and their degradation products were detected more frequently in surface water than in ground water. In general, the parent compounds were detected at similar or greater frequencies than the degradation products in surface water. The developed methods and data were valuable for acquiring information about the occurrence, fate, and transport of the herbicides and their degradation products and the importance of analyzing for both parent compounds and their degradate products in water-quality studies.

Data Series↗
USGS2011

Changes in water levels and storage in the High Plains Aquifer, predevelopment to 2009

The High Plains aquifer underlies 111.8 million acres (175,000 square miles) in parts of eight States - Colorado, Kansas, Nebraska, New Mexico, Oklahoma, South Dakota, Texas, and Wyoming. The area overlying the High Plains aquifer is one of the primary agricultural regions in the Nation. Water-level declines began in parts of the High Plains aquifer soon after the onset of substantial irrigation with groundwater from the aquifer (about 1950 and termed "predevelopment" in this fact sheet). By 1980, water levels in the High Plains aquifer in parts of Texas, Oklahoma, and southwestern Kansas had declined more than 100 feet (ft) (Luckey and others, 1981). In 1987, in response to declining water levels, Congress directed the U.S. Geological Survey (USGS), in collaboration with numerous Federal, State, and local water-resources entities, to assess and track water-level changes in the aquifer. This fact sheet summarizes changes in water levels and drainable water in storage in the High Plains aquifer from predevelopment to 2009. Drainable water in storage is the fraction of water in the aquifer that will drain by gravity and can be withdrawn by wells. The remaining water in the aquifer is held to the aquifer material by capillary forces and generally cannot be withdrawn by wells. Drainable water in storage is termed "water in storage" in this report. A companion USGS report presents more detailed and technical information about water-level and storage changes in the High Plains aquifer during this period (McGuire, 2011).

Colorado;Kansas;Nebraska;New Mexico;Oklahoma;South↗
USGS2002

Method of analysis and quality-assurance practices by the U.S. Geological Survey Organic Geochemistry Research Group: Determination of geosmin and methylisoborneol in water using solid-phase microextraction and gas chromatography/mass spectrometry

A method for the determination of two common odor-causing compounds in water, geosmin and 2-methylisoborneol, was modified and verified by the U.S. Geological Survey's Organic Geochemistry Research Group in Lawrence, Kansas. The optimized method involves the extraction of odor-causing compounds from filtered water samples using a divinylbenzene-carboxen-polydimethylsiloxane cross-link coated solid-phase microextraction (SPME) fiber. Detection of the compounds is accomplished using capillary-column gas chromatography/mass spectrometry (GC/MS). Precision and accuracy were demonstrated using reagent-water, surface-water, and ground-water samples. The mean accuracies as percentages of the true compound concentrations from water samples spiked at 10 and 35 nanograms per liter ranged from 60 to 123 percent for geosmin and from 90 to 96 percent for 2-methylisoborneol. Method detection limits were 1.9 nanograms per liter for geosmin and 2.0 nanograms per liter for 2-methylisoborneol in 45-milliliter samples. Typically, concentrations of 30 and 10 nanograms per liter of geosmin and 2-methylisoborneol, respectively, can be detected by the general public. The calibration range for the method is equivalent to concentrations from 5 to 100 nanograms per liter without dilution. The method is valuable for acquiring information about the production and fate of these odor-causing compounds in water.

Open-File Report↗
USGS2006

High severity fire in forests of the southwest: Conservation implications. Progress Report August 2005

The occurrence of large, severe fires in southwestern ponderosa pine (Pinus ponderosa) forests has resulted in concern that these forests may not persist under such an extreme disturbance regime. In our research, we are examining the outcomes of high-severity fire in ponderosa pine forests and their neighboring communities across an elevational gradient. One goal of our work is to contribute to understanding the resiliency of these systems, but we also want to investigate the conservation values intrinsic to the diverse communities that represent alternative successional trajectories after severe fire. One assumption of our research is that the spatial pattern of a disturbance becomes increasingly important when the disturbance is large and biological legacies are few and sparse. We ask, therefore, what spectrum of plant communities results from high severity fire, and what is their relationship to spatial patterns of severity mapped in early post fire timeframes? Also, do spatial patterns of older burns (1950–80) differ from recent burns (1998–present) in ways that make us expect successional changes years from now to differ from those we observed at our older burn field sites? Here, we describe the first stages of our work in mapping burn severity at old and new burns as well as the work we have recently completed at our two field sites. The report is organized under our two main objectives with the purpose of summarizing the steps we have taken in working toward these objectives, as well as changes we have made in methodologies since the original study plan. We present some general observations and plans for the next steps in data analysis and product generation. This report, the study plan, a photograph gallery, slide presentations, and our contact information are available on the project Web site http://www.umass.edu/landeco/research/swfire/swfire.html .

