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Integrated geoscience studies in the Greater Yellowstone Area - Volcanic, tectonic, and hydrothermal processes in the Yellowstone geoecosystem

Yellowstone National Park, rimmed by a crescent of older mountainous terrain, has at its core the Quaternary Yellowstone Plateau, an undulating landscape shaped by forces of volcanism, tectonism, and later glaciation. Its spectacular hydrothermal systems cap this landscape. From 1997 through 2003, the United States Geological Survey Mineral Resources Program conducted a multidisciplinary project of Yellowstone National Park entitled Integrated Geoscience Studies of the Greater Yellowstone Area, building on a 130-year foundation of extensive field studies (including the Hayden survey of 1871, the Hague surveys of the 1880s through 1896, the studies of Iddings, Allen, and Day during the 1920s, and NASA-supported studies starting in the 1970s—now summarized in USGS Professional Paper 729 A through G) in this geologically dynamic terrain. The project applied a broad range of scientific disciplines and state-of-the-art technologies targeted to improve stewardship of the unique natural resources of Yellowstone and enable the National Park Service to effectively manage resources, protect park visitors from geologic hazards, and better educate the public on geologic processes and resources. This project combined a variety of data sets in characterizing the surficial and subsurface chemistry, mineralogy, geology, geophysics, and hydrothermal systems in various parts of the park. The sixteen chapters presented herein in USGS Professional Paper 1717, Integrated Geoscience Studies in the Greater Yellowstone Area—Volcanic, Tectonic, and Hydrothermal Processes in the Yellowstone Geoecosystem , can be divided into four major topical areas: (1) geologic studies, (2) Yellowstone Lake studies, (3) geochemical studies, and (4) geophysical studies. The geologic studies include a paper by Ken Pierce and others on the influence of the Yellowstone hotspot on landscape formation, the ecological effects of the hotspot, and the human experience and human geography of the greater Yellowstone ecosystem as influenced by the Yellowstone hotspot. Another paper by Paul Carrara describes the recent movement of a large landslide block dated by tree-ring analyses in the Tower Falls area. The section under Yellowstone Lake studies begins with a classic paper by J. David Love and others on ancestral Lake Yellowstone. Other papers in this section include results and interpretation of the high-resolution bathymetric, seismic reflection, and submersible studies by Lisa Morgan and others. Ken Pierce and others describe results from their studies of shorelines along Yellowstone Lake and their interpretation of inflation-deflation cycles, tilting, and faulting in the Yellowstone caldera. The influence of sublacustrine hydrothermal vent fluids on the geochemistry of Yellowstone Lake is described by Laurie Balistrieri and others. In Pat Shanks and others’ chapter, hydrothermal reactions, stable-isotope systematics, sinter deposition, and spire formation are related to the geochemistry of sublacustrine hydrothermal deposits in Yellowstone Lake. The geochemical studies section considers park-wide geochemical systems in Yellowstone National Park. In Bob Rye and Alfred Truesdell’s paper, the question of recharge to the deep thermal reservoir underlying the geysers and hot springs of Yellowstone National Park is discussed. Irving Friedman and Dan Norton report on the chloride flux emissions from Yellowstone in their paper questioning whether Yellowstone is losing its steam. Wildlife issues as addressed by examining trace-element and stable-isotope geochemistry are discussed in a chapter by Maurice Chaffee and others. In another chapter by Chaffee and others, natural and anthropogenic anomalies and their potential impact on the environment using geochemistry is reported. Pam Gemery-Hill and others present geochemical data for selected rivers, lake waters, hydrothermal vents, and subaerial geysers for the time interval of 1996–2004. The life cycle of gold deposits near the northeast corner of the park is discussed by Brad Van Gosen. Under the geophysical studies segment, Ray Kokaly and others use AVIRIS (Airborne Visible and Infrared Spectroscopy) data to map vegetation cover and microbial communities in Yellowstone National Park. Eric Livo and others report their results using AVIRIS data on hydrothermally altered rock and hot-spring deposits. In his final paper following a half century of scientific research, Irving Friedman presents data on monitoring changes in geothermal activity at Norris Geyser Basin using satellite telemetry. These papers summarize a near-decade-long effort by the USGS from the late 1990s to mid-2000s. In 2001, the USGS in cooperation with the National Park Service (Yellowstone National Park) and the University of Utah established the Yellowstone Volcano Observatory, the 5th volcano observatory in the United States.

