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USGS2025

Proceedings of the 2024 Asia-Pacific Wildlife Health Workshop—Collaborating against shared threats

Emerging diseases of wildlife origin are increasingly transboundary (they spread rapidly across geographic regions and across continents). In recent years, examples include the rapid spread of African swine fever across Europe and Asia with negative effects on food security, and the near global spread of highly pathogenic avian influenza which has devastated wildlife populations, caused economic harm, and which threatens public health; consequently, international partnerships and networks are essential to facilitate the sharing of information for improved situational awareness and better preparedness and response. In this regard, the U.S. Geological Survey and the Korea National Institute for Wildlife Disease Control and Prevention have had a long-standing partnership to foster scientific collaboration. A key part of the activities has been annual scientific workshops, which commenced in 2016. The 2024 workshop in Hilo, Hawaii, was the most recent in these series of workshops and included participants from across Asia and the Pacific region, including Thailand, Vietnam, China, Republic of Korea, Japan, Australia, Cook Islands, Fiji, and the United States. The goals of the workshop were: to continue to build the wildlife health community of practice in the Asia-Pacific region and expand the participants to agencies and institutions from other countries in the region; and exchange scientific knowledge among the participants to share best practices, create scientific networks, and build capacity in wildlife health science for the Asia-Pacific region. The themes discussed at the workshop included wildlife health risk management, avian Influenza, African swine fever, climate change and emerging diseases, and international cooperation. This report contains the author-submitted abstracts which provide a summary of the presentations and discussions during the workshop. The aim is to share this information to continue to foster international scientific exchange to protect wildlife health, livestock, and public health from the negative impacts of infectious and noninfectious diseases.

Open-File Report↗

USGS2025

Reconnaissance of potential alternate water supply sources for the City of Gary, West Virginia

Seven potential sources of water, consisting of free-flowing discharge from abandoned coal mines at six locations and one abandoned flooded underground coal mine air shaft, were sampled for chemical analysis to assess the quality of the groundwater emanating from the seven mine sources. The six free-flowing mine discharge sources were also assessed for discharge by current-meter measurements on two separate occasions. The U.S. Geological Survey assessed these seven sources to provide information to the City of Gary, West Virginia (W. Va.), and the City of Gary’s consulting engineer with groundwater-quality and flow data to allow them to assess the seven sites as potential alternate sources of water for the City of Gary to augment its existing supply. For the six sites where discharge could be measured, discharge ranged from a minimum of 0.082 cubic feet per second (ft 3 /s) to a maximum of 3.685 ft 3 /s. Of the six sites measured, only two, Harmon Branch at Thorpe, W. Va. (USGS site 372201081303501) and the abandoned public-supply water wells near Havaco, W. Va. (USGS site 372358081344601), had discharge in excess of 1.00 ft 3 /s. Discharge from the abandoned public supply wells was 3.685 ft 3 /s on September 20, 2023, and 2.888 ft 3 /s on October 16, 2023, and discharge from Harmon Branch at Thorpe, W. Va., was 1.049 ft 3 /s on September 22, 2023, and 1.038 ft 3 /s on October 17, 2023. Discharge in the abandoned underground mine air shaft (USGS site 372224081340901) could not be assessed, but the air shaft drains an abandoned mine that likely contains water stored in approximately 1.7 square miles (mi 2 ) of abandoned underground coal mines in the Pocahontas No. 3 coal seam, and possibly an additional 0.9 mi 2 of leakage from the overlying Pocahontas No. 4 coal seam. Discharge for the six sites measured for the study was measured during a period between September 20 and October 18, 2023, and corresponded to the 12th to the 15th percentile of flow-duration statistics for the Tug Fork downstream of Elkhorn Creek at Welch, W. Va. streamgage (USGS site 03212750). Water-quality data for the seven sites sampled overall were acceptable with respect to drinking water standards. Of the 203 constituents analyzed, only a few failed to meet applicable U.S. Environmental Protection Agency (EPA) drinking water standards. Iron exceeded the 300 micrograms per liter (μg/L) secondary maximum contaminant level (SMCL) at only 1 of the 7 sites (14.3 percent) sampled. Iron concentrations ranged from a minimum of less than (<) 5.00 μg/L to a maximum of 724 μg/L with a median concentration of 7.62 μg/L. Manganese exceeded the 50.0 μg/L SMCL at 2 of the 7 sites (28.6 percent) sampled. Manganese concentrations ranged from a minimum of 1.93 μg/L to a maximum of 271 μg/L with a median concentration of 4.03 μg/L. No sites sampled exceeded the arsenic maximum contaminant level (MCL) of 10 μg/L. Arsenic concentrations ranged from a minimum of <0.100 μg/L to a maximum of 2.35 μg/L with a median arsenic concentration of 0.200 μg/L. None of the seven sites sampled for selenium for this study exceeded the EPA MCL of 50.0 μg/L. Selenium concentrations ranged from a minimum of <0.050 μg/L to a maximum of 5.26 μg/L with a median concentration of 3.21 μg/L. All seven sites were sampled for volatile organic compounds (VOCs), semivolatile organic compounds (SVOCs), and polychlorinated biphenyls (PCBs), but most had concentrations below the detection limit. Of the 10 PCB compounds analyzed for the seven sites sampled, none contained detectable concentrations of PCBs or Aroclor compounds. Of the 44 SVOCs analyzed at each of the seven sites sampled, only 1 SVOC, acenaphthene, was detected, at a concentration of 0.02 μg/L. Of the 96 VOCs analyzed, from each of the seven sites sampled, only two were found at detectable concentrations. Trichloromethane was detected only at 1 of the 7 (14.3 percent) sites sampled at a concentration of 0.027 μg/L, and benzene was detected at the same site and 3 additional sites (4 of the 7 sites or 57.1 percent of the sites sampled) at concentrations of 0.028, 0.029, 0.021, and 0.035 μg/L, but none exceeded the EPA MCL for benzene of 5.00 μg/L. Total coliform bacteria are ubiquitous in the environment, and their presence only suggests the potential for contamination by near-surface processes. Escherichia coli ( E. coli ) bacteria are derived from either human or animal fecal material and can be an indicator of potential contamination by pathogenic bacteria or viruses. Total coliform bacteria were detected at all 7 sites sampled at concentrations ranging from 17.5 to greater than (>) 2,420 most probable number per 100 mL (MPN/100 mL) of sample, with a median total coliform concentration of 1,553 MPN/100 mL. Escherichia coli bacteria were detected at 4 of the 7 sites sampled at concentrations ranging from <1 to 11.9 MPN/100 mL, with a median E. coli concentration of 5.1 MPN/100 mL.