Open-File Report↗
USGS2006

Development and application of a screening model for simulating regional ground-water flow in the St. Croix River basin, Minnesota and Wisconsin

A series of databases and an accompanying screening model were constructed by the U.S. Geological Survey, in cooperation with the National Park Service, to better understand the regional ground-water-flow system and its relation to stream drainage in the St. Croix River Basin. The St. Croix River and its tributaries drain about 8,000 square miles in northeastern Minnesota and northwestern Wisconsin. The databases contain information for the entire St. Croix River Basin pertaining to well logs, lithology, thickness of lithologic groups, ground-water levels, streamflow, and well pumpage. Maps and generalized cross sections created from the compiled data show the lithologic groups, extending from the water table to the crystalline bedrock, through which ground water flows. These lithologic groups are: fine-grained unconsolidated deposits; coarse-grained unconsolidated deposits; sandstone bedrock; carbonate bedrock; and other bedrock lithologies including shale, siltstone, conglomerate, and igneous intrusions. The steady-state screening model treats the ground-water-flow system as a single layer with transmissivity zones that reflect the distribution of lithologic groups, and with recharge zones that correspond to general areas of high or low evapotranspiration. The model includes representation of second- and higher-order streams and municipal and other high-capacity production wells. The analytic-element model code GFLOW was used to simulate the regional ground-water flow, the water-table surface across the St. Croix River Basin, and base-flow contributions from ground water to streams. In addition, the model routes tributary base flow through the stream network to the St. Croix River. The parameter-estimation inverse model UCODE was linked to the GFLOW model to select the combination of parameter values best able to match over 5,000 water-level measurements and base-flow estimates at 22 streamflow-gaging stations. Results from the calibrated screening model show ground-water contributing areas for selected stream reaches within the basin. The delineation of these areas is useful to water-resource managers concerned with protection of fisheries and other resources. The model results also identify the areas of the basin where ground-water travel time from the water table to streams and wells is relatively short (less than 50 years). Ninety percent of the simulated ground-water pathlines require travel times between 3 and 260 years. The median pathline distance traversed and the median pathline velocity were 1.7 mi and 177 ft/y, respectively. It is important to recognize the limitations of this screening model. Heterogeneities in subsurface properties and in recharge rates are considered only at a very broad scale (miles to tens of miles). No account is taken of vertical variations in properties or pumping rates, and no provision is made to account for stacked ground-water-flow systems that have different flow patterns at different depths. Small-scale (hundreds to thousands of feet) flow systems associated with minor water bodies are neglected, and as a result, the model is not useful for simulating typical site-specific problems. Despite its limitations, the model serves as a framework for understanding the regional pattern of ground-water flow and as a starting point for a generation of more targeted and detailed ground-water models that would be needed to address emerging water-supply and water-quality concerns in the St. Croix River Basin.

Scientific Investigations Report↗
USGS2011

Developmental rate and behavior of early life stages of bighead carp and silver carp

The early life stages of Asian carp are well described by Yi and others (1988), but since these descriptions are represented by line drawings based only on live individuals and lacked temperature controls, further information on developmental time and stages is of use to expand understanding of early life stages of these species. Bighead carp and silver carp were cultured under two different temperature treatments to the one-chamber gas bladder stage, and a photographic guide is provided for bighead carp and silver carp embryonic and larval development, including notes about egg morphology and larval swimming behavior. Preliminary information on developmental time and hourly thermal units for each stage is also provided. Both carp species developed faster under warmer conditions. Developmental stages and behaviors are generally consistent with earlier works with the exception that strong vertical swimming immediately after hatching was documented in this report.