Professional Paper↗

Mobile Bay

Mobile Bay is the largest bay found in Alabama’s coastal area (Handley et al., 2007). It was named an Estuary of National Significance in 1995 under the U.S. Environmental Protection Agency’s (EPA) National Estuary Program (NEP), and its Comprehensive Conservation Management Plan was completed in 2002. Mobile Bay is 1,070 km 2 (413 miles 2 ) in area and 51 km (32 miles) long, making it the sixth largest estuary in the continental United States (Mobile Bay NEP, 2008). Its ecosystem provides habitat for more than 300 species of birds, 310 species of fish, 68 species of reptiles, 57 species of mammals, 40 species of amphibians, and 15 species of shrimp (Mobile Bay NEP, 1997). Mobile Bay lies between the Mississippi and Atlantic Flyways (Mobile Bay NEP, 2003). Commercial and residential development and industrial use is heavy in the Mobile Bay area. Although local growth and industrial markets support the Mobile Bay area economy, the resulting environmental damage to the very ecosystem upon which they depend remains a threat to the environment, economy, and population. The Mobile Bay ecosystem boasts high biological diversity and productivity and supports many freshwater and saltwater species of recreational and commercial importance. The great diversity of Mobile Bay reflects the diversity of Alabama, which is home to the largest number of different plant and animal species of all states east of the Mississippi River (Stein, 2002), and is bolstered by the unique climate and geographic conditions surrounding the bay. Freshwater inflow from the Mobile-Tensaw River Delta, ranging from 60,000 to 3,700,000 gallons per second (Wallace, 1996), mixes with saltwater from the Gulf of Mexico, which enters Mobile Bay via wind and tides (Burgan and Engle, 2006). Because of the unique conditions surrounding Mobile Bay, including shallow waters, a dynamic climate, and artificial hydrologic modifications—such as the construction of the Mobile Bay Causeway in the 1920s, which serves as an unintentional barrier between Delta waters north of the Causeway and saline waters south of the Causeway, the salinity of Mobile Bay is highly variable. Mobile Bay receives an average of 165 cm (65 inches) of rain per year from tropical storms, summer thunderstorms, and winter cold fronts (Stout et al., 1998). The climate and geography that have made Mobile Bay so rich in resources have also contributed to the threats surrounding its ecosystem. The extensive amount of rain in Mobile Bay creates large amounts of runoff, polluting the waters with fertilizers, chemicals, sediment, oil, trash, and sewage (Mobile Bay NEP, 1997). Tourism, ecotourism, recreational and commercial fishing, recreational boating, shipping, and chemical, pulp, and paper production are significant industries in Mobile Bay and the surrounding areas. Despite the approximate \$3 billion and 55,000 jobs these industries bring into the community (Alabama Tourism Department, 2010), the growth, development, and environmental stress they create are major threats to the Mobile Bay ecosystem. Among the nation’s states, Alabama ranks fifth in number of different species (144 endemic species), second in number of extinctions that have already occurred (90 extinct species) and fourth in number of species at risk for extinction (14.8% at risk out of 4,533 total species; Stein, 2002). Twenty-one of these threatened and endangered species are found in Mobile Bay, whose brackish waters provide a nursery area for many species of vertebrates and invertebrates. Some of these species include the Alabama sturgeon, Gulf sturgeon, heavy pigtoe mussel, inflated heel-splitter mussel, West Indian manatee, Alabama beach mouse, Perdido beach mouse, Alabama red-bellied turtle, gopher tortoise, Kemp’s ridley sea turtle, green sea turtle, loggerhead sea turtle, eastern indigo snake, flatwoods salamander, piping plover, red-cockaded woodpecker, and wood stork. Habitat loss underlies the decline of some bird species in Mobile Bay, and large mammals such as the red wolf, Florida panther, and Florida black bear are no longer found in the area. However, some rare species, such as the swallow-tailed kite, sandhill crane, and gopher tortoise can still be found (Duke and Kruczynski, 1992). The value of wetlands in Mobile Bay and the rest of the Gulf of Mexico is still being investigated. Although various monetary valuations of wetlands exist, critics remark that undervaluation of wetlands is inevitable (Mobile Bay NEP, 2008) and that estimates often do not place appropriate value on ecological services (Mitsch and Gosselink, 2000). Additionally, many estimates account only for anthropogenic values. One estimate concludes that one acre of wetlands performs \$3,000 worth of water purification each year (Mobile Bay NEP, 1997). With more than 76,890 hectares (190,000 acres) of wetlands in the Mobile Bay area, that equates to a value exceeding one-half billion dollars every year. Tourism, fishing, boating, production, and shipping are significant industries in the Mobile Bay area. More than 90% of fish landed in recreational and commercial fishing in the bay depend on bay habitat, including wetlands, for life requirements (Mobile Bay NEP, 1997). The Port of Mobile is Alabama’s only ocean-ship port (Mobile Bay NEP, 2008). Baldwin County, on the eastern side of the bay, experienced a population increase of 75% from 1990 to 2007, with an 89% increase in housing units (Mobile Bay NEP, 2008). Development and industry support the Mobile Bay economy, but they depend on the continued health, sustainability, and production of the water and living resources of the Mobile Bay ecosystem. Wetland loss, along with other forms of environmental degradation, remains a threat to the Mobile Bay ecosystem and Mobile Bay’s socioeconomic foundation.