West Virginia↗

USGS1973

Review of wastewater problems and wastewater-management planning in the San Francisco Bay region, California

The San Francisco Bay region has suffered adverse environmental effects related to the discharge of municipal-, industrial-, and agricultural- wastewater and storm-water runoff. Specific pollutional properties of theses discharges are not well understood in all cases although the toxic materials and aquatic-plant nutrients (biostimulants) found in municipal and industrial waterwater are considered to be a major cause of regional water-quality problems. Other water-quality problems in the region are commonly attributed to pesticides found in agricultural wastewater and potentially pathogenic bacteria in municipal-wastewater discharges and in storm-water runoff. The geographical distribution and magnitude of wastewater discharges in the bay region, particularly those from municipalities and industries, is largely a function of population, economic growth, and urban development. As might be expected, the total volume of wastewater has increased in a trend paralleling this growth and development. More significant, perhaps, is the fact that the total volume parameters such as BOD (biochemical oxygen demand), biostimulant concentrations, and toxicity, has increased despite large expenditures on new and improved municipal- and industrial-wastewater-treatment plants. Also, pollutant loadings from other major source, such as agriculture and storm-water runoff, have increased. At the time of writing (1972), many Federal, State, regional, and local agencies are engaged in a comprehensive wastewater-management-planning effort for the entire bay region. Initial objectives of this planning effort are: (1) the consolidation and coordination of loosely integrated wastewater-management facilities and (2) the elimination of wastewater discharges to ecologically sensitive areas, such as fresh-water streams and shallow extremities of San Francisco Bay. There has been some investigation of potential long-range wastewater-management alternatives based upon disposal in deep water in the bay, in the Pacific Ocean, or on land. Also, wastewater-reclamation and water-reuse concepts seem to be growing in favor with the public and should become and important part of future wastewater-management plans. Because most wastewater-reclamation and water-reuse systems would involve the use of land (that is agricultural irrigation, ground-water recharge, recreational reservoirs) local and regional lang-use planners can ass much to wastewater-management planning by identifying local and subregional waterwater-reclamation and water-reuse possibilities within their jurisdictions and integrating them with future land-use plans. The timely participation of planner is essential because Federal and State planning and funding deadlines for a regional wastewater-management system become effective in July 1973 and 1974, respectively.

California↗

USGS1996

Circulation and effluent dilution modeling in Massachusetts Bay : model implementation, verification and results

A three-dimensional hydrodynamic model was developed as part of a cooperative U.S. Geological Survey/Massachusetts Water Resources Authority program to study contaminated sediment accumulation and transport in Massachusetts Bay. This report details the development of the model and assesses how well the model represents observed currents and water properties in the bay. It also summarizes circulation and comparative effluent dilution simulations from existing and future Boston sewage outfalls over a three-year period from October 1, 1989 to December 31, 1992. The ECOM-si model, a semi-implicit version of the Blumberg and Mellor (1987) Estuarine, Coastal and Ocean Model, is shown to reproduce many of the important hydrodynamical features of Massachusetts Bay: the seasonal evolution of the pycnocline, the mean flow pattern, and the strength of sub-tidal current fluctuations. Throughout the simulation period, during both vertically well-mixed and stratified conditions, the seasonal statistics of observed currents are well-represented by the model. The model is therefore appropriate for studying the average dilution of sewage effluent and other continuously discharged substances over seasonal time scales. The ability of the model to reproduce individual flow events varies with season and location within the bay. Flow events during unstratified conditions in western Massachusetts Bay are particularly well-represented, indicating that the model is appropriate for studying processes such as the transport of suspended material from the future outfall site due to winter storms. Individual flow events during stratified conditions and in the offshore Stellwagen Bank region, however, are less well-represented due to small length scales (caused by upwelling and river discharge events) coupled with insufficient data to specify open boundary forcing from the Gulf of Maine. Thus while the model might be used to answer issues such as the frequency with which Gulf of Maine river plumes visit the new outfall site, attempting to predict whether a particular plume would visit the outfall site could be problematic. Comparative simulations of effluent discharged from the existing and future Boston outfalls show that the region of relatively high effluent concentrations (1 part effluent to 200 parts sea water) is significantly smaller with the future outfall and is limited to Western Massachusetts Bay during both unstratified and stratified seasons. The region of even higher concentration (1 part effluent to 50 parts sea water) that covers much of Boston Harbor with the existing outfall is non-existent in the future outfall simulation. Additional simulations of chlorination plant failure predict that the offshore location of the future outfall will lead to dramatically lower levels of pathogens at area beaches.

Open-File Report↗

USGS2025

Status of water-quality conditions in the United States, 2010–20

Degradation of water quality can make water harmful or unusable for humans and ecosystems. Although many studies have assessed the effect of individual constituents or narrow suites of constituents on freshwater systems, no consistent, comprehensive assessment exists over the wide range of water-quality effects on water availability. Using published studies, data, and models completed at regional or national scales in the United States during 2010–20, this chapter moves towards a comprehensive assessment by summarizing how selected anthropogenic and geogenic water-quality constituents affect national-scale water availability for human and ecosystem needs. Several types of human health, agricultural, ecological, and beneficial-use standards or thresholds were used to provide context for categorizing surface-water and groundwater quality. Water availability for human and ecological use is limited by elevated concentrations of geogenic and anthropogenic constituents in surface and groundwater. Elevated concentrations of five geogenic constituents (arsenic, manganese, strontium, radium, and adjusted gross alpha) are common in groundwater and collectively affect the drinking water supply to over 30 million people. Surface water sourced drinking water supplies are impaired in about a third of assessed stream miles, most commonly because of non-mercury metals and salinity. Health-based violations at community water systems may disproportionately affect socially vulnerable communities. Ecological water uses are predominantly limited by nutrients, sediment, temperature, pathogens, salinity, and pesticides. Water availability for human and ecological use is adversely affected by human activities including human contaminant sources (for example, wastewater, agriculture), processes (for example, dredging, groundwater pumping), or permanent landscape modifications (for example, dams, urbanization). Primary contaminant sources vary spatially and include fertilizer and manure, atmospheric deposition, wastewater treatment plants, urban land, and a range of natural sources. Contaminants of emerging concern, contaminants without regulatory thresholds, and mixtures of geogenic and anthropogenic water contaminants also contribute to ecological degradation and human exposure.