Scientific Investigations Report↗
USGS2017

Hydrogeologic framework and hydrologic conditions of the Piney Point aquifer in Virginia

The Piney Point aquifer in Virginia is newly described and delineated as being composed of six geologic units, in a study conducted by the U.S. Geological Survey in cooperation with the Virginia Department of Environmental Quality (VA DEQ). The eastward-dipping geologic units include, in stratigraphically ascending order, the sand of the Nanjemoy Formation Woodstock Member, interbedded limestone and sand of the Piney Point Formation, silty and clayey sand of the Gosport Formation equivalent sediments, silty sand of the Oligocene-age sediments, silty fine-grained sand of the Old Church Formation, and silty sand of the Calvert Formation, Newport News unit and basal Plum Point Member. Identification of geologic units is based on typical sediment lithologies of geologic formations. Fine-grained sediments that compose confining units positioned immediately above and below the Piney Point aquifer are also described. The Piney Point aquifer is one of several confined aquifers within the Virginia Coastal Plain and includes a highly porous and solution-channeled indurated limestone within the Piney Point Formation from which withdrawals are made. The limestone is relatively continuous laterally across central parts of the Northern Neck, Middle Peninsula, and York-James Peninsula. Other geologic units are of variable extent. The configurations of most of the geologic units are further affected by newly identified faults that are aligned radially from the Chesapeake Bay impact crater and create constrictions or barriers to groundwater flow. Some geologic units are also truncated beneath the lower Rappahannock River by a resurge channel associated with the impact crater. Groundwater withdrawals from the Piney Point aquifer increased from approximately 1 million gallons per day (Mgal/d) during 1900 to 7.35 Mgal/d during 2004. As a result, a water-level cone of depression in James City and northern York Counties was estimated to be as low as 70 feet (ft) below the National Geodetic Vertical Datum of 1929 (NGVD 29) by 2005. Withdrawals decreased to 5.01 Mgal/d by 2009 as withdrawals were shifted toward other sources, and by 2015 water levels had recovered to approximately 50 ft below NGVD 29. The mean estimated transmissivity of the Piney Point aquifer in York and James City Counties is 16,300 feet squared per day (ft 2 /d), but farther north it is only 925 ft 2 /d. The mean well specific capacity in York and James City Counties is 11.4 gallons per minute per foot (gal/min/ft). Farther north in Virginia, mean specific capacity is only 2.26 gal/min/ft, and in Maryland it is 0.99 gal/min/ft. The northward decrease in specific capacity probably reflects the northward decrease in transmissivity, which results from poor development of the solution-channeled limestone. An aquifer test in northern York County induced vertical leakage to the solution-channeled limestone from overlying silty sand and a change in response of the aquifer to pumping from a single layer to two layers. Transmissivity of the limestone of approximately 19,800 ft 2 /d was distinguished from the silty sand of approximately 2,500 ft 2 /d. Most of the water in the Piney Point aquifer is slightly alkaline with moderate concentrations primarily of sodium and bicarbonate that are slightly undersaturated with respect to calcite. Iron concentrations are generally less than 0.3 milligrams per liter (mg/L). Mixing of freshwater with seawater has elevated chloride concentrations to the southeast to as much as 7,120 mg/L. Information on the Piney Point aquifer can benefit water-resource management in siting production wells, predicting likely well yield, and anticipating water-level response to withdrawals. Models that vertically discretize individual geologic units can potentially be used to evaluate groundwater flow in greater detail by representing lateral flow and vertical leakage among the geologic units. Because groundwater withdrawals are made primarily from the limestone and sand of the Piney Point Formation, the VA DEQ has considered regarding the limestone and sand singly as a regulated aquifer apart from the other geologic units. Under current policy in Virginia, if only the limestone and sand were regarded as a regulated aquifer, a greater amount of drawdown would be allowed than is allowed for the Piney Point aquifer consisting of six geologic units. Some production wells intercept multiple geologic units, and the units can undergo water-level decline and vertical leakage induced by pumping from the limestone and sand. Whether the other geologic units are to be regarded as regulated aquifers is an additional consideration for the VA DEQ.