Alabama↗

Central Alaska Network vital signs monitoring plan

Denali National Park and Preserve, Wrangell-St. Elias National Park and Preserve, and Yukon-Charley Rivers National Preserve have been organized into the Central Alaska Network (CAKN) for the purposes of carrying out ecological monitoring activities under the National Park Services’ Vital Signs Monitoring program. The Phase III Report is the initial draft of the Vital Signs Monitoring Plan for the Central Alaska Network. It includes updated material from the Phase I and II documents. This report, and draft protocols for 11 of the network’s Vital Signs, were peer reviewed early in 2005. Review comments were incorporated into the document bringing the network to the final stage of having a Vital Signs Monitoring Plan. Implementation of the program will formally begin in FY 2006. The broad goals of the CAKN monitoring program are to: (1) better understand the dynamic nature and condition of park ecosystems; and (2) provide reference points for comparisons with other, altered environments. The focus of the CAKN program will be to monitor ecosystems in order to detect change in ecological components and in the relationships among the components. Water quality monitoring is fully integrated within the CAKN monitoring program. A monitoring program for lentic (non-moving water) has been determined, and the program for lotic systems (moving water) is under development.

Alaska↗

Toward conservation of midcontinental shorebird migrations

Shorebirds represent a highly diverse group of species, many of which experience tremendous energy demands associated with long-distance migratory flights. Transcontinental migrants are dependent upon dynamic freshwater wetlands for stopover resources essential for replenishment of lipid reserves and completion of migration. Patterns of shorebird migration across midcontinental wetlands were detected from migration reports to American Birds and information provided by U.S. Fish and Wildlife Service national wildlife refuges. Patterns in species composition and abundance varied geographically, emphasizing the uniqueness of different regions to migrating shorebirds. Smaller species and neotropical migrants moved primarily across the Great Plains, whereas larger species and North American migrants predominated in assemblages in the intermountain west Shorebirds were broadly dispersed in wetland habitats with dynamic water regimes. Whereas populations of shorebirds in coastal systems appear to concentrate at sites of seasonally predictable and abundant food resources, we propose that transcontinental shorebirds disperse and use wetlands opportunistically. This migration system exemplifies the need for large-scale, coordinated regional management efforts that recognize the dynamic nature of ecosystem processes.

Conservation Biology↗

Hawaii's endemic birds

The endemic landbirds of Hawaii, particularly the Hawaiian honeycreepers, an endemic subfamily of the cardueline finches, are one of the world's most dramatic examples of adaptive radiation and speciation (see glossary) in island ecosystems (Freed et al. 1987; Scott et al. 1988). From what is believed to have been a single successful colonization of the Hawaiian Archipelago by an ancestral species from North America, the honeycreepers evolved into a diverse array of species and subspecies of birds with bills ranging from thick, seed-eating beaks of the palila ( Loxioides bailleui ), to small insectivorous bills as seen on the `amakihi ( Hemignathus virens ), woodpecker-like adaptations of the `akiapola`au ( H. munroi ), and large, decurved nectar-feeding bills of the `i`iwi ( Vestiaria coccinea ). In addition to the honeycreepers, the historically documented endemic Hawaiian avifauna included three seabirds, several waterfowl, two raptors, and perching birds that include a species of crow, and representatives of Old World flycatchers, honeyeaters, and thrushes. In all, at least 71 endemic species and subspecies of Hawaiian birds existed at the time of Captain Cook's arrival in the Hawaiian Islands in 1778. Now, however, 76% of the Hawaiian birds are either extinct or endangered, and several of the remaining unlisted species are showing significant population declines. The arrival of humans to the Hawaiian Islands--starting with the Polynesians more than 1,500 years ago and continuing following European contact--drastically changed many natural ecosystems, leading not only to the extinction of many plant and animal species, but also to a significant reduction in both range and abundance for many other taxa. Originally, the Hawaiian birds were found in all habitat zones on each island, but today few native forest birds are found below 610-m (2,000-ft) elevation, and many of the wetland areas that once provided abundant habitat for waterbirds have been destroyed. Of the historically documented 71 taxa of endemic Hawaiian birds, 23 are now extinct, and 30 of the remaining 48 species and subspecies are listed as endangered or threatened by the U.S. Fish and Wildlife Service (USFWS 1992), many with few or only single populations remaining (Fig. 1; Table 1; Table 2). Studies of recently discovered fossil bird bones have further identified nearly 40 additional species of Hawaiian birds never seen alive by the post-Cook naturalists; many of these became extinct after the Polynesians arrived (Olson and James 1982; H. James, Smithsonian Institution, personal communication).

Hawai'i↗

Interdisciplinary science in support of environmental health along the United States-Mexico border

The diverse, fragile ecosystems of the borderlands have been pushed beyond sustainable levels due to rapid population growth and land-use changes. Water shortages and pollution, poor air quality, increased soil salinities, residual pesticides and heavy metal contaminants are some of the many stressors that are degrading the quality of life in the borderlands. The relationship between human health and environmental quality challenges public officials, medical professionals, and resource managers on both sides of the border in their efforts to provide for and maintain healthy communities. To help understand the relationship between environmental and human health, the U.S. Geological Survey's (USGS) Border Environmental Health Initiative (BEHI) created an Internet Map Service (IMS) with binational georeferenced data. The goal is to have seamless integration of borderwide datasets at regional and local scales that can lend understanding of the linkages between the condition of the physical environment and public health issues.