conterminous United States↗

USGS1978

Summary appraisals of the nation's ground-water resources – Tennessee region

Ground water is an abundant and little-used resource in the Tennessee Region, a 41,000 square mile area dominated by the Tennessee River system and including parts of Alabama, Georgia, Kentucky, Mississippi, North Carolina, Tennessee, and Virginia. One-fifth to one-fourth of the precipitation that falls on the region enters the ground-water reservoirs. During the year approximately the same amount of water leaves the ground-water system, sustaining the dry-weather flow of streams. Recharge for the region is about 22,000 million gallons per day or 0.5 million gallons per day per square mile. The major types of aquifers in the region are unconsolidated material (including sand and regolith), carbonate rocks, and fractured noncarbonate rocks. One or more of these aquifer types occurs in each of the six physiographic subdivisions of the region. The productivity of these aquifers depends on their hydraulic properties and on the distribution of these properties. The unconsolidated sand aquifers are the most homogeneous in composition and most predictable in occurrence. These aquifers commonly yield 200 to 600 gallons per minute per well depending on the thickness of sand penetrated. The most difficult aquifers to predict in regard to depth and yield are the carbonate rocks. In these aquifers it is possible to drill dry holes within a few hundred feet of wells capable of producing several thousand gallons per minute. However, with an adequate reconnaissance study to determine the occurrence of ground water and a planned test drilling program, yields of up to 300 gallons per minute per well can be expected in the carbonate aquifers. Potential yields from the fractured noncarbonate aquifers are lower than in the carbonate rocks. The chemical and physical properties of ground water in the Tennessee Region are usually within the limits recommended by the Environmental Protection Agency for drinking water, and the ground water in all but some very shallow aquifers tends to be free of pathogenic microorganisms. Saline water is not known to occur in significant quantities in the region. In 1970, 173 million gallons per day of ground water were used in the Tennessee Region. This was less than 8 percent of the total quantity of water used in the region and only 0.8 percent of the estimated ground-water recharge. Ground water is used chiefly as a source of water supply for rural areas and small towns. A lesser amount is used by industries and commercial establishments located beyond the limits of municipal water-supply systems. However, there is potential for significantly increased use in order to augment surface-water supplies and to utilize the total water resource more efficiently. Hydrologic studies and adequate test drilling would greatly increase the chances of locating large amounts of ground water, especially in the nine-tenths of the Tennessee Region that is underlain by either carbonate rocks or fractured noncarbonate rocks which have highly variable water-bearing properties. Collectively, such studies are useful in developing a concept of the hydrologic system which would permit the development of criteria for selecting well sites in other areas with a similar geological and hydrological setting. Hydrologic studies that include test drilling have been conducted in all parts of the region except the Cumberland Plateau. Some of the basic data necessary for hydrologic studies, such as geologic maps, well records, and streamflow records are available throughout the region. However, detailed information on groundwater levels, ground-water quality, and aquifer characteristics are not equally available throughout the region. This type of information cannot be obtained quickly when it is needed; it must be the product of a continuing program of studies designed to evaluate the Tennessee Region's ground-water resource. Because of the interdependence of ground water and surface water, water management efforts can be fully effective only if they involve the whole water resource. In the Tennessee Region, surface water is highly controlled, but there is at present no regionwide water-resources management plan that includes ground water.

Tennessee↗

USGS2004

Constituent loads and flow-weighted average concentrations for major subbasins of the upper Red River of the North Basin, 1997-99

Data were collected at 11 water-quality sampling sites in the upper Red River of the North (Red River) Basin from May 1997 through September 1999 to describe the water-quality characteristics of the upper Red River and to estimate constituent loads and flow-weighted average concentrations for major tributaries of the Red River upstream from the bridge crossing the Red River at Perley, Minn. Samples collected from the sites were analyzed for 5-day biochemical oxygen demand, bacteria, dissolved solids, nutrients, and suspended sediment. Concentration data indicated the median concentrations for most constituents and sampling sites during the study period were less than existing North Dakota and Minnesota standards or guidelines. However, more than 25 percent of the samples for the Red River at Perley, Minn., site had fecal coliform concentrations that were greater than 200 colonies per 100 milliliters, indicating an abundance of pathogens in the upper Red River Basin. Although total nitrite plus nitrate concentrations generally increased in a downstream direction, the median concentrations for all sites were less than the North Dakota suggested guideline of 1.0 milligram per liter. Total and dissolved phosphorus concentrations also generally increased in a downstream direction, but, for those constituents, the median concentrations for most sampling sites exceeded the North Dakota suggested guideline of 0.1 milligram per liter. For dissolved solids, nutrients, and suspended sediments, a relation between constituent concentration and streamflow was determined using the data collected during the study period. The relation was determined by a multiple regression model in which concentration was the dependent variable and streamflow was the primary explanatory variable. The regression model was used to compute unbiased estimates of annual loads for each constituent and for each of eight primary water-quality sampling sites and to compute the degree of uncertainty associated with each estimated annual load. The estimated annual loads for the eight primary sites then were used to estimate annual loads for five intervening reaches in the study area. Results were used as a screening tool to identify which subbasins contributed a disproportionate amount of pollutants to the Red River. To compare the relative water quality of the different subbasins, an estimated flow-weighted average (FWA) concentration was computed from the estimated average annual load and the average annual streamflow for each subbasin. The 5-day biochemical oxygen demands in the upper Red River Basin were fairly small, and medians ranged from 1 to 3 milligrams per liter. The largest estimated FWA concentration for dissolved solids (about 630 milligrams per liter) was for the Bois de Sioux River near Doran, Minn., site. The Otter Tail River above Breckenridge, Minn., site had the smallest estimated FWA concentration (about 240 milligrams per liter). The estimated FWA concentrations for dissolved solids for the main-stem sites ranged from about 300 to 500 milligrams per liter and generally increased in a downstream direction. The estimated FWA concentrations for total nitrite plus nitrate for the main-stem sites increased from about 0.2 milligram per liter for the Red River below Wahpeton, N. Dak., site to about 0.9 milligram per liter for the Red River at Perley, Minn., site. Much of the increase probably resulted from flows from the tributary sites and intervening reaches, excluding the Otter Tail River above Breckenridge, Minn., site. However, uncertainty in the estimated concentrations prevented any reliable conclusions regarding which sites or reaches contributed most to the increase. The estimated FWA concentrations for total ammonia for the main-stem sites increased from about 0.05 milligram per liter for the Red River above Fargo, N. Dak., site to about 0.15 milligram per liter for the Red River near Harwood, N. Dak., site. The increase resulted from a decrease in flows in the Red River above Fargo, N. Dak., to the Red River near Harwood, N. Dak., intervening reach and the large load for that reach. The estimated FWA concentrations for total organic nitrogen for the main-stem sites were relatively constant and ranged from about 0.5 to 0.7 milligram per liter. The relatively constant concentrations were in sharp contrast to the total nitrite plus nitrate concentrations, which increased about fivefold between the Red River below Wahpeton, N. Dak., site and the Red River at Perley, Minn., site. The Red River near Harwood, N. Dak., to the Red River at Perley, Minn., intervening reach had the largest estimated FWA concentration for total nitrogen (about 2.9 milligrams per liter), but the estimate was highly uncertain. The Otter Tail River above Breckenridge, Minn., site had the smallest concentration (about 0.6 milligram per liter). The estimated FWA concentrations for total nitrogen for the main-stem sites increased from about 0.9 milligram per liter for the Red River at Hickson, N. Dak., site to about 1.6 milligrams per liter for the Red River at Perley, Minn., site. The Sheyenne River at Harwood, N. Dak., site had the largest estimated FWA concentration for total phosphorus (about 0.5 milligram per liter). The Otter Tail River above Breckenridge, Minn., site had the smallest concentration (about 0.1 milligram per liter). The estimated FWA concentrations for total phosphorus for the main-stem sites increased from about 0.15 milligram per liter for the Red River below Wahpeton, N. Dak., site to about 0.35 milligram per liter for the Red River at Perley, Minn., site. The estimated FWA concentrations for suspended sediment for the main-stem sites increased from about 50 milligrams per liter for the Red River below Wahpeton, N. Dak., site to about 300 milligrams per liter for the Red River at Perley, Minn., site. Much of the increase occurred as a result of the large yield of suspended sediment from the Red River below Wahpeton, N. Dak., to the Red River at Hickson, N. Dak., intervening reach.