Virginia↗
USGS2012

Endangered river fish: factors hindering conservation and restoration

Globally, riverine fish face many anthropogenic threats including riparian and flood plain habitat degradation, altered hydrology, migration barriers, fisheries exploitation, environmental (climate) change, and introduction of invasive species. Collectively, these threats have made riverine fishes some of the most threatened taxa on the planet. Although much effort has been devoted to identifying the threats faced by river fish, there has been less effort devoted to identifying the factors that may hinder our ability to conserve and restore river fish populations and their watersheds. Therefore, we focus our efforts on identifying and discussing 10 general factors (can also be viewed as research and implementation needs) that constrain or hinder effective conservation action for endangered river fish: (1) limited basic natural history information; (2) limited appreciation for the scale/extent of migrations and the level of connectivity needed to sustain populations; (3) limited understanding of fish/river-flow relationships; (4) limited understanding of the seasonal aspects of river fish biology, particularly during winter and/or wet seasons; (5) challenges in predicting the response of river fish and river ecosystems to both environmental change and various restoration or management actions; (6) limited understanding of the ecosystem services provided by river fish; (7) the inherent difficulty in studying river fish; (8) limited understanding of the human dimension of river fish conservation and management; (9) limitations of single species approaches that often fail to address the broader-scale problems; and (10) limited effectiveness of governance structures that address endangered river fish populations and rivers that cross multiple jurisdictions. We suggest that these issues may need to be addressed to help protect, restore, or conserve river fish globally, particularly those that are endangered.

Endangered Species Research↗
USGS2022

Modflow-setup: Robust automation of groundwater model construction

In an age of both big data and increasing strain on water resources, sound management decisions often rely on numerical models. Numerical models provide a physics-based framework for assimilating and making sense of information that by itself only provides a limited description of the hydrologic system. Often, numerical models are the best option for quantifying even intuitively obvious connections between human activities and water resource impacts. However, despite many recent advances in model data assimilation and uncertainty quantification, the process of constructing numerical models remains laborious, expensive, and opaque, often precluding their use in decision making. Modflow-setup aims to provide rapid and consistent construction of MODFLOW groundwater models through robust and repeatable automation. Common model construction tasks are distilled in an open-source, online code base that is tested and extensible through collaborative version control. Input to Modflow-setup consists of a single configuration file that summarizes the workflow for building a model, including source data, construction options, and output packages. Source data providing model structure and parameter information including shapefiles, rasters, NetCDF files, tables, and other (geolocated) sources to MODFLOW models are read in and mapped to the model discretization, using Flopy and other general open-source scientific Python libraries. In a few minutes, an external array-based MODFLOW model amenable to parameter estimation and uncertainty quantification is produced. This paper describes the core functionality of Modflow-setup, including a worked example of a MODFLOW 6 model for evaluating pumping impacts to a lake in central Wisconsin, United States.

Wisconsin↗
USGS2019

Aquatic vegetation and invertebrate communities of Big Stone National Wildlife Refuge

Observed degradation of aquatic systems at Big Stone National Wildlife Refuge, located in west-central Minnesota, have been associated with sediment-laden inflows from riverine systems. To support management, a study was conducted during 2013–2014 with overall goals of characterizing the aquatic invertebrate and vegetation communities of the Big Stone National Wildlife Refuge and exploring relations between these communities and various water-quality parameters. Sample sites were located along an observed vegetation gradient and assigned to three predetermined habitat zones for comparison purposes: upstream, transition, and downstream. Of the 12 species of aquatic vegetation that were identified, invasive narrowleaf cattail Typha angustifolia dominated the upstream zone (observed at .90% of sample locations), coontail Ceratophyllum demersum and narrowleaf cattail were most common in the transition zone (collected or observed at 100 and 83% of sample locations, respectively), and coontail and narrowleaf pondweed Potamogeton strictifolius were most common in the downstream zone collected at 100 and 64% of sample locations, respectively). Measured values for the water-quality parameters varied among dates, reflecting the continually fluctuating nature of riverine systems. Based on general observations across sample dates, turbidity and dissolved oxygen concentrations were greatest in the upstream zone sample sites, while oxidation-reduction potential was greatest in the downstream zone sites. There were 115 unique aquatic invertebrate taxa identified to varying levels of taxonomic resolution. Results suggested that there were overall differences in invertebrate biomass among the sample dates, but that there were no strong trends among the sample zones. Aquatic invertebrates and vegetation communities, along with the water-quality parameters, varied temporally and showed irregular relations among the sample zones. These general observations emphasize the importance of temporally and spatially intensive sampling to account for natural variation. Moreover, short- and long-term streamflow and water-level information obtained for this study demonstrated substantial variability that must be considered when conducting biotic inventories and monitoring water quality, as well as when using such data to assess management options. Periodic monitoring of wetlands and associated streamflows, along with sediment loads and water quality of inflows, should allow Big Stone National Wildlife Refuge staff to identify habitat degradation and potential contributing factors, and to develop strategies to achieve specific management objectives and goals.