Fact Sheet↗

Summary of preliminary step-trend analysis from the Interagency Whitebark Pine Long-termMonitoring Program—2004-2013

In mixed and dominant stands, whitebark pine ( Pinus albicaulis ) occurs in over two million acres within the six national forests and two national parks that comprise the Greater Yellowstone Ecosystem (GYE). Currently, whitebark pine, an ecologically important species, is impacted by multiple ecological disturbances; white pine blister rust ( Cronartium ribicola ), mountain pine beetle ( Dendroctonus ponderosae ), wildfire, and climate change all pose significant threats to the persistence of whitebark pine populations. Substantial declines in whitebark pine populations have been documented throughout its range. Under the auspices of the Greater Yellowstone Coordinating Committee (GYCC), several agencies began a collaborative, long-term monitoring program to track and document the status of whitebark pine across the GYE. This alliance resulted in the formation of the Greater Yellowstone Whitebark Pine Monitoring Working Group (GYWPMWG), which consists of representatives from the U.S. Forest Service (USFS), National Park Service (NPS), U.S. Geological Survey (USGS), and Montana State University (MSU). This groundbased monitoring program was initiated in 2004 and follows a peer-reviewed protocol (GYWPMWG 2011). The program is led by the Greater Yellowstone Inventory and Monitoring Network (GRYN) of the National Park Service in coordination with multiple agencies. More information about this monitoring effort is available at: http://science. nature.nps.gov/im/units/gryn/monitor/whitebark_pine.cfm. The purpose of this report is to provide a draft summary of the first step-trend analysis for the interagency, long-term monitoring of whitebark pine health to the Interagency Grizzly Bear Study Team (IGBST) as part of a synthesis of the state of whitebark pine in the GYE. Due to the various stages of the analyses and reporting, this is the most efficient way to provide these results to the IGBST.

Natural Resource Data Series↗

Final project memorandum: Identifying conservation objectives for the Gulf Coast habitats of the black skimmer and gull-billed tern

Many shorebirds and nearshore waterbirds are of conservation concern across the Gulf of Mexico due to stressors such as human disturbance, predation, and habitat loss and degradation. Conservation and protection of these birds is important for the functioning of healthy ecosystems and for maintaining biodiversity in North America. Consequently, resource managers along the Gulf need decision-aiding tools that can help to answer important conservation questions for different species (e.g., how much area should be targeted by management actions to meet a species’ needs). To address this need, project researchers developed statistical models that could help identify habitat conservation objectives and actions for bird species taking into account different Gulf coast conservation scenarios that might occur in response to sea-level rise. The project focused specifically on the Black Skimmer ( Rynchops niger ) and Gull-billed Tern ( Gelochelidon nilotica ), two species designated as U.S. Fish and Wildlife Service Species of Conservation Concern and Gulf Coast Joint Venture Priority Species. These two birds are also representative of a variety of other beach and barrier-island nesting birds whose nesting habitats are threatened by sea-level rise (e.g., Least Tern, Snowy and Wilson’s Plover). The statistical models linked each bird’s abundance to habitat characteristics that could be influenced by different management actions. This information could be used to identify conservation objectives under different conservation scenarios.

Gulf of Mexico↗

An introduction to the evaluation of restoration for avian species at Caminada Headland and Whiskey Island in Louisiana

Barrier islands are crucial for protecting Louisiana’s coastal communities and ecosystems as they reduce coastal erosion and help safeguard native flora and fauna. Along the Louisiana shoreline, these islands are mostly long and thin, running parallel to the shoreline. The islands typically consist of the following components: 1) a sandy beach facing the Gulf of Mexico; 2) vegetated and non-vegetated dunes; 3) overwash areas; 4) swales; 5) upland shrubs; 6) wetland shrubs, such as black mangrove (Avicennia germinans); 7) backbay marshes; and 8) tidal flats. Dune vegetation and vegetation along the back-barrier help bind and collect sediment, which create and maintain wetlands on the north side of the barrier islands. Barrier islands provide various ecological services including: 1) buffering waves to decrease storm impacts; 2) protecting wetlands that provide suitable reproductive habitat and nursery grounds for fish and shellfish; and 3) providing critical habitat for birds and sea turtles (Barbier 2013).

Louisiana↗

A characterization of deep-sea coral and sponge communities along the California and Oregon coast using a remotely operated vehicle on the EXPRESS 2018 expedition