Scientific Investigations Report↗

USGS2004

Environmental factors and chemical and microbiological water-quality constituents related to the presence of enteric viruses in ground water from small public water supplies in southeastern Michigan

A study of small public ground-water-supply wells that produce water from discontinuous sand and gravel aquifers was done from July 1999 through July 2001 in southeastern Michigan. Samples were collected to determine the occurrence of viral pathogens and microbiological indicators of fecal contamination (“indicators”), determine whether indicators are adequate predictors of the presence of enteric viruses, and determine the factors that affect the presence of enteric viruses. Small systems are those that serve less than 3,300 people. Samples were analyzed for specific enteric viruses by reverse transcriptase-polymerase chain reaction (RT-PCR), for culturable viruses by cell culture, and for the indicators total coliforms, Escherichia coli (E. coli) , enterococci, and F-specific and somatic coliphage. Ancillary environmental and water-quality data were collected or compiled. A total of 169 regular samples and 32 replicate pairs were collected from 38 wells. Replicate pairs were samples collected at the same well on the same date. One well was sampled 6 times, 30 wells were sampled five times, 6 wells were sampled twice, and 1 well was sampled once. By use of RT-PCR, enterovirus was found in four wells (10.5 percent) and hepatitis A virus (HAV) in five wells (13.2 percent). In two of these wells, investigators found both enterovirus and HAV, but on different sampling dates. Culturable viruses were found one time in two wells (5.9 percent), and neither of these wells was positive for viruses by use of RT-PCR on any sampling date. If results for all viruses are combined, 9 of the 38 small public-supply wells were positive for enteric viruses (23.7 percent) by either cell culture or RT-PCR. One or more indicators were found in 18 of 38 wells. Total coliforms, E. coli , enterococci, and F-specific and somatic coliphage were found in 34.2, 10.5, 15.8, 5.9, and 5.9 percent, respectively, of the wells tested. In only 3 out of 18 wells were samples positive for an indicator on more than one date at the same well. The co-occurrence of enteric viruses and any indicator was 55.6 percent; five out of the nine virus-positive wells were also found to be positive for an indicator. Two wells with detections of viruses had a detection of total coliforms, one well had a detection of E. coli , one of enterococci, and one of F-specific coliphage. On a per sample basis, of 11 samples that were positive for enteric viruses, indicator bacteria co-occurred in only 2 samples, and coliphage were not present in any. More virus-positive samples were found at sites served by septic systems than those served by sewerlines. Sampling condition (ground water or a mixture of tank and ground water), distance to septic system, type of and distance to nearest surface-water body, well characteristics, or land use were not related to the presence of viruses or indicators. Among continuous water-quality variables, statistically significant relations were found between total coliforms and dissolved organic carbon and between total coliforms and iron. There was a statistically significant relation between chloride concentrations >20 mg/L and detections of total coliforms. Presence of nitrate and nitrite was related to the presence of other indicators ( E. coli , enterococci, and F-specific and somatic coliphage) or enteric viruses, but not to total coliforms. The data indicated that chloride-to-bromide (C1:Br) ratios may be useful as a screening tool for total coliforms and enteric viruses but not for E. coli , enterococci, and F-specific and somatic coliphage. This study provides evidence for fecal contamination of ground water from small public-supply wells, at least on an intermittent basis. Collecting data on multiple lines of evidence would be needed to reliably predict the presence of enteric viruses and protect public health. Future data collection toward this end could include repeat sampling several times a year for different indicators, measuring dissolved-organic carbon, nitrate plus nitrite, and (or) chloride concentrations, or determining C1:Br ratios. The presence of a site served by a septic system is an indication that the well may be more vulnerable to contamination than a site served by a sewerline.

Michigan↗

USGS2005

An assessment of optical properties of dissolved organic material as quantitative source indicators in the Santa Ana River basin, Southern California

The ability to rapidly, reliably, and inexpensively characterize sources of dissolved organic material (DOM) in watersheds would allow water management agencies to more quickly identify problems in water sources, and to more efficiently allocate water resources by, for example, permitting real-time identification of high-quality water suitable for ground-water recharge, or poor-quality water in need of mitigation. This study examined the feasibility of using easily measurable intrinsic optical properties' absorbance and fluorescence spectra, as quantitative indicators of DOM sources and, thus, a predictor of water quality. The study focused on the Santa Ana River Basin, in southern California, USA, which comprises an area of dense urban development and an area of intense dairy production. Base flow in the Santa Ana Basin is primarily tertiary treated wastewater discharge. Available hydrologic data indicate that urban and agricultural runoff degrades water quality during storm events by introducing pathogens, nutrients, and other contaminants, including significant amounts of DOM. These conditions provide the basis for evaluating the use of DOM optical properties as a tracer of DOM from different sources. Sample spectra representing four principal DOM sources were identified among all samples collected in 1999 on the basis of basin hydrology, and the distribution of spectral variability within all the sample data. A linear mixing model provided quantitative estimates of relative endmember contribution to sample spectra for monthly, storm, and diurnal samples. The spectral properties of the four sources (endmembers), Pristine Water, Wastewater, Urban Water, and Dairy Water, accounted for 94 percent of the variability in optical properties observed in the study, suggesting that all important DOM sources were represented. The scale and distribution of the residual spectra, that not explained by the endmembers, suggested that the endmember spectra selected did not adequately represent Urban Water base flow. However, model assignments of sources generally agreed well with those expected, based on sampling location and hydrology. The results suggest that with a fuller characterization of the endmember spectra, analysis of optical properties will provide rapid quantitative estimates of the relative contribution of DOM sources in the Santa Ana Basin.