Minnesota↗
USGS1991

Compendium of crane behavior. Part 1: Individual (nonsocial) behavior

This paper provides the organizational framework, nomenclature, and abbreviated descriptions for all conspicuous nonsocial behavioral units for all 15 species of crane. We present eight generalized functional classes of behavior. These classes include about 90 discrete motor patterns that constitute the nonsocial repertoire of all cranes. We present this compendium to facilitate information exchanges among students of crane behavior and to encourage interest in future detailed studies of the descriptive ethology of each species.

Book chapter↗
USGS2007

Structure and composition of a watershed-scale sediment information network

A 'Watershed-Scale Sediment Information Network' (WaSSIN), designed to complement UNESCO's International Sedimentation Initiative, was endorsed as an initial project by the World Association for Sedimentation and Erosion Research. WaSSIN is to address global fluvial-sediment information needs through a network approach based on consistent protocols for the collection, analysis, and storage of fluvial-sediment and ancillary information at smaller spatial scales than those of the International Sedimentation Initiative. As a second step of implementation, it is proposed herein that the WaSSIN have a general structure of two components, (1) monitoring and data acquisition and (2) research. Monitoring is to be conducted in small watersheds, each of which has an established database for discharge of water and suspended sediment and possibly for bed load, bed material, and bed topography. Ideally, documented protocols have been used for collecting, analyzing, storing, and sharing the derivative data. The research component is to continue the collection and interpretation of data, to compare those data among candidate watersheds, and to determine gradients of fluxes and processes among the selected watersheds. To define gradients and evaluate processes, the initial watersheds will have several common attributes. Watersheds of the first group will be: (1) six to ten in number, (2) less than 1000 km2 in area, (3) generally in mid-latitudes of continents, and (4) of semiarid climate. Potential candidate watersheds presently include the Weany Creek Basin, northeastern Australia, the Zhi Fanggou catchment, northern China, the Eshtemoa Watershed, southern Israel, the Metsemotlhaba River Basin, Botswana, the Aiuaba Experimental Basin, Brazil, and the Walnut Gulch Experimental Watershed, southwestern United States.

International Journal of Sediment Research↗
USGS1974

A progress report on results of test drilling and ground-water investigations of the Snake Plain aquifer, southeastern Idaho: Part 3: Lake Walcott-Bonanza Lake area

Direct-current resistivity soundings and exploratory drilling suggest that the basalt of the Snake River Group is relatively thin in the area along the Snake River that is topographically suitable for pumping large quantities of ground water in exchange for surface water. The formations underlying the Snake River Group appear to have low permeability and probably would not yield large amounts of water. Previous studies have indicated that the southern edge of the Snake Plain aquifer extended to the Snake River. Data presented in this report implies that, in general, the southern boundary should, in fact, be several miles north of the river.

Idaho↗
USGS2013

User's guide and metadata for WestuRe: U.S. Pacific Coast estuary/watershed data and R tools

Overview There are about 350 estuaries along the U.S. Pacific Coast (U.S. Fish andWildlife 2011). Basic descriptive data for these estuaries, such as their size and watershed area, are important for coastal-scale research and conservation planning. However, this information is spread among many sources, making it difficult to find and standardize. The goal of the WestuRe Project is to provide a framework to: (1) make general descriptive data for estuaries and their watersheds more accessible, and (2) provide tools to make analyzing and visualizing these data easier. The WestuRe download includes data describing U.S. Pacific Coast estuaries and their corresponding watersheds from northern Washington (including the region located along the Strait of Juan de Fuca that goes from Port Townsend to Cape Flattery, 48.383°N) to southern California (Tijuana Estuary, 32.557°N), excluding Puget Sound proper and coastal islands (Fig. 1). The WestuRe data currently include shapefiles of estuary and watershed polygons as well as CSV files summarizing geomorphological and climate data (Fig. 2, Section 2). The WestuRe tools help users extract and view relevant data using the statistical program R and Google Earth (Fig. 3, Section 3). Potential applications of the data include: Describing and comparing estuaries and watersheds at the landscape scale Identifying relationships between estuary/watershed variables Incorporating estuary/watershed attributes in models to predict species and habitat distributions Classifying estuaries according to morphology, climate, and habitat (Lee and Brown 2009)