Deep-sea coral and sponge (DSCS) communities serve as essential fish habitats (EFH) by providing shelter and nursery habitat, increasing diversity, and increasing prey availability (Freese and Wing, 2003; Bright, 2007; Baillon et al., 2012; Henderson et al., 2020). Threats to these long-lived, fragile organisms from bottom contact fishing gear, potential offshore renewable energy development, and ocean warming and acidification have increased the need for DSCS research along the U.S. West Coast (Gomez et al., 2018; Salgado et al., 2018; Yoklavich, et al., 2018; Gugliotti et al., 2019). The focus of these studies has varied from species distribution and abundance (Yoklavich and Love, 2005; Tissot et al., 2006) to developing and validating predictive distribution models (Huff et al., 2013; Rooper et al., 2017; Kreidler, 2020) to finding medicinal uses for corals and sponges (Essack et al., 2011; Shrestha et al., 2018). Due to the vast area of unexplored seafloor within the U.S. exclusive economic zone (EEZ; 200 nautical miles off the coast) and the technological requirements and expanse of deep-sea research, there is still much to learn about the distributions and biology of DSCS. This information is critical to resource managers for effective conservation and management of DSCS habitats. Protections are provided by the Pacific Fishery Management Council (PFMC) designation of groundfish EFH conservation areas (EFHCA) and the National Marine Sanctuaries Act (NMSA). Areas designated as EFHCA are closed to bottom trawl fishing to protect and preserve seafloor habitats. Recently the PFMC adopted Amendment 28 to the Groundfish Fishery Management Plan (GFMP; Pacific Fishery Management Council, 2019) which modified EFHCAs by closing new areas identified as vulnerable and reopening areas deemed not vulnerable. The NMSA prohibits bottom disturbance from certain activities within areas designated as national marine sanctuaries, such as oil and gas exploration or extraction, cable laying, and other forms of seabed alteration or construction that disturb benthic communities. NOAA’s Deep-Sea Coral and Research Technology Program (DSCRTP) began a 4-yr funding initiative for the U.S. West Coast in 2017. The goals of the West Coast Deep-Sea Coral Initiative (WCDSCI) were to: 1) gather baseline information on areas subject to fishing regulation changes prior to the implementation of Amendment 28; 2) improve our understanding of known DSCS bycatch “hot spots”; and 3) explore and assess DSCS resources within NOAA National Marine Sanctuaries with emphasis on areas of sanctuary resource protection and management concerns. During the first year of the program, a research cruise was developed to survey the West Coast from Oregon to California studying the DSCS ecosystems in priority areas. The 31-day expedition (9 Oct – 8 Nov, 2018) was launched from the NOAA Ship Bell M. Shimada, beginning in Newport, OR and ending in San Diego, CA. The science team assembled for this cruise were members of the EXpanding Pacific Research and Exploration of Submerged Systems (EXPRESS) campaign, which brings together researchers from federal and nonfederal institutions to collaborate on scientific expeditions targeting the deepwater areas off California, Oregon, and Washington. EXPRESS supports researchers leveraging funding, resources, personnel, and expertise to accomplish more science than would have been possible by a single entity alone. The 2018 coastwide expedition included research partners from National Marine Fisheries Service (NMFS) Southwest Fisheries Science Center (SWFSC) and Northwest Fisheries Science Center (NWFSC), National Ocean Service (Channel Islands, Cordell Bank, Greater Farallones, and Monterey Bay National Marine Sanctuaries), Bureau of Ocean Energy Management (BOEM), U.S. Geological Survey (USGS), and Monterey Bay Aquarium Research Institute (MBARI). Research objectives for the cruise were to: 1) Collect DSCS baseline information at 10 of the EFHCA sites undergoing protection modifications by the Pacific Fishery Management Council. 2) Collect DSCS and fish data at previously unexplored sites within West Coast National Marine Sanctuaries. 3) Revisit a subset of previously surveyed sites to document if changes in DCSC have occurred over time. 4) Collect information to validate BOEM supported cross-shelf habitat suitability models for DSCS. 5) Collect samples to help in identifying (and understanding) West Coast DSCS and expand use of new technologies (ROV, AUV, and environmental DNA [eDNA]). 6) Collect water samples for coastwide eDNA, nutrient, and carbon chemistry studies.

California, Oregon↗

Chaparral

One of the most dynamic California ecosystems is chaparral. Dominated by evergreen, sclerophyllous shrubs and small trees, chaparral is the most extensive vegetation type in the state (Figure 1). The nearly impenetrable tangle of stiff branches of this unusual vegetation inhibits exploration, and as a consequence the public know little about its natural history and unique characteristics. This under-valued ecosystem is recognized instead by the threat of its extensive, high-intensity canopy-burning wildfires that characterize the dry summer and fall seasons of the state. Because urban areas frequently share borders or intermix with chaparral, societal interests often conflict with conservation of this ecosystem, and understanding its history and dynamics are a key to appreciating its importance. In this chapter we emphasize the principal structure and dynamics of this important ecosystem. The long summer rainless period has strong impacts on all organisms and, importantly, the droughts influence the fire regime that characterizes chaparral. An ecosystem currently characterized by a specific drought and wildfire regime can expect significant impacts from climate change. Because of its dominance at lower elevations, chaparral also is frequently found at or near the boundaries of urban developments and metropolitan centers. Attempts to suppress fire also affect chaparral dynamics in the long absence of fire. The conflicts between the impacts of chaparral wildfire and human life and structures has been an aspect of California’s history since the beginning, but as development encroaches ever more into chaparral regions, the conflicts have increased. Consequently, understanding this vegetation is important not only because of its significance in understanding ecological evolution and the ecological services provided by chaparral, but also because of its direct impacts on human settlements.