Scientific Investigations Report↗

USGS2006

Assessment of the use of selected chemical and microbiological constituents as indicators of wastewater in curtain drains from home sewage-treatment systems in Medina County, Ohio

Many home sewage-treatment systems (HSTS) in Ohio use curtain or perimeter drains to depress the level of the subsurface water in and around the systems. These drains could possibly intercept partially untreated wastewater and release potential pathogens to ground-water and surface-water bodies. The quality of water in curtain drains from two different HSTS designs in Medina County, Ohio, was investigated using several methods. Six evaporation-transpiration-absorption (ETA) and five leach-line (LL) systems were investigated by determining nutrient concentrations, chloride/bromide ratios (Cl/Br), Escherichia coli (E. coli ) concentrations, coliphage genotyping, and genetic fingerprinting of E. coli. Water samples were collected at 11 sites and included samples from curtain drains, septic tanks, and residential water wells. Nitrate concentrations in the curtain drains ranged from 0.03 to 3.53 mg/L (milligrams per liter), as N. Concentrations of chloride in 10 of the 11 curtain drains ranged from 5.5 to 21 mg/L; the chloride concentration in the eleventh curtain drain was 340 mg/L. Bromide concentrations in 11 curtain drains ranged from 0.01 to 0.22 mg/L. Cl/Br ratios ranged from 86 to 2,000. F-specific coliphage were not found in any curtain-drain samples. Concentrations of E. coli in the curtain drains ranged from 1 to 760 colonies per 100 milliliters. The curtain-drain water-quality data were evaluated to determine whether HSTS-derived water was present in the curtain drains. Nutrient concentrations were too low to be of use in the determination. The Cl/Br ratios appear promising. Coliphage was not detected in the curtain drains, so genotyping could not be attempted. E. coli concentrations in the curtain drains were all less than those from the corresponding HSTS; only one sample exceeded the Ohio secondary-contact water-quality standard. The genetic fingerprinting data were inconclusive because multiple links between unrelated sites were found. Although the curtain-drain samples from the ETA systems showed somewhat more evidence of the presence of HSTS water than did the LL systems, most of the approaches were inconclusive by themselves. The best evidence of HSTS water, from the Cl/Br ratios, indicates that the water in 10 of the 11 curtain drains, at both HSTS types, was a mixture of dilute ground water and HSTS-derived water; the 11th drain also show some effects of the HSTS, although road salt-affected water may be present. Therefore, it appears that there is no difference between the ETA and LL systems with respect to the water quality in curtain drains.

Scientific Investigations Report↗

USGS2007

Water-quality characteristics for selected sites within the Milwaukee Metropolitan Sewerage District planning area, Wisconsin, February 2004-September 2005

The Milwaukee Metropolitan Sewerage District (MMSD) Corridor Study is a three-phase project designed to improve the understanding of water resources in the MMSD planning area to assist managers and policy makers in their decisions. Phase I of the Study involved the compilation of existing data from multiple agencies into a single database. These data were analyzed to identify spatial, temporal, and technological gaps in the planning area, and were used to develop Phase II of the Study. Phase II, the subject of this report, involved an intensive data-collection effort by the U.S. Geological Survey (USGS) in cooperation with MMSD (from February, 2004, through September, 2005). This phase addressed the data gaps identified in Phase I and completed a baseline assessment of water quality for selected stream and harbor sites in the MMSD planning area. This baseline assessment included evaluations of surface-water chemistry and microbial concentrations in the streams and harbor sites; additionally, stream sites were evaluated for discharge, sediment chemistry, fish-tissue chemistry, habitat, and the quality of biological communities (including fish, macroinvertebrates, and algae). In all, data were collected at 15 stream and 6 harbor sites within the MMSD planning area, including manual sampling and analysis for more than 220 water-quality properties and constituents at all 21 sites, stream-discharge data for 14 stream sites, and automated water-quality sampling at 4 stream sites. A bioassessment during autumn 2004 included collection of biologic-community data and stream-habitat data at wadeable streams. Quartiles of Phase II aggregate bioassessment rankings were used to divide the 14 wadeable stream sites into four groups to investigate relations between bioassessment data and site characteristic and water-quality data. Quartile numbers reflect relative water quality: quartile 1 contained sites where the bioassessment data indicated the least-degraded water quality among those sampled, and quartile 4 contained sites that indicated the most-degraded water quality. Quartiles contained the following stream sites: Quartile 1: Milwaukee River near Cedarburg, Milwaukee River at Milwaukee, Jewel Creek, and Menomonee River at Menomonee Falls; Quartile 2: Willow Creek, Root River near Franklin, and Root River at Grange Avenue; Quartile 3: Menomonee River at Wauwatosa, Oak Creek, and Little Menomonee River; and Quartile 4: Honey Creek, Underwood Creek, Lincoln Creek, and Kinnickinnic River. Site characteristics (in this case, drainage area and land use) and selected water-quality data were summarized based on the four bioassessment quartiles to determine if there were relations with the aggregate bioassessment rankings. In general, sites having the largest drainage basins with the lowest proportion of urban land use were in quartile 1, and the smallest drainage basins with the highest proportion of urban land use were in quartile 4. Major ions, indicator organisms, and wastewater compounds generally had the lowest overall results in quartile 1 and highest overall results in quartile 4, with intermediate results in quartiles 2 and 3. Results for other constituent types (nutrients, mercury, pathogenic organisms, and bed sediment) were mixed, with results for some constituents decreasing from quartile 1 to quartile 4. Where sufficient Phase I data were available, summary statistics (including medians) for chemical and biological data were calculated, allowing some comparisons to be made between Phase I and Phase II data. Comparisons between Phase I and Phase II results indicated a variety of changes with respect to water quality. Concentrations of chloride, nitrate, chlorophyll a, total phosphorus in water; arsenic in bed sediment; and fish Index of Biotic Integrity ratings generally indicated declines in water quality. However, concentrations of total nitrogen, suspended sediment, and fecal coliform in water; some trace eleme

Wisconsin↗

USGS2007

Summary of Optical-Backscatter and Suspended-Sediment Data, Tomales Bay Watershed, California, Water Years 2004, 2005, and 2006

The U.S. Geological Survey, in cooperation with Point Reyes National Seashore, is studying suspended-sediment transport dynamics in the two primary tributaries to Tomales Bay, Lagunitas Creek and Walker Creek. Suspended-sediment samples and continuous optical backscatter (turbidity) data were collected at three locations during water years 2004?06 (October 1, 2003?September 30, 2006): at two sites in the Lagunitas Creek watershed and at one site in the Walker Creek watershed. Sediment samples were analyzed for suspended-sediment concentration, grain size, and turbidity. Data were used to estimate mean daily and annual seasonal suspended-sediment discharge, which were published in U.S. Geological Survey Annual Water-Data Reports. Data were utilized further in this report to develop field-based optical-backscatter calibration equations, which then were used to derive a continuous time series (15-minute interval) of suspended-sediment concentrations. Sensor fouling and aggradation of the channel bed occurred periodically throughout the project period, resulting in data loss. Although periods of data loss occurred, collection of optical sensor data improved our understanding of suspended-sediment dynamics in the Lagunitas Creek and Walker Creek watersheds by providing continuous time-series storm event data that were analyzed to determine durations of elevated sediment concentrations (periods of time when suspended-sediment concentration was greater than 100 mg/L). Data derived from this project contributed baseline suspended-sediment transport information that will be used to develop and implement sediment total maximum daily loads for Tomales Bay and its tributary watersheds, and provides supporting information for additional total maximum daily loads (pathogens, nutrients, and mercury) and restoration efforts for four federally listed aquatic species that are affected directly by sediment loading in the Tomales Bay watershed. In addition, this project provided an opportunity to evaluate the suitability of using optical data as a surrogate for more traditional labor-intensive methods of measuring suspended-sediment transport in steep coastal watersheds.