California, Oregon, Washington↗
USGS2019

Encylopedia of Caves

For many people, a visit to a cave is a wondrous event directing our minds to ponder the mysteries presented by these unique places and inspiring questions: How old is the cave? What was the role of water in forming the cave and where did the water come from? How is the cave connected to the surface environment? These are intriguing questions to ask, and karst scientists use isotope geochemistry to help solve these mysteries. Isotopes are atoms of the same chemical element that have the same number of protons but vary in their number of neutrons. As a result of their atomic mass difference, isotopes of a single element may exhibit slightly different chemical behavior. Radioisotopes are unstable and the nucleus of a parent isotope will spontaneously break apart (decay), releasing energy and changing into another element (daughter product) by loss or gain of protons, neutrons, or electrons. Stable isotopes, as implied by the name, are stable and do not spontaneously decay. These two types of isotopes are used widely by scientists to understand ancient and modern karst systems. Generally, radioisotopes are used for absolute dating karst water, cave sediments, cave formations (speleothems), and other material preserved in caves (such as bones). Stable isotopes can provide information about relative ages of cave water and speleothems. An absolute age provides a numeric date—such as 100,000 years old—whereas a relative age provides information that something is older or younger than something else—such as cave art is younger than a speleothem found in the same cave. Stable isotopes are used to study ancient karst systems because isotopic signals of past climate (paleoclimate) and environmental conditions (paleoenvironment) are preserved in speleothems and sediments. Stable isotopes are also used to understand modern systems, primarily through studies that distinguish sources of karst water, cave air, or contaminants, mixing of those sources, and biologic or chemical reactions that process compounds, such as breakdown of contaminants or organic matter. The variation in mass among isotopes is small, and isotope abundances are measured as a ratio of a common isotope to its less common isotopic counterparts (stable isotopes) or the abundance of a parent compared to daughter isotope (radioisotopes). As an example, hydrogen (H) has three naturally occurring isotopes. Most H comprises one proton (1H), but the rarer stable isotope (called deuterium) comprises one proton and one neutron (2H), and the radioisotope (called tritium) comprises one proton and two neutrons (3H). Because scientists use the minute differences in isotopes to test hypotheses, a scientist must understand the accuracy, precision, and error of the available methods, the assumptions about the chemical conditions of interest, and the limitations of the isotopic method being used. Many isotopic studies employ multiple isotopic tracers to better leverage the strengths and offset the limitations of using a single isotope. This article focuses on isotopes used to study the geology and hydrology of caves, but much additional isotopic work has been used to characterize the biology of caves.

Book chapter↗
USGS1983

Land use and land cover digital data

The discipline of cartography is undergoing a number of profound changesthat center on the emerging influence ofdigital manipulation and analysis ofdata for the preparation of cartographic materials and for use in geographic information systems. Operational requirements have led to the development by the USGS National Mapping Division of several documents that establish in-house digital cartographic standards. In an effort to fulfill lead agency requirements for promulgation of Federal standards in the earth sciences, the documents have been edited and assembled with explanatory text into a USGS Circular. This Circular describes some of the pertinent issues relative to digital cartographic data standards, documents the digital cartographic data standards currently in use within the USGS, and details the efforts of the USGS related to the definition of national digital cartographic data standards. It consists of several chapters; the first is a general overview, and each succeeding chapter is made up from documents that establish in-house standards for one of the various types of digital cartographic data currently produced. This chapter 895-E, describes the Geographic Information Retrieval and Analysis System that is used in conjunction with the USGS land use and land cover classification system to encode, edit, manipuate, and analyze land use and land cover digital data.