Book chapter↗

Mapping climate change vulnerability of aquatic-riparian ecosystems using decision-relevant indicators

Climate change has and is projected to continue to alter historical regimes of temperature, precipitation, and hydrology. To assess the vulnerability of climate change from a land management perspective and spatially identify where the most extreme changes are anticipated to occur, we worked in collaboration with land managers to develop a climate change vulnerability map for the midwestern United States with a focus on riparian systems. The map is intended for use by regional administrators to help them work across various program areas (e.g. fisheries, endangered species) to prioritize locations needing support for adaptation planning. The tool can also be utilized locally by managers to better understand the effects that projected climate scenarios have on the hydrology of management units as they develop adaptation strategies. The vulnerability map is watershed-based (360 watershed units within the region) and combines 15 climate change indicators that were selected by U.S. Fish and Wildlife Service natural resource managers based upon known and anticipated effects to species and habitats. The projected change in each of these indicators from the historical period (1986–2005) to the future period (2040–2059) was aggregated into a composite score for each watershed. Landscape-scale metrics reflective of a watershed’s adaptive capacity were combined with the climate change indicators to produce a vulnerability score. We found sub-regional variation in vulnerability to climate change with the greatest vulnerability in Iowa, central Illinois, and northwest Ohio. Greater vulnerability was seen in the higher greenhouse gas concentration scenario, Representative Concentration Pathway (RCP) 8.5 compared to the lower greenhouse gas concentration scenario RCP 4.5, when looking at the mean of the five downscaled climate models used in this study. By quantifying and mapping climate change vulnerability, natural resource managers can better understand the degree of vulnerability for individual watersheds and identify areas of prioritization in regional and local planning efforts.

Iowa, Illinois, Indiana, Michigan, Minnesota, Miss↗

Establishing quantitative benchmarks for soil erosion and ecological monitoring, assessment, and management

Soil erosion can have a multitude of negative impacts on agroecosystems and society and there remains an urgent need for tools to support its management. Quantitative benchmarks based on holistic understanding of erosion processes, ecosystem function, and land use objectives can be used with monitoring data and models to inform assessments and make objective and actionable decisions about erosion management. However, managers currently lack a framework for establishing benchmarks. Here, we present a framework and evaluation of different approaches to establishing quantitative benchmarks for soil erosion and ecological monitoring and assessment that can inform land management decisions. We use monitoring data collected across Chihuahuan Desert ecosystems in the United States and an aeolian sediment transport model to illustrate how benchmarks can be established. Approaches include establishing benchmarks from relationships between soil erosion indicators, reference states and land potential, including state-and-transition models, and desired conditions from existing monitoring data. We discuss the benefits and caveats of the different approaches and show how combining different benchmarking approaches can help users ensure that benchmarks appropriately reflect thresholds for soil erosion and achievable management outcomes. We finish by identifying future research needs to support establishment and application of erosion benchmarks across agroecosystems and recognize the opportunity to extend the benchmarking approaches to management of other agroecosystem processes and services.

Ecological Indicators↗

Field manual for the investigation of fish kills

Preface Fish kills are graphic evidence of serious problems in a lake or stream. If the kill is related to the presence of toxic chemicals, there may be human health concerns, in addition to the obvious damage to the ecosystem and the fisheries resources. Depending on the cause of a fish kill, legal and economic ramifications may be involved. If the kill is cause by human or corporate actions, litigation is likely to follow, with possible court-awarded damages and assessed costs for cleanup and restoration. Federal and State agencies have expressed the need for a compendium of known and accepted methods and techniques that should be followed by anyone investigation a fish kill. This manual is an attempt to fill that need. It addresses the many facets involved in a fish kill investigation and provides instruction, guidance, examples, and sample forms that can be used. The U.S. Fish and Wildlife Service is pleased to provide this manual to help fisheries biologists and others prepare for a fish kill investigation. Research and Development (Region 8) has cooperated with the Division of Environmental Contaminants in Fish and Wildlife Enhancement to provide expertise and funds. We hope that the manual proves to be useful for interpreting evidence at the site of a fish kill, and corrective actions, and preparing for appearance as a court witness.

Resource Publication↗

Two-dimensional hydrodynamic simulation of surface-water flow and transport to Florida Bay through the Southern Inland and Coastal Systems (SICS)