Scientific Investigations Report↗

USGS2010

Analysis of the Shallow Groundwater Flow System at Fire Island National Seashore, Suffolk County, New York

Fire Island National Seashore (FIIS) occupies 42 kilometers of the barrier island for which it is named that lies off the southern shore of Suffolk County, N.Y. Freshwater in the highly permeable, sandy aquifer underlying Fire Island is bounded laterally by marine surface waters and at depth by saline groundwater. Interspersed throughout FIIS are 17 pre-existing residential communities that in summer months greatly increase in population through the arrival of summer residents and vacationers; in addition, the National Park Service (NPS) has established several facilities on the island to accommodate visitors to FIIS. The 2.2 million people estimated by the NPS to visit Fire Island annually impact groundwater quality through the release of waste-derived contaminants, such as nutrients, pathogens, and organic compounds, into the environment. Waste-contaminated groundwater can move through the aquifer and threaten the ecological health of the adjacent back-barrier estuaries to which much of the groundwater ultimately discharges. In 2004, the U.S. Geological Survey (USGS), in cooperation with the NPS, began a 3-year investigation to (1) collect groundwater levels and water-quality (nutrient) samples, (2) develop a three-dimensional model of the shallow (water-table) aquifer system and adjacent marine surface waters, and (3) calculate nitrogen loads in simulated groundwater discharges from the aquifer to back-barrier estuaries and the ocean. The hydrogeology of the shallow aquifer system was characterized from the results of exploratory drilling, geophysical surveying, water-level monitoring, and water-quality sampling. The investigation focused on four areas-the communities of Kismet and Robbins Rest, the NPS Visitor Center at Watch Hill, and the undeveloped Otis Pike Fire Island High Dune Wilderness. Thirty-five observation wells were installed within FIIS to characterize subsurface hydrogeology and establish a water-table monitoring network in the four study areas. A variable-density model of the shallow aquifer system and adjacent marine surface waters was developed to simulate groundwater flow patterns and rates. Nitrogen loads from the shallow aquifer system were calculated from representative total nitrogen (TN) concentrations and simulated groundwater discharges to back-barrier estuaries and the ocean. The model simulates groundwater directions, velocities, and discharge rates under 2005 mean annual conditions. Groundwater budgets were developed for recharge areas of similar land use that contribute freshwater to back-barrier estuaries, the ocean, and subsea-discharge zones. Total freshwater discharge from the shallow aquifer system is about 43,500 cubic meters per day (m3/d) (79.8 percent) to back-barrier estuaries and about 10,200 m3/d (18.7 percent) to the ocean; about 836 m3/d (1.5 percent) may exit the system as subsea underflow. The total contribution of fresh groundwater to shoreline discharge zones amounts to about 53,700 m3/d (98.5 percent). The median age of freshwater discharged to back-barrier estuaries and the ocean was 3.4 years, and the 95th-percentile age was 20 years. The TN concentrations and loads under 2005 mean annual conditions for areas that contribute fresh groundwater to back-barrier estuaries and the ocean were calculated for the principal land uses on Fire Island. The overall TN load from the shallow aquifer system to shoreline discharge zones is about 16,200 kilograms per year (kg/yr) (82.2 percent) to back-barrier estuaries and about 3,500 kg/yr (17.8 percent) to the ocean. The overall TN load to marine surface waters amounts to about 19,700 kg/yr-roughly 6 percent of the annual TN load from shallow groundwater entering the South Shore Estuary Reserve (SSER) from the Suffolk County mainland, which is about 345,000 kg/yr. In contrast to the TN load from shallow groundwater for the SSER watershed, which annually yields about 353 kilograms per square kilometer (kg/km2), the overall TN loa

Scientific Investigations Report↗

USGS2012

Groundwater quality in the Columbia Plateau, Snake River Plain, and Oahu basaltic-rock and basin-fill aquifers in the Northwestern United States and Hawaii, 1992-2010