Open-File Report↗
USGS2011

Effects of acid deposition on ecosystems: Advances in the state of the science

Chapter 2 focused on the environmental results of the ARP, presenting data from national monitoring networks on SO2 and NOx emissions, air quality, atmospheric deposition, surface water chemistry, and visibility. This chapter expands on this information by examining the most recent research into how ecosystems respond to acid deposition, especially the processes that control the recovery of ecosystems as acid deposition decreases. In Chapter 2, two general trends were discussed regarding the current recovery status of affected ecosystems: (1) these ecosystems are trending generally towards recovery, but improvements in ecosystem condition shown by surface water chemistry monitoring data thus far have been less than the improvements in deposition; and (2) ecosystem impacts and trends vary widely by geographic region, but the evidence of improvement is strongest and most evident in the Northeast. These trends are not uniform across the United States, however, and in some regions (e.g., central Appalachian Mountain region), trends in improved water quality are generally not evident. Despite the strong link in many areas between reduced emissions and reduced acidity of atmospheric deposition, the link is less clear between reduced acidity and recovery of the biological communities that live in aquatic and terrestrial ecosystems that have experienced deleterious effects from acid deposition. The recovery of these communities is proceeding at a slower pace than, for example, the improvements in stream and lake ANC would indicate. The goal of this chapter is to synthesize the science in a weightof-evidence manner to provide policy makers with tangible evidence and likely causative factors regarding ecosystem status and recovery patterns to date. This chapter serves as an update to the 2005 NAPAP RTC (NSTC, 2005), with an emphasis on scientific studies and monitoring since 2003, which was the last year for consideration of research results in the 2005 report. Several issues pertinent to ecosystem response to emission controls and acid deposition are receiving increasing attention in the scientific literature and will be discussed in this chapter, including the (1) observed delay in ecosystem recovery in the eastern United States, even with decreases in emissions and deposition over the past 30 years; (2) emerging ecosystem impacts of nitrogen deposition in the western United States; (3) the application of critical deposition loads as a tool for scientists to better inform air quality policies; (4) the role of changes in climate and the carbon cycle as factors that affect the response of ecosystems to acid deposition; and (5) the interaction of multiple pollutants in ecosystems. Throughout this chapter, the value of long-term environmental monitoring data in informing air quality policy will be highlighted, including the limitations of assessing the current status of some ecosystem indicators for which continuous, long-term data are lacking.

Report↗
USGS2006

Genetic analyses of captive Alala (Corvus hawaiiensis) using AFLP analyses

Population level studies of genetic diversity can provide information about population structure, individual genetic distinctiveness and former population size. They are especially important for rare and threatened species like the Alala, where they can be used to assess extinction risks and evolutionary potential. In an ideal situation multiple methods should be used to detect variation, and these methods should be comparable across studies. In this report, we discuss AFLP (Amplified Fragment Length Polymorphism) as a genetic approach for detecting variation in the Alala , describe our findings, and discuss these in relation to mtDNA and microsatellite data reported elsewhere in this same population. AFLP is a technique for DNA fingerprinting that has wide applications. Because little or no prior knowledge of the particular species is required to carry out this method of analysis, AFLP can be used universally across varied taxonomic groups. Within individuals, estimates of diversity or heterozygosity across genomes may be complex because levels of diversity differ between and among genes. One of the more traditional methods of estimating diversity employs the use of codominant markers such as microsatellites. Codominant markers detect each allele at a locus independently. Hence, one can readily distinguish heterozygotes from homozygotes, directly assess allele frequencies and calculate other population level statistics. Dominant markers (for example, AFLP) are scored as either present or absent (null) so heterozygotes cannot be directly distinguished from homozygotes. However, the presence or absence data can be converted to expected heterozygosity estimates which are comparable to those determined by codominant markers. High allelic diversity and heterozygosity inherent in microsatellites make them excellent tools for studies of wild populations and they have been used extensively. One limitation to the use of microsatellites is that heterozygosity estimates are affected by the mutation rate at microsatellite loci, thus introducing a bias. Also, the number of loci that can be studied is frequently limited to fewer than 10. This theoretically represents a maximum of one marker for each of 10 chromosomes. Dominant markers like AFLP allow a larger fraction of the genome to be screened. Large numbers of loci can be screened by AFLP to resolve very small individual differences that can be used for identification of individuals, estimates of pairwise relatedness and, in some cases, for parentage analyses. Since AFLP is a dominant marker (can not distinguish between +/+ homozygote versus +/- heterozygote), it has limitations for parentage analyses. Only when both parents are homozygous for the absence of alleles (-/-) and offspring show a presence (+/+ or +/-) can the parents be excluded. In this case, microsatellites become preferable as they have the potential to exclude individual parents when the other parent is unknown. Another limitation of AFLP is that the loci are generally less polymorphic (only two alleles/locus) than microsatellite loci (often >10 alleles/locus). While generally fewer than 10 highly polymorphic microsatellite loci are enough to exclude and assign parentage, it might require up to 100 or more AFLP loci. While there are pros and cons to different methodologies, the total number of loci evaluated by AFLP generally offsets the limitations imposed due to the dominant nature of this approach and end results between methods are generally comparable. Overall objectives of this study were to evaluate the level of genetic diversity in the captive population of Alala, to compare genetic data with currently available pedigree information, and to determine the extent of relatedness of mating pairs and among founding individuals.

Open-File Report↗