Successful restoration of the southern Florida ecosystem requires extensive knowledge of the physical characteristics and hydrologic processes controlling water flow and transport of constituents through extremely low-gradient freshwater marshes, shallow mangrove-fringed coastal creeks and tidal embayments, and near-shore marine waters. A sound, physically based numerical model can provide simulations of the differing hydrologic conditions that might result from various ecosystem restoration scenarios. Because hydrology and ecology are closely linked in southern Florida, hydrologic model results also can be used by ecologists to evaluate the degree of ecosystem restoration that could be achieved for various hydrologic conditions. A robust proven model, SWIFT2D, (Surface-Water Integrated Flow and Transport in Two Dimensions), was modified to simulate Southern Inland and Coastal Systems (SICS) hydrodynamics and transport conditions. Modifications include improvements to evapotranspiration and rainfall calculation and to the algorithms that describe flow through coastal creeks. Techniques used in this model should be applicable to other similar low-gradient marsh settings in southern Florida and elsewhere. Numerous investigations were conducted within the SICS area of southeastern Everglades National Park and northeastern Florida Bay to provide data and parameter values for model development and testing. The U.S. Geological Survey and the National Park Service supported investigations for quantification of evapotranspiration, vegetative resistance to flow, wind-induced flow, land elevations, vegetation classifications, salinity conditions, exchange of ground and surface waters, and flow and transport in coastal creeks and embayments. The good agreement that was achieved between measured and simulated water levels, flows, and salinities through minimal adjustment of empirical coefficients indicates that hydrologic processes within the SICS area are represented properly in the SWIFT2D model, and that the spatial and temporal resolution of these processes in the model is adequate. Sensitivity analyses were conducted to determine the effect of changes in boundary conditions and parameter values on simulation results, which aided in identifying areas of greatest uncertainty in the model. The parameter having the most uncertainty (most in need of further field study) was the flow coefficient for coastal creeks. Smaller uncertainties existed for wetlands frictional resistance and wind. Evapotranspiration and boundary inflows indicated the least uncertainty as determined by varying parameters used in their formulation and definition. Model results indicated that wind was important in reversing coastal creek flows. At Trout Creek (the major tributary connecting Taylor Slough wetlands with Florida Bay), flow in the landward direction was not simulated properly unless wind forcing was included in the simulation. Simulations also provided insight into the major influence that wind has on salinity mixing along the coast, the varying distribution of wetland flows at differing water levels, and the importance of topography in controlling flows to the coast. Slight topographic variations were shown to highly influence the routing of water. A multiple regression analysis was performed to relate inflows at the northern boundary of Taylor Slough bridge to a major pump station (S-332) north of the SICS model area. This analysis allows Taylor Slough bridge boundary conditions to be defined for the model from operating scenarios at S-332, which should facilitate use of the SICS model as an operational tool.

Florida↗

Management and monitoring of the endangered Shenandoah salamander under climate change: Workshop report 10-12 April 2012

Here we report on a structured decision making (SDM) process to identify management strategies to ensure persistence of the federally endangered Shenandoah salamander (Plethodon shenandoah), given that it may be at increased extinction risk under projected climate change. The focus of this report is the second of two SDM workshops; in the first workshop, participants developed a prototype of the decision, including problem frame, management objectives and a suite of potential management strategies, predictive models to inform the decision and link alternatives with the objectives to identify potential solutions, and identified data needs to reduce key uncertainties in the decision. Participants in this second workshop included experts in National Park Service policy at multiple administrative levels, who refined objectives, further evaluated the initial management alternatives, and discussed policy constraints on implementing active management for the species and its high-elevation habitat. The conclusion of the second workshop was similar to that of the first: the current state of information and objectives suggest that there is some value in considering active management to reduce the long-term extinction risk for the species, though there are institutional conservative policies to implementing active management at range-wide scales. The workshop participants also emphasized a conservative NPS management philosophy, including caution in implementing management actions that may ultimately harm the system, a stated assumption that ecosystem changes were “natural” unless demonstrated otherwise (therefore not warranting active management to mitigate), and a need to demonstrate that extinction risk is tied to anthropogenic influence prior to taking active management to mitigate specific anthropogenic influences. Even within a protected area having minimal human disturbance, intertwined environmental variables and interspecific relationships that drive population trends challenge our ability to demonstrate direct links with (anthropogenically influenced) climate change and the decline of a species. Thus while this policy may reduce the potential for injurious management, it may also necessitate extraordinary resources to reduce uncertainty regarding fundamental drivers of species decline prior to taking action.

Natural Resource Report↗

Organic matters: Investigating the sources, transport, and fate of organic matter in Fanno Creek, Oregon

The term organic matter refers to the remnants of all living material. This can include fallen leaves, yard waste, animal waste, downed timber, or the remains of any other plant and animal life. Organic matter is abundant both on land and in water. Investigating organic matter is necessary for understanding the fate and transport of carbon (a major constituent of organic matter). Organic matter is necessary for maintaining a healthy ecosystem. It participates in a wide range of ecological functions, such as supplying food to the microbes that are part of the foundation of the food chain. Organic matter also plays a role in many other natural functions, including the binding and transport of some trace metals and controlling how light is absorbed in the water column. Organic matter in a stream can be found in many places, such as in the leaves that have fallen from a tree (termed "leaf litter"), in algae floating in the stream or attached to rocks, as part of the soil, or even suspended or dissolved in the water. The U.S. Geological Survey (USGS), in cooperation with Clean Water Services, recently completed an investigation into the sources, transport, and fate of organic matter in the Fanno Creek watershed. The information provided by this investigation will help resource managers to implement strategies aimed at decreasing the excess supply of organic matter that contributes to low dissolved-oxygen levels in Fanno Creek and downstream in the Tualatin River during summer. This fact sheet summarizes the findings of the investigation.