This assessment of groundwater-quality conditions of the Columbia Plateau, Snake River Plain, and Oahu for the period 1992–2010 is part of the U.S. Geological Survey’s National Water Quality Assessment (NAWQA) program. It shows where, when, why, and how specific water-quality conditions occur in groundwater of the three study areas and yields science-based implications for assessing and managing the quality of these water resources. The primary aquifers in the Columbia Plateau, Snake River Plain, and Oahu are mostly composed of fractured basalt, which makes their hydrology and geochemistry similar. In spite of the hydrogeologic similarities, there are climatic differences that affect the agricultural practices overlying the aquifers, which in turn affect the groundwater quality. Understanding groundwater-quality conditions and the natural and human factors that control groundwater quality is important because of the implications to human health, the sustainability of rural agricultural economies, and the substantial costs associated with land and water management, conservation, and regulation. The principal regional aquifers of the Columbia Plateau, Snake River Plain, and Oahu are highly vulnerable to contamination by chemicals applied at the land surface; essentially, they are as vulnerable as many shallow surficial aquifers elsewhere. The permeable and largely unconfined character of principal aquifers in the Columbia Plateau, Snake River Plain, and Oahu allow water and chemicals to infiltrate to the water table despite depths to water commonly in the hundreds of feet. The aquifers are essentially unconfined over large areas, having few extensive clay layers to impede infiltration through permeable volcanic rock and alluvial sediments. Agriculture is intensive in all three study areas, and heavy irrigation has imposed large artificial flows of irrigation recharge that rival or exceed natural recharge rates. Fertilizers and pesticides applied at land surface are leached from soil and transported to deep water tables with the infiltrating irrigation recharge, resulting in a layer of degraded water quality overlying better quality regional groundwater beneath. This “irrigation-recharge layer” is best known on Oahu, where it has been studied since the 1960s; however, the extent of nitrate and pesticide contamination in the Columbia Plateau and Snake River Plain indicate that the same situation exists in those areas. Contamination from agricultural and urban activities is present not only at shallow depths in surficial materials of the three areas, but extends regionally in the deep, principal bedrock aquifers that are tapped for drinking water by domestic and public-supply wells. Naturally occurring constituents and nitrate concentrations above human-health benchmarks—Maximum Contaminant Levels (MCLs), and Health-Based Screening Levels (HBSLs)—were more common in the Columbia Plateau and the Snake River Plain than in Oahu. Concentrations of anthropogenic constituents (constituents related to human activities) above human-health benchmarks were more common in Oahu. Naturally occurring contaminants, such as arsenic and radon, may be present in groundwater at concentrations of potential concern for human health in relatively undeveloped settings that otherwise may not be perceived as susceptible to contamination. Even though the median depth to groundwater in Oahu is more than 300 feet, the common occurrence of anthropogenic compounds in groundwater indicates that Oahu has a high susceptibility to contamination. Nitrate concentrations in groundwater were above the national background concentrations of 1 milligram per liter (mg/L) in all three study areas. In the Columbia Plateau, nitrate exceeded the human-health benchmark of 10 mg/L in 20 percent of the wells sampled. In the Snake River Plain, nitrate exceeded the human-health benchmark of 10 mg/L in 3 percent of the wells sampled. Nitrate can persist in groundwater for years and even decades in the oxygen-rich groundwater of the Columbia Plateau and the Snake River Plain, so prudent groundwater protection measures are critical to protect drinking water resources by reducing nitrate leaching from the land surface. Nitrate logistic regression models indicated that areas with a high percentage of land in crops (such as potatoes or sugarcane) and soils with low amounts of organic matter are most likely to have elevated nitrate concentrations in the groundwater. Areas where agricultural activities were absent had much lower probabilities of detecting elevated nitrate concentrations. The Columbia Plateau had a much higher probability of having elevated nitrate concentrations, with most of the land area having greater than a 50 percent probability of elevated nitrate concentrations. Oahu and the Snake River Plain had a much lower probability of having elevated nitrate concentrations because of their lower percentage of agricultural land. Pesticides were detected at many sites in groundwater of the Columbia Plateau, Snake River Plain, and Oahu but generally at low concentrations below human-health benchmarks. Atrazine and its degradate (a compound produced from the breakdown of a parent pesticide), deethylatrazine, were the most commonly detected pesticides in groundwater sampled in the Columbia Plateau and Snake River Plain. Bromacil was the most commonly detected pesticide on Oahu. The other pesticides most commonly detected in the study areas include simazine, hexazinone, metribuzin, diuron, prometon, metolachlor, p,p’ -DDE, dieldrin, 2-4-D, and alachlor. DDE (a degradate of DDT) and dieldrin are still being detected in groundwater despite having been banned for more than 30 years. Codetection of multiple pesticides in water from a single well was common. The widespread occurrence of pesticides in groundwater in the study areas indicates that the groundwater is highly susceptible to pesticide contamination. Some pesticides were detected in groundwater samples from all three study areas, but other pesticides were detected only in samples from Oahu, or only in samples from the Columbia Plateau and Snake River Plain. This is because some pesticides (such as atrazine) are broad-spectrum pesticides that are used on many crops in many different areas of the United States. Other pesticides (such as simazine, metribuzin, and metolachlor) are used on row crops (such as potatoes, barley, and alfalfa) grown in the Columbia Plateau and Snake River Plain, but not on pineapple or sugarcane grown in Oahu. Atrazine logistic-regression models indicate that areas with a high percentage of land in crops (such as potatoes or sugarcane), a low percentage of fallow land, and highly permeable soils with low amounts of organic matter are most likely to have atrazine detected in the groundwater. Areas where agricultural activities were absent had much lower probabilities of atrazine being detected. The Snake River Plain had a much higher probability of atrazine detections, with more than 50 percent of the land area having greater than a 50 percent probability of atrazine contamination. Oahu had a much lower probability of atrazine contamination, with only 24 percent of the land area having greater than a 50 percent probability of atrazine contamination. Oahu and the Columbia Plateau had some of the highest percentages of soil fumigant detections in groundwater in the United States. Soil fumigants are volatile organic compounds (VOCs) used as pesticides, which are applied to soils to reduce populations of plant parasitic nematodes (harmful rootworms), weeds, fungal pathogens, and other soil-borne microorganisms. They are used in Oahu and the Columbia Plateau on crops such as pineapple and potatoes. All three areas (Columbia Plateau, Snake River Plain, and Oahu) had fumigant concentrations exceeding human-health benchmarks for drinking water.

Hawai'i, Idaho, Nevada, Oregon, Utah, Washington, ↗

USGS2013

Evaluation of potential sources and transport mechanisms of fecal indicator bacteria to beach water, Murphy Park Beach, Door County, Wisconsin

Fecal Indicator Bacteria (FIB) concentrations in beach water have been used for many years as a criterion for closing beaches due to potential health concerns. Yet, current understanding of sources and transport mechanisms that drive FIB occurrence remains insufficient for accurate prediction of closures at many beaches. Murphy Park Beach, a relatively pristine beach on Green Bay in Door County, Wis., was selected for a study to evaluate FIB sources and transport mechanisms. Although the relatively pristine nature of the beach yielded no detection of pathogenic bacterial genes and relatively low FIB concentrations during the study period compared with other Great Lakes Beaches, its selection limited the number of confounding FIB sources and associated transport mechanisms. The primary sources of FIB appear to be internal to the beach rather than external sources such as rivers, storm sewer outfalls, and industrial discharges. Three potential FIB sources were identified: sand, swash-zone groundwater, and Cladophora mats. Modest correlations between FIB concentrations in these potential source reservoirs and FIB concentrations at the beach from the same day illustrate the importance of understanding transport mechanisms between FIB sources and the water column. One likely mechanism for transport and dispersion of FIB from sand and Cladophora sources appears to be agitation of Cladophora mats and erosion of beach sand due to storm activity, as inferred from storm indicators including turbidity, wave height, current speed, wind speed, sky visibility, 24-hour precipitation, and suspended particulate concentration. FIB concentrations in beach water had a statistically significant relation (p-value &lsaquo;0.05) with the magnitude of these storm indicators. In addition, transport of FIB in swash-zone groundwater into beach water appears to be driven by groundwater recharge associated with multiday precipitation and corresponding increased swash-zone groundwater discharge at the beach, as indicated by an increase in the specific conductance of beach water. Understanding the dynamics of FIB sources (sand, swash-zone groundwater, and Cladophora ) and transport mechanisms (dispersion and erosion from storm energy, and swash-zone groundwater discharge) is important for improving predictions of potential health risks from FIB in beach water.

Wisconsin↗

USGS2012

U.S. Geological Survey, National Wildlife Health Center, 2011 report of selected wildlife diseases

The National Wildlife Health Center (NWHC) was founded in 1975 to provide technical assistance in identifying, controlling, and preventing wildlife losses from diseases, conduct research to understand the impact of diseases on wildlife populations, and devise methods to more effectively manage these disease threats. The impetus behind the creation of the NWHC was, in part, the catastrophic loss of tens of thousands of waterfowl as a result of an outbreak of duck plague at the Lake Andes National Wildlife Refuge in South Dakota during January 1973. In 1996, the NWHC, along with other Department of Interior research functions, was transferred from the U.S. Fish and Wildlife Service to the U.S. Geological Survey (USGS), where we remain one of many entities that provide the independent science that forms the bases of the sound management of the Nation’s natural resources. Our mission is to provide national leadership to safeguard wildlife and ecosystem health through dynamic partnerships and exceptional science. The main campus of the NWHC is located in Madison, Wis., where we maintain biological safety level 3 (BSL–3) diagnostic and research facilities purposefully designed for work with wildlife species. The NWHC provides research and technical assistance on wildlife health issues to State, Federal, and international agencies. In addition, since 1992 we have maintained a field station in Hawaii, the Honolulu Field Station, which focuses on marine and terrestrial natural resources throughout the Pacific region. The NWHC conducts diagnostic investigations of unusual wildlife morbidity and mortality events nationwide to detect the presence of wildlife pathogens and determine the cause of death. This is also an important activity for detecting new, emerging and resurging diseases. The NWHC provides this crucial information on the presence of wildlife diseases to wildlife managers to support sound management decisions. The data and information generated also allows for further indepth analyses for determining the biological and ecological significance of disease events, detecting disease trends over time and space, as well as detecting any significant changes to how diseases manifest in the field. Moreover, this information allows us to gain insight into the significance of future wildlife disease events. The purpose of this report is to provide a sample of NWHC data that are available from our Laboratory Information Management System (LIMS). These data are presented in summary format with minimal statistical analysis and interpretation. The goal is to share these data with wildlife managers and other stakeholders, promote the use of NHWC data, and encourage the sharing of wildlife disease data to improve temporal and geographic surveillance coverage. Continued national surveillance for wildlife diseases is essential for providing early detection and warning of events that have the potential to result in harm to human health, economic losses, declines in wildlife populations, and subsequent ecological disturbances. Increased collaboration, coordination, and sharing of surveillance data will enhance this Nation’s ability to detect and respond to wildlife disease threats.

Scientific Investigations Report↗

USGS2017

Estimated fecal coliform bacteria concentrations using near real-time continuous water-quality and streamflow data from five stream sites in Chester County, Pennsylvania, 2007–16

Several streams used for recreational activities, such as fishing, swimming, and boating, in Chester County, Pennsylvania, are known to have periodic elevated concentrations of fecal coliform bacteria, a type of bacteria used to indicate the potential presence of fecally related pathogens that may pose health risks to humans exposed through water contact. The availability of near real-time continuous stream discharge, turbidity, and other water-quality data for some streams in the county presents an opportunity to use surrogates to estimate near real-time concentrations of fecal coliform (FC) bacteria and thus provide some information about associated potential health risks during recreational use of streams. The U.S. Geological Survey (USGS), in cooperation with the Chester County Health Department (CCHD) and the Chester County Water Resources Authority (CCWRA), has collected discrete stream samples for analysis of FC concentrations during March–October annually at or near five gaging stations where near real-time continuous data on stream discharge, turbidity, and water temperature have been collected since 2007 (or since 2012 at 2 of the 5 stations). In 2014, the USGS, in cooperation with the CCWRA and CCHD, began to develop regression equations to estimate FC concentrations using available near real-time continuous data. Regression equations included possible explanatory variables of stream discharge, turbidity, water temperature, and seasonal factors calculated using Julian Day with base-10 logarithmic (log) transformations of selected variables. The regression equations were developed using the data from 2007 to 2015 (101–106 discrete bacteria samples per site) for three gaging stations on Brandywine Creek (West Branch Brandywine Creek at Modena, East Branch Brandywine Creek below Downingtown, and Brandywine Creek at Chadds Ford) and from 2012 to 2015 (37–38 discrete bacteria samples per site) for one station each on French Creek near Phoenixville and White Clay Creek near Strickersville. Fecal coliform bacteria data collected by USGS in 2016 (about nine samples per site) were used to validate the equations. The best-fit regression equations included log turbidity and seasonality factors computed using Julian Day as explanatory variables to estimate log FC concentrations at all five stream sites. The adjusted coefficient of determination for the equations ranged from 0.61 to 0.76, with the strength of the regression equations likely affected in part by the limited amount and variability of FC bacteria data. During summer months, the estimated and measured FC concentrations commonly were greater than the Pennsylvania Department of Environmental Protection established standards of 200 and 400 colonies per 100 milliliters for water contact from May through September at the 5 stream sites, with concentrations typically higher at 2 sites (White Clay Creek and West Branch Brandywine Creek at Modena) than at the other 3 sites. The estimated concentrations of FC bacteria during the summer months commonly were higher than measured concentrations and therefore could be considered cautious estimates of potential human-health risk. Additional water-quality data are needed to maintain and (or) improve the ability of regression equations to estimate FC concentrations by use of surrogate data.

Pennsylvania↗

USGS2019

Spatial and temporal distribution of bacterial indicators and microbial-source tracking within Tumacácori National Historical Park and the upper Santa Cruz River, southern Arizona and northern Mexico, 2015–2016

Tumacácori National Historical Park (TUMA) in southern Arizona protects the culturally important Mission San José de Tumacácori, while also managing a part of the ecologically diverse riparian corridor of the Santa Cruz River. The quality of the water flowing through depends solely on upstream watershed activities, and among the water-quality issues concerning TUMA is the microbiological pathogens in the river introduced by human and animal sources that pose a significant human health risk to employees and visitors. The U.S. Geological Survey (USGS) conducted a 3-year study to understand the sources, timing, and distribution of the fecal-indicator bacteria Escherichia coli ( E. coli ) within TUMA and the upstream watershed. The information provided in this investigation is a result of a comprehensive approach to quantify the spatial and temporal variability of E. coli and suspended sediment in the Upper Santa Cruz River Watershed. Several types of flow were sampled from base flow to flood flow and at high frequency intervals (rise, peak, and recession) to determine daily variability, as well as seasonal variability. Hydrologic data collection and estimation techniques were used to establish a hydrologic relation with E. coli and suspended sediment. Furthermore, source tracking was used to describe the potential sources of E. coli . Models were developed that are expected to be useful for predicting E. coli concentrations to help TUMA managers understand instantaneous conditions to keep the public and staff informed about potentially harmful water-quality conditions. In addition, the concentration, flux, and source information will provide more accurate data for other surface-water modeling and can be useful in the development of total maximum daily load standards. This will help TUMA describe the water-quality conditions at the park and waters flowing through the park, as well as prioritize and help carry out future best-management actions to address these issues.

Tumacácori National Historical Park, Upper Santa C↗