Oregon↗

Range-wide assessment of livestock grazing across the sagebrush biome

Domestic livestock grazing occurs in virtually all sagebrush habitats and is a prominent disturbance factor. By affecting habitat condition and trend, grazing influences the resources required by, and thus, the distribution and abundance of sagebrush-obligate wildlife species (for example, sage-grouse Centrocercus spp.). Yet, the risks that livestock grazing may pose to these species and their habitats are not always clear. Although livestock grazing intensity and associated habitat condition may be known in many places at the local level, we have not yet been able to answer questions about use, condition, and trend at the landscape scale or at the range-wide scale for wildlife species. A great deal of information about grazing use, management regimes, and ecological condition exists at the local level (for individual livestock management units) under the oversight of organizations such as the Bureau of Land Management (BLM). However, the extent, quality, and types of existing data are unknown, which hinders the compilation, mapping, or analysis of these data. Once compiled, these data may be helpful for drawing conclusions about rangeland status, and we may be able to identify relationships between those data and wildlife habitat at the landscape scale. The overall objective of our study was to perform a range-wide assessment of livestock grazing effects (and the relevant supporting data) in sagebrush ecosystems managed by the BLM. Our assessments and analyses focused primarily on local-level management and data collected at the scale of BLM grazing allotments (that is, individual livestock management units). Specific objectives included the following: 1. Identify and refine existing range-wide datasets to be used for analyses of livestock grazing effects on sagebrush ecosystems. 2. Assess the extent, quality, and types of livestock grazing-related natural resource data collected by BLM range-wide (i.e., across allotments, districts and regions). 3. Compile and synthesize recommendations from federal and university rangeland science experts about how BLM might prioritize collection of different types of livestock grazing-related natural resource data. 4. Investigate whether range-wide datasets (Objective 1) could be used in conjunction with remotely sensed imagery to identify across broad scales (a) allotments potentially not meeting BLM Land Health Standards (LHS) and (b) allotments in which unmet standards might be attributable to livestock grazing. Objective 1: We identified four datasets that potentially could be used for analyses of livestock grazing effects on sagebrush ecosystems. First, we obtained the most current spatial data (typically up to 2007, 2008, or 2009) for all BLM allotments and compiled data into a coarse, topologically enforced dataset that delineated grazing allotment boundaries. Second, we obtained LHS evaluation data (as of 2007) for all allotments across all districts and regions; these data included date of most recent evaluation, BLM determinations of whether region-specific standards were met, and whether BLM deemed livestock to have contributed to any unmet standards. Third, we examined grazing records of three types: Actual Use (permittee-reported), Billed Use (BLM-reported), and Permitted Use (legally authorized). Finally, we explored the possibility of using existing Natural Resources Conservation Service (NRCS) Ecological Site Description (ESD) data to make up-to-date estimates of production and forage availability on BLM allotments. Objective 2: We investigated the availability of BLM livestock grazing-related monitoring data and the status of LHS across 310 randomly selected allotments in 13 BLM field offices. We found that, relative to other data types, the most commonly available monitoring data were Actual Use numbers (permittee-reported livestock numbers and season-of-use), followed by Photo Point, forage Utilization, and finally, Vegetation Trend measurement data. Data availability and frequency of data collection varied across allotments and field offices. Analysis of the BLM's LHS data indicated 67 percent of allotments analyzed were meeting standards. For those not meeting standards, livestock were considered the causal factor in 45 percent of cases (about 15 percent of all allotments). Objective 3: We sought input from 42 university and federal rangeland science experts about how best to prioritize rangeland monitoring activities associated with ascertaining livestock impacts on vegetation resources. When we presented a hypothetical scenario to these scientists and asked them to prioritize monitoring activities, the most common response was to measure ground and vegetation cover, a variable that in many cases (10 of 13 field offices sampled) BLM had already identified as a monitoring priority. Experts identified several other traditional (for example, photo points) and emerging approaches (for example, high-resolution aerial photography) to monitoring. Objective 4: We used spatial allotment data (described in Objective 1) and remotely sensed vegetation data (sagebrush cover, herbaceous vegetation cover, litter and bare soil) to assess differences in allotment LHS status ("Not met" vs. "Met"; if "Not met" - livestock-caused vs. not). We then developed logistic regression models, using vegetation variables to predict LHS status of BLM allotments in sagebrush steppe habitats in Wyoming and portions of Montana and Colorado. In general, we found that more consistent data collection at the local level might improve suitability of data for broad-scale analyses of livestock impacts. As is, data collection methodologies varied across field offices and States, and we did not find any local-level monitoring data (Actual Use, Utilization, Vegetation Trend) that had been collected consistently enough over time or space for range-wide analyses. Moreover, continued and improved emphasis on monitoring also may aid local management decisions, particularly with respect to effects of livestock grazing. Rangeland science experts identified ground cover as a high monitoring priority for assessing range condition and emphasized the importance of tracking livestock numbers and grazing dates. Ultimately, the most effective monitoring program may entail both increased data collection effort and the integration of alternative monitoring approaches (for example, remote sensing or monitoring teams). In the course of our study, we identified three additional datasets that could potentially be used for range-wide analyses: spatial allotment boundary data for all BLM allotments range-wide, LHS evaluations of BLM allotments, and livestock use data (livestock numbers and grazing dates). It may be possible to use these spatial datasets to help prioritize monitoring activities over the extensive land areas managed by BLM. We present an example of how we used spatial allotment boundary data and LHS data to test whether remotely sensed vegetation characteristics could be used to predict which allotments met or did not meet LHS. This approach may be further improved by the results of current efforts by BLM to test whether more intensive (higher resolution) LHS assessments more accurately describe land health status. Standardized data collection in more ecologically meaningful land units may improve our ability to use local-level data for broad-scale analyses.

Open-File Report